Citrus Sinensis ID: 027562

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY
Secondary Structure (PSIPRED)
ccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHcccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccEEEEcc
Coil and Loop (DISEMBL)
MDPNLFKaaaagnlepfKDIAREVIKRLLTAKTKNTILHVNirskesenaSTKFVEEILEKCPLLLLqvnakgetplhvaakfghSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILtkedpdypysanndgktplymaadyrSSDMVLALLEnstsashegpngkTALHAAAMKSYFGKFSYTLSVGISILISFY
Flexible Loop (DISEMBL)
MDPNLFKAaaagnlepfkdIAREVIKRLltaktkntilhvnirskesenaSTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLqheneelesgirtaRHMIRMTNKEKNTALHEAVCHQNVDVVEILTkedpdypysanndgktPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY
Low Complexity Region (SEG)
MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY
Disordered region (IsUnstruct)
**********AGNLEPFKDIAREVIKRLLTAKTKNTILHVNIR*******STKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQH**********TARHMIRMT***KNTALHEAVCHQNVDVVEILTKEDPDYPY********PLYMAADYRSSDMVLAL*****************LHAAAMKSYFGKFSYTLSVGISILISF*
Disordered Region (DISOPRED)
MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL****
Disordered Region (DISEMBL)
MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN**********GKTALHAAAMKSYFGKFSYTLSVGISILISFY
Disordered Region (DISPRO)
*DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
P16157	1881	Ankyrin-1 OS=Homo sapiens	no	no	0.716	0.084	0.304	2e-11
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.720	0.305	0.294	3e-10
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.716	0.085	0.298	4e-10
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.743	0.139	0.31	4e-10
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.819	0.092	0.272	3e-09
Q804S5	1030	E3 ubiquitin-protein liga	no	no	0.684	0.147	0.268	1e-08
Q80YE7	1442	Death-associated protein	no	no	0.846	0.130	0.257	1e-08
Q01484	3957	Ankyrin-2 OS=Homo sapiens	no	no	0.608	0.034	0.322	2e-08
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.761	0.038	0.275	2e-08
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	no	0.608	0.034	0.322	2e-08

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 68.9 bits (167), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 25/184 (13%)

Query: 29  LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDI 88
           L     +T LH+  R    E       +E  + C      +  KG TPLHVAAK+G   +
Sbjct: 498 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 551

Query: 89  VRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 148
             +L+ER     H N   ++G+               T LH AV H N+D+V++L     
Sbjct: 552 AELLLERDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRG- 592

Query: 149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS 208
             P+S   +G TPL++AA     ++  +LL+   SA+ E   G T LH AA + +    +
Sbjct: 593 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 652

Query: 209 YTLS 212
             LS
Sbjct: 653 LLLS 656

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Homo sapiens (taxid: 9606)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 30/190 (15%)

Query: 17  FKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE----KCPLLLLQVNAK 72
            K+I + + K++ TA+  +T LH  +R    E  +   +E I E    +   LL + N  
Sbjct: 1   MKEIKKTMTKQM-TARRDDTPLHTAVR----EGKTDLLLEMIGEHDGVELKELLAEQNQS 55

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNT--ALHE 130
           GET L+VAA++G++D+V++      L++H +  L               K KN   A H 
Sbjct: 56  GETALYVAAEYGYTDMVKI------LMKHSDSVLAG------------TKAKNGFDAFHI 97

Query: 131 AVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS-ASHEGP 189
           A  + N+ V+++L + +P+  ++ ++   T L+ AA     ++V  LL+     A+    
Sbjct: 98  AAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARS 157

Query: 190 NGKTALHAAA 199
           NGKTALH+AA
Sbjct: 158 NGKTALHSAA 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 83/184 (45%), Gaps = 25/184 (13%)

Query: 29  LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDI 88
           L     +T LH   R    + A     +E  + C      +  KG TPLHVAAK+G   +
Sbjct: 494 LATTAGHTPLHTAAREGHVDTALALLEKEASQAC------MTKKGFTPLHVAAKYGKVRL 547

Query: 89  VRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 148
             +L+E      H N   ++G+               T LH AV H N+D+V++L     
Sbjct: 548 AELLLEHDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRG- 588

Query: 149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS 208
             P+S   +G TPL++AA     ++  +LL+   SA+ E   G T LH AA + +    +
Sbjct: 589 GSPHSPAWNGYTPLHIAAKQNQIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVA 648

Query: 209 YTLS 212
             LS
Sbjct: 649 LLLS 652

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Mus musculus (taxid: 10090)

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 94/200 (47%), Gaps = 35/200 (17%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKN--TILHVNIRSKESENASTKFVEEILEKC 62
           L  AA  GNL+  K +A+      + AKT N  T+LH  ++S      +   V+ ++E  
Sbjct: 642 LHCAAKNGNLDLAKLLAKNGAD--VNAKTDNGETVLHYAVKS-----GNLHLVKWLIENQ 694

Query: 63  PLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRM 119
                 ++AK   GET LH A  F +SD+V +L+     +   N + ++G+         
Sbjct: 695 A----NIHAKTDNGETVLHYAVSFNNSDLVYLLIAYGADV---NAKTDNGL--------- 738

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
                 TALH AV   N+D+V +L     D   +  N G+T LY A DY S D+V  L+ 
Sbjct: 739 ------TALHYAVYDGNLDLVSLLISHGADVN-AKTNSGETILYSAVDYGSPDLVYLLIA 791

Query: 180 NSTSASHEGPNGKTALHAAA 199
                + +  NG+T LH A 
Sbjct: 792 YGADVNAKTDNGETVLHYAV 811

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 31/213 (14%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA +G  E  + + ++  +    AK   T LH++ R  +++      V+++L++   
Sbjct: 453 LHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKAD-----IVQQLLQQG-- 505

Query: 65  LLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
                NA    G TPLH+AA+ GH D+   L++    L                   +T 
Sbjct: 506 --ASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGASLS------------------ITT 545

Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
           K+  T LH A  +  ++V  +L ++    P +A   G TPL++AA Y +  + L LL+  
Sbjct: 546 KKGFTPLHVAAKYGKLEVASLLLQKSAS-PDAAGKSGLTPLHVAAHYDNQKVALLLLDQG 604

Query: 182 TSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
            S      NG T LH AA K+     +  L  G
Sbjct: 605 ASPHAAAKNGYTPLHIAAKKNQMDIATSLLEYG 637

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/175 (26%), Positives = 83/175 (47%), Gaps = 23/175 (13%)

Query: 45  KESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENE 104
           K + N     VE+IL++ P + +     G T +  A++ GH D++++L++ +  L+ E++
Sbjct: 437 KAAANGDLAKVEDILKR-PDVDVNGQCAGHTAMQAASQNGHVDVLKLLLKHSVDLEAEDK 495

Query: 105 ELESGIRTARHM------------------IRMTNKEKNTALHEAVCHQNVDVVEILTKE 146
           +   G R   H                   +   NK + T LH AV   ++ VV+ L  +
Sbjct: 496 D---GDRAVHHASFGDEGSVIEVLHRGGADLNARNKRRQTPLHIAVNKGHLQVVKTLL-D 551

Query: 147 DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
              +P   +++G TPL+ A   +  DM+  LLE     +    NG  ALH AA++
Sbjct: 552 FGCHPSLQDSEGDTPLHDAISKKRDDMLSVLLEAGADVTITNNNGFNALHHAALR 606

E3 ubiquitin-protein ligase that mediates ubiquitination of Delta receptors, which act as ligands of Notch proteins. Positively regulates the Delta-mediated Notch signaling by ubiquitinating the intracellular domain of Delta, leading to endocytosis of Delta receptors. It thereby participates in many processes regulated by the Notch signaling pathway, such as midline cell fate specification prior to germ layer formation, patterning of sensory cell differentiation in the ear, neurogenesis of the hindbrain and commitment to a secretory fate in the intestine. Essential for early embryonic development.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q80YE7|DAPK1_MOUSE Death-associated protein kinase 1 OS=Mus musculus GN=Dapk1 PE=1 SV=3

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 96/214 (44%), Gaps = 26/214 (12%)

Query: 3   PNLFKAAAAGNLEPFKDIAREVIKR--LLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           P L  AA  GN++    + + +IKR   +  + K     +   S+     + KF+ E   
Sbjct: 381 PPLLIAAGCGNIQ----MLQLLIKRGSRIDVQDKGGSNAIYWASRHGHVDTLKFLNE--N 434

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM---- 116
           KCPL +   +  GET LHVAA++GH+D+V++L         +++E E+ +  A       
Sbjct: 435 KCPLDV--KDKSGETALHVAARYGHADVVQLLCSFGSNPDFQDKEEETPLHCAAWHGYYS 492

Query: 117 -----------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA 165
                      + + N+E  T L  A      D+VE L +   D   +++ DG   L++A
Sbjct: 493 VAKALCEVGCNVNIKNREGETPLLTASARGYHDIVECLAEHGADL-NASDKDGHIALHLA 551

Query: 166 ADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
                 +++  LL + +    +  +G T LH A 
Sbjct: 552 VRRCQMEVIKTLLGHGSFVDFQDRHGNTPLHVAC 585

Calcium/calmodulin-dependent serine/threonine kinase involved in multiple cellular signaling pathways that trigger cell survival, apoptosis, and autophagy. Regulates both type I apoptotic and type II autophagic cell deaths signal, depending on the cellular setting. The former is caspase-dependent, while the latter is caspase-independent and is characterized by the accumulation of autophagic vesicles. Phosphorylates PIN1 resulting in inhibition of its catalytic activity, nuclear localization, and cellular function. Phosphorylates TPM1, enhancing stress fiber formation in endothelial cells. Phosphorylates STX1A and significantly decreases its binding to STXBP1. Phosphorylates PRKD1 and regulates JNK signaling by binding and activating PRKD1 under oxidative stress. Phosphorylates BECN1, reducing its interaction with BCL2 and BCL2L1 and promoting the induction of autophagy. Phosphorylates TSC2, disrupting the TSC1-TSC2 complex and stimulating mTORC1 activity in a growth factor-dependent pathway. Phosphorylates RPS6, MYL9 and DAPK3 (By similarity). Acts as a signaling amplifier of NMDA receptors at extrasynaptic sites for mediating brain damage in stroke. Cerebral ischemia recruits DAPK1 into the NMDA receptor complex and it phosphorylates GRINB at Ser-1303 inducing injurious Ca(2+) influx through NMDA receptor channels, resulting in an irreversible neuronal death.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 64  LLLLQ-------VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA--- 113
           LLLLQ        N +GET LH+AA+ G  ++VR L+    L+     E ++ +  A   
Sbjct: 448 LLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRL 507

Query: 114 ----------RHMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
                     +HM        N  T LH +     VDV  +L +    +   A   G TP
Sbjct: 508 GKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSL-ATKKGFTP 566

Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
           L++AA Y S D+   LL+   +A   G NG T LH AA
Sbjct: 567 LHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAA 604

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Homo sapiens (taxid: 9606)

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 91/200 (45%), Gaps = 31/200 (15%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA +G  E  + + ++  +    AK   T LH++ R  +++      V+++L++   
Sbjct: 470 LHMAARSGQAEVVRYLVQDGAQVEAKAKDDQTPLHISARLGKAD-----IVQQLLQQG-- 522

Query: 65  LLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
                NA    G TPLH++A+ GH D+   L++    L                   +T 
Sbjct: 523 --ASPNAATTSGYTPLHLSAREGHEDVAAFLLDHGASLS------------------ITT 562

Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
           K+  T LH A  +  ++V  +L ++    P +A   G TPL++AA Y +  + L LL+  
Sbjct: 563 KKGFTPLHVAAKYGKLEVANLLLQKSAS-PDAAGKSGLTPLHVAAHYDNQKVALLLLDQG 621

Query: 182 TSASHEGPNGKTALHAAAMK 201
            S      NG T LH AA K
Sbjct: 622 ASPHAAAKNGYTPLHIAAKK 641

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 71/158 (44%), Gaps = 23/158 (14%)

Query: 64  LLLLQ-------VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA--- 113
           LLLLQ        N +GET LH+AA+ G  ++VR L+    L+     E ++ +  A   
Sbjct: 448 LLLLQNGASPDVTNIRGETALHMAARAGQVEVVRCLLRNGALVDARAREEQTPLHIASRL 507

Query: 114 ----------RHMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
                     +HM        N  T LH +     VDV  +L +    +   A   G TP
Sbjct: 508 GKTEIVQLLLQHMAHPDAATTNGYTPLHISAREGQVDVASVLLEAGAAHSL-ATKKGFTP 566

Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
           L++AA Y S D+   LL+   +A   G NG T LH AA
Sbjct: 567 LHVAAKYGSLDVAKLLLQRRAAADSAGKNGLTPLHVAA 604

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
224127106	575	predicted protein [Populus trichocarpa]	0.900	0.347	0.483	2e-48
224127079	394	predicted protein [Populus trichocarpa]	0.896	0.505	0.497	3e-48
224127098	399	predicted protein [Populus trichocarpa]	0.869	0.483	0.514	9e-47
224127104	405	predicted protein [Populus trichocarpa]	0.869	0.476	0.514	9e-47
224127081	227	predicted protein [Populus trichocarpa]	0.869	0.850	0.514	1e-46
224145572	395	predicted protein [Populus trichocarpa]	0.882	0.496	0.488	3e-46
224127093	281	predicted protein [Populus trichocarpa]	0.873	0.690	0.5	9e-46
224127089	217	predicted protein [Populus trichocarpa]	0.936	0.958	0.490	2e-45
224127096	219	predicted protein [Populus trichocarpa]	0.909	0.922	0.488	3e-45
224157601	254	predicted protein [Populus trichocarpa]	0.909	0.795	0.441	3e-45

>gi|224127106|ref|XP_002329398.1| predicted protein [Populus trichocarpa] gi|222870448|gb|EEF07579.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 102/211 (48%), Positives = 145/211 (68%), Gaps = 11/211 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAA AGN+ PF++     + +LLT   +NTILHV ++++ SE  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENYQTCSLNQLLTPD-ENTILHVYLKNQSSEPESTDFVDKFLE 59

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
           +CP LL Q N +GETPLH+ A++GHS++V+VL++RAK L  +    ESG+  A+ M+RMT
Sbjct: 60  RCPPLLFQANKRGETPLHLEARYGHSNVVKVLIDRAKALPADP---ESGVTKAKMMLRMT 116

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY-------RSSDM 173
           N+E++TALHEA  ++   VVEILTKEDP++ Y AN  G+TPLY+A              +
Sbjct: 117 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAVSIGFLMFSEEHGKV 176

Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSYF 204
           V  +L N  S  + GP+G+TALHAA+M + +
Sbjct: 177 VDGILGNCISVDYGGPDGRTALHAASMAANY 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127079|ref|XP_002329386.1| predicted protein [Populus trichocarpa] gi|224127100|ref|XP_002329395.1| predicted protein [Populus trichocarpa] gi|222870436|gb|EEF07567.1| predicted protein [Populus trichocarpa] gi|222870445|gb|EEF07576.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 105/211 (49%), Positives = 148/211 (70%), Gaps = 12/211 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAA AGN+ PF++  +  + +LLTA  +NTILHV ++++ SE  ST FV++ LE
Sbjct: 1   MDPVLFKAAEAGNIGPFENY-QTSLNQLLTAD-ENTILHVYLKNQSSEPESTDFVDKFLE 58

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
           +CP LL Q N +GETPLH+AA+ GHS++V+VL++RAK L     + ESG+  A+ M+RMT
Sbjct: 59  RCPPLLFQANKRGETPLHLAARNGHSNVVKVLIDRAKALP---ADPESGVTKAKMMLRMT 115

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY-------RSSDM 173
           N+E++TALHEA  ++   VVEILTKEDP++ Y AN  G+TPLY+AA             +
Sbjct: 116 NEEQDTALHEAARNRRSHVVEILTKEDPEFSYPANVHGETPLYIAASIGFLMFSEEHGKV 175

Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSYF 204
           V  +L N  S  + GP+G+TALHAA+M + +
Sbjct: 176 VDGILGNCISVDYGGPDGRTALHAASMAANY 206

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127098|ref|XP_002329394.1| predicted protein [Populus trichocarpa] gi|222870444|gb|EEF07575.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 11/204 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAAA G+++PF+   +  + +LLT   +NTILHV + ++  E   T FV  ILE
Sbjct: 7   MDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 64

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LL Q N KGE PLH+AA +GHS++V+VL++RAK L  ++E   SG+  A+ M+RMT
Sbjct: 65  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 121

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD----YR--SSDMV 174
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN  G+TPLY+AA     +R     +V
Sbjct: 122 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREEGGKVV 181

Query: 175 LALLENSTSASHEGPNGKTALHAA 198
             +L N  S  + GPNG+TAL+AA
Sbjct: 182 DGILGNCISVDYGGPNGRTALNAA 205

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127104|ref|XP_002329397.1| predicted protein [Populus trichocarpa] gi|222870447|gb|EEF07578.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (488), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 11/204 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAAA G+++PF+   +  + +LLT   +NTILHV + ++  E   T FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LL Q N KGE PLH+AA +GHS++V+VL++RAK L  ++E   SG+  A+ M+RMT
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 127

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD----YRS--SDMV 174
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN  G+TPLY+AA     +R     +V
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVV 187

Query: 175 LALLENSTSASHEGPNGKTALHAA 198
             +L N  S  + GPNG+TAL+AA
Sbjct: 188 DGILGNCISVDYGGPNGRTALNAA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127081|ref|XP_002329387.1| predicted protein [Populus trichocarpa] gi|222870437|gb|EEF07568.1| predicted protein [Populus trichocarpa]

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/204 (51%), Positives = 142/204 (69%), Gaps = 11/204 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAAA G+++PF+   +  + +LLT   +NTILHV + ++  E   T FV  ILE
Sbjct: 13  MDPVLFKAAAEGDIDPFEKY-QTCLDQLLTPD-ENTILHVYLGNQSREPELTDFVVIILE 70

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LL Q N KGE PLH+AA +GHS++V+VL++RAK L  ++E   SG+  A+ M+RMT
Sbjct: 71  MCPPLLFQANKKGEIPLHLAAAYGHSNVVKVLIDRAKALPTDSE---SGVTEAKKMLRMT 127

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD----YRS--SDMV 174
           N+E++TALHEA  H+   VVEILTKEDP++PYSAN  G+TPLY+AA     +R     +V
Sbjct: 128 NEEQDTALHEAARHRRSHVVEILTKEDPEFPYSANVHGETPLYIAASIITRWREERGKVV 187

Query: 175 LALLENSTSASHEGPNGKTALHAA 198
             +L N  S  + GPNG+TAL+AA
Sbjct: 188 DGILGNCISVDYGGPNGRTALNAA 211

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145572|ref|XP_002325691.1| predicted protein [Populus trichocarpa] gi|222862566|gb|EEF00073.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/211 (48%), Positives = 138/211 (65%), Gaps = 15/211 (7%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           M+P L+KAA AGN+ PFKD     +  LLT K KNTILHV + ++   + ST FV +I++
Sbjct: 1   MEPKLYKAAEAGNINPFKDRLPTSLNELLTPK-KNTILHVYLENQRKGSKSTDFVGQIID 59

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LLLQ N KGE PLH AA++G S++VRVL++RAK       +LESG+  A+ M+RMT
Sbjct: 60  MCPPLLLQANKKGEIPLHFAARYGRSNVVRVLIDRAKA---RPTDLESGVTEAKKMLRMT 116

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR----------- 169
           N+EK+TALH A  +    VVEILTKEDP++ YS N  G+TPLY+AA+ R           
Sbjct: 117 NEEKDTALHVAARNIQAQVVEILTKEDPEFSYSTNVHGETPLYIAANLRFNWRFKRHEEN 176

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAM 200
              ++  +L N  S  + G +G+TALHAA M
Sbjct: 177 RKKVINEILSNCKSVEYCGSHGRTALHAAGM 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127093|ref|XP_002329392.1| predicted protein [Populus trichocarpa] gi|222870442|gb|EEF07573.1| predicted protein [Populus trichocarpa]

 Score =  189 bits (479), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 101/202 (50%), Positives = 140/202 (69%), Gaps = 8/202 (3%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAA AG++ PF++  +  + +LLT   +NTILHV + ++  E   T FV++ILE
Sbjct: 5   MDPVLFKAAEAGDIGPFENY-QTCLDQLLTPD-ENTILHVYLGNQSREPEFTDFVDKILE 62

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LLLQ N KGE PLH+AA++GHS++V VL+ERA+ L     + ESG+  A+ M+RMT
Sbjct: 63  MCPPLLLQANKKGEIPLHLAARYGHSNVVGVLIERAEALP---TDPESGVSEAKKMLRMT 119

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD---MVLAL 177
           N E++TALHEA  +    VVEILT+EDP++ YSAN  G+TPLY+AA     +   ++  +
Sbjct: 120 NDEQDTALHEAARNMRSHVVEILTEEDPEFSYSANVHGETPLYIAASSWGQEQEKVIDEI 179

Query: 178 LENSTSASHEGPNGKTALHAAA 199
           L N  S  + GPNG+T LHAA+
Sbjct: 180 LANCISVDYGGPNGRTVLHAAS 201

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127089|ref|XP_002329390.1| predicted protein [Populus trichocarpa] gi|222870440|gb|EEF07571.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/218 (49%), Positives = 150/218 (68%), Gaps = 10/218 (4%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAA AGN+ PF++  +  + +LLT   +NTILHV + ++  E  ST FV+ ILE
Sbjct: 5   MDPLLFKAAEAGNIGPFENY-QTRLNQLLTPD-ENTILHVYLGNQSREPESTDFVDIILE 62

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LLLQ N KGE PLH+AA++GHS++V+VL++ AK L     + ESG+  A+ M+RM 
Sbjct: 63  MCPPLLLQANEKGEIPLHLAARYGHSNVVKVLIDCAKALP---TDPESGLTKAQKMLRMA 119

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY---RSSDMVL-A 176
           N+E++TALHEA  ++   +VEILTKEDP++ YSAN  G+TPLY+AA     R  + V+  
Sbjct: 120 NEEQDTALHEAARNRRSHLVEILTKEDPEFSYSANVHGETPLYIAAASSWGREREKVIDE 179

Query: 177 LLENSTSASHEGPNGKTALHAAA-MKSYFGKFSYTLSV 213
           +L N  S  + GPNG+TALHAA+ ++   G  S+ L +
Sbjct: 180 ILTNCISVDYGGPNGRTALHAASRVRDDGGDISHNLEI 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127096|ref|XP_002329393.1| predicted protein [Populus trichocarpa] gi|222870443|gb|EEF07574.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/213 (48%), Positives = 142/213 (66%), Gaps = 11/213 (5%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP LFKAA AGN+ PF++  +  + +L T   +NTILHV + ++ SE  ST FV++ILE
Sbjct: 5   MDPVLFKAAEAGNIGPFEN-DQTCLNQLFTPD-ENTILHVCLGNQSSEPESTYFVDKILE 62

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
            CP LLLQ N KGE PLH+AA++GHS++VRVL++RA+       + ESG+  A+ M+RMT
Sbjct: 63  MCPPLLLQANKKGEIPLHLAARYGHSNVVRVLIDRARA---RPTDPESGVTEAKKMLRMT 119

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS------SDMV 174
           N E++TALHEA  ++   VVEILTKEDP + YSAN   +TPLY+AA   S        +V
Sbjct: 120 NVEQDTALHEAARNRRGHVVEILTKEDPYFSYSANVHEETPLYIAASIVSRPSKELRKVV 179

Query: 175 LALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
             +L N  S  + GPNG+TALH ++     G+ 
Sbjct: 180 NEILRNCISVDYGGPNGRTALHGSSAVGDHGRI 212

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157601|ref|XP_002337868.1| predicted protein [Populus trichocarpa] gi|222869936|gb|EEF07067.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/240 (44%), Positives = 150/240 (62%), Gaps = 38/240 (15%)

Query: 1   MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILE 60
           MDP L+KAA  GN++PF++  +  + +LLT   +NTIL V +R++ +E  ST FV +ILE
Sbjct: 13  MDPVLYKAAEEGNIDPFEN-CQTCLDQLLTPD-ENTILLVYLRNQTTEPKSTDFVYKILE 70

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
           +CP LL Q N KGETPLH+AA++GH+++V++L+ERA+ L  +    ES +  A+ M+RMT
Sbjct: 71  RCPPLLFQANKKGETPLHLAARYGHANVVKLLIERAEALPSDP---ESRVTKAKMMLRMT 127

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY------------ 168
           N E++TALHEA  +    VVEILTKEDP++PYSAN DG+TPLY+AA              
Sbjct: 128 NGERDTALHEAARNNQSHVVEILTKEDPEFPYSANVDGETPLYIAASSWVQVREKVIDEI 187

Query: 169 -----------------RSSD----MVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
                            +SS+    +V  +L N  S  + GPNG+TALHAA+     G+ 
Sbjct: 188 LTNCISAKHYIAASTIPKSSEERGKVVDGILGNCISVDYGGPNGRTALHAASAVGDDGRI 247

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.833	0.300	0.330	4.9e-15
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.810	0.314	0.295	1.4e-13
TAIR|locus:2129690	670	ACD6 "AT4G14400" [Arabidopsis	0.770	0.255	0.295	1.4e-13
TAIR|locus:2129685	694	AT4G14390 "AT4G14390" [Arabido	0.761	0.243	0.302	2.4e-13
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.761	0.322	0.278	4.9e-12
RGD|1309620	1864	Ank1 "ankyrin 1, erythrocytic"	0.905	0.107	0.313	2.1e-11
UNIPROTKB|F1M3K5	1881	Ank1 "Protein Ank1" [Rattus no	0.905	0.106	0.313	2.2e-11
UNIPROTKB|F1M651	1888	Ank1 "Protein Ank1" [Rattus no	0.905	0.106	0.313	2.2e-11
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.747	0.310	0.269	2.3e-11
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.783	0.257	0.279	2.6e-11

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.9e-15, P = 4.9e-15
 Identities = 68/206 (33%), Positives = 105/206 (50%)

Query:     1 MDPNLFKAAAAGN-LEPFKDIAREV-IKRLLTAKTKNTILHVNIRSKESENASTKFVEEI 58
             M+P +  A  AG+ +   K I  +V + + L     N+ILH+      +       VE I
Sbjct:    37 MNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHI-----AAALGHVHIVEFI 91

Query:    59 LEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIR 118
             +   P LL  VN  GET LHVAA+ G  +IV +LV   + +  E+   ++        I 
Sbjct:    92 ISTFPNLLQNVNLMGETTLHVAARAGSLNIVEILV---RFIT-ESSSYDA-------FIA 140

Query:   119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
               +K  +TALH A+  ++V+V   L     D  +  NND  +PLYMA +    ++VL +L
Sbjct:   141 AKSKNGDTALHAALKGKHVEVAFCLVSVKHDVSFDKNNDEASPLYMAVEAGYHELVLKML 200

Query:   179 ENSTSASHEGP--NGKTALHAAAMKS 202
             E+S+S S      +GK+ +HAA MK+
Sbjct:   201 ESSSSPSILASMFSGKSVIHAA-MKA 225

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 57/193 (29%), Positives = 95/193 (49%)

Query:     1 MDPNLFKAAAAGN---LEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEE 57
             M+  +F   + G+   LE  K +   +    L +   +++LH+  R    E      V+ 
Sbjct:    81 MNTEVFSGLSDGDKECLEMLKGVGTPMA--CLKSDRGDSVLHLAARWGHLE-----LVKN 133

Query:    58 ILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
             I+ +CP L+L++N K + PLHVAA  GHS IV  LV           E E   R   +++
Sbjct:   134 IISECPCLVLELNFKDQLPLHVAAHAGHSAIVEALVASVTFFSDRLAE-EDRERLNPYVL 192

Query:   118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
             R  +K  NTALH A+  + +++   L  E+ +  +  NN+G + LYMA +     +V  +
Sbjct:   193 R--DKYGNTALHLAIEGRYMEMAASLVNENQNASFLENNEGISSLYMAVEAGDVTLVKEI 250

Query:   178 LENSTSASHEGPN 190
             L+ + +   EG N
Sbjct:   251 LKTAGNNDLEGRN 263

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2129690 ACD6 "AT4G14400" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 55/186 (29%), Positives = 95/186 (51%)

Query:     1 MDPNLFKAAAAGNLEPFKDI-AREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEIL 59
             M P +F   + G  E  + + +       + + T ++ILH+  +    E      V+EI+
Sbjct:    67 MTPEIFGGMSNGEKECLEKLRSNGTPMERVKSNTGDSILHIAAKWGHLE-----LVKEII 121

Query:    60 EKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVER--AKLLQHENEELESGIRTARHMI 117
              +CP LL + N+  +TPLHVA   GH+ +V  LV    + L     EE E G+    H++
Sbjct:   122 FECPCLLFEQNSSRQTPLHVATHGGHTKVVEALVASVTSALASLSTEESE-GLNP--HVL 178

Query:   118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY--RSSDMVL 175
             +  +++ NTAL+ A+  + +++   L   D D P+  NN G + LY A D   +  D+V 
Sbjct:   179 K--DEDGNTALYYAIEGRYLEMATCLVNADKDAPFLGNNKGISSLYEAVDAGNKFEDLVK 236

Query:   176 ALLENS 181
             A+L+ +
Sbjct:   237 AILKTT 242

GO:0008219 "cell death" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IMP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0016020 "membrane" evidence=ISS;IDA

GO:0009615 "response to virus" evidence=IEP

TAIR|locus:2129685 AT4G14390 "AT4G14390" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 55/182 (30%), Positives = 94/182 (51%)

Query:     1 MDPNLFKAAAAGNLEPFKDI-AREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEIL 59
             M P +F   + GN E  + + +R +    + + T ++ILH+ +     E      V+EI+
Sbjct:    98 MIPEVFSKISDGNKECLEKLRSRGISVARIKSNTGDSILHLAVTWGHLE-----LVKEIV 152

Query:    60 EKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHE--NEELESGIRTARHMI 117
              +CP LLL+ N+ G+TPLHVAA  GH+ IV   V           NEE E   R   +++
Sbjct:   153 CECPRLLLEQNSSGQTPLHVAAHSGHTTIVEAFVALVTFSSARLCNEESE---RMNPYVL 209

Query:   118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
             +  +K+ NTAL+ A+  +  ++   L   + D P+  N  G + L++A +     +V A+
Sbjct:   210 K--DKDGNTALYYAIEGRYFEMAVCLVNANQDAPFLGNKYGVSSLFVAINTGDVSLVKAI 267

Query:   178 LE 179
             L+
Sbjct:   268 LK 269

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 52/187 (27%), Positives = 97/187 (51%)

Query:    18 KDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPL 77
             K+I + + K++ TA+  +T LH  +R  +++       E    +   LL + N  GET L
Sbjct:     2 KEIKKTMTKQM-TARRDDTPLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETAL 60

Query:    78 HVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNV 137
             +VAA++G++D+V++L      ++H +  L +G +          K    A H A  + N+
Sbjct:    61 YVAAEYGYTDMVKIL------MKHSDSVL-AGTKA---------KNGFDAFHIAAKNGNL 104

Query:   138 DVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS-ASHEGPNGKTALH 196
              V+++L + +P+  ++ ++   T L+ AA     ++V  LL+     A+    NGKTALH
Sbjct:   105 QVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVCFLLDKGVDLAAIARSNGKTALH 164

Query:   197 AAAMKSY 203
             +AA   +
Sbjct:   165 SAARNGH 171

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1309620 Ank1 "ankyrin 1, erythrocytic" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 70/223 (31%), Positives = 97/223 (43%)

Query:     5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
             L  AA AG+ E  K + +   K    AK   T LH   R        T  V+ +LE    
Sbjct:   437 LHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAARI-----GHTSMVKLLLENDAS 491

Query:    65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVER----AKLLQHENEELESG-----IRTAR- 114
               L   A G TPLH AA+ GH D    L+E+    A + +     L        +R A  
Sbjct:   492 PNLATTA-GHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRLAEL 550

Query:   115 ---HMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                H        KN  T LH AV H N+D+V++L       P+S   +G TPL++AA   
Sbjct:   551 LLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVQLLLPRGGS-PHSPAWNGYTPLHIAAKQN 609

Query:   170 SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS 212
               ++  +LL+   SA+ E   G T LH AA + +    +  LS
Sbjct:   610 QIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLS 652

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=IMP

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO

GO:0015672 "monovalent inorganic cation transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0031430 "M band" evidence=IDA

GO:0031672 "A band" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048821 "erythrocyte development" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1M3K5 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 70/223 (31%), Positives = 97/223 (43%)

Query:     5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
             L  AA AG+ E  K + +   K    AK   T LH   R        T  V+ +LE    
Sbjct:   447 LHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAARI-----GHTSMVKLLLENDAS 501

Query:    65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVER----AKLLQHENEELESG-----IRTAR- 114
               L   A G TPLH AA+ GH D    L+E+    A + +     L        +R A  
Sbjct:   502 PNLATTA-GHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRLAEL 560

Query:   115 ---HMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                H        KN  T LH AV H N+D+V++L       P+S   +G TPL++AA   
Sbjct:   561 LLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVQLLLPRGGS-PHSPAWNGYTPLHIAAKQN 619

Query:   170 SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS 212
               ++  +LL+   SA+ E   G T LH AA + +    +  LS
Sbjct:   620 QIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLS 662

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1M651 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 172 (65.6 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 70/223 (31%), Positives = 97/223 (43%)

Query:     5 LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
             L  AA AG+ E  K + +   K    AK   T LH   R        T  V+ +LE    
Sbjct:   437 LHMAARAGHTEVAKYLLQNKAKANAKAKDDQTPLHCAARI-----GHTSMVKLLLENDAS 491

Query:    65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVER----AKLLQHENEELESG-----IRTAR- 114
               L   A G TPLH AA+ GH D    L+E+    A + +     L        +R A  
Sbjct:   492 PNLATTA-GHTPLHTAAREGHVDTALALLEKEASQACMTKKGFTPLHVAAKYGKVRLAEL 550

Query:   115 ---HMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                H        KN  T LH AV H N+D+V++L       P+S   +G TPL++AA   
Sbjct:   551 LLEHDAHPNAAGKNGLTPLHVAVHHNNLDIVQLLLPRGGS-PHSPAWNGYTPLHIAAKQN 609

Query:   170 SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS 212
               ++  +LL+   SA+ E   G T LH AA + +    +  LS
Sbjct:   610 QIEVARSLLQYGGSANAESVQGVTPLHLAAQEGHTEMVALLLS 652

GO:0007165 "signal transduction" evidence=IEA

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.3e-11, P = 2.3e-11
 Identities = 48/178 (26%), Positives = 84/178 (47%)

Query:    36 TILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVER 95
             T LH+ ++    E      V++I+E  P L+   N K +TPLH+AA+ GH+ I+ +++E 
Sbjct:    29 TFLHLAVKLGNEE-----LVKKIVEIHPSLVSSTNTKSDTPLHLAARLGHTSILLLMLES 83

Query:    96 AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP-DYPYSA 154
                     E LE  +     +  M NK+  T LH AV + +V+ +     + P  +    
Sbjct:    84 TA---ESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINKAPLSFDSVT 140

Query:   155 NNDGKTPLYMAADYRSSDMVLALLENSTSAS--HE-GPNGKTALHAAAMKSYFGKFSY 209
                 +T  ++AA ++  +  + + +N+      +E    G T LHAAA   +    SY
Sbjct:   141 LQTSETVFHLAARHKKMEAFIFMAKNANLRRLLYELDGEGNTVLHAAASVGFLSLVSY 198

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 52/186 (27%), Positives = 89/186 (47%)

Query:     1 MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTK-NTILHVNIRSKESENASTKFVEEIL 59
             M P    A  AG+    +D+  +V   L +     NT+LH+   +       T  V  IL
Sbjct:    97 MGPKTIAAVRAGDETYLRDMKFDVNIALSSVNDHGNTMLHLAAAA-----GHTDLVCYIL 151

Query:    60 EKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRM 119
                P LL++ N+ GE  LHVAA  GH  +V  LV   K +       + G+  A+ +   
Sbjct:   152 NAYPGLLMKSNSMGEVALHVAAGAGHLAVVEALVSFIKDISCN----KPGV--AKKIYFA 205

Query:   120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
              ++ ++ ALH ++  +++ V   L   +    + ANNDG +PLY+A +   +D+   + +
Sbjct:   206 KDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLAVEAGQADLAKTMWQ 265

Query:   180 NSTSAS 185
             +S + S
Sbjct:   266 HSNNGS 271

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	222
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-19
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	2e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	4e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	5e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.004
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.004
smart00248	30	smart00248, ANK, ankyrin repeats	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 87.8 bits (218), Expect = 3e-22
 Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 19/137 (13%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
             +  G TPLH+AA  GH ++V++L+E                      +   + +  T 
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENG------------------ADVNAKDNDGRTP 43

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
           LH A  + ++++V++L ++  D   + + DG TPL++AA   + D+V  LL++    +  
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGAD-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

Query: 188 GPNGKTALHAAAMKSYF 204
             +G+T LH AA   + 
Sbjct: 103 DKDGRTPLHLAAKNGHL 119

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 80.9 bits (200), Expect = 1e-19
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 25/147 (17%)

Query: 32  KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRV 91
           +   T LH+   +        + V+ +LE    +  + +  G TPLH+AAK GH +IV++
Sbjct: 5   EDGRTPLHLAASNG-----HLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKL 58

Query: 92  LVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP 151
           L+E+                     +   +K+ NT LH A  + N+DVV++L K   D  
Sbjct: 59  LLEKGAD------------------VNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-V 99

Query: 152 YSANNDGKTPLYMAADYRSSDMVLALL 178
            + + DG+TPL++AA     ++V  LL
Sbjct: 100 NARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.0 bits (164), Expect = 2e-14
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 1/101 (0%)

Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
             +++  T LH A  + +++VV++L +   D   + +NDG+TPL++AA     ++V  LL
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD-VNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 179 ENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI 219
           E     +    +G T LH AA           L  G  +  
Sbjct: 61  EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA 101

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.4 bits (152), Expect = 1e-12
 Identities = 34/139 (24%), Positives = 62/139 (44%), Gaps = 24/139 (17%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA+ G+LE  K +               T LH+  +     N   + V+ +LEK   
Sbjct: 11  LHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAK-----NGHLEIVKLLLEKGAD 65

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
           +  + +  G TPLH+AA+ G+ D+V++L++                      +   +K+ 
Sbjct: 66  VNAR-DKDGNTPLHLAARNGNLDVVKLLLKH------------------GADVNARDKDG 106

Query: 125 NTALHEAVCHQNVDVVEIL 143
            T LH A  + +++VV++L
Sbjct: 107 RTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 28/104 (26%), Positives = 53/104 (50%), Gaps = 21/104 (20%)

Query: 77  LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN 136
           LH+AAK G+ ++V++L+E                        +   + +TALH A  + N
Sbjct: 1   LHLAAKNGNLELVKLLLE--------------------KGADVNLGDTDTALHLAARNGN 40

Query: 137 VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           +++V++L +   D   + + DG T L++AA   + ++V  LLE+
Sbjct: 41  LEIVKLLLEHGAD-VNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 21/99 (21%)

Query: 51  STKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
           + + V+ +LEK   + L      +T LH+AA+ G+ +IV++L             LE G 
Sbjct: 9   NLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLL-------------LEHGA 52

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 149
                 +   +K+ NTALH A  + N+++V++L +   D
Sbjct: 53  D-----VNAKDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 3/77 (3%)

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
           LH A  + N+++V++L ++  D      +   T L++AA   + ++V  LLE+    + +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 188 GPNGKTALHAAAMKSYF 204
             +G TALH AA     
Sbjct: 58  DKDGNTALHLAARNGNL 74

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 26/207 (12%)

Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
                 A    N      +   ++  L    +  +   +N+  + +   +    E +L+ 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 62  C-PLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
                L   +  G  PLH AA  G   IV++L             L SG       +   
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLL-------------LASGAD-----VNAK 102

Query: 121 NKEKNTALHEAV-----CHQNVDVVEIL--TKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
           + + +T LH A         N++V ++L     D D     + DG TPL+ AA    +D+
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 174 VLALLENSTSASHEGPNGKTALHAAAM 200
           V  LLE     +     G TAL  AA 
Sbjct: 163 VELLLEAGADPNSRNSYGVTALDPAAK 189

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 5  LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
          L  AA  GNLE  K +  +     +     +T LH+  R     N + + V+ +LE    
Sbjct: 1  LHLAAKNGNLELVKLLLEKGAD--VNLGDTDTALHLAAR-----NGNLEIVKLLLEHGA- 52

Query: 65 LLLQVNAK---GETPLHVAAKFGHSDIVRVLVER 95
              VNAK   G T LH+AA+ G+ +IV++L+E 
Sbjct: 53 ---DVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83

Length = 91

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 37/162 (22%), Positives = 72/162 (44%), Gaps = 16/162 (9%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERA--------KLLQHE--NEELESGIRTARHMI 117
            +N K   PL  A K G  DI+++L++            ++ +     L+ GI      +
Sbjct: 63  HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID-----V 117

Query: 118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
            + + E  T LH A+   +++ +++L +   D     +N G  P+++A  +   D++  L
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDN-GCYPIHIAIKHNFFDIIKLL 176

Query: 178 LENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI 219
           LE    A+ +  NG++ LH AA    +      +  G  I+ 
Sbjct: 177 LEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMN 218

Length = 434

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 6/89 (6%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA  G+LE  K +  +        K  NT LH+  R     N +   V+ +L+    
Sbjct: 44  LHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR-----NGNLDVVKLLLKHGAD 98

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLV 93
           +  + +  G TPLH+AAK GH ++V++L+
Sbjct: 99  VNAR-DKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 18/74 (24%)

Query: 58  ILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
           +LE  P+ L   +  G TPLH+AAK+G  ++V+ L++                      +
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP------------------GVDL 42

Query: 118 RMTNKEKNTALHEA 131
            + + +  TAL  A
Sbjct: 43  NLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 4e-05
 Identities = 43/190 (22%), Positives = 76/190 (40%), Gaps = 33/190 (17%)

Query: 16  PFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEE-ILEKCPLLL---LQVNA 71
           P   I +++IK +L          VNI+  E +      +++  LE   +L      VN 
Sbjct: 98  PIPCIEKDMIKTILDCGID-----VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI 152

Query: 72  K---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           +   G  P+H+A K    DI+++L+E+                       + +    + L
Sbjct: 153 EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN------------------VKDNNGESPL 194

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A  + +   +++L            N G TPL+ A  +  S   + LL N+ S + + 
Sbjct: 195 HNAAEYGDYACIKLLIDHGNHIMNKCKN-GFTPLHNAIIHNRS--AIELLINNASINDQD 251

Query: 189 PNGKTALHAA 198
            +G T LH A
Sbjct: 252 IDGSTPLHHA 261

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 18/69 (26%)

Query: 75  TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
           T LH AA  G  ++V+ L             LE G+      I  T+++ NTALH A  +
Sbjct: 3   TALHKAAISGRLELVKYL-------------LEKGVD-----INRTDEDGNTALHIAAEN 44

Query: 135 QNVDVVEIL 143
            N++V+++L
Sbjct: 45  GNLEVLKLL 53

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 38.7 bits (91), Expect = 7e-05
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 72 KGETPLHVAAKFGHSDIVRVLVER 95
           G TPLH+AA+ GH ++V++L+E 
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEA 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 40/178 (22%), Positives = 79/178 (44%), Gaps = 27/178 (15%)

Query: 21  AREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA 80
           A ++IK L+      +IL +    K+        ++ IL+ C + +   +A+ +T LH A
Sbjct: 80  AHDIIKLLIDNGVDTSILPIPCIEKDM-------IKTILD-CGIDVNIKDAELKTFLHYA 131

Query: 81  AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVV 140
            K G  + +++L E                      + + +      +H A+ H   D++
Sbjct: 132 IKKGDLESIKMLFEY------------------GADVNIEDDNGCYPIHIAIKHNFFDII 173

Query: 141 EILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
           ++L  E   Y    +N+G++PL+ AA+Y     +  L+++     ++  NG T LH A
Sbjct: 174 KLLL-EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNA 230

Length = 434

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 23/129 (17%)

Query: 69  VNAKGETPLHVAAKFGHSD--IVRVLVE---------RAKLLQHENEELESGIRTARHMI 117
            N+ GE  LH+  +    D  I+++L++         R   L      L  G+      I
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL------LSYGVP-----I 185

Query: 118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
            + +    T LH AV + N + V+ L     + P   N  G TPL++A    + ++   L
Sbjct: 186 NIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLL 244

Query: 178 LENSTSASH 186
           L N  S   
Sbjct: 245 LNNGPSIKT 253

Length = 422

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 35/137 (25%), Positives = 56/137 (40%), Gaps = 27/137 (19%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           ++KG TPLH+AA  G+ D V V      LL+H               + + +   NTAL 
Sbjct: 555 DSKGRTPLHIAASKGYEDCVLV------LLKHACN------------VHIRDANGNTALW 596

Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTP---LYMAADYRSSDMVLALLENSTSASH 186
            A+  ++  +  IL      Y +++ +D       L  AA       +  LL+   +   
Sbjct: 597 NAISAKHHKIFRIL------YHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDS 650

Query: 187 EGPNGKTALHAAAMKSY 203
           E   G TAL  A  + +
Sbjct: 651 EDHQGATALQVAMAEDH 667

Length = 823

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.3 bits (87), Expect = 3e-04
 Identities = 17/56 (30%), Positives = 29/56 (51%)

Query: 143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
           L +  P    + + +G TPL++AA Y + ++V  LL+     +    +G TAL  A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 4e-04
 Identities = 44/188 (23%), Positives = 72/188 (38%), Gaps = 32/188 (17%)

Query: 23  EVIKRLLTAKTKNTILHVNIRS---KESENASTKFVEEILEKCPLLLLQVNAKGETPLHV 79
           E IK L+       + + +I S      E    K VEE+L+            G TPLH+
Sbjct: 49  EAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHL 108

Query: 80  AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
           A      DI+++L+ R                       + N +K + LH AV   ++  
Sbjct: 109 ATILKKLDIMKLLIARGADPD------------------IPNTDKFSPLHLAVMMGDIKG 150

Query: 140 VEILTKEDPDYPYSANND-----GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA 194
           +E+L        + A  D     G TPL +A       +   LL++  +  + G NG  A
Sbjct: 151 IELLID------HKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVA 204

Query: 195 LHAAAMKS 202
               A+++
Sbjct: 205 ALCYAIEN 212

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 2/83 (2%)

Query: 117 IRMTNKEK-NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
           I M ++ K NTALH A  +++  + E+L     +     +    +PL+ A  + +  +V 
Sbjct: 160 INMKDRHKGNTALHYATENKDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVKHYNKPIVH 218

Query: 176 ALLENSTSASHEGPNGKTALHAA 198
            LLEN  S       G T LH +
Sbjct: 219 ILLENGASTDARDKCGNTPLHIS 241

Length = 477

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 43/174 (24%), Positives = 65/174 (37%), Gaps = 35/174 (20%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDI--V 89
            T LHV +      N + K +  +L K       VNA    G TPL V  K  ++++  +
Sbjct: 118 RTPLHVYLSGF---NINPKVIRLLLRKG----ADVNALDLYGMTPLAVLLKSRNANVELL 170

Query: 90  RVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHE--AVCHQNVDVVEILTKED 147
           R+L++    +             A      +       LH           +V  L +  
Sbjct: 171 RLLIDAGADV------------YAVDDRFRS------LLHHHLQSFKPRARIVRELIRAG 212

Query: 148 PDYPYSANNDGKTPLYMAADYRSSD--MVLALLENSTSASHEGPNGKTALHAAA 199
            D P + +  G TPL+  A   S    +VL LL    S +     G+T LH AA
Sbjct: 213 CD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA 265

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 34.1 bits (79), Expect = 0.004
 Identities = 12/39 (30%), Positives = 27/39 (69%), Gaps = 1/39 (2%)

Query: 55 VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLV 93
          V+ +LEK  + + + +  G T LH+AA+ G+ +++++L+
Sbjct: 17 VKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 33.8 bits (78), Expect = 0.004
 Identities = 11/24 (45%), Positives = 19/24 (79%)

Query: 72 KGETPLHVAAKFGHSDIVRVLVER 95
           G TPLH+AA+ G+ ++V++L+E 
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEH 24

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 33.3 bits (77), Expect = 0.004
 Identities = 10/24 (41%), Positives = 20/24 (83%)

Query: 72 KGETPLHVAAKFGHSDIVRVLVER 95
           G TPLH+AA+ G+ ++V++L+++
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDK 24

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03100	480	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02874	434	ankyrin repeat protein; Provisional	100.0
PHA03095	471	ankyrin-like protein; Provisional	100.0
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02946	446	ankyin-like protein; Provisional	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
KOG0510	929	consensus Ankyrin repeat protein [General function	100.0
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	100.0
PHA02859	209	ankyrin repeat protein; Provisional	100.0
PHA02798	489	ankyrin-like protein; Provisional	100.0
PHA02878	477	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	100.0
PHA02876	682	ankyrin repeat protein; Provisional	100.0
PHA02989	494	ankyrin repeat protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.98
PHA02917	661	ankyrin-like protein; Provisional	99.98
PHA02795	437	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG0508	615	consensus Ankyrin repeat protein [General function	99.97
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02730	672	ankyrin-like protein; Provisional	99.96
PHA02792	631	ankyrin-like protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.94
PHA02792	631	ankyrin-like protein; Provisional	99.94
PHA02736	154	Viral ankyrin protein; Provisional	99.93
PHA02743	166	Viral ankyrin protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.93
KOG0514	452	consensus Ankyrin repeat protein [General function	99.92
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.92
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.91
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.91
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.88
KOG0514	452	consensus Ankyrin repeat protein [General function	99.88
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.85
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.82
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.8
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.79
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.78
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.72
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.7
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.6
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.54
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.54
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.42
PF13606	30	Ank_3: Ankyrin repeat	99.27
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.19
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.16
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.1
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.07
PF13606	30	Ank_3: Ankyrin repeat	99.07
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.0
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.97
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.94
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.93
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.89
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.86
KOG0522	560	consensus Ankyrin repeat protein [General function	98.8
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.76
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.75
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.65
KOG0511	516	consensus Ankyrin repeat protein [General function	98.56
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.56
KOG0522	560	consensus Ankyrin repeat protein [General function	98.55
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.47
KOG0511	516	consensus Ankyrin repeat protein [General function	98.44
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.37
KOG2384	223	consensus Major histocompatibility complex protein	98.28
KOG2384	223	consensus Major histocompatibility complex protein	98.17
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.1
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.95
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.86
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.72
KOG2505	591	consensus Ankyrin repeat protein [General function	97.48
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.44
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	97.07
KOG2505	591	consensus Ankyrin repeat protein [General function	96.99
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.77
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.68
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.25
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.15
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.18

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.2e-42  Score=226.94  Aligned_cols=196  Identities=18%  Similarity=0.145  Sum_probs=179.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHH-H-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKR-L-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHV   79 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~-~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~   79 (222)
                      .++.+.+++......++.+++..++. + ..|.+|+|||||  ||..|+.+++.+|++   ..+..++.+|..|+||||+
T Consensus         4 ~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHw--a~S~g~~eiv~fLls---q~nv~~ddkDdaGWtPlhi   78 (226)
T KOG4412|consen    4 ASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHW--ACSFGHVEIVYFLLS---QPNVKPDDKDDAGWTPLHI   78 (226)
T ss_pred             cchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeee--eeecCchhHHHHHHh---cCCCCCCCccccCCchhhh
Confidence            46778888888888999999977643 3 556699999999  999999999999987   4667788889999999999


Q ss_pred             HHHhCCHHHHHHHHHh-hhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCC
Q 027562           80 AAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDG  158 (222)
Q Consensus        80 a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  158 (222)
                      |+..|+.++++.|+.. |++++.                  .+..|.|+||+|+..|+.+++++|++.|+. ++.+|..|
T Consensus        79 a~s~g~~evVk~Ll~r~~advna------------------~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~  139 (226)
T KOG4412|consen   79 AASNGNDEVVKELLNRSGADVNA------------------TTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQG  139 (226)
T ss_pred             hhhcCcHHHHHHHhcCCCCCcce------------------ecCCCcceehhhhcCChhhHHHHHHhcCCC-Cccccccc
Confidence            9999999999999998 777766                  889999999999999999999999999988 77999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          159 KTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       159 ~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .||||.|+.-|..+++++|+..|+.+|.+|+.|+||||+|.-.++.++..+|+++||++++.+
T Consensus       140 qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  140 QTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             CchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            999999999999999999999999999999999999999988899999999999999998754

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=3.3e-41  Score=246.66  Aligned_cols=192  Identities=18%  Similarity=0.139  Sum_probs=173.6

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||+|+..|+.++++.|++.|.+++..  +|.||||+  |+..|+.+++++|++    .+..++..|..|.||||+|+
T Consensus        31 ~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~--d~~TpLh~--Aa~~g~~eiV~lLL~----~Gadvn~~d~~G~TpLh~Aa  102 (284)
T PHA02791         31 HSALYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQ--AATLEDTKIVKILLF----SGMDDSQFDDKGNTALYYAV  102 (284)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCcCCCcCC--CCCCHHHH--HHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence            58999999999999999999999877543  47999999  999999999999987    45667889999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccC-chHhHHHHhcCChHHHHHHHhcCCCCCCCCC-CCCC
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK-NTALHEAVCHQNVDVVEILTKEDPDYPYSAN-NDGK  159 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~  159 (222)
                      ..|+.+++++|+++|++++.                  .+..| .||+|+|+..|+.+++++|++.++..   .+ ..|.
T Consensus       103 ~~g~~eivk~Ll~~gadin~------------------~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~---~d~~~g~  161 (284)
T PHA02791        103 DSGNMQTVKLFVKKNWRLMF------------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST---FDLAILL  161 (284)
T ss_pred             HcCCHHHHHHHHHCCCCcCc------------------cCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---cccccCc
Confidence            99999999999999988766                  56666 58999999999999999999987652   23 3589


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccH-HHHHHHhccchhHHHHHhcCCccccccC
Q 027562          160 TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA-LHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       160 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      ||||+|+..|+.+++++|+++|++++.++..|.|| ||+|+..|+.+++++|+++||+++..++
T Consensus       162 TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        162 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            99999999999999999999999999999999987 9999999999999999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-38  Score=245.39  Aligned_cols=212  Identities=18%  Similarity=0.140  Sum_probs=150.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      +++|+.|+..|+.+++++|++.|++++..+..|.||||+  |+..|+.+++++|++.    +...+..+..+.||||.|+
T Consensus         3 ~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~--A~~~~~~~~v~~Ll~~----ga~~~~~~~~~~t~L~~A~   76 (413)
T PHA02875          3 QVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKL--AMKFRDSEAIKLLMKH----GAIPDVKYPDIESELHDAV   76 (413)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHH--HHHcCCHHHHHHHHhC----CCCccccCCCcccHHHHHH
Confidence            467888888888888888888888888777788888888  8888888888888774    3334555566777777777


Q ss_pred             HhCCHHHHHHHHHhhhhhhhh-hhHhhhhhhhH---------------HHHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           82 KFGHSDIVRVLVERAKLLQHE-NEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~-~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      ..|+.++++.|++.|...+.. +..+.+++..+               +..++..+..|.||||+|+..|+.+++++|++
T Consensus        77 ~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~  156 (413)
T PHA02875         77 EEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID  156 (413)
T ss_pred             HCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            777777777777776543221 11111111111               11223356677777777777777777777777


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCc-cHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK-TALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      .|++ .+..|..|.||||+|+..++.+++++|+++|++++..+..|. ||+|+|+..++.+++++|+++|||+++.
T Consensus       157 ~g~~-~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        157 HKAC-LDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             cCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchH
Confidence            7776 556677777787777777777777777777777777776654 6777777777777778888888777753

>PHA02875 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.1e-37  Score=243.17  Aligned_cols=206  Identities=15%  Similarity=0.107  Sum_probs=163.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..+.||||.  |+..|+.++++.|++.   +....+..+..|.||||+|+
T Consensus        36 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~--A~~~g~~~~v~~Ll~~---~~~~~~~~~~~g~tpL~~A~  110 (413)
T PHA02875         36 ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHD--AVEEGDVKAVEELLDL---GKFADDVFYKDGMTPLHLAT  110 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHH--HHHCCCHHHHHHHHHc---CCcccccccCCCCCHHHHHH
Confidence            478999999999999999999888777777788888888  8888888888887763   22223445567888888888


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ..|+.+++++|++.|++++.++..+.+++..+               ...++..+..|.||||+|+..|+.+++++|++.
T Consensus       111 ~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~  190 (413)
T PHA02875        111 ILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS  190 (413)
T ss_pred             HhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            88888888888888888877666555555433               123445788999999999999999999999999


Q ss_pred             CCCCCCCCCCCC-CCHHHHHHHcCCHHHHHHHHhcCCCCccC---CCCCccHHHHHHHh---ccchhHHHHHhc
Q 027562          147 DPDYPYSANNDG-KTPLYMAADYRSSDMVLALLENSTSASHE---GPNGKTALHAAAMK---SYFGKFSYTLSV  213 (222)
Q Consensus       147 ~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~---~~~g~t~l~~a~~~---~~~~~~~~Ll~~  213 (222)
                      |++ ++..+..| .||+|+|+..++.+++++|+++|++++..   +..+.||++.++..   ...+.++.++.+
T Consensus       191 ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~~~~~~~~~~~~li~~  263 (413)
T PHA02875        191 GAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNMCTNLESEAIDALIAD  263 (413)
T ss_pred             CCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhhcCCcccHHHHHHHHH
Confidence            999 44556555 58999999999999999999999999865   56789999987654   345677777653

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-39  Score=210.31  Aligned_cols=185  Identities=23%  Similarity=0.241  Sum_probs=165.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHH-HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAR-EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .||||+||.-|..+++.+|+. .+..++.+|..||||||+  |+..|+.++++.|+.   +.+.+++..+..|+||||+|
T Consensus        39 Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhi--a~s~g~~evVk~Ll~---r~~advna~tn~G~T~LHyA  113 (226)
T KOG4412|consen   39 RTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHI--AASNGNDEVVKELLN---RSGADVNATTNGGQTCLHYA  113 (226)
T ss_pred             CceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhh--hhhcCcHHHHHHHhc---CCCCCcceecCCCcceehhh
Confidence            479999999999999999995 556666778899999999  999999888888766   56888999999999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|+.++.                  +|+.|.||||.|+..|.++++++|++.|+. .+.+|..|+|
T Consensus       114 agK~r~eIaqlLle~ga~i~~------------------kD~~~qtplHRAAavGklkvie~Li~~~a~-~n~qDk~G~T  174 (226)
T KOG4412|consen  114 AGKGRLEIAQLLLEKGALIRI------------------KDKQGQTPLHRAAAVGKLKVIEYLISQGAP-LNTQDKYGFT  174 (226)
T ss_pred             hcCChhhHHHHHHhcCCCCcc------------------cccccCchhHHHHhccchhhHHHHHhcCCC-CCcccccCcc
Confidence            999999999999999988776                  899999999999999999999999999988 6799999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHH
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL  211 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  211 (222)
                      |||.|.-.++.+....|++.|++++..|+.| ||+..|+..-...+.++++
T Consensus       175 pL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~~l~~alk~~~l  224 (226)
T KOG4412|consen  175 PLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACNELLEALKEQML  224 (226)
T ss_pred             HHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHHHHHHHHHHHhh
Confidence            9999988889999999999999999999988 9998887654444444333

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=1.3e-37  Score=246.48  Aligned_cols=196  Identities=24%  Similarity=0.263  Sum_probs=169.3

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHH------------------------
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEI------------------------   58 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~------------------------   58 (222)
                      ||||.|+..|+.++|++|++.|++++..+..|.||||+  ||..|+.+.++.+++.                        
T Consensus        39 tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~--A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         39 IPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHI--ICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             chHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            79999999999999999999999999999999999999  8777776665555432                        


Q ss_pred             ------------------------------------HHhCCccccccccC-CChHHHHHHHhCCHHHHHHHHHhhhhhhh
Q 027562           59 ------------------------------------LEKCPLLLLQVNAK-GETPLHVAAKFGHSDIVRVLVERAKLLQH  101 (222)
Q Consensus        59 ------------------------------------~~~~~~~~~~~~~~-~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  101 (222)
                                                          +.+.+..++..+.. |.||||.|+..|+.+++++|++.|++++.
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~  196 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI  196 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC
Confidence                                                22234455666777 99999999999999999999999988776


Q ss_pred             hhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhc
Q 027562          102 ENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY-RSSDMVLALLEN  180 (222)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~  180 (222)
                                        .+..|.||||.|+..++.+++++|++.|++ .+..|..|+||||+|+.. ++.+++++|+++
T Consensus       197 ------------------~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~  257 (477)
T PHA02878        197 ------------------PDKTNNSPLHHAVKHYNKPIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEH  257 (477)
T ss_pred             ------------------cCCCCCCHHHHHHHhCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc
Confidence                              788999999999999999999999999998 668899999999999875 689999999999


Q ss_pred             CCCCccCCC-CCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          181 STSASHEGP-NGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       181 g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |++++.++. .|.||||+|  .++.+++++|+++|||+++.+
T Consensus       258 gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        258 GVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             CCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            999998876 799999999  467789999999999999765

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.4e-37  Score=240.85  Aligned_cols=215  Identities=18%  Similarity=0.140  Sum_probs=160.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHH-------------------HhC
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEIL-------------------EKC   62 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~-------------------~~~   62 (222)
                      .||||.|+..|+.++|++|++.|++++..+..|.||||.  |+..|+.+++++|++..                   ...
T Consensus        36 ~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~--A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         36 TTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLT--AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            489999999999999999999999998888899999999  99999999999987642                   233


Q ss_pred             CccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhhhccccCchH
Q 027562           63 PLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTA  127 (222)
Q Consensus        63 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~  127 (222)
                      +..++..+..|.||||.|+..|+.+++++|++.|++++.++..+.+++..+               ...++..+..|.||
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tp  193 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP  193 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            456777888999999999999999999999999998887544444443322               11123345556666


Q ss_pred             hHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc-cchh
Q 027562          128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS-YFGK  206 (222)
Q Consensus       128 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~-~~~~  206 (222)
                      +|.|+..|+.+++++|++.|++ .+..+..|.||||.|+..+. +.+++|+ .|++++.++..|+||||+|+..+ +.++
T Consensus       194 L~~A~~~g~~~iv~~Ll~~g~~-i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~TpLh~A~~~~~~~~i  270 (434)
T PHA02874        194 LHNAAEYGDYACIKLLIDHGNH-IMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTPLHHAINPPCDIDI  270 (434)
T ss_pred             HHHHHHcCCHHHHHHHHhCCCC-CcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCHHHHHHhcCCcHHH
Confidence            6666666666666666666655 33445556666666655443 3344443 45667777888889999998765 7789


Q ss_pred             HHHHHhcCCcccccc
Q 027562          207 FSYTLSVGISILISF  221 (222)
Q Consensus       207 ~~~Ll~~ga~~~~~~  221 (222)
                      +++|+++|+++++.+
T Consensus       271 v~~Ll~~gad~n~~d  285 (434)
T PHA02874        271 IDILLYHKADISIKD  285 (434)
T ss_pred             HHHHHHCcCCCCCCC
Confidence            999999999998765

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=240.37  Aligned_cols=211  Identities=20%  Similarity=0.162  Sum_probs=173.0

Q ss_pred             ChHHHH-----HHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhh--cccccccHHHHHHHHHhCCccccccccCCC
Q 027562            2 DPNLFK-----AAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRS--KESENASTKFVEEILEKCPLLLLQVNAKGE   74 (222)
Q Consensus         2 ~~~l~~-----A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   74 (222)
                      .||||.     |+..|+.++++.|++.|++++..+..|.||||+  |+  ..|+.+++++|++    .+..++..+..|.
T Consensus        69 ~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~--A~~~~~~~~~iv~~Ll~----~g~~~~~~~~~g~  142 (480)
T PHA03100         69 STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLY--AISKKSNSYSIVEYLLD----NGANVNIKNSDGE  142 (480)
T ss_pred             cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhH--HHhcccChHHHHHHHHH----cCCCCCccCCCCC
Confidence            367788     888888888888888877777777778888888  77  7777777777766    3455666777788


Q ss_pred             hHHHHHHHhC--CHHHHHHHHHhhhhhhhhhhHhhhhhhhHH---------------HHhhhccccC------chHhHHH
Q 027562           75 TPLHVAAKFG--HSDIVRVLVERAKLLQHENEELESGIRTAR---------------HMIRMTNKEK------NTALHEA  131 (222)
Q Consensus        75 t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~------~~~l~~a  131 (222)
                      ||||.|+..|  +.+++++|+++|++++.++..+.+++..+.               ..++..+..+      .+|+|.|
T Consensus       143 t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a  222 (480)
T PHA03100        143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIA  222 (480)
T ss_pred             cHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHH
Confidence            8888888887  778888888888777766655555544331               1122345556      8999999


Q ss_pred             HhcCC--hHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHH
Q 027562          132 VCHQN--VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSY  209 (222)
Q Consensus       132 ~~~~~--~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  209 (222)
                      +..++  .+++++|++.|++ .+..|..|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++
T Consensus       223 ~~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~  301 (480)
T PHA03100        223 ACYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKL  301 (480)
T ss_pred             HHhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHH
Confidence            99999  9999999999998 66889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCcccc
Q 027562          210 TLSVGISILI  219 (222)
Q Consensus       210 Ll~~ga~~~~  219 (222)
                      |+++|++++.
T Consensus       302 Ll~~g~~i~~  311 (480)
T PHA03100        302 LLNNGPSIKT  311 (480)
T ss_pred             HHhcCCCHHH
Confidence            9999999875

>PHA03100 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-36  Score=239.46  Aligned_cols=215  Identities=24%  Similarity=0.207  Sum_probs=187.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHh---hhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNI---RSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~---a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      .||||.|+..|+.++|++|++.|.+++..+..|.||||++.   |+..++.+++++|++    .+..++..+..|.||||
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~----~ga~i~~~d~~g~tpL~  111 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE----YGANVNAPDNNGITPLL  111 (480)
T ss_pred             chhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHH----CCCCCCCCCCCCCchhh
Confidence            47999999999999999999999999988989999999833   456788888888877    45566888999999999


Q ss_pred             HHH--HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH-----------------HHHhhhccccCchHhHHHHhcCChHH
Q 027562           79 VAA--KFGHSDIVRVLVERAKLLQHENEELESGIRTA-----------------RHMIRMTNKEKNTALHEAVCHQNVDV  139 (222)
Q Consensus        79 ~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~a~~~~~~~~  139 (222)
                      .|+  ..|+.+++++|+++|++++..+..+.+++..+                 +..++..+..|.||||+|+..|+.++
T Consensus       112 ~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~i  191 (480)
T PHA03100        112 YAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDV  191 (480)
T ss_pred             HHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHH
Confidence            999  99999999999999999877665544443322                 12234567789999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCC------CCHHHHHHHcCC--HHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHH
Q 027562          140 VEILTKEDPDYPYSANNDG------KTPLYMAADYRS--SDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL  211 (222)
Q Consensus       140 ~~~Ll~~~~~~~~~~~~~g------~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  211 (222)
                      +++|++.|++ ++..+..|      .||+|.|+..++  .+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus       192 v~~Ll~~ga~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll  270 (480)
T PHA03100        192 IKFLLDNGAD-INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL  270 (480)
T ss_pred             HHHHHHcCCC-ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999998 55667777      899999999999  99999999999999999999999999999999999999999


Q ss_pred             hcCCcccccc
Q 027562          212 SVGISILISF  221 (222)
Q Consensus       212 ~~ga~~~~~~  221 (222)
                      ++|||+++.+
T Consensus       271 ~~gad~n~~d  280 (480)
T PHA03100        271 DLGANPNLVN  280 (480)
T ss_pred             HcCCCCCccC
Confidence            9999998765

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=5e-36  Score=237.70  Aligned_cols=212  Identities=18%  Similarity=0.129  Sum_probs=128.6

Q ss_pred             ChHHHHHHHcC---CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc-ccccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAAAG---NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES-ENASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      .||||.|+..|   +.++++.|++.|++++..+..|.||||+  |+..+ ..+++++|++    .+..++..+..|.|||
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~--A~~~~~~~~iv~lLl~----~ga~in~~~~~g~tpL  121 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHL--YLYNATTLDVIKLLIK----AGADVNAKDKVGRTPL  121 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCcHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence            47788888877   7788888888888777777788888888  77777 4666666665    4556677777788888


Q ss_pred             HHHH--HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHH-----------------HHhhhccccCchHhHHHHhc--CC
Q 027562           78 HVAA--KFGHSDIVRVLVERAKLLQHENEELESGIRTAR-----------------HMIRMTNKEKNTALHEAVCH--QN  136 (222)
Q Consensus        78 ~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~a~~~--~~  136 (222)
                      |.|+  ..++.+++++|++.|++++..+..+.+++....                 ..+...+..|.||+|+++..  +.
T Consensus       122 h~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~  201 (471)
T PHA03095        122 HVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPR  201 (471)
T ss_pred             HHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCc
Confidence            8877  445677788888877777665554444443210                 01112344555666555532  44


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCH--HHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          137 VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS--DMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~--~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      .++++.|++.|++ ++..|..|+||||+|+..++.  .+++.|++.|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus       202 ~~i~~~Ll~~g~~-~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~g  280 (471)
T PHA03095        202 ARIVRELIRAGCD-PAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALG  280 (471)
T ss_pred             HHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5555555555555 444555555555555554442  3444555555555555555555555555555555555555555


Q ss_pred             Cccccc
Q 027562          215 ISILIS  220 (222)
Q Consensus       215 a~~~~~  220 (222)
                      ||+++.
T Consensus       281 ad~n~~  286 (471)
T PHA03095        281 ADINAV  286 (471)
T ss_pred             CCCccc
Confidence            555543

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.6e-35  Score=216.79  Aligned_cols=184  Identities=14%  Similarity=0.073  Sum_probs=163.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCC-hHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGE-TPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-t~L~~a   80 (222)
                      .||||.|+..|+.++++.|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|+ ||||.|
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~--Aa~~g~~eivk~Ll~----~gadin~~~~~g~~TpL~~A  135 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYY--AVDSGNMQTVKLFVK----KNWRLMFYGKTGWKTSFYHA  135 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH----CCCCcCccCCCCCcHHHHHH
Confidence            489999999999999999999999999899999999999  999999999999987    3556677777774 899999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK  159 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  159 (222)
                      +..|+.+++++|+++++..                    .+ ..|.||||+|+..|+.+++++|++.|++ ++..+..|.
T Consensus       136 a~~g~~eivk~LL~~~~~~--------------------~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd-~n~~d~~g~  194 (284)
T PHA02791        136 VMLNDVSIVSYFLSEIPST--------------------FDLAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLF  194 (284)
T ss_pred             HHcCCHHHHHHHHhcCCcc--------------------cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCcccCCCC
Confidence            9999999999999986432                    12 3589999999999999999999999998 668888898


Q ss_pred             CH-HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          160 TP-LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       160 t~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      || ||+|+..++.+++++|+++|++++.+|..+ +|+      ++.|++++||++.++---
T Consensus       195 t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~~~ll~~~~~~~~  248 (284)
T PHA02791        195 IPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIAKMIIEKHVEYKS  248 (284)
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHHHHHHHhhhhhcc
Confidence            76 999999999999999999999999999854 555      889999999999887543

>PHA02874 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.1e-35  Score=229.25  Aligned_cols=214  Identities=19%  Similarity=0.234  Sum_probs=183.8

Q ss_pred             CChHHHHHHHcCCchhHHHHHHHHHH-HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHH
Q 027562            1 MDPNLFKAAAAGNLEPFKDIAREVIK-RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHV   79 (222)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~   79 (222)
                      +...|..|+..|+++.++.|++.+.. .+..+..|.||||.  |+..|+.+++++|++    .+..++..+..|.||||.
T Consensus         1 ~~~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~--A~~~g~~~iv~~Ll~----~Ga~~n~~~~~~~t~L~~   74 (434)
T PHA02874          1 ASQDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLID--AIRSGDAKIVELFIK----HGADINHINTKIPHPLLT   74 (434)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHH--HHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHH
Confidence            35678999999999999999986543 45667789999999  999999999999987    456678889999999999


Q ss_pred             HHHhCCHHHHHHHHHhhhhhhhhhh-----HhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCC
Q 027562           80 AAKFGHSDIVRVLVERAKLLQHENE-----ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  154 (222)
Q Consensus        80 a~~~~~~~~~~~Ll~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  154 (222)
                      |+..|+.+++++|++.|++......     .....+......++..+..|.||||+|+..|+.+++++|++.|++ ++..
T Consensus        75 A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad-~n~~  153 (434)
T PHA02874         75 AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGAD-VNIE  153 (434)
T ss_pred             HHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCC-CCCc
Confidence            9999999999999999876543211     111112222334566788999999999999999999999999999 6688


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       155 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       154 d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~  220 (434)
T PHA02874        154 DDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKC  220 (434)
T ss_pred             CCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999987653

>PHA03095 ankyrin-like protein; Provisional

Probab=100.00  E-value=2.6e-35  Score=233.66  Aligned_cols=213  Identities=17%  Similarity=0.117  Sum_probs=184.4

Q ss_pred             ChHHHHHHHcC-CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAG-NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g-~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .||||.|+..| ..++++.|++.|.+++..+..|.||||+|++...++.+++++|++    .+..++..+..|.||||.|
T Consensus        84 ~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~----~gad~~~~d~~g~tpL~~a  159 (471)
T PHA03095         84 FTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLR----KGADVNALDLYGMTPLAVL  159 (471)
T ss_pred             CCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHH
Confidence            48999999999 599999999999999999999999999943336667788888877    4566788899999999999


Q ss_pred             HHhC--CHHHHHHHHHhhhhhhhhhhHhhhhhhhH-----------------HHHhhhccccCchHhHHHHhcCCh--HH
Q 027562           81 AKFG--HSDIVRVLVERAKLLQHENEELESGIRTA-----------------RHMIRMTNKEKNTALHEAVCHQNV--DV  139 (222)
Q Consensus        81 ~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~a~~~~~~--~~  139 (222)
                      +..+  ..+++++|++.|++++..+..+.+++...                 +..++..+..|.||||+|+..|..  .+
T Consensus       160 ~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~  239 (471)
T PHA03095        160 LKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSL  239 (471)
T ss_pred             HHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHH
Confidence            8876  67899999999998877655444444322                 223456789999999999998865  68


Q ss_pred             HHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       140 ~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      ++.|++.|.+ .+..|..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.++++.|+++|++++.
T Consensus       240 v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~  318 (471)
T PHA03095        240 VLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAET  318 (471)
T ss_pred             HHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHH
Confidence            8899999999 668899999999999999999999999999999999999999999999999999999999999999864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=100.00  E-value=1.3e-35  Score=227.39  Aligned_cols=193  Identities=24%  Similarity=0.251  Sum_probs=180.1

Q ss_pred             HHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccc-cCCChHHHHHH
Q 027562            4 NLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVN-AKGETPLHVAA   81 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~t~L~~a~   81 (222)
                      -++.|+++|+++.|+.+++. |.+++..|.+|.|+|||  |+.+++.++++++++    .+.++|..+ .-+.||||.|+
T Consensus        47 ~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHW--AAiNNrl~v~r~li~----~gadvn~~gG~l~stPLHWAa  120 (600)
T KOG0509|consen   47 DIVKATQYGELETVKELVESEGESVNNPDREGVTLLHW--AAINNRLDVARYLIS----HGADVNAIGGVLGSTPLHWAA  120 (600)
T ss_pred             hhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeH--HHHcCcHHHHHHHHH----cCCCccccCCCCCCCcchHHH
Confidence            46799999999999999998 88888999999999999  999999999999988    566778877 67999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ++|+..+++.|+++|++++.                  +|.+|.+|+|.|+..|+.-.+-+++..+.+ ++.+|..|+||
T Consensus       121 r~G~~~vv~lLlqhGAdpt~------------------~D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTp  181 (600)
T KOG0509|consen  121 RNGHISVVDLLLQHGADPTL------------------KDKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTP  181 (600)
T ss_pred             HcCcHHHHHHHHHcCCCCce------------------ecCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCH
Confidence            99999999999999999887                  899999999999999999999999999988 78999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCC-CCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEG-PNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ||+|+.++....+..|+..|+++...| ..|.||||+|+..|+..++++|++.|++.+.++
T Consensus       182 LmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~  242 (600)
T KOG0509|consen  182 LMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTN  242 (600)
T ss_pred             HHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccc
Confidence            999999999988999999999999988 899999999999999999998888888877654

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=9.3e-35  Score=239.06  Aligned_cols=217  Identities=16%  Similarity=0.132  Sum_probs=154.3

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHH------------------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEE------------------------   57 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~------------------------   57 (222)
                      .||||.|+..|+.++|++|++.|++++..+..|.||||+  |+..++.++++.+++                        
T Consensus       179 ~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~--A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~  256 (682)
T PHA02876        179 ITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLEC--AVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETS  256 (682)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHH--HHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHH
Confidence            489999999999999999999988877777777777777  666776666665542                        


Q ss_pred             -HHHhCCccccccccCCChHHHHHHHhCC-----------------------------------HHHHHHHHHhhhhhhh
Q 027562           58 -ILEKCPLLLLQVNAKGETPLHVAAKFGH-----------------------------------SDIVRVLVERAKLLQH  101 (222)
Q Consensus        58 -~~~~~~~~~~~~~~~~~t~L~~a~~~~~-----------------------------------~~~~~~Ll~~~~~~~~  101 (222)
                       ++...+..++..+..|.||||.|+..++                                   .++++.|+..|++++.
T Consensus       257 ~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~  336 (682)
T PHA02876        257 LLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA  336 (682)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC
Confidence             1112223334444445555555555444                                   4444444444444444


Q ss_pred             hhhHhhhhhhhH----------------HHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 027562          102 ENEELESGIRTA----------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA  165 (222)
Q Consensus       102 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  165 (222)
                      .+..+.+++..+                ...++.++..|.||||+|+..|+.+++++|++.|++ .+..+..|.||||+|
T Consensus       337 ~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A  415 (682)
T PHA02876        337 ADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFA  415 (682)
T ss_pred             cccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHH
Confidence            333333333222                122345677788888888888888888888888888 557777888888888


Q ss_pred             HHcCC-HHHHHHHHhcCCCCccCCCCCccHHHHHHHhc-cchhHHHHHhcCCcccccc
Q 027562          166 ADYRS-SDMVLALLENSTSASHEGPNGKTALHAAAMKS-YFGKFSYTLSVGISILISF  221 (222)
Q Consensus       166 ~~~~~-~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +..+. ..++++|+++|++++.+|..|+||||+|+..+ +.+++++|+++||++++.+
T Consensus       416 ~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d  473 (682)
T PHA02876        416 LCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN  473 (682)
T ss_pred             HHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCC
Confidence            76655 46688899999999999999999999999876 6799999999999998764

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=1.2e-34  Score=226.12  Aligned_cols=208  Identities=17%  Similarity=0.145  Sum_probs=168.1

Q ss_pred             hHHHHHHH--cCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            3 PNLFKAAA--AGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         3 ~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      ++||.++.  .++.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++.+|..|.||||+|
T Consensus        39 ~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~--Aa~~g~~eiv~lLL~----~GAdin~~d~~g~TpLh~A  112 (446)
T PHA02946         39 HILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHI--ASKINNNRIVAMLLT----HGADPNACDKQHKTPLYYL  112 (446)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHH--HHHcCCHHHHHHHHH----CcCCCCCCCCCCCCHHHHH
Confidence            57777654  345678999999999988888899999999  889999888888877    4566788889999999998


Q ss_pred             HHhCC--HHHHHHHHHhhhhhhh-hhhHhhhhhh--------------hHHHHhhhccccCchHhHHHHhcC--ChHHHH
Q 027562           81 AKFGH--SDIVRVLVERAKLLQH-ENEELESGIR--------------TARHMIRMTNKEKNTALHEAVCHQ--NVDVVE  141 (222)
Q Consensus        81 ~~~~~--~~~~~~Ll~~~~~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~~~l~~a~~~~--~~~~~~  141 (222)
                      +..++  .+++++|+++|++++. .+..+.+++.              .....++..|..|.||+|.|+..+  ..++++
T Consensus       113 ~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~  192 (446)
T PHA02946        113 SGTDDEVIERINLLVQYGAKINNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTIS  192 (446)
T ss_pred             HHcCCchHHHHHHHHHcCCCcccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHH
Confidence            87653  6889999999988774 2333333321              112334568899999999998754  468999


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHcC--CHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc-hhHHHHHhcCCccc
Q 027562          142 ILTKEDPDYPYSANNDGKTPLYMAADYR--SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF-GKFSYTLSVGISIL  218 (222)
Q Consensus       142 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~ga~~~  218 (222)
                      +|++.|++ ++..|..|+||||+|+..+  +.+++++|++ |++++.+|..|.||||+|+..++. +++++|+++|++++
T Consensus       193 ~Ll~~Gad-in~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        193 WMMKLGIS-PSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             HHHHcCCC-CcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCC
Confidence            99999999 6688999999999999876  7899999985 899999999999999999999884 89999999998653

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=1.4e-34  Score=226.61  Aligned_cols=197  Identities=25%  Similarity=0.252  Sum_probs=155.5

Q ss_pred             hHHHHHHHcCCchhHHHHHH-----HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhC-----------Cccc
Q 027562            3 PNLFKAAAAGNLEPFKDIAR-----EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKC-----------PLLL   66 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~-----~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~-----------~~~~   66 (222)
                      .|+|.|+.+|..++.+.+++     .+..++..+..|.+|||.  |+..|+++.++.+++...+.           ...+
T Consensus       189 ~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhl--Ave~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv  266 (929)
T KOG0510|consen  189 FPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHL--AVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELV  266 (929)
T ss_pred             chHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhh--hhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHh
Confidence            45666666666666666666     444455556666666666  66666666666665543321           1234


Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHh-
Q 027562           67 LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK-  145 (222)
Q Consensus        67 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-  145 (222)
                      +..|.+|.||||+|++.|++++++.|+..|++++.                  ++..+.+|+|.|+.+|+.+.++.|++ 
T Consensus       267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~------------------kn~d~~spLH~AA~yg~~ntv~rLL~~  328 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS------------------KNKDEESPLHFAAIYGRINTVERLLQE  328 (929)
T ss_pred             hcccccCCchHHHHHHcCChhHHHHHHHcCCcccc------------------cCCCCCCchHHHHHcccHHHHHHHHhC
Confidence            55677788888888888888888888888887766                  77889999999999999999999998 


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCc---cCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS---HEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      .+....+..|-.|+||||.|++.|+.++++.|++.|+...   ..|.+|.||||+|+..|+..+++.|+.+||++.+
T Consensus       329 ~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  329 SDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             cCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceee
Confidence            6666677888999999999999999999999999999877   5689999999999999999999999999999965

>PHA02946 ankyin-like protein; Provisional

Probab=100.00  E-value=8.1e-34  Score=221.43  Aligned_cols=206  Identities=16%  Similarity=0.178  Sum_probs=166.8

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      ++..++..++.+.++.+++...     ...+.++||.+++......++++.|++    .+..++.+|..|.||||+|++.
T Consensus        12 sl~~~~~~~n~~~~~~~l~~~~-----~~g~~~~Lh~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~G~TpLh~Aa~~   82 (446)
T PHA02946         12 SLYAKYNSKNLDVFRNMLQAIE-----PSGNYHILHAYCGIKGLDERFVEELLH----RGYSPNETDDDGNYPLHIASKI   82 (446)
T ss_pred             HHHHHHccCcHHHHHHHHhccC-----CCCCChHHHHHHHhcCCCHHHHHHHHH----CcCCCCccCCCCCCHHHHHHHc
Confidence            5678899999999999997521     224579999854455556677877776    5667889999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHH-----------H------hh-hccccCchHhHHHHhcCChHHHHHHHh
Q 027562           84 GHSDIVRVLVERAKLLQHENEELESGIRTARH-----------M------IR-MTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        84 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~-----------~------~~-~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      |+.+++++|+++|++++.++..+.+++..+..           +      ++ ..+..|.||+| |+..+..+++++|++
T Consensus        83 g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946         83 NNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            99999999999999999888777777654311           1      11 24678899997 666788999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCC--HHHHHHHHhcCCCCccCCCCCccHHHHHHHhc--cchhHHHHHhcCCcccccc
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRS--SDMVLALLENSTSASHEGPNGKTALHAAAMKS--YFGKFSYTLSVGISILISF  221 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .|.+ .+..|..|+||||.|+..++  .+++++|+++|++++.+|..|.||||+|+..+  +.+++++|++ |++++..+
T Consensus       162 ~gad-~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d  239 (446)
T PHA02946        162 IGFE-ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQN  239 (446)
T ss_pred             cccc-ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCC
Confidence            9988 66888999999999876544  68999999999999999999999999999876  7789998885 89998764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=9.4e-34  Score=228.47  Aligned_cols=207  Identities=19%  Similarity=0.132  Sum_probs=165.4

Q ss_pred             HcCCchhHHHHHHHH-HHHHhh-hhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCC--
Q 027562           10 AAGNLEPFKDIAREV-IKRLLT-AKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGH--   85 (222)
Q Consensus        10 ~~g~~~~v~~ll~~~-~~~~~~-~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~--   85 (222)
                      ..++.+++++|++.| ++++.. +..|.||||.|++...++.+++++|++    .+..++.+|..|.||||.|++.|+  
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe----~GADVN~kD~~G~TPLH~Aa~~g~~~  226 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCN----NGVNVNLQNNHLITPLHTYLITGNVC  226 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCCC
Confidence            468999999999999 888877 889999999944345567788888776    567789999999999999999995  


Q ss_pred             HHHHHHHHHhhhhhhhhhhHhhhhhhhHHH------------Hhhhcc--ccCch--HhH---HHHhcCChHHHHHHHhc
Q 027562           86 SDIVRVLVERAKLLQHENEELESGIRTARH------------MIRMTN--KEKNT--ALH---EAVCHQNVDVVEILTKE  146 (222)
Q Consensus        86 ~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~--~~~~~--~l~---~a~~~~~~~~~~~Ll~~  146 (222)
                      .++++.|+++|++++.++..+.+++..+-.            ++...+  ....+  +++   .|+..|+.+++++|++.
T Consensus       227 ~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~  306 (764)
T PHA02716        227 ASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQP  306 (764)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhC
Confidence            489999999999999866666665543210            000001  11111  222   35678999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHhcCCCCccCCCCCccHHHHHHH--------------hccchhHHHH
Q 027562          147 DPDYPYSANNDGKTPLYMAAD--YRSSDMVLALLENSTSASHEGPNGKTALHAAAM--------------KSYFGKFSYT  210 (222)
Q Consensus       147 ~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~L  210 (222)
                      |++ .+.+|..|+||||+|+.  .++.+++++|+++|++++.+|..|+||||+|+.              .++.+++++|
T Consensus       307 GAd-IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklL  385 (764)
T PHA02716        307 GVK-LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCL  385 (764)
T ss_pred             CCc-eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHH
Confidence            999 66889999999999764  467899999999999999999999999999875              3688999999


Q ss_pred             HhcCCcccccc
Q 027562          211 LSVGISILISF  221 (222)
Q Consensus       211 l~~ga~~~~~~  221 (222)
                      +++||+++..+
T Consensus       386 L~~GADIn~kn  396 (764)
T PHA02716        386 ISLGADITAVN  396 (764)
T ss_pred             HHCCCCCCCcC
Confidence            99999998764

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.9e-33  Score=223.17  Aligned_cols=195  Identities=18%  Similarity=0.111  Sum_probs=136.8

Q ss_pred             ChHHHHHHHc-----CCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc---ccccHHHHHHHHHhCCccccccccCC
Q 027562            2 DPNLFKAAAA-----GNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES---ENASTKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         2 ~~~l~~A~~~-----g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      .||||.|+..     +..++++.|++.|++++..+..|.||||+  |+..+   +.+++++|++    .+.+++..|..|
T Consensus        72 ~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~--a~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g  145 (489)
T PHA02798         72 STPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYC--LLSNGYINNLEILLFMIE----NGADTTLLDKDG  145 (489)
T ss_pred             CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHH--HHHcCCcChHHHHHHHHH----cCCCccccCCCC
Confidence            3566666543     45666666666666666666666666666  55543   3344444443    345566666666


Q ss_pred             ChHHHHHHHhCC---HHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhc----CChHHHHHHHhc
Q 027562           74 ETPLHVAAKFGH---SDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH----QNVDVVEILTKE  146 (222)
Q Consensus        74 ~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~  146 (222)
                      .||||+|++.++   .+++++|++.|++++..+                 +..|.||+|.++..    ++.+++++|++.
T Consensus       146 ~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~-----------------~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~  208 (489)
T PHA02798        146 FTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHN-----------------NKEKYDTLHCYFKYNIDRIDADILKLFVDN  208 (489)
T ss_pred             CcHHHHHHHcCCcchHHHHHHHHHhCCCccccc-----------------CcCCCcHHHHHHHhccccCCHHHHHHHHHC
Confidence            666666666665   666666666666655421                 23455566555432    345555555555


Q ss_pred             CCCC--------------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCC
Q 027562          147 DPDY--------------------------------------PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG  188 (222)
Q Consensus       147 ~~~~--------------------------------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  188 (222)
                      |+++                                      .+.+|..|+||||+|+..++.+++++|++.|++++.++
T Consensus       209 Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        209 GFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             CCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccC
Confidence            4321                                      34567789999999999999999999999999999999


Q ss_pred             CCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          189 PNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       189 ~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      ..|.|||+.|+..++.++++.|+++|+++++
T Consensus       289 ~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~~  319 (489)
T PHA02798        289 ELGNTCLFTAFENESKFIFNSILNKKPNKNT  319 (489)
T ss_pred             CCCCcHHHHHHHcCcHHHHHHHHccCCCHHH
Confidence            9999999999999999999999999999874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=100.00  E-value=3.4e-33  Score=218.95  Aligned_cols=210  Identities=20%  Similarity=0.204  Sum_probs=159.5

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHH-HHHhCCccccccccCCChHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEE-ILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      ||||.||..++.|..+.|++.|+++-..+..|++|+|.  |+++|..|+++..+. ........++..+..+.+|||.|+
T Consensus       156 TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~--aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAv  233 (929)
T KOG0510|consen  156 TPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHE--AARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAV  233 (929)
T ss_pred             chhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHH--HHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhh
Confidence            56666666666665566666666655555666666666  666666666666554 111223446666777778888888


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.++++.+++.|+.......+   .-...+.+++..|+.|.||||+|++.|.++.++.|+..|++ ++.++.++.||
T Consensus       234 e~g~~e~lk~~L~n~~~~a~~~~~---~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~sp  309 (929)
T KOG0510|consen  234 EGGDIEMLKMCLQNGKKIADVQLD---AMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESP  309 (929)
T ss_pred             hcCCHHHHHHHHhCccccchhhhH---HHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCc
Confidence            888888888887777655442211   12233456777899999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHh-cC-CCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          162 LYMAADYRSSDMVLALLE-NS-TSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~-~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      ||.|+.+|++++++.|++ .| ...+..|..|.||||.|++.|+..++++||..||...
T Consensus       310 LH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  310 LHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             hHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            999999999999999998 55 4567788899999999999999999999999999876

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=100.00  E-value=8.3e-33  Score=223.03  Aligned_cols=210  Identities=14%  Similarity=0.091  Sum_probs=163.2

Q ss_pred             ChHHHHHHH--cCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccccc--ccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAA--AGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESEN--ASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~--~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      .||||.|+.  +++.+++++|++.|.+++..+..|.||||+  |+..|+.  ++++.|++    .+..++.++..|.|||
T Consensus       178 ~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~--Aa~~g~~~~eIVklLLe----~GADVN~kD~~G~TPL  251 (764)
T PHA02716        178 YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHT--YLITGNVCASVIKKIIE----LGGDMDMKCVNGMSPI  251 (764)
T ss_pred             CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCCCHHHHHHHHH----cCCCCCCCCCCCCCHH
Confidence            489998865  467899999999999999999999999999  8888854  77888876    4677889999999999


Q ss_pred             HHHH---HhCCHHHHHHHHHhhhhhhhhh----------------hHhhhhhhhHHHHhhhccccCchHhHHHHh--cCC
Q 027562           78 HVAA---KFGHSDIVRVLVERAKLLQHEN----------------EELESGIRTARHMIRMTNKEKNTALHEAVC--HQN  136 (222)
Q Consensus        78 ~~a~---~~~~~~~~~~Ll~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~  136 (222)
                      |.|+   ..++.++++.+++.+......+                .+....+-..+..++.+|..|+||||+|+.  .++
T Consensus       252 h~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~  331 (764)
T PHA02716        252 MTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIS  331 (764)
T ss_pred             HHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCC
Confidence            9875   3456677777765432111100                001111111223345689999999999864  468


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH--------------cCCHHHHHHHHhcCCCCccCCCCCccHHHH----H
Q 027562          137 VDVVEILTKEDPDYPYSANNDGKTPLYMAAD--------------YRSSDMVLALLENSTSASHEGPNGKTALHA----A  198 (222)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~----a  198 (222)
                      .+++++|++.|++ .+.+|..|+||||+|+.              .++.+++++|+++|++++.++..|+||||.    |
T Consensus       332 ~eIVklLLe~GAD-IN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh~y~~~a  410 (764)
T PHA02716        332 TDIIKLLHEYGND-LNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLTSYICTA  410 (764)
T ss_pred             chHHHHHHHcCCC-CccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHHHHHHHH
Confidence            8999999999999 67889999999999875              367899999999999999999999999994    2


Q ss_pred             HHhccchhHHHHHhcCCccc
Q 027562          199 AMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       199 ~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      ...++.+++++|++.|+..+
T Consensus       411 ~n~~~~dIvklLis~~~~~~  430 (764)
T PHA02716        411 QNYMYYDIIDCLISDKVLNM  430 (764)
T ss_pred             HhcChHHHHHHHHhCcchhh
Confidence            34567899999999987644

>PHA02859 ankyrin repeat protein; Provisional

Probab=100.00  E-value=5.4e-32  Score=191.57  Aligned_cols=173  Identities=13%  Similarity=0.149  Sum_probs=143.9

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcc--cccccHHHHHHHHHhCCccccccc-cCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE--SENASTKFVEEILEKCPLLLLQVN-AKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~--~~~~~~~~l~~~~~~~~~~~~~~~-~~~~t~L~   78 (222)
                      .|||+.|+..|+.+.|+.|++.   .+..+..|.||||+  |+..  ++.+++++|++    .+..++.++ ..|.||||
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~--a~~~~~~~~eiv~~Ll~----~gadvn~~~~~~g~TpLh   92 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFS--CLEKDKVNVEILKFLIE----NGADVNFKTRDNNLSALH   92 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHH--HHHcCCCCHHHHHHHHH----CCCCCCccCCCCCCCHHH
Confidence            5799999999999999999875   34567889999999  6654  47788888877    456677776 47999999


Q ss_pred             HHHHh---CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHh--cCChHHHHHHHhcCCCCCCC
Q 027562           79 VAAKF---GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVC--HQNVDVVEILTKEDPDYPYS  153 (222)
Q Consensus        79 ~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~--~~~~~~~~~Ll~~~~~~~~~  153 (222)
                      .|+..   ++.+++++|+++|++++.                  .+..|.||+|.|+.  .++.+++++|++.|++ ++.
T Consensus        93 ~a~~~~~~~~~eiv~~Ll~~gadin~------------------~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad-in~  153 (209)
T PHA02859         93 HYLSFNKNVEPEILKILIDSGSSITE------------------EDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS-FLN  153 (209)
T ss_pred             HHHHhCccccHHHHHHHHHCCCCCCC------------------cCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC-ccc
Confidence            88754   468999999999988776                  78899999999875  4688999999999988 667


Q ss_pred             CCCCCCCHHHH-HHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc
Q 027562          154 ANNDGKTPLYM-AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS  202 (222)
Q Consensus       154 ~~~~g~t~l~~-a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  202 (222)
                      .|..|.||||. |+..++.+++++|+++|++++.++..|+|||++|...+
T Consensus       154 ~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        154 KDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             ccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            88999999995 56678899999999999999999999999999998654

>PHA02798 ankyrin-like protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=218.16  Aligned_cols=195  Identities=17%  Similarity=0.119  Sum_probs=163.8

Q ss_pred             hHHHHHH--HcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcc-----cccccHHHHHHHHHhCCccccccccCCCh
Q 027562            3 PNLFKAA--AAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE-----SENASTKFVEEILEKCPLLLLQVNAKGET   75 (222)
Q Consensus         3 ~~l~~A~--~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~t   75 (222)
                      |+++.+.  ..++.++|++|++.|++++..+..|.||||.  ++.+     +..+++++|++    .+.+++..+..|.|
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~--~~~n~~~~~~~~~iv~~Ll~----~GadiN~~d~~G~T  111 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCT--ILSNIKDYKHMLDIVKILIE----NGADINKKNSDGET  111 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHH--HHHhHHhHHhHHHHHHHHHH----CCCCCCCCCCCcCc
Confidence            4444333  3457899999999999999999999999999  5543     55667777766    57789999999999


Q ss_pred             HHHHHHHhC---CHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC---hHHHHHHHhcCCC
Q 027562           76 PLHVAAKFG---HSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN---VDVVEILTKEDPD  149 (222)
Q Consensus        76 ~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~---~~~~~~Ll~~~~~  149 (222)
                      |||.|+..+   +.+++++|+++|++++.                  .+..|.||+|+|+..+.   .+++++|++.|++
T Consensus       112 pLh~a~~~~~~~~~~iv~~Ll~~Gadvn~------------------~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad  173 (489)
T PHA02798        112 PLYCLLSNGYINNLEILLFMIENGADTTL------------------LDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD  173 (489)
T ss_pred             HHHHHHHcCCcChHHHHHHHHHcCCCccc------------------cCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC
Confidence            999999975   68999999999999877                  78999999999999887   9999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHc----CCHHHHHHHHhcCCCC---------------------------------------cc
Q 027562          150 YPYSANNDGKTPLYMAADY----RSSDMVLALLENSTSA---------------------------------------SH  186 (222)
Q Consensus       150 ~~~~~~~~g~t~l~~a~~~----~~~~~~~~Ll~~g~~~---------------------------------------~~  186 (222)
                      +....+..|.||+|.++..    ++.+++++|+++|+++                                       +.
T Consensus       174 in~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~  253 (489)
T PHA02798        174 INTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQ  253 (489)
T ss_pred             cccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCC
Confidence            4433356789999988764    4688888888887644                                       44


Q ss_pred             CCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          187 EGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       187 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +|..|+||||+|+..++.+++++|+++|||+++.+
T Consensus       254 ~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d  288 (489)
T PHA02798        254 VDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIIT  288 (489)
T ss_pred             cCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccC
Confidence            66789999999999999999999999999999865

>PHA02878 ankyrin repeat protein; Provisional

Probab=100.00  E-value=3e-32  Score=215.88  Aligned_cols=164  Identities=21%  Similarity=0.188  Sum_probs=142.3

Q ss_pred             HHHHHhhhhc-CCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhh
Q 027562           24 VIKRLLTAKT-KNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHE  102 (222)
Q Consensus        24 ~~~~~~~~~~-g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~  102 (222)
                      |++++..+.. |.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|++.|+.+++++|++.|++++. 
T Consensus       157 gadin~~~~~~g~tpLh~--A~~~~~~~iv~~Ll~----~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~-  229 (477)
T PHA02878        157 GADINMKDRHKGNTALHY--ATENKDQRLTELLLS----YGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA-  229 (477)
T ss_pred             CCCCCccCCCCCCCHHHH--HHhCCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-
Confidence            3334444555 9999999  999999999999987    4566788999999999999999999999999999998876 


Q ss_pred             hhHhhhhhhhHHHHhhhccccCchHhHHHHhc-CChHHHHHHHhcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhc
Q 027562          103 NEELESGIRTARHMIRMTNKEKNTALHEAVCH-QNVDVVEILTKEDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~  180 (222)
                                       ++..|.||||+|+.. ++.+++++|++.|++ .+..+. .|.||||.|  .++.+++++|+++
T Consensus       230 -----------------~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~  289 (477)
T PHA02878        230 -----------------RDKCGNTPLHISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEY  289 (477)
T ss_pred             -----------------CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHC
Confidence                             789999999999975 789999999999999 445554 799999999  5678999999999


Q ss_pred             CCCCccCCCCCccHHHHHHHhc-cchhHHHHHhcC
Q 027562          181 STSASHEGPNGKTALHAAAMKS-YFGKFSYTLSVG  214 (222)
Q Consensus       181 g~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~g  214 (222)
                      |++++..+..|.||||+|+..+ ..++.++|+.++
T Consensus       290 gadin~~d~~g~TpL~~A~~~~~~~~~~~~li~~~  324 (477)
T PHA02878        290 GADINSLNSYKLTPLSSAVKQYLCINIGRILISNI  324 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHHcCccchHHHHHHHH
Confidence            9999999999999999999754 567888887764

>PHA02989 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-32  Score=215.72  Aligned_cols=210  Identities=13%  Similarity=0.074  Sum_probs=146.1

Q ss_pred             ChHHHHHHHcC--CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc------ccccHHHHHHHHHhCCccccccccCC
Q 027562            2 DPNLFKAAAAG--NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES------ENASTKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         2 ~~~l~~A~~~g--~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      .|+|+.++..+  +.++|+.|++.|++++..+ .+.||||.  |+..+      ..++++.|++    .+.+++.++..|
T Consensus        36 ~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~--a~~~~~~~~~~~~~iv~~Ll~----~Gadin~~d~~g  108 (494)
T PHA02989         36 NSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCA--VLRNREITSNKIKKIVKLLLK----FGADINLKTFNG  108 (494)
T ss_pred             CCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHH--HHhccCcchhhHHHHHHHHHH----CCCCCCCCCCCC
Confidence            36776655543  5788999999888887665 56889988  65543      3345555554    566788888889


Q ss_pred             ChHHHHHHHh---CCHHHHHHHHHhhhhh-hhhhhHhhhhhhhHH-----------------HHhhh-ccccCchHhHHH
Q 027562           74 ETPLHVAAKF---GHSDIVRVLVERAKLL-QHENEELESGIRTAR-----------------HMIRM-TNKEKNTALHEA  131 (222)
Q Consensus        74 ~t~L~~a~~~---~~~~~~~~Ll~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~~-~~~~~~~~l~~a  131 (222)
                      .||||.|+..   ++.+++++|+++|+++ +.++..+.+++....                 ..++. .+..|.||+|.|
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a  188 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIY  188 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHH
Confidence            9999887655   5678899999998888 665555555544321                 01112 356788888887


Q ss_pred             Hhc----CChHHHHHHHhcCCCCC-------------------------------------CCCCCCCCCHHHHHHHcCC
Q 027562          132 VCH----QNVDVVEILTKEDPDYP-------------------------------------YSANNDGKTPLYMAADYRS  170 (222)
Q Consensus       132 ~~~----~~~~~~~~Ll~~~~~~~-------------------------------------~~~~~~g~t~l~~a~~~~~  170 (222)
                      +..    ++.+++++|++.|++..                                     +.+|..|+||||+|+..++
T Consensus       189 ~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~  268 (494)
T PHA02989        189 LRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDN  268 (494)
T ss_pred             HhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcC
Confidence            654    47788888888887632                                     1234457777777777777


Q ss_pred             HHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          171 SDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       171 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      .+++++|+++|++++.++..|.||||+|+..++.++++.|++++++..
T Consensus       269 ~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~~  316 (494)
T PHA02989        269 YEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGKY  316 (494)
T ss_pred             HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCChH
Confidence            777777777777777777777777777777777777777777776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=100.00  E-value=4.2e-32  Score=223.38  Aligned_cols=211  Identities=15%  Similarity=0.101  Sum_probs=162.2

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ++|+.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+.
T Consensus       147 ~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~--Aa~~G~~~iv~~LL~----~Gad~n~~~~~g~t~L~~A~~  220 (682)
T PHA02876        147 KLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHY--AAERGNAKMVNLLLS----YGADVNIIALDDLSVLECAVD  220 (682)
T ss_pred             HHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHCCCHHHHHHHHH----CCCCcCccCCCCCCHHHHHHH
Confidence            57889999999999999999999999999999999999  999999999999988    455677888999999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhh-----------------------------hhhHhhhhhhhH----------------HHHh
Q 027562           83 FGHSDIVRVLVERAKLLQH-----------------------------ENEELESGIRTA----------------RHMI  117 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~-----------------------------~~~~~~~~~~~~----------------~~~~  117 (222)
                      .++.+++++|++.+..++.                             .+..+.+++..+                ...+
T Consensus       221 ~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadi  300 (682)
T PHA02876        221 SKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADV  300 (682)
T ss_pred             cCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence            9999999888876544322                             221222222211                1123


Q ss_pred             hhccccCchHhHHHHhcC-ChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhcCCCCccCCCCCccHH
Q 027562          118 RMTNKEKNTALHEAVCHQ-NVDVVEILTKEDPDYPYSANNDGKTPLYMAADY-RSSDMVLALLENSTSASHEGPNGKTAL  195 (222)
Q Consensus       118 ~~~~~~~~~~l~~a~~~~-~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~g~~~~~~~~~g~t~l  195 (222)
                      +..+..|.||||+|+..| ..++++.|+..|++ .+..|..|.||||+|+.. +..+++++|++.|++++.++..|.|||
T Consensus       301 n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gad-in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpL  379 (682)
T PHA02876        301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGAD-VNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPI  379 (682)
T ss_pred             CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCC-CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHH
Confidence            345667777777777776 47777777777777 456677777777777664 456777778888888888888888888


Q ss_pred             HHHHHhccchhHHHHHhcCCccccc
Q 027562          196 HAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       196 ~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      |+|+..++.+++++|+++|++++..
T Consensus       380 h~Aa~~~~~~iv~~Ll~~gad~~~~  404 (682)
T PHA02876        380 HYAAVRNNVVIINTLLDYGADIEAL  404 (682)
T ss_pred             HHHHHcCCHHHHHHHHHCCCCcccc
Confidence            8888888888888888888887653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.98  E-value=8.5e-32  Score=213.98  Aligned_cols=178  Identities=17%  Similarity=0.187  Sum_probs=138.2

Q ss_pred             ChHHHHHHHc---CCchhHHHHHHHHHHH-HhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccc-cccCCChH
Q 027562            2 DPNLFKAAAA---GNLEPFKDIAREVIKR-LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ-VNAKGETP   76 (222)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~-~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~t~   76 (222)
                      .||||.|+..   |+.+++++|++.|+++ +..+..|.||||+|++...++.++++.|++.    +.+++. .+..|.||
T Consensus       109 ~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~----Gadi~~~~~~~g~tp  184 (494)
T PHA02989        109 VSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF----GVNLFEKTSLYGLTP  184 (494)
T ss_pred             CcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc----CCCccccccccCCCh
Confidence            3788877655   5778888888888888 6778888888888444445677778777763    344444 56778888


Q ss_pred             HHHHHHhC----CHHHHHHHHHhhhhhhhhhhHhhhhhhhH--------------------HHHhhhccccCchHhHHHH
Q 027562           77 LHVAAKFG----HSDIVRVLVERAKLLQHENEELESGIRTA--------------------RHMIRMTNKEKNTALHEAV  132 (222)
Q Consensus        77 L~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~a~  132 (222)
                      ||.|++.+    +.+++++|++.|++++..+....+++...                    ...++.+|..|.||||+|+
T Consensus       185 L~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa  264 (494)
T PHA02989        185 MNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA  264 (494)
T ss_pred             HHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence            88887654    78888888888888776654333332211                    1234678889999999999


Q ss_pred             hcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       133 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                      ..|+.+++++|++.|++ ++..|..|+||||+|+..++.++++.|++.++..
T Consensus       265 ~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        265 KVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK  315 (494)
T ss_pred             HhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence            99999999999999999 7788999999999999999999999999986543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.98  E-value=2.1e-32  Score=209.85  Aligned_cols=175  Identities=23%  Similarity=0.216  Sum_probs=161.9

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhh-hcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTA-KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      |+||+|+.+++++++++|+++|+++|... ..+.|||||  |+++|+..++..|++    .+.+++.+|.+|.+|+|+|+
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW--Aar~G~~~vv~lLlq----hGAdpt~~D~~G~~~lHla~  153 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW--AARNGHISVVDLLLQ----HGADPTLKDKQGLTPLHLAA  153 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH--HHHcCcHHHHHHHHH----cCCCCceecCCCCcHHHHHH
Confidence            68999999999999999999999999665 789999999  999999999999988    56678899999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ++|+.-.+-+++.++++++.                  +|..|+||||+|+.+|....+..|+..++.+....|..|+||
T Consensus       154 ~~~~~~~vayll~~~~d~d~------------------~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~Tp  215 (600)
T KOG0509|consen  154 QFGHTALVAYLLSKGADIDL------------------RDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTP  215 (600)
T ss_pred             HhCchHHHHHHHHhcccCCC------------------cCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCch
Confidence            99999999999999988776                  899999999999999998889999999998665666999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHh
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK  201 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  201 (222)
                      ||+|+..|+..++..|++.|++.+.+|.+|.||+.+|...
T Consensus       216 LHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  216 LHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            9999999999999977788899999999999999999766

>PHA02917 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.1e-31  Score=215.43  Aligned_cols=193  Identities=16%  Similarity=0.082  Sum_probs=158.5

Q ss_pred             ChHHHHHHHc---CCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAA---GNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      +||||.|+..   |+.+.++.|++.|.+++..+..|.||||+  |+..|+.++++.+.+.+.......+..+  ..++++
T Consensus        33 ~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~--Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~--~~~~~~  108 (661)
T PHA02917         33 NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEE--YTNSRHVKVNKDIAMALLEATGYSNIND--FNIFSY  108 (661)
T ss_pred             CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHH--HHHcCChhHHHHHHHHHHhccCCCCCCC--cchHHH
Confidence            5899997555   88999999999999999899999999999  9998987766555554432211123322  236778


Q ss_pred             HHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHH--hcCChHHHHHHHhcCCCCCCCCC-
Q 027562           79 VAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV--CHQNVDVVEILTKEDPDYPYSAN-  155 (222)
Q Consensus        79 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~--~~~~~~~~~~Ll~~~~~~~~~~~-  155 (222)
                      .|+..|+.+++++|+++|++++.                  +|..|+||||.++  ..|+.+++++|+++|+++ +..| 
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~------------------~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~  169 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSV------------------KCENHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDE  169 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCc------------------cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCc-ccccc
Confidence            89999999999999999999887                  7899999999654  578999999999999984 3333 


Q ss_pred             --CCC-----------CCHHHHHHH-----------cCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc--hhHHH
Q 027562          156 --NDG-----------KTPLYMAAD-----------YRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF--GKFSY  209 (222)
Q Consensus       156 --~~g-----------~t~l~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~--~~~~~  209 (222)
                        ..|           .||||+|+.           +++.+++++|+++|++++.++..|+||||+|+..|+.  +++++
T Consensus       170 ~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~  249 (661)
T PHA02917        170 DDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKL  249 (661)
T ss_pred             ccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHH
Confidence              233           599999986           4588999999999999999999999999999999986  79999


Q ss_pred             HHhcCCccc
Q 027562          210 TLSVGISIL  218 (222)
Q Consensus       210 Ll~~ga~~~  218 (222)
                      |++ |++++
T Consensus       250 Li~-g~d~~  257 (661)
T PHA02917        250 LMK-GIDNT  257 (661)
T ss_pred             HHh-CCccc
Confidence            975 98775

>PHA02795 ankyrin-like protein; Provisional

Probab=99.97  E-value=4.5e-31  Score=200.60  Aligned_cols=195  Identities=14%  Similarity=0.064  Sum_probs=166.9

Q ss_pred             HHHHcCCchhHHHHHHHHHHHH------hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            7 KAAAAGNLEPFKDIAREVIKRL------LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         7 ~A~~~g~~~~v~~ll~~~~~~~------~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      +|+..+..|+++.|+.+|.+++      .++..++|+||.+++...++.+++++|+..    +.+++..  .+.||+|.|
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~----GADIn~~--~~~t~lh~A  156 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDH----GAVIYKI--ECLNAYFRG  156 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHC----CCCCCCC--CCCCHHHHH
Confidence            7889999999999999999977      677889999999444448999999999884    5555553  458999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..++.+++++|+++|+.....   .         ..+..+..+.+++|.|...+..+++++|++.|++ .+..|..|.|
T Consensus       157 ~~~~~~eIVk~Lls~Ga~~~n~---~---------~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~T  223 (437)
T PHA02795        157 ICKKESSVVEFILNCGIPDEND---V---------KLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRT  223 (437)
T ss_pred             HHcCcHHHHHHHHhcCCccccc---c---------cchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCC
Confidence            9999999999999999743210   0         0111234577899999999999999999999999 6788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhcc--------chhHHHHHhcCCccccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY--------FGKFSYTLSVGISILIS  220 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~--------~~~~~~Ll~~ga~~~~~  220 (222)
                      |||+|+..++.+++++|+++|++++.++..|+||||+|+..|+        .+++++|+++|++++..
T Consensus       224 pLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~  291 (437)
T PHA02795        224 LLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCI  291 (437)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCch
Confidence            9999999999999999999999999999999999999999884        58999999999998753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=184.11  Aligned_cols=163  Identities=17%  Similarity=0.180  Sum_probs=144.3

Q ss_pred             hhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhC--CHHHHHHHHHhhhhhhhhhhHhhh
Q 027562           31 AKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFG--HSDIVRVLVERAKLLQHENEELES  108 (222)
Q Consensus        31 ~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~  108 (222)
                      .+.+.||||+  |+..|+.+.++.+++.       ++..+..|.||||+|+..+  +.+++++|+++|++++.       
T Consensus        18 ~~~~~~pL~~--A~~~~~~~~vk~Li~~-------~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~-------   81 (209)
T PHA02859         18 FYRYCNPLFY--YVEKDDIEGVKKWIKF-------VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF-------   81 (209)
T ss_pred             hhccCcHHHH--HHHhCcHHHHHHHHHh-------hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc-------
Confidence            4578999999  9999999999998763       3557889999999999864  88999999999999876       


Q ss_pred             hhhhHHHHhhhcc-ccCchHhHHHHhc---CChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHhcCC
Q 027562          109 GIRTARHMIRMTN-KEKNTALHEAVCH---QNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD--YRSSDMVLALLENST  182 (222)
Q Consensus       109 ~~~~~~~~~~~~~-~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g~  182 (222)
                                 .+ ..|.||||+|+..   ++.+++++|++.|++ ++..|..|.||||.|+.  .++.+++++|+++|+
T Consensus        82 -----------~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~ga  149 (209)
T PHA02859         82 -----------KTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS-ITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGV  149 (209)
T ss_pred             -----------cCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCC
Confidence                       54 5799999998753   479999999999999 67889999999999876  468999999999999


Q ss_pred             CCccCCCCCccHHHH-HHHhccchhHHHHHhcCCcccccc
Q 027562          183 SASHEGPNGKTALHA-AAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       183 ~~~~~~~~g~t~l~~-a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +++.+|..|.||||. ++..++.+++++|+++|++++.++
T Consensus       150 din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d  189 (209)
T PHA02859        150 SFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETN  189 (209)
T ss_pred             CcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Confidence            999999999999995 567889999999999999999764

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=1.8e-31  Score=198.13  Aligned_cols=195  Identities=23%  Similarity=0.304  Sum_probs=168.6

Q ss_pred             HHHHcCCchhHHHHHHHHH-----HHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCcc-----ccccccCCChH
Q 027562            7 KAAAAGNLEPFKDIAREVI-----KRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLL-----LLQVNAKGETP   76 (222)
Q Consensus         7 ~A~~~g~~~~v~~ll~~~~-----~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~t~   76 (222)
                      .|+..|.+..++.|+-...     +....+..|.|||-+  |+++|+.++++++++.....+..     .+-....|-.|
T Consensus        10 naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~i--aaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~Iegapp   87 (615)
T KOG0508|consen   10 NAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLI--AARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPP   87 (615)
T ss_pred             HHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceee--ehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCch
Confidence            7888898888888877422     222456688999999  99999999999999865443222     22223467889


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC
Q 027562           77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  156 (222)
Q Consensus        77 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (222)
                      |..|+-.|+.++++.|+++|+++|.                  ......|||.-||..|+.+++++|+++|++ ++..|+
T Consensus        88 LWaAsaAGHl~vVk~L~~~ga~VN~------------------tT~TNStPLraACfDG~leivKyLvE~gad-~~Ianr  148 (615)
T KOG0508|consen   88 LWAASAAGHLEVVKLLLRRGASVND------------------TTRTNSTPLRAACFDGHLEIVKYLVEHGAD-PEIANR  148 (615)
T ss_pred             hhHHhccCcHHHHHHHHHhcCcccc------------------ccccCCccHHHHHhcchhHHHHHHHHcCCC-Cccccc
Confidence            9999999999999999999998887                  677888999999999999999999999999 779999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccccC
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      .|+|.||+|+.+|+.+++++|++.|++++.++..|.|+||.|+..|+.+++++|+.+|+-+++.-|
T Consensus       149 hGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~~  214 (615)
T KOG0508|consen  149 HGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDGH  214 (615)
T ss_pred             CCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeeecCC
Confidence            999999999999999999999999999999999999999999999999999999999998887643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.97  E-value=6e-31  Score=195.44  Aligned_cols=184  Identities=23%  Similarity=0.219  Sum_probs=165.9

Q ss_pred             hHHHHHHHcCCchhHHHHHHH-HHHHH--------hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCC
Q 027562            3 PNLFKAAAAGNLEPFKDIARE-VIKRL--------LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~-~~~~~--------~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      |||..|+++|+.+.|++|+++ +.++.        -..-+|-+||+.  |+..|+.++++.|++.    +..+|......
T Consensus        44 tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWa--AsaAGHl~vVk~L~~~----ga~VN~tT~TN  117 (615)
T KOG0508|consen   44 TPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWA--ASAAGHLEVVKLLLRR----GASVNDTTRTN  117 (615)
T ss_pred             CceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhH--HhccCcHHHHHHHHHh----cCccccccccC
Confidence            789999999999999999994 33332        223467788887  8999999999999884    36688888888


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCC
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS  153 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  153 (222)
                      .|||..||.-|+.+++++|+++|++++.                  .++.|.|-||.||..|+.+++++|++.|++ .+.
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~I------------------anrhGhTcLmIa~ykGh~~I~qyLle~gAD-vn~  178 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEI------------------ANRHGHTCLMIACYKGHVDIAQYLLEQGAD-VNA  178 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcc------------------cccCCCeeEEeeeccCchHHHHHHHHhCCC-cch
Confidence            8999999999999999999999999887                  899999999999999999999999999999 779


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHh
Q 027562          154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       154 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                      ++..|+|+||.|+..|+.+++++|+.+|+.++... .|.|||..|...|+.+++++|++
T Consensus       179 ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  179 KSYKGNTALHDCAESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             hcccCchHHHhhhhcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHhc
Confidence            99999999999999999999999999999988755 59999999999999999999995

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=3.1e-30  Score=212.52  Aligned_cols=208  Identities=26%  Similarity=0.264  Sum_probs=157.8

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc-ccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES-ENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      ||||.|+.+++.++++.+++.+.+++..+..|.||+|+  |+..| ..+....+.+    .+..++.....|.||||+|.
T Consensus       409 Tplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhv--aa~~g~~~~~~~~l~~----~g~~~n~~s~~G~T~Lhlaa  482 (1143)
T KOG4177|consen  409 TPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHV--AAKKGRYLQIARLLLQ----YGADPNAVSKQGFTPLHLAA  482 (1143)
T ss_pred             ceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhh--hhhcccHhhhhhhHhh----cCCCcchhccccCcchhhhh
Confidence            45666666666666666666666666666666666666  65555 4344333333    34556777778888888888


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ..|+.++++.+++.++..+.....+-..+...               +...+.++..+.||||.|+..|++++|++|+++
T Consensus       483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~  562 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH  562 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC
Confidence            88888888888877755555443332222222               222445778889999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          147 DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       147 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      |++ .+.+++.|+||||.|+..|+.+|++.|+++|+++|..+.+|.|||+.|+..|+++++++|+..|+.+
T Consensus       563 gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  563 GAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             Ccc-ccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCcc
Confidence            999 6688899999999999999999999999999999999999999999999999999999999999984

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.96  E-value=2.9e-30  Score=212.67  Aligned_cols=214  Identities=24%  Similarity=0.195  Sum_probs=173.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||+|.|+.+|..+.++.+++.|.+++...+.|.||||.  ++..++..+++.+++    .+...+..+..|+||+|+|+
T Consensus       375 ~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~--aa~~~~~~~v~l~l~----~gA~~~~~~~lG~T~lhvaa  448 (1143)
T KOG4177|consen  375 FTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHV--AAHYGNPRVVKLLLK----RGASPNAKAKLGYTPLHVAA  448 (1143)
T ss_pred             CcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeee--hhhccCcceEEEEec----cCCChhhHhhcCCChhhhhh
Confidence            468888888888888888888888888888888888888  888888888888777    34556777888889999988


Q ss_pred             HhC-CHHHHHHHHHhhhhhhhhhhHhhhhhhhHH---------------HHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           82 KFG-HSDIVRVLVERAKLLQHENEELESGIRTAR---------------HMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        82 ~~~-~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      ..| ..++...+++.|.+++.....+.+++...-               ...+.....+.+++|.+...+...+++.+++
T Consensus       449 ~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~  528 (1143)
T KOG4177|consen  449 KKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLE  528 (1143)
T ss_pred             hcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhh
Confidence            888 778888888888888775555444433221               1122333556667777777777777777777


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccccC
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      +|.. .+.++..+.||||.|+.+|+.++|++|+++|++++.+++.|+||||.|+..|+.+++.+|+++||+||..+.
T Consensus       529 ~ga~-v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~  604 (1143)
T KOG4177|consen  529 HGAN-VDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL  604 (1143)
T ss_pred             cCCc-eehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence            7766 557788899999999999999999999999999999999999999999999999999999999999998763

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=9.2e-29  Score=206.47  Aligned_cols=171  Identities=19%  Similarity=0.222  Sum_probs=114.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .++|+.||..|+.++++.|++.|.+++..|..|.||||+  |+..|+.++++.|++    .+.+++..|..|.||||.|+
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~--Aa~~g~~~~v~~Ll~----~gadin~~d~~G~TpL~~A~  599 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHI--AASKGYEDCVLVLLK----HACNVHIRDANGNTALWNAI  599 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcChHHHHHHHHh----cCCCCCCcCCCCCCHHHHHH
Confidence            356677777777777777777777666666677777777  666777666666655    34456666667777777777


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.++..+                    ...+.++||.|+..|+.++++.|++.|++ ++..|..|+||
T Consensus       600 ~~g~~~iv~~L~~~~~~~~--------------------~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~Tp  658 (823)
T PLN03192        600 SAKHHKIFRILYHFASISD--------------------PHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATA  658 (823)
T ss_pred             HhCCHHHHHHHHhcCcccC--------------------cccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCH
Confidence            7777777777766544322                    23355667777777777777777777776 45666677777


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCC-ccHHHHHH
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNG-KTALHAAA  199 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g-~t~l~~a~  199 (222)
                      ||.|+..++.+++++|+++|++++..+..| .||...+.
T Consensus       659 Lh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~  697 (823)
T PLN03192        659 LQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRE  697 (823)
T ss_pred             HHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH
Confidence            777777777777777777777777666666 66666554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.96  E-value=1.3e-28  Score=205.57  Aligned_cols=163  Identities=22%  Similarity=0.191  Sum_probs=148.1

Q ss_pred             hcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhh
Q 027562           32 KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIR  111 (222)
Q Consensus        32 ~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  111 (222)
                      ..+.++|+.  |+..|+.+.++.+++    .+.+++..|..|.||||+|+..|+.++++.|+++|++++.          
T Consensus       523 ~~~~~~L~~--Aa~~g~~~~l~~Ll~----~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~----------  586 (823)
T PLN03192        523 PNMASNLLT--VASTGNAALLEELLK----AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI----------  586 (823)
T ss_pred             ccchhHHHH--HHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC----------
Confidence            356788999  889999888888776    5667889999999999999999999999999999998776          


Q ss_pred             hHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCC
Q 027562          112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG  191 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  191 (222)
                              .|..|.||||.|+..|+.+++++|++.+.. .  ....+.++||.|+..++.++++.|+++|++++.+|..|
T Consensus       587 --------~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~-~--~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G  655 (823)
T PLN03192        587 --------RDANGNTALWNAISAKHHKIFRILYHFASI-S--DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG  655 (823)
T ss_pred             --------cCCCCCCHHHHHHHhCCHHHHHHHHhcCcc-c--CcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC
Confidence                    789999999999999999999999987765 2  33457799999999999999999999999999999999


Q ss_pred             ccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          192 KTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .||||+|+..|+.+++++|+++|||++..+
T Consensus       656 ~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        656 ATALQVAMAEDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence            999999999999999999999999998754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=196.11  Aligned_cols=194  Identities=14%  Similarity=0.117  Sum_probs=145.7

Q ss_pred             HHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHH----------------------HHHh-----
Q 027562            9 AAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEE----------------------ILEK-----   61 (222)
Q Consensus         9 ~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~----------------------~~~~-----   61 (222)
                      ..++..|+++.|++.|++++.+|..|.||||++.++..++.|++++|++                      ++..     
T Consensus       210 ~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (672)
T PHA02730        210 SESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVT  289 (672)
T ss_pred             hhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcc
Confidence            4667899999999999999999999999999655777888999999998                      0100     


Q ss_pred             -CCccccc--------------------cccCCCh---------------------HHHHHHHhC---CHHHHHHHHHhh
Q 027562           62 -CPLLLLQ--------------------VNAKGET---------------------PLHVAAKFG---HSDIVRVLVERA   96 (222)
Q Consensus        62 -~~~~~~~--------------------~~~~~~t---------------------~L~~a~~~~---~~~~~~~Ll~~~   96 (222)
                       .+.++..                    .+..|.+                     .||.-..++   +.+++++|+++|
T Consensus       290 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G  369 (672)
T PHA02730        290 PYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG  369 (672)
T ss_pred             cCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC
Confidence             1222222                    4555654                     566666655   589999999999


Q ss_pred             hhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC----hHHHHHHHhcCCC-CCCCCCCCCCCHHHH---HHHc
Q 027562           97 KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN----VDVVEILTKEDPD-YPYSANNDGKTPLYM---AADY  168 (222)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~---a~~~  168 (222)
                      ++++.                  . ..|.||||+|+..+.    .+++++|+++|++ ..+..|..|.||||.   |...
T Consensus       370 AdIN~------------------k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~  430 (672)
T PHA02730        370 ATMDK------------------T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFN  430 (672)
T ss_pred             CCCCc------------------C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhc
Confidence            99875                  3 577888888777664    7888888888763 255667788888873   2222


Q ss_pred             C---------CHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          169 R---------SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       169 ~---------~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +         ..+++++|+++|++++.+|..|+||||+|+..++.+++++|+++||+++..+
T Consensus       431 n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        431 NCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             cccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            1         1246788888888888888888888888888888888888888888887764

>PHA02730 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=195.18  Aligned_cols=193  Identities=11%  Similarity=0.041  Sum_probs=151.0

Q ss_pred             ChHHHHHHHcC---CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc--ccccHHHHHHHHHhCCccccccccCCChH
Q 027562            2 DPNLFKAAAAG---NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES--ENASTKFVEEILEKCPLLLLQVNAKGETP   76 (222)
Q Consensus         2 ~~~l~~A~~~g---~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~t~   76 (222)
                      +||||+|+..|   +.++|+.|++.|++++.+|..|+||||+  |+..+  +.|++++|++...  +...+..+..+.+|
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~--Aa~~~~~~~eIv~~Ll~~~~--~~~~~~~~~~~d~~  117 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGV--YSKRKYVKSQIVHLLISSYS--NASNELTSNINDFD  117 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHH--HHHcCCCcHHHHHHHHhcCC--CCCcccccccCCch
Confidence            48999999997   4899999999999999999999999999  76655  7889988887422  23345566678899


Q ss_pred             HHHHHH--hCCHHHHHHHHH-hhhhhhhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCC-
Q 027562           77 LHVAAK--FGHSDIVRVLVE-RAKLLQHENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYP-  151 (222)
Q Consensus        77 L~~a~~--~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~-  151 (222)
                      |+.++.  .++.+++++|++ .+.+++...              +..+ ..|.+|++.+...+..+++++|++.|++.. 
T Consensus       118 l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~--------------~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g  183 (672)
T PHA02730        118 LYSYMSSDNIDLRLLKYLIVDKRIRPSKNT--------------NYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTG  183 (672)
T ss_pred             HHHHHHhcCCcHHHHHHHHHhcCCChhhhh--------------hhhccccchhhhhHhcCCCchHHHHHHHHcCCcccc
Confidence            998887  788999999996 445554310              0011 378999999999999999999999999842 


Q ss_pred             -----CCCCCCC-CCHHHHH------HHcCCHHHHHHHHhcCCCCccCCCCCccHHHH--HHHhccchhHHHHHh
Q 027562          152 -----YSANNDG-KTPLYMA------ADYRSSDMVLALLENSTSASHEGPNGKTALHA--AAMKSYFGKFSYTLS  212 (222)
Q Consensus       152 -----~~~~~~g-~t~l~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~--a~~~~~~~~~~~Ll~  212 (222)
                           ...+... .|.||++      ...++.+++++|+++|++++.+|..|+||||+  +...++.|++++|++
T Consensus       184 ~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        184 YVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             cccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence                 1123333 3555533      34567899999999999999999999999995  455667999999999

>PHA02792 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=188.63  Aligned_cols=212  Identities=11%  Similarity=0.045  Sum_probs=155.7

Q ss_pred             HHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhc-ccccccHHHHHHHHHhCC----------------------
Q 027562            7 KAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSK-ESENASTKFVEEILEKCP----------------------   63 (222)
Q Consensus         7 ~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~-~~~~~~~~~l~~~~~~~~----------------------   63 (222)
                      .|...|++|+|++|+.+|+|++.++..|.+|+|+  |+. .++.|++++|++.+....                      
T Consensus        78 ~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~y--a~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~  155 (631)
T PHA02792         78 LCSDNIDIELLKLLISKGLEINSIKNGINIVEKY--ATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNW  155 (631)
T ss_pred             HHHhcccHHHHHHHHHcCCCcccccCCCCcceeE--eecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccch
Confidence            4566778888888888888888777777888888  644 588888888877653200                      


Q ss_pred             ----------ccccccccCCChHHHHHHHhC-------CHHHHHHHHHhhhhhhhhhhHhhhhhhhH-------------
Q 027562           64 ----------LLLLQVNAKGETPLHVAAKFG-------HSDIVRVLVERAKLLQHENEELESGIRTA-------------  113 (222)
Q Consensus        64 ----------~~~~~~~~~~~t~L~~a~~~~-------~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~-------------  113 (222)
                                ..++..|..|.||||+|+..+       +.++++.|+++|++++..+..+.+++...             
T Consensus       156 ~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~  235 (631)
T PHA02792        156 DDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDA  235 (631)
T ss_pred             hhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHH
Confidence                      022345566888888888887       67888888888777655443222222111             


Q ss_pred             -----------------------------------------------------------------------HHH------
Q 027562          114 -----------------------------------------------------------------------RHM------  116 (222)
Q Consensus       114 -----------------------------------------------------------------------~~~------  116 (222)
                                                                                             .+.      
T Consensus       236 L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~  315 (631)
T PHA02792        236 LFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVS  315 (631)
T ss_pred             HHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHh
Confidence                                                                                   000      


Q ss_pred             ------------hh-hc---cccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCC--CCHHHHHHHcCCH---HHHH
Q 027562          117 ------------IR-MT---NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDG--KTPLYMAADYRSS---DMVL  175 (222)
Q Consensus       117 ------------~~-~~---~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~  175 (222)
                                  ++ ..   .......++.|+..|+.+++++|+++|++ .+..|..|  .||||.|......   ++++
T Consensus       316 ~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~Ilk  394 (631)
T PHA02792        316 YHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILK  394 (631)
T ss_pred             cCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHH
Confidence                        00 00   11234457888999999999999999999 55666664  6999998776654   4688


Q ss_pred             HHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          176 ALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       176 ~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +|+++|++++.+|..|+||||+|+..++.+++++|+++||+++..+
T Consensus       395 lLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD  440 (631)
T PHA02792        395 LCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITT  440 (631)
T ss_pred             HHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            8999999999999999999999999999999999999999999765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.5e-27  Score=191.85  Aligned_cols=181  Identities=18%  Similarity=0.124  Sum_probs=146.5

Q ss_pred             chhHHHHHHHHHHHHhhhhcCCCchhHHhhhcc---cccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHH---
Q 027562           14 LEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE---SENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSD---   87 (222)
Q Consensus        14 ~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~---   87 (222)
                      ++.|+.|+..+...+..|..|.||||+  |+..   |+.++++.|++    .+..++..+..|.||||.|+..|+.+   
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g~t~Lh~--a~~~~~~~~~~~v~~Ll~----~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~   85 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFKNNALHA--YLFNEHCNNVEVVKLLLD----SGTNPLHKNWRQLTPLEEYTNSRHVKVNK   85 (661)
T ss_pred             HHHHHHHHhccCcccccCCCCCcHHHH--HHHhhhcCcHHHHHHHHH----CCCCccccCCCCCCHHHHHHHcCChhHHH
Confidence            567889998777777779999999999  6444   77899988877    45667888999999999999999854   


Q ss_pred             -HHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 027562           88 -IVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA  166 (222)
Q Consensus        88 -~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  166 (222)
                       +++.|++.+...+.                  .+  ..++++.|+.+++.+++++|++.|++ ++..|..|+||||.++
T Consensus        86 ~~~~~Ll~~~~~~n~------------------~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad-in~~d~~g~T~L~~~~  144 (661)
T PHA02917         86 DIAMALLEATGYSNI------------------ND--FNIFSYMKSKNVDVDLIKVLVEHGFD-LSVKCENHRSVIENYV  144 (661)
T ss_pred             HHHHHHHhccCCCCC------------------CC--cchHHHHHhhcCCHHHHHHHHHcCCC-CCccCCCCccHHHHHH
Confidence             45667665332222                  11  23567889999999999999999999 6788999999999654


Q ss_pred             --HcCCHHHHHHHHhcCCCCccCCC---CC-----------ccHHHHHHH-----------hccchhHHHHHhcCCcccc
Q 027562          167 --DYRSSDMVLALLENSTSASHEGP---NG-----------KTALHAAAM-----------KSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       167 --~~~~~~~~~~Ll~~g~~~~~~~~---~g-----------~t~l~~a~~-----------~~~~~~~~~Ll~~ga~~~~  219 (222)
                        ..++.+++++|+++|++++..+.   .|           .||||+|+.           .++.+++++|+++|||+|.
T Consensus       145 a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~  224 (661)
T PHA02917        145 MTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS  224 (661)
T ss_pred             HccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc
Confidence              57899999999999999986543   23           599999986           4588999999999999998


Q ss_pred             cc
Q 027562          220 SF  221 (222)
Q Consensus       220 ~~  221 (222)
                      .+
T Consensus       225 ~d  226 (661)
T PHA02917        225 ID  226 (661)
T ss_pred             CC
Confidence            64

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=5e-27  Score=178.64  Aligned_cols=174  Identities=11%  Similarity=0.059  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCcccc------ccccCCChHHHHHHH--hCCHHH
Q 027562           17 FKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLL------QVNAKGETPLHVAAK--FGHSDI   88 (222)
Q Consensus        17 v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~~t~L~~a~~--~~~~~~   88 (222)
                      .++++.+|.+.+....+|     +  |+..+..|++++|+..    +..++      ..+..++|+||.++.  .|+.++
T Consensus        65 ~~~~~~~~~~i~~~~~~~-----~--~~~~~~k~~~~~l~s~----~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~ei  133 (437)
T PHA02795         65 YDYFRIHRDNIDQYIVDR-----L--FAYITYKDIISALVSK----NYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDI  133 (437)
T ss_pred             HHHHHHcCcchhhhhhhh-----H--HhhcchHHHHHHHHhc----ccccchhhhhhhccccccHHHHHHHHhcCCCHHH
Confidence            456777788877666666     6  8888888888888874    33444      567789999999999  899999


Q ss_pred             HHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC-----CCCCCHHH
Q 027562           89 VRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN-----NDGKTPLY  163 (222)
Q Consensus        89 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----~~g~t~l~  163 (222)
                      +++|+++|++++.                    ..+.||+|.|+..++.+++++|+++|++..+..+     ..+.+++|
T Consensus       134 V~~LI~~GADIn~--------------------~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~  193 (437)
T PHA02795        134 VDFMVDHGAVIYK--------------------IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGF  193 (437)
T ss_pred             HHHHHHCCCCCCC--------------------CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhH
Confidence            9999999999764                    2457899999999999999999999975333321     34778999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       164 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .|...+..+++++|+++|++++.++..|.||||+|+..|+.+++++|+++||+++.++
T Consensus       194 ~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d  251 (437)
T PHA02795        194 LVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVM  251 (437)
T ss_pred             HHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999875

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.94  E-value=8.4e-28  Score=162.40  Aligned_cols=190  Identities=19%  Similarity=0.139  Sum_probs=159.5

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      +++.++-+|..+.+...+..+...+..+-.+++|+.+  ++..-+.+.+      .......+|..|+.|.|||..|+..
T Consensus        99 ~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~sl--sVhql~L~~~------~~~~~n~VN~~De~GfTpLiWAaa~  170 (296)
T KOG0502|consen   99 ALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSL--SVHQLHLDVV------DLLVNNKVNACDEFGFTPLIWAAAK  170 (296)
T ss_pred             hhhhcCCCCCcceeeeeecccccCCccccccCChhhH--HHHHHHHHHH------HHHhhccccCccccCchHhHHHHhc
Confidence            4667777777777777777777776677778888888  5544432222      2223456788999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 027562           84 GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY  163 (222)
Q Consensus        84 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  163 (222)
                      |++.++++|++.|++++.                  ..++..++|..|++.|..++|+.|+..+++ .+..|.+|-|||-
T Consensus       171 G~i~vV~fLL~~GAdp~~------------------lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLl  231 (296)
T KOG0502|consen  171 GHIPVVQFLLNSGADPDA------------------LGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLL  231 (296)
T ss_pred             CchHHHHHHHHcCCChhh------------------hhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceee
Confidence            999999999999999877                  678889999999999999999999999999 7789999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       164 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +|+..++.+|++.|++.|++++..+..|++++..|+..|+. +++..+++-+.++.++
T Consensus       232 yAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  232 YAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             eeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999987 7888887777665543

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=5.5e-26  Score=155.31  Aligned_cols=137  Identities=13%  Similarity=0.120  Sum_probs=104.4

Q ss_pred             cccccccCCChHHHHHHHhCCH----HHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHH-
Q 027562           65 LLLQVNAKGETPLHVAAKFGHS----DIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV-  139 (222)
Q Consensus        65 ~~~~~~~~~~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~-  139 (222)
                      .++..+..+.++||.|++.|+.    +++++|.+.|..++.                  .|..|+||||+|+..|..+. 
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~------------------~d~~g~t~Lh~Aa~~g~~~~~   73 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR------------------YDHHGRQCTHMVAWYDRANAV   73 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc------------------cCCCCCcHHHHHHHhCccCHH
Confidence            3444566777888888888877    455566666665544                  67788888888888776543 


Q ss_pred             --HHHHHhcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          140 --VEILTKEDPDYPYSAN-NDGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       140 --~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                        +++|++.|++ ++..+ ..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|+
T Consensus        74 ~~i~~Ll~~Gad-in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga  152 (166)
T PHA02743         74 MKIELLVNMGAD-INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGA  152 (166)
T ss_pred             HHHHHHHHcCCC-CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence              7788888887 45666 478888888888888888888884 788888888888888888888888888888888888


Q ss_pred             ccccc
Q 027562          216 SILIS  220 (222)
Q Consensus       216 ~~~~~  220 (222)
                      +++-+
T Consensus       153 ~~~~~  157 (166)
T PHA02743        153 VCDDP  157 (166)
T ss_pred             CCCCc
Confidence            87754

>PHA02792 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-25  Score=176.67  Aligned_cols=197  Identities=12%  Similarity=0.095  Sum_probs=146.6

Q ss_pred             ChHHHHHHHcC-------CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhccc--ccccHHHHHHHH-------------
Q 027562            2 DPNLFKAAAAG-------NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKES--ENASTKFVEEIL-------------   59 (222)
Q Consensus         2 ~~~l~~A~~~g-------~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~--~~~~~~~l~~~~-------------   59 (222)
                      .||||+|+..+       +.|+++.|+.+|++.+..|..|.||||+  ++.+.  ..|+++.|+.-.             
T Consensus       176 ~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~--~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y  253 (631)
T PHA02792        176 KTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYY--YVDKCDIKREIFDALFDSNYSGNELMNILSNY  253 (631)
T ss_pred             CchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHH--HHHcccchHHHHHHHHhccccccchHhHHHHH
Confidence            58999999999       8999999999999999889999999999  77777  677777774421             


Q ss_pred             -HhCC----cccc--cccc-------------------------------------------------------------
Q 027562           60 -EKCP----LLLL--QVNA-------------------------------------------------------------   71 (222)
Q Consensus        60 -~~~~----~~~~--~~~~-------------------------------------------------------------   71 (222)
                       ...-    ..++  ..+.                                                             
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~  333 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT  333 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc
Confidence             1000    0000  0000                                                             


Q ss_pred             ----CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcccc--CchHhHHHHhcCCh---HHHHH
Q 027562           72 ----KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKE--KNTALHEAVCHQNV---DVVEI  142 (222)
Q Consensus        72 ----~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~a~~~~~~---~~~~~  142 (222)
                          ....+++.|+..|+.+++++|+++|++++                  .++..  +.||+|.|+.....   +++++
T Consensus       334 ~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN------------------~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        334 LYRFKHINKYFQKFDNRDPKVVEYILKNGNVVV------------------EDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             cccCCcchHHHHHHHcCCHHHHHHHHHcCCchh------------------hhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence                12223344444444444444444444433                  35655  46999998776654   46888


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHH----------hccchhHHHHHh
Q 027562          143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAM----------KSYFGKFSYTLS  212 (222)
Q Consensus       143 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~----------~~~~~~~~~Ll~  212 (222)
                      +++.|++ .+.+|..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+.          ....++++.|++
T Consensus       396 LIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs  474 (631)
T PHA02792        396 CKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILS  474 (631)
T ss_pred             HHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Confidence            8999999 67889999999999999999999999999999999999999999999975          233577999999


Q ss_pred             cCCcccc
Q 027562          213 VGISILI  219 (222)
Q Consensus       213 ~ga~~~~  219 (222)
                      +|+++.+
T Consensus       475 ~~p~i~~  481 (631)
T PHA02792        475 KLPTIEC  481 (631)
T ss_pred             cCCChhH
Confidence            9998753

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.93  E-value=1.3e-25  Score=152.11  Aligned_cols=140  Identities=15%  Similarity=0.130  Sum_probs=113.9

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCCh---HHHHH
Q 027562           66 LLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNV---DVVEI  142 (222)
Q Consensus        66 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~---~~~~~  142 (222)
                      .+..|..|.||||+|++.|+.  .+.+...+...+.           ....+...+..|.||||+|+..|..   +++++
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~-----------~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~   76 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDE-----------NRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKL   76 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcch-----------hHHHHHHhcCCCCEEEEeecccCchhHHHHHHH
Confidence            345688899999999999983  3344333322111           0112334688999999999999887   46889


Q ss_pred             HHhcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          143 LTKEDPDYPYSAN-NDGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       143 Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      |++.|++ .+..+ ..|+||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+++|+++++
T Consensus        77 Ll~~gad-in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         77 LMEWGAD-INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             HHHcCCC-ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            9999998 55666 589999999999999999999997 5999999999999999999999999999999999999865

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.93  E-value=2.9e-25  Score=151.72  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=129.7

Q ss_pred             HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHH---HHHHHHHhhhhh
Q 027562           23 EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSD---IVRVLVERAKLL   99 (222)
Q Consensus        23 ~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~---~~~~Ll~~~~~~   99 (222)
                      ++.+++..+..+.++||.  |++.|+.+.+..+++++...+..++..|..|+||||+|+..|+.+   ++++|+++|+++
T Consensus         9 ~~~~~~~~~~~~~~~l~~--a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi   86 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLR--ICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI   86 (166)
T ss_pred             cchHHhhhccCCCcHHHH--HHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC
Confidence            467777788889999999  889999876666666666666778888999999999999998765   489999999988


Q ss_pred             hhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 027562          100 QHENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTK-EDPDYPYSANNDGKTPLYMAADYRSSDMVLAL  177 (222)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  177 (222)
                      +.                  ++ ..|.||||+|+..++.+++++|+. .|++ .+..+..|.||||+|+..++.+++++|
T Consensus        87 n~------------------~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~L  147 (166)
T PHA02743         87 NA------------------RELGTGNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEIL  147 (166)
T ss_pred             CC------------------CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            76                  66 589999999999999999999995 7888 567899999999999999999999999


Q ss_pred             HhcCCCCccCCCCCc
Q 027562          178 LENSTSASHEGPNGK  192 (222)
Q Consensus       178 l~~g~~~~~~~~~g~  192 (222)
                      +++|++++.++..|.
T Consensus       148 l~~ga~~~~~~~~~~  162 (166)
T PHA02743        148 RANGAVCDDPLSIGL  162 (166)
T ss_pred             HHcCCCCCCcccCCc
Confidence            999999999888764

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=7.8e-25  Score=150.31  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=116.3

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC----hHHHHH
Q 027562           67 LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN----VDVVEI  142 (222)
Q Consensus        67 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~----~~~~~~  142 (222)
                      +.++..|.||||.|++.|+.++++.|+......            .....++.+|..|.||||+|+..|+    .+++++
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~------------~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~   82 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGD------------CHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDH   82 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccc------------hhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHH
Confidence            456789999999999999999999986532000            0011234488999999999999998    589999


Q ss_pred             HHhcCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          143 LTKEDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       143 Ll~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      |++.|++ .+.++. .|+||||+|+..++.+++++|++ .|++++..+..|+|||++|+..++.+++++|++.++.
T Consensus        83 Ll~~gad-in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741         83 LIELGAD-INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             HHHcCCC-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999 556664 89999999999999999999997 6999999999999999999999999999999998765

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.93  E-value=1.4e-26  Score=156.52  Aligned_cols=188  Identities=19%  Similarity=0.109  Sum_probs=146.2

Q ss_pred             HHHHHcCCchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhC
Q 027562            6 FKAAAAGNLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFG   84 (222)
Q Consensus         6 ~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~   84 (222)
                      -.+...|+.+.+.....-..+.+ .++.+|++.++.  ++-+++...+...+.    .+...+..+-.+++|+.+++...
T Consensus        67 ~~~~~s~nsd~~v~s~~~~~~~~~~t~p~g~~~~~v--~ap~~s~~k~sttlt----N~~rgnevs~~p~s~~slsVhql  140 (296)
T KOG0502|consen   67 TVAVRSGNSDVAVQSAQLDPDAIDETDPEGWSALLV--AAPCGSVDKVSTTLT----NGARGNEVSLMPWSPLSLSVHQL  140 (296)
T ss_pred             chhhhcCCcHHHHHhhccCCCCCCCCCchhhhhhhh--cCCCCCcceeeeeec----ccccCCccccccCChhhHHHHHH
Confidence            34555666666665555443322 445567777777  666665555544444    34445666667777777777666


Q ss_pred             CHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHH
Q 027562           85 HSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYM  164 (222)
Q Consensus        85 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~  164 (222)
                      +.+....+..                    ..++..|+.|.|||.||+..|.+++|++|++.|++ ++.......++|..
T Consensus       141 ~L~~~~~~~~--------------------n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAd-p~~lgk~resALsL  199 (296)
T KOG0502|consen  141 HLDVVDLLVN--------------------NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGAD-PDALGKYRESALSL  199 (296)
T ss_pred             HHHHHHHHhh--------------------ccccCccccCchHhHHHHhcCchHHHHHHHHcCCC-hhhhhhhhhhhHhH
Confidence            5555444433                    23556899999999999999999999999999999 77888888899999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          165 AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       165 a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      |...|..++|+.|++.+.++|..|-+|-|||-+|++.++.++++.||..||+++.-
T Consensus       200 At~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e  255 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQE  255 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999864

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=1.2e-25  Score=186.85  Aligned_cols=206  Identities=18%  Similarity=0.128  Sum_probs=146.8

Q ss_pred             hHHHHHHHcCCchhHHHHHHH--HHHHHhhhhcCCCchh-HHhhhcccccccHHHHHHHH--------------------
Q 027562            3 PNLFKAAAAGNLEPFKDIARE--VIKRLLTAKTKNTILH-VNIRSKESENASTKFVEEIL--------------------   59 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~~~L~-~~~a~~~~~~~~~~~l~~~~--------------------   59 (222)
                      .+++.|+++|+.+.++.+++.  +.+++..|..|.|||| .  |+..++.++++.|++..                    
T Consensus        19 ~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~--A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~   96 (743)
T TIGR00870        19 KAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVA--AIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDA   96 (743)
T ss_pred             HHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHH--HHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHH
Confidence            456667777777777776666  5555556666666666 4  55555555555554432                    


Q ss_pred             --------HhCCcc------cc----ccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc
Q 027562           60 --------EKCPLL------LL----QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN  121 (222)
Q Consensus        60 --------~~~~~~------~~----~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (222)
                              ......      .+    .....|.||||+|+..|+.++++.|+++|++++.++......    ........
T Consensus        97 v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~----~~~~~~~~  172 (743)
T TIGR00870        97 VEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV----KSQGVDSF  172 (743)
T ss_pred             HHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh----cCCCCCcc
Confidence                    111100      00    112469999999999999999999999999988532211000    00000123


Q ss_pred             ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcC---------CHHHHHHHHhcCCCC-------c
Q 027562          122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR---------SSDMVLALLENSTSA-------S  185 (222)
Q Consensus       122 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~g~~~-------~  185 (222)
                      ..|.+|+|.|+..|+.+++++|++.|++ .+..|..|+||||+|+..+         ...+.+++++.++..       +
T Consensus       173 ~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~  251 (743)
T TIGR00870       173 YHGESPLNAAACLGSPSIVALLSEDPAD-ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEV  251 (743)
T ss_pred             cccccHHHHHHHhCCHHHHHHHhcCCcc-hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhh
Confidence            5689999999999999999999999998 6688999999999999886         234667777766554       5


Q ss_pred             cCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          186 HEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       186 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                      ..|..|.|||++|+..|+.+++++|++.++
T Consensus       252 i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~  281 (743)
T TIGR00870       252 ILNHQGLTPLKLAAKEGRIVLFRLKLAIKY  281 (743)
T ss_pred             hcCCCCCCchhhhhhcCCccHHHHHHHHHH
Confidence            678999999999999999999999999643

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.93  E-value=2.3e-25  Score=185.06  Aligned_cols=176  Identities=19%  Similarity=0.189  Sum_probs=136.7

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH-HHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH-VAAKFGHSDIVRVLVERAKLLQHENEELESGIR  111 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~-~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  111 (222)
                      .++..++.  |++.|+.+.++.+++..  .+.+++..|..|+|||| .|+..++.++++.|+++|.    .+..+.+++.
T Consensus        16 ~~~~~~l~--A~~~g~~~~v~~lL~~~--~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh   87 (743)
T TIGR00870        16 DEEKAFLP--AAERGDLASVYRDLEEP--KKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLH   87 (743)
T ss_pred             HHHHHHHH--HHHcCCHHHHHHHhccc--cccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHH
Confidence            56778889  99999999998887631  15667888999999999 8889999999999999985    1111222221


Q ss_pred             hHHH------------H------------h----hhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCC---------
Q 027562          112 TARH------------M------------I----RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA---------  154 (222)
Q Consensus       112 ~~~~------------~------------~----~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~---------  154 (222)
                      .+..            .            .    ......|.||||.|+..|+.+++++|++.|++++ ..         
T Consensus        88 ~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~-~~~~~~~~~~~  166 (743)
T TIGR00870        88 AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP-ARACGDFFVKS  166 (743)
T ss_pred             HHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-cCcCCchhhcC
Confidence            1100            0            0    0112469999999999999999999999999844 32         


Q ss_pred             -----CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc---------cchhHHHHHhcCCcc
Q 027562          155 -----NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS---------YFGKFSYTLSVGISI  217 (222)
Q Consensus       155 -----~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~---------~~~~~~~Ll~~ga~~  217 (222)
                           ...|.||||.|+..++.+++++|+++|++++.+|..|+||||+|+..+         ...+.+++++.++..
T Consensus       167 ~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       167 QGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence                 135899999999999999999999999999999999999999999886         334667777776654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.5e-24  Score=155.64  Aligned_cols=177  Identities=24%  Similarity=0.202  Sum_probs=151.3

Q ss_pred             CchhHHHHHHH---------HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562           13 NLEPFKDIARE---------VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus        13 ~~~~v~~ll~~---------~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      +.+.|...+..         ..-+|..|..|+|+|||  ++.+++.++++.|+.   .+...++.++..|+||+++++..
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHY--sVSHaNF~VV~~LLD---SgvC~VD~qNrAGYtpiMLaALA  312 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHY--AVSHANFDVVSILLD---SGVCDVDQQNRAGYTPVMLAALA  312 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeee--eecccchHHHHHHhc---cCcccccccccccccHHHHHHHH
Confidence            45566665552         12345789999999999  999999999998877   46778999999999999998754


Q ss_pred             -----CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCC
Q 027562           84 -----GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDG  158 (222)
Q Consensus        84 -----~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g  158 (222)
                           .+.+++..|.+.|. +|.+                 -...|+|+|++|+.+|+.++++.|+..|++ .|.+|..|
T Consensus       313 ~lk~~~d~~vV~~LF~mgn-VNaK-----------------AsQ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDG  373 (452)
T KOG0514|consen  313 KLKQPADRTVVERLFKMGD-VNAK-----------------ASQHGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDG  373 (452)
T ss_pred             hhcchhhHHHHHHHHhccC-cchh-----------------hhhhcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCc
Confidence                 35678999988863 3331                 356799999999999999999999999999 77999999


Q ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhc
Q 027562          159 KTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       159 ~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      -|+|+.|+.+|+.++++.||. .+.++...|.+|.|+|.+|...|+.|+.-+|..|
T Consensus       374 STALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  374 STALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            999999999999999999996 6789999999999999999999999998887765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.92  E-value=1.3e-24  Score=170.01  Aligned_cols=194  Identities=25%  Similarity=0.205  Sum_probs=172.1

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      |+||.|+.+|+.++++.|++...-.+..+..|.+|||+  |++.|+.+++++++..    ...++..+..|.||||.|++
T Consensus        51 Talhha~Lng~~~is~llle~ea~ldl~d~kg~~plhl--aaw~g~~e~vkmll~q----~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   51 TLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHL--AAWNGNLEIVKMLLLQ----TDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             hHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEe--hhhcCcchHHHHHHhc----ccCCCcccccCcCccchhhh
Confidence            78999999999999999999877777788899999999  9999999999999874    35678888999999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCC-------CCCCC
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY-------PYSAN  155 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-------~~~~~  155 (222)
                      .|+.+++.+|+++|++...                  .+..+.|++..|+..|..++++.|++..-+.       ...++
T Consensus       125 hgh~dvv~~Ll~~~adp~i------------------~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~  186 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADPFI------------------RNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRP  186 (854)
T ss_pred             hcchHHHHHHHhcCCCccc------------------cCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCC
Confidence            9999999999999999877                  7889999999999999999999999863221       12345


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       156 ~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ..+.+|+|.|+++|+.++++.|++.|.+++....+ -|+||.|+..|..+++.+|++-|.+..+++
T Consensus       187 ~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~-gtalheaalcgk~evvr~ll~~gin~h~~n  251 (854)
T KOG0507|consen  187 FPAIYPLHLAAKNGHVECMQALLEAGFDINYTTED-GTALHEAALCGKAEVVRFLLEIGINTHIKN  251 (854)
T ss_pred             CCCcCCcchhhhcchHHHHHHHHhcCCCccccccc-chhhhhHhhcCcchhhhHHHhhcccccccc
Confidence            56789999999999999999999999999998754 589999999999999999999999877653

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=4.3e-25  Score=166.68  Aligned_cols=208  Identities=20%  Similarity=0.178  Sum_probs=144.4

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      .+..|+..|+.+-+..|+..|.+++..+.+|.|+||-  +|.-.+.++++++++.    +..++..|..++||||.|+..
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq--~~id~~~e~v~~l~e~----ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQ--ACIDDNLEMVKFLVEN----GANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCccchhHHH--HHhcccHHHHHHHHHh----cCCccccccccCCcchhhccc
Confidence            3678999999999999999999999999999999999  9999999999999884    566899999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHH------HHhhhccccCchHhHHHHhcCChHH---HHHHHhcCCCCCCCC
Q 027562           84 GHSDIVRVLVERAKLLQHENEELESGIRTAR------HMIRMTNKEKNTALHEAVCHQNVDV---VEILTKEDPDYPYSA  154 (222)
Q Consensus        84 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~a~~~~~~~~---~~~Ll~~~~~~~~~~  154 (222)
                      |+..++++|+++|+++...+.++..+.....      ......+..|.+ +-.+-......+   +...+..|.+ ....
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~-iea~R~~~e~~ml~D~~q~l~~G~~-~d~~  194 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGID-IEAARKAEEQTMLDDARQWLNAGAE-LDAR  194 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhccc-HHHHhhhhHHHHHHHHHHHHhcccc-cccc
Confidence            9999999999999988775544333222110      011111222222 111111111111   1122224444 3344


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       155 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      +..|-|.||.|+..|..++.++|++.|.+++.+|.+||||||.|+..+..++.++|+++|++.+.
T Consensus       195 ~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~  259 (527)
T KOG0505|consen  195 HARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDA  259 (527)
T ss_pred             ccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccch
Confidence            44577777777777777777777777777777777777777777777777777777777776654

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.91  E-value=1.2e-24  Score=170.25  Aligned_cols=195  Identities=27%  Similarity=0.327  Sum_probs=170.7

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH-------------HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccc
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV-------------IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ   68 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-------------~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~   68 (222)
                      ++.+..|++.|+.+.+..|++..             .+.+..|..|.|+||.  |+.+|+.++++.|++    ....++.
T Consensus         4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhh--a~Lng~~~is~llle----~ea~ldl   77 (854)
T KOG0507|consen    4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHH--AVLNGQNQISKLLLD----YEALLDL   77 (854)
T ss_pred             hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHH--HHhcCchHHHHHHhc----chhhhhh
Confidence            56788999999999999999921             2345788899999999  999999999999887    4556777


Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCC
Q 027562           69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  148 (222)
Q Consensus        69 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  148 (222)
                      .+.+|.+|||+|+..|+.++++.++.++..++.                  .+-.|.+|+|.|+..|..+++.+|++.|+
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na------------------~~~e~~tplhlaaqhgh~dvv~~Ll~~~a  139 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA------------------VNIENETPLHLAAQHGHLEVVFYLLKKNA  139 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccCCCc------------------ccccCcCccchhhhhcchHHHHHHHhcCC
Confidence            889999999999999999999999999866655                  78899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--------CccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS--------ASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       149 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      + +-..++.+.|++..|++.|..++++.|++....        -..++..+.+|+|.|+++|+.++++.|+++|.|+|.+
T Consensus       140 d-p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  140 D-PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             C-ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            9 668999999999999999999999999876321        1233446788999999999999999999999999976


Q ss_pred             c
Q 027562          221 F  221 (222)
Q Consensus       221 ~  221 (222)
                      .
T Consensus       219 t  219 (854)
T KOG0507|consen  219 T  219 (854)
T ss_pred             c
Confidence            3

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=2.2e-23  Score=143.12  Aligned_cols=136  Identities=21%  Similarity=0.212  Sum_probs=118.3

Q ss_pred             hhhhcCCCchhHHhhhcccccccHHHHHHHHH--hCCccccccccCCChHHHHHHHhCC----HHHHHHHHHhhhhhhhh
Q 027562           29 LTAKTKNTILHVNIRSKESENASTKFVEEILE--KCPLLLLQVNAKGETPLHVAAKFGH----SDIVRVLVERAKLLQHE  102 (222)
Q Consensus        29 ~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~  102 (222)
                      ..+..|.||||+  |++.|+.++++.++.++.  ..+..++.+|..|.||||+|+..|+    .+++++|+++|++++. 
T Consensus        16 ~~~~~g~t~Lh~--Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-   92 (169)
T PHA02741         16 EKNSEGENFFHE--AARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-   92 (169)
T ss_pred             ccccCCCCHHHH--HHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-
Confidence            467799999999  999999999998876541  2345678889999999999999998    5889999999988776 


Q ss_pred             hhHhhhhhhhHHHHhhhccc-cCchHhHHHHhcCChHHHHHHHh-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 027562          103 NEELESGIRTARHMIRMTNK-EKNTALHEAVCHQNVDVVEILTK-EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~-~~~~~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  180 (222)
                                       ++. .|.||||+|+..++.+++++|+. .|.+ .+..|..|+||||+|+..++.+++++|++.
T Consensus        93 -----------------~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~-~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         93 -----------------QEMLEGDTALHLAAHRRDHDLAEWLCCQPGID-LHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             -----------------CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence                             564 89999999999999999999997 4877 668899999999999999999999999998


Q ss_pred             CCCCc
Q 027562          181 STSAS  185 (222)
Q Consensus       181 g~~~~  185 (222)
                      ++...
T Consensus       155 ~~~~~  159 (169)
T PHA02741        155 VATSR  159 (169)
T ss_pred             HHHhc
Confidence            76543

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.89  E-value=3.2e-23  Score=140.47  Aligned_cols=136  Identities=21%  Similarity=0.236  Sum_probs=110.5

Q ss_pred             HHhhhhcCCCchhHHhhhcccccccHHHHHHHH--H-hCCccccccccCCChHHHHHHHhCCH---HHHHHHHHhhhhhh
Q 027562           27 RLLTAKTKNTILHVNIRSKESENASTKFVEEIL--E-KCPLLLLQVNAKGETPLHVAAKFGHS---DIVRVLVERAKLLQ  100 (222)
Q Consensus        27 ~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~--~-~~~~~~~~~~~~~~t~L~~a~~~~~~---~~~~~Ll~~~~~~~  100 (222)
                      .+..|..|.||||+  |+..|+.  .+.+....  . ..+..+...|..|.||||+|+..|+.   +++++|++.|++++
T Consensus        10 ~~~~d~~g~tpLh~--A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin   85 (154)
T PHA02736         10 ASEPDIEGENILHY--LCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN   85 (154)
T ss_pred             HHhcCCCCCCHHHH--HHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc
Confidence            34677899999999  9898873  22222211  1 11223456788999999999999986   46889999999877


Q ss_pred             hhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027562          101 HENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYRSSDMVLALL  178 (222)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  178 (222)
                      .                  ++ ..|.||||+|+..++.+++++|++. |.+ .+..+..|.||||+|+..++.+++++|+
T Consensus        86 ~------------------~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d-~n~~~~~g~tpL~~A~~~~~~~i~~~Ll  146 (154)
T PHA02736         86 G------------------KERVFGNTPLHIAVYTQNYELATWLCNQPGVN-MEILNYAFKTPYYVACERHDAKMMNILR  146 (154)
T ss_pred             c------------------cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCC-CccccCCCCCHHHHHHHcCCHHHHHHHH
Confidence            6                  66 5899999999999999999999985 777 6788999999999999999999999999


Q ss_pred             hcCCCCc
Q 027562          179 ENSTSAS  185 (222)
Q Consensus       179 ~~g~~~~  185 (222)
                      ++|++.+
T Consensus       147 ~~ga~~~  153 (154)
T PHA02736        147 AKGAQCK  153 (154)
T ss_pred             HcCCCCC
Confidence            9998865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.6e-22  Score=148.42  Aligned_cols=156  Identities=16%  Similarity=0.061  Sum_probs=117.3

Q ss_pred             hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCcccccc----ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhh
Q 027562           29 LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQV----NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENE  104 (222)
Q Consensus        29 ~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~  104 (222)
                      .+|..|.|+++++ |++.++.++++.|++.    +.+++.+    +..|.||||+|+..++.+++++|+++|++++..  
T Consensus        27 ~~d~~~~~~lL~~-A~~~~~~eivk~LL~~----GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~--   99 (300)
T PHA02884         27 KKNKICIANILYS-SIKFHYTDIIDAILKL----GADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRY--   99 (300)
T ss_pred             ccCcCCCCHHHHH-HHHcCCHHHHHHHHHC----CCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcc--
Confidence            4666777664442 6777888888888774    4445554    457889999999888999999999988887751  


Q ss_pred             HhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          105 ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                                     .+..|.||||.|+..++.+++++|++.|++ ++..|..|.||+|+|+..++.+++..+.  |.. 
T Consensus       100 ---------------~~~~g~TpLh~Aa~~~~~eivklLL~~GAd-in~kd~~G~TpL~~A~~~~~~~~~~~~~--~~~-  160 (300)
T PHA02884        100 ---------------AEEAKITPLYISVLHGCLKCLEILLSYGAD-INIQTNDMVTPIELALMICNNFLAFMIC--DNE-  160 (300)
T ss_pred             ---------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHhCChhHHHHhc--CCc-
Confidence                           135688899999988899999999988888 6677888889999988877777765554  322 


Q ss_pred             ccCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          185 SHEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       185 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                        .+..+.+|++++.   +.+++++|++|++
T Consensus       161 --~~~~~~~~~~~~~---n~ei~~~Lish~v  186 (300)
T PHA02884        161 --ISNFYKHPKKILI---NFDILKILVSHFI  186 (300)
T ss_pred             --ccccccChhhhhc---cHHHHHHHHHHHH
Confidence              2445667777653   6789999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.3e-22  Score=146.81  Aligned_cols=133  Identities=17%  Similarity=0.091  Sum_probs=112.6

Q ss_pred             cccccCCChH-HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           67 LQVNAKGETP-LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        67 ~~~~~~~~t~-L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      ..+|..+.|+ ||.|+..|+.+++++|+++|++++.++.              ..+..|.||||+|+..++.+++++|++
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~--------------~sd~~g~TpLh~Aa~~~~~eivklLL~   91 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFP--------------LSENSKTNPLIYAIDCDNDDAAKLLIR   91 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCc--------------ccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3456666665 6667888999999999999998876210              014689999999999999999999999


Q ss_pred             cCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          146 EDPDYPYSA-NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       146 ~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      .|++ ++.. +..|.||||.|+..++.+++++|+++|++++.++..|.||||+|+..++.+++..+...+
T Consensus        92 ~GAD-VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884         92 YGAD-VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDNE  160 (300)
T ss_pred             cCCC-cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence            9999 5554 568999999999999999999999999999999999999999999988888876665443

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-22  Score=159.75  Aligned_cols=211  Identities=20%  Similarity=0.185  Sum_probs=166.2

Q ss_pred             hHHHHHHHcCCchhHHHHHHHH---------HHHHhhhhcCCCchhHHhh-hcccccccHHHHHHHHHhCCccccc-ccc
Q 027562            3 PNLFKAAAAGNLEPFKDIAREV---------IKRLLTAKTKNTILHVNIR-SKESENASTKFVEEILEKCPLLLLQ-VNA   71 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~---------~~~~~~~~~g~~~L~~~~a-~~~~~~~~~~~l~~~~~~~~~~~~~-~~~   71 (222)
                      .++..|...|.++.+..+++.+         ++.+.....|+|+||.|+. ...++.+++..|++....--.++.. ...
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY  182 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEY  182 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhh
Confidence            4677788888888888887754         4444556799999999433 2345557788887764422111111 234


Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhH-----hhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEE-----LESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        72 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      .|.||||+|+.+.+.+++++|++.|++++.+.--     .+.........+...-..|+.||-.|+.-++.|++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            6999999999999999999999999999886421     11101112223333456799999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC--CccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          147 DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS--ASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       147 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      |+| ++.+|..|+|.||..+..-..+|.+.++++|++  ...+|..|-|||..|++.|..++++.+++..
T Consensus       263 gAd-~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~  331 (782)
T KOG3676|consen  263 GAD-PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR  331 (782)
T ss_pred             CCC-CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence            999 789999999999999999999999999999999  8899999999999999999999999999983

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.88  E-value=5.6e-23  Score=148.69  Aligned_cols=159  Identities=18%  Similarity=0.199  Sum_probs=135.7

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH-HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV-IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      ||+||+|+..+++++|+.||+.| .+++..+..|+||++++..+......-...+.+++.- +...-.-...|+|+|++|
T Consensus       269 NTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~gQTALMLA  347 (452)
T KOG0514|consen  269 NTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQHGQTALMLA  347 (452)
T ss_pred             CeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhhcchhhhhh
Confidence            79999999999999999999976 5667889999999999655666666556666665443 322233456799999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.++++.|+.+|+++|.                  +|..|.|+|+.|+.+|+.|+++.|+....+.....|..|-|
T Consensus       348 VSHGr~d~vk~LLacgAdVNi------------------QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST  409 (452)
T KOG0514|consen  348 VSHGRVDMVKALLACGADVNI------------------QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST  409 (452)
T ss_pred             hhcCcHHHHHHHHHccCCCcc------------------ccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence            999999999999999999887                  89999999999999999999999999866657789999999


Q ss_pred             HHHHHHHcCCHHHHHHHHh
Q 027562          161 PLYMAADYRSSDMVLALLE  179 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~  179 (222)
                      +|.+|...|+.+|.-.|..
T Consensus       410 Al~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  410 ALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             hhhhHHhcCchHHHHHHHH
Confidence            9999999999999877764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.88  E-value=4.2e-22  Score=122.46  Aligned_cols=89  Identities=30%  Similarity=0.384  Sum_probs=81.2

Q ss_pred             hHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhH
Q 027562          128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF  207 (222)
Q Consensus       128 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  207 (222)
                      ||+|+..|+.+++++|++.+.+.. .    |.||||+|+..++.+++++|+++|++++.++..|+||||+|+..++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            689999999999999999887733 2    88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCcccccc
Q 027562          208 SYTLSVGISILISF  221 (222)
Q Consensus       208 ~~Ll~~ga~~~~~~  221 (222)
                      ++|+++|++++.++
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999999864

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=8.6e-22  Score=149.02  Aligned_cols=157  Identities=25%  Similarity=0.283  Sum_probs=126.2

Q ss_pred             hhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccc
Q 027562           43 RSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNK  122 (222)
Q Consensus        43 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (222)
                      |+..+..+-+..++..    +...+..+.+|.|+||-+|...+.+|+++|+++|++++.                  .|.
T Consensus        47 A~~~~d~~ev~~ll~~----ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~------------------~d~  104 (527)
T KOG0505|consen   47 ACSRGDLEEVRKLLNR----GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNA------------------QDN  104 (527)
T ss_pred             ccccccHHHHHHHhcc----CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccc------------------ccc
Confidence            6777777777777663    344588899999999999999999999999999999888                  899


Q ss_pred             cCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCC--------------H------------HHHHH
Q 027562          123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS--------------S------------DMVLA  176 (222)
Q Consensus       123 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~--------------~------------~~~~~  176 (222)
                      .++||+|.|+..|+..+++++++.|++.. ..+..|..|...+..--.              .            .-+..
T Consensus       105 e~wtPlhaaascg~~~i~~~li~~gA~~~-avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q  183 (527)
T KOG0505|consen  105 EGWTPLHAAASCGYLNIVEYLIQHGANLL-AVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQ  183 (527)
T ss_pred             ccCCcchhhcccccHHHHHHHHHhhhhhh-hccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHH
Confidence            99999999999999999999999998733 445555444433321111              0            11223


Q ss_pred             HHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccccC
Q 027562          177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       177 Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      .+..|...+..+..|-|+||.|.-.|+.++.++|+++|.+++++||
T Consensus       184 ~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  184 WLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             HHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence            3347888888888899999999999999999999999999999986

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.85  E-value=1.1e-20  Score=123.62  Aligned_cols=138  Identities=25%  Similarity=0.200  Sum_probs=120.3

Q ss_pred             hhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccc
Q 027562           43 RSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNK  122 (222)
Q Consensus        43 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (222)
                      |+..+....|+.|++.   ....+|.+|.+|+||||-|+-+|+.++++.|+..|++.+.                  +..
T Consensus        70 aae~nrl~eV~~lL~e---~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a------------------~T~  128 (228)
T KOG0512|consen   70 AAEKNRLTEVQRLLSE---KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA------------------KTN  128 (228)
T ss_pred             HHhhccHHHHHHHHHh---ccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc------------------ccc
Confidence            7777777777777663   5567899999999999999999999999999999999887                  788


Q ss_pred             cCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHH-HHHHHH-hcCCCCccCCCCCccHHHHHHH
Q 027562          123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD-MVLALL-ENSTSASHEGPNGKTALHAAAM  200 (222)
Q Consensus       123 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~-~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~  200 (222)
                      .|.||||.||...+.+++..|+++|++ .+.......||||.|+...+.. .+++|+ ..+..+..++..+.||+.+|-+
T Consensus       129 ~GWTPLhSAckWnN~~va~~LLqhgaD-VnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  129 EGWTPLHSACKWNNFEVAGRLLQHGAD-VNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             cCccchhhhhcccchhHHHHHHhccCc-ccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHH
Confidence            999999999999999999999999999 6688888899999999877764 456665 5788888999999999999986


Q ss_pred             hc
Q 027562          201 KS  202 (222)
Q Consensus       201 ~~  202 (222)
                      -+
T Consensus       208 T~  209 (228)
T KOG0512|consen  208 TS  209 (228)
T ss_pred             hh
Confidence            54

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.85  E-value=2.3e-22  Score=163.28  Aligned_cols=214  Identities=18%  Similarity=0.130  Sum_probs=182.1

Q ss_pred             CChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccc-cccccCCChHHHH
Q 027562            1 MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLL-LQVNAKGETPLHV   79 (222)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~t~L~~   79 (222)
                      ++|+|..||..|+-|.+..|+.+|.++...|+.|.+||.+  |+..|+..+++.|+..    ...+ ...|..+.|+|.+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plIm--aatagh~tvV~~llk~----ha~veaQsdrtkdt~lSl  830 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIM--AATAGHITVVQDLLKA----HADVEAQSDRTKDTMLSL  830 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhh--hcccCchHHHHHHHhh----hhhhhhhcccccCceEEE
Confidence            5789999999999999999999999998999999999999  9999999888888774    2223 3457789999999


Q ss_pred             HHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhh--hccccCchHhHHHHhcCChHHHHH
Q 027562           80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIR--MTNKEKNTALHEAVCHQNVDVVEI  142 (222)
Q Consensus        80 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~~~l~~a~~~~~~~~~~~  142 (222)
                      ||..|+.++++.|+..|++-..++...-+++...               ...++  .-.+.|-.||+.|..+|+...++.
T Consensus       831 acsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~  910 (2131)
T KOG4369|consen  831 ACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLS  910 (2131)
T ss_pred             ecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHH
Confidence            9999999999999999998888776543333322               11111  134557889999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       143 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      |++.|.+++-....+-+|+|-.|+..++.+++..||.+.+++..+-+.|.|||+-++..|.+|+-.+||..|||.|..
T Consensus       911 ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  911 LLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             HhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccC
Confidence            999999976666777889999999999999999999999999999999999999999999999999999999999863

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=3.2e-21  Score=136.09  Aligned_cols=140  Identities=27%  Similarity=0.265  Sum_probs=117.6

Q ss_pred             CCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHH
Q 027562           62 CPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVE  141 (222)
Q Consensus        62 ~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  141 (222)
                      ...+.|..|..|.+|||.|++.|+..+++.|++.|+.++.                  .+....||||.|+..|+.++++
T Consensus        23 tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~------------------tnmgddtplhlaaahghrdivq   84 (448)
T KOG0195|consen   23 TEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS------------------TNMGDDTPLHLAAAHGHRDIVQ   84 (448)
T ss_pred             cccccccccccCcchhhhhhhcccHHHHHHHHhccccccc------------------ccCCCCcchhhhhhcccHHHHH
Confidence            4456778888899999999999999999999999988776                  6777788999999999999999


Q ss_pred             HHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          142 ILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       142 ~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      .|++..++ .+..+..|+|||||||.-|...+.+-|+..|+.++.-++.|.||+..|-..-...+.+.--++|-+++..
T Consensus        85 kll~~kad-vnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen   85 KLLSRKAD-VNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             HHHHHhcc-cchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence            99998888 6688899999999999999999999999999999999999999998886554445556666778877754

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.85  E-value=5.1e-20  Score=120.37  Aligned_cols=124  Identities=30%  Similarity=0.481  Sum_probs=113.9

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCC
Q 027562           69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  148 (222)
Q Consensus        69 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  148 (222)
                      .+..|.||||.|+..++.+++++|++.+...+.                  .+..|.+|+|.|+..++.+++++|++.++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~------------------~~~~g~~~l~~a~~~~~~~~~~~ll~~~~   64 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNA------------------KDNDGRTPLHLAAKNGHLEIVKLLLEKGA   64 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Confidence            457899999999999999999999999877544                  78899999999999999999999999997


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHH
Q 027562          149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL  211 (222)
Q Consensus       149 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  211 (222)
                      . .+..+..+.||+|.|+..++.+++++|+++|.+++..+..+.||++.|...++.+++++|+
T Consensus        65 ~-~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          65 D-VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             C-ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            6 5567788999999999999999999999999999999999999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.82  E-value=2.5e-19  Score=110.07  Aligned_cols=89  Identities=31%  Similarity=0.467  Sum_probs=79.5

Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC
Q 027562           77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  156 (222)
Q Consensus        77 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (222)
                      ||.|++.|+.+++++|++.+.+++                     . |++|+|+|+..|+.+++++|++.|++ ++..|.
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~---------------------~-~~~~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~   57 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN---------------------L-GNTALHYAAENGNLEIVKLLLENGAD-INSQDK   57 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT---------------------S-SSBHHHHHHHTTTHHHHHHHHHTTTC-TT-BST
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC---------------------C-CCCHHHHHHHcCCHHHHHHHHHhccc-ccccCC
Confidence            799999999999999999876532                     2 88999999999999999999999998 668889


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCC
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEG  188 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  188 (222)
                      .|+||||+|+..++.+++++|+++|++++.+|
T Consensus        58 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   58 NGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             TSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999999999999998875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.80  E-value=3.8e-19  Score=116.42  Aligned_cols=142  Identities=21%  Similarity=0.148  Sum_probs=119.9

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHH-HhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKR-LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      .+.+|+..+.++.|+.|++..++. |.+|.+|+||||-  |+.+|+.++++.|+..    +...+.+...|+||||-||.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHR--AaYn~h~div~~ll~~----gAn~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHR--AAYNGHLDIVHELLLS----GANKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHH--HHhcCchHHHHHHHHc----cCCcccccccCccchhhhhc
Confidence            367999999999999999987774 5899999999999  9999999999999884    45567788899999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC-hHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN-VDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      -++.+++..|+++|++++.                  ......||||.|+...+ ...+++|+......+...+..+.||
T Consensus       140 WnN~~va~~LLqhgaDVnA------------------~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta  201 (228)
T KOG0512|consen  140 WNNFEVAGRLLQHGADVNA------------------QTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETA  201 (228)
T ss_pred             ccchhHHHHHHhccCcccc------------------cccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchH
Confidence            9999999999999999887                  67788999999997654 4566776654333366778889999


Q ss_pred             HHHHHHcC
Q 027562          162 LYMAADYR  169 (222)
Q Consensus       162 l~~a~~~~  169 (222)
                      +.+|-..+
T Consensus       202 ~~iARRT~  209 (228)
T KOG0512|consen  202 FDIARRTS  209 (228)
T ss_pred             HHHHHHhh
Confidence            99986553

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1.3e-19  Score=127.96  Aligned_cols=153  Identities=24%  Similarity=0.209  Sum_probs=123.2

Q ss_pred             HHcCCchhHHHHHH-HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHH
Q 027562            9 AAAGNLEPFKDIAR-EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSD   87 (222)
Q Consensus         9 ~~~g~~~~v~~ll~-~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~   87 (222)
                      |+.|+.=-|+..++ ..-|.|..|..|.+||||  +|+.|+..++++|+.    .+..+|..+....||||+|+..|+.+
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhw--aakegh~aivemll~----rgarvn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHW--AAKEGHVAIVEMLLS----RGARVNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhh--hhhcccHHHHHHHHh----cccccccccCCCCcchhhhhhcccHH
Confidence            45555555555555 345556788899999999  999999999999988    56678899999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHH
Q 027562           88 IVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD  167 (222)
Q Consensus        88 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~  167 (222)
                      +++.|++..++++.                  .+..|.||||+||..|.-.+.+-|++.|+- .+..+..|.||+..|.-
T Consensus        82 ivqkll~~kadvna------------------vnehgntplhyacfwgydqiaedli~~ga~-v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   82 IVQKLLSRKADVNA------------------VNEHGNTPLHYACFWGYDQIAEDLISCGAA-VNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHHHHHhcccch------------------hhccCCCchhhhhhhcHHHHHHHHHhccce-eeecccCCCCchhhhch
Confidence            99999999988777                  889999999999999999999999999998 66889999999998743


Q ss_pred             cCCHHHHHHHHhcCCCCcc
Q 027562          168 YRSSDMVLALLENSTSASH  186 (222)
Q Consensus       168 ~~~~~~~~~Ll~~g~~~~~  186 (222)
                      .-...+.+.--++|-+++.
T Consensus       143 ~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  143 MLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HHHHHHHHHHHHhCCCCCc
Confidence            3222233333346665543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.78  E-value=6.8e-19  Score=103.06  Aligned_cols=92  Identities=22%  Similarity=0.207  Sum_probs=82.7

Q ss_pred             hHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccch
Q 027562          126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFG  205 (222)
Q Consensus       126 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  205 (222)
                      ..+.|++++|..+-|+..+..|-+.+  ....|++|||+|+.+|+.+++++|+..|++++.+|+.|.|||..|++.|+.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn--~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVN--EIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHH--HHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            45778999999999999998886533  2347899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCcccc
Q 027562          206 KFSYTLSVGISILI  219 (222)
Q Consensus       206 ~~~~Ll~~ga~~~~  219 (222)
                      ++++||+.|||-.+
T Consensus        82 cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   82 CVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHHcCcccce
Confidence            99999999998654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=2.1e-19  Score=146.43  Aligned_cols=217  Identities=19%  Similarity=0.149  Sum_probs=148.3

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCC------------------
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCP------------------   63 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~------------------   63 (222)
                      +||..|+-.|+...|+.|++..+++. ..|..+.|+|.+  ||..|..++++.|+..+...+                  
T Consensus       792 ~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSl--acsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy  869 (2131)
T KOG4369|consen  792 VPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSL--ACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGY  869 (2131)
T ss_pred             hhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEE--ecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcch
Confidence            45666666666666666666666655 445566666666  666666666666655443321                  


Q ss_pred             -----------ccccc--cccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhH----------------hhhhhhhHH
Q 027562           64 -----------LLLLQ--VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEE----------------LESGIRTAR  114 (222)
Q Consensus        64 -----------~~~~~--~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~----------------~~~~~~~~~  114 (222)
                                 ..++.  -.+.|-+||.+|..+|+....+.|++.|.+++.+-+.                ....+....
T Consensus       870 ~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~  949 (2131)
T KOG4369|consen  870 TKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQ  949 (2131)
T ss_pred             HHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHh
Confidence                       11121  1234566666666666666666666666655553221                111112223


Q ss_pred             HHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCcc
Q 027562          115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKT  193 (222)
Q Consensus       115 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  193 (222)
                      ..+..+-+.|.|||+.++..|.+|+-++|+..|+|.+-. ......|.|-+++..|+...++.|+...+.++.++++|+|
T Consensus       950 anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T 1029 (2131)
T KOG4369|consen  950 ANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCT 1029 (2131)
T ss_pred             hhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCc
Confidence            344567788999999999999999999999999884322 2334568888888899999999999888889999999999


Q ss_pred             HHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          194 ALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +|..|+..|....+..|++++||++-++
T Consensus      1030 ~Lwla~~Gg~lss~~il~~~~ad~d~qd 1057 (2131)
T KOG4369|consen 1030 VLWLASAGGALSSCPILVSSVADADQQD 1057 (2131)
T ss_pred             ccchhccCCccccchHHhhcccChhhhh
Confidence            9999999999999999999999987654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.75  E-value=2.1e-17  Score=107.89  Aligned_cols=124  Identities=34%  Similarity=0.463  Sum_probs=108.1

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      .+..|.||||+  |+..++.+.++++++.    +...+..+..|.+|+|.|+..++.+++++|++.+..++.        
T Consensus         3 ~~~~g~t~l~~--a~~~~~~~~i~~li~~----~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~--------   68 (126)
T cd00204           3 RDEDGRTPLHL--AASNGHLEVVKLLLEN----GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA--------   68 (126)
T ss_pred             cCcCCCCHHHH--HHHcCcHHHHHHHHHc----CCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc--------
Confidence            45689999999  9999999888888774    333367788999999999999999999999999875554        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL  178 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  178 (222)
                                .+..+.+|+|+|+..++.+++++|++.+.+ .+..+..+.||++.|...++.+++++|+
T Consensus        69 ----------~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          69 ----------RDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence                      678899999999999999999999999876 5567889999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=7.8e-17  Score=116.13  Aligned_cols=131  Identities=30%  Similarity=0.399  Sum_probs=122.5

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC-----hHHH
Q 027562           66 LLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN-----VDVV  140 (222)
Q Consensus        66 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-----~~~~  140 (222)
                      ....+..+.++++.++..+...++++++..|.+++.                  .+..|.||+|+|+..++     .+++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~g~t~l~~a~~~~~~~~~~~~~~  127 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA------------------KDADGDTPLHLAALNGNPPEGNIEVA  127 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc------------------ccCCCCcHHHHHHhcCCcccchHHHH
Confidence            445566799999999999999999999999998866                  89999999999999999     9999


Q ss_pred             HHHHhcCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          141 EILTKEDP--DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       141 ~~Ll~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      +.|++.|.  +.....+..|+||||+|+..++.++++.|++.|++++..+..|.|+++.|+..++.++++.++++|
T Consensus       128 ~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         128 KLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999  567788999999999999999999999999999999999999999999999999999999999976

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.72  E-value=1.8e-16  Score=126.04  Aligned_cols=159  Identities=22%  Similarity=0.232  Sum_probs=130.7

Q ss_pred             ChHHHHHHHc---CCchhHHHHHHHHHHHH-----hhhhcCCCchhHHhhhcccccccHHHHHHHHHhC-----Cccccc
Q 027562            2 DPNLFKAAAA---GNLEPFKDIAREVIKRL-----LTAKTKNTILHVNIRSKESENASTKFVEEILEKC-----PLLLLQ   68 (222)
Q Consensus         2 ~~~l~~A~~~---g~~~~v~~ll~~~~~~~-----~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~-----~~~~~~   68 (222)
                      +|.||.|..+   +..++++.|++.-+...     ...+.|.||||+  |..+.+.+++..|++...+-     +.-...
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHi--AIv~~~~~~V~lLl~~gADV~aRa~G~FF~~  221 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHI--AIVNRDAELVRLLLAAGADVHARACGAFFCP  221 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHH--HHHhccHHHHHHHHHcCCchhhHhhccccCc
Confidence            4789988874   34588999998544321     456789999999  99999999999998864331     111111


Q ss_pred             c--------------ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhc
Q 027562           69 V--------------NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH  134 (222)
Q Consensus        69 ~--------------~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  134 (222)
                      .              -..|..||..|++.++.+++++|+++|++++.                  +|..|+|.||..+..
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~a------------------qDS~GNTVLH~lVi~  283 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNA------------------QDSNGNTVLHMLVIH  283 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCc------------------cccCCChHHHHHHHH
Confidence            1              12588999999999999999999999999887                  899999999999999


Q ss_pred             CChHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 027562          135 QNVDVVEILTKEDPD-YPYSANNDGKTPLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       135 ~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  180 (222)
                      ...+|.+.+++.|++ .....|.+|-|||..|++.|..+|.+.+++.
T Consensus       284 ~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  284 FVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999887 3457899999999999999999999999987

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.70  E-value=1.3e-16  Score=93.51  Aligned_cols=105  Identities=23%  Similarity=0.235  Sum_probs=93.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCC
Q 027562           75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  154 (222)
Q Consensus        75 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  154 (222)
                      .-+..++++|..+-++..+..|.+++.                   ...|++|+|+|+-.|+.+++++|++.|++ .+.+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~-------------------~~ggR~plhyAAD~GQl~ilefli~iGA~-i~~k   63 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE-------------------IYGGRTPLHYAADYGQLSILEFLISIGAN-IQDK   63 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH-------------------HhCCcccchHhhhcchHHHHHHHHHhccc-cCCc
Confidence            345678899999999998888876664                   45899999999999999999999999999 6788


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       155 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                      |..|-|||..|+..|+.++|++|++.|++...+..+|.+.+..+-
T Consensus        64 DKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   64 DKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             cccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhcc
Confidence            999999999999999999999999999999999988988775543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.65  E-value=4.9e-16  Score=85.70  Aligned_cols=54  Identities=31%  Similarity=0.452  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHH
Q 027562          158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTL  211 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  211 (222)
                      |+||+|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            578889998888899999998888888888888999999999999888888886

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=1.6e-15  Score=124.26  Aligned_cols=96  Identities=22%  Similarity=0.253  Sum_probs=89.7

Q ss_pred             hHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccch
Q 027562          126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFG  205 (222)
Q Consensus       126 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  205 (222)
                      ..|+.|+..|+.+.++.|++.|++ ++..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD-PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHH
Confidence            458899999999999999999999 6688999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhc-------CCccccccC
Q 027562          206 KFSYTLSV-------GISILISFY  222 (222)
Q Consensus       206 ~~~~Ll~~-------ga~~~~~~~  222 (222)
                      ++++|+++       |++++..+|
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~  186 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSF  186 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCcccc
Confidence            99999999       888876543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=1.1e-15  Score=84.75  Aligned_cols=56  Identities=34%  Similarity=0.490  Sum_probs=33.2

Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHH
Q 027562          143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA  198 (222)
Q Consensus       143 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  198 (222)
                      |++.|+...+..|..|.||||+|+.+++.+++++|++.|++++.+|..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            46667444778999999999999999999999999999999999999999999987

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=3e-15  Score=113.91  Aligned_cols=94  Identities=24%  Similarity=0.271  Sum_probs=84.7

Q ss_pred             hHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhH
Q 027562          128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF  207 (222)
Q Consensus       128 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~  207 (222)
                      |.-|+..|.+|+|+-++..--| +...+..|.|+||-|+-.|+.+||+||+++|+++|..|.+||||||.|+..++..+.
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D-pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD-PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC-CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            4557788999999999987666 556788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCccccccC
Q 027562          208 SYTLSVGISILISFY  222 (222)
Q Consensus       208 ~~Ll~~ga~~~~~~~  222 (222)
                      +.|+++||-|+...|
T Consensus       633 kqLVe~GaavfAsTl  647 (752)
T KOG0515|consen  633 KQLVESGAAVFASTL  647 (752)
T ss_pred             HHHHhccceEEeeec
Confidence            999999998887653

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.58  E-value=1.6e-14  Score=118.56  Aligned_cols=105  Identities=26%  Similarity=0.298  Sum_probs=96.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC
Q 027562           76 PLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN  155 (222)
Q Consensus        76 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  155 (222)
                      .|+.|+..|+.+.++.|++.|++++.                  .|..|.||||+|+..|+.+++++|++.|++ .+..|
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~------------------~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad-vn~~d  145 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC------------------RDYDGRTPLHIACANGHVQVVRVLLEFGAD-PTLLD  145 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC------------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCC
Confidence            58889999999999999999998776                  789999999999999999999999999999 67899


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhc-------CCCCccCCCCCccHHHHHH
Q 027562          156 NDGKTPLYMAADYRSSDMVLALLEN-------STSASHEGPNGKTALHAAA  199 (222)
Q Consensus       156 ~~g~t~l~~a~~~~~~~~~~~Ll~~-------g~~~~~~~~~g~t~l~~a~  199 (222)
                      ..|.||||+|+..++.+++++|+++       |++.+..+..|.+|+..+.
T Consensus       146 ~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        146 KDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999999999999999998       8888888888888776554

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=6e-14  Score=101.01  Aligned_cols=128  Identities=27%  Similarity=0.383  Sum_probs=111.7

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCC-----HHHHHHHHHhhh--hhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGH-----SDIVRVLVERAK--LLQHE  102 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~-----~~~~~~Ll~~~~--~~~~~  102 (222)
                      .+..+.++++.  ++..+..+++..++.    .+..++..+..|.||||.|+..++     .++++.|++.|+  .... 
T Consensus        69 ~~~~~~~~~~~--~~~~~~~~~~~~l~~----~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~-  141 (235)
T COG0666          69 RDLDGRLPLHS--AASKGDDKIVKLLLA----SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-  141 (235)
T ss_pred             CCccccCHHHH--HHHcCcHHHHHHHHH----cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCcc-
Confidence            34458899999  888888877756555    456678999999999999999999     999999999999  3322 


Q ss_pred             hhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 027562          103 NEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  181 (222)
                                      ..+..|.||+|+|+..|+.++++.+++.|++ ....+..|.|+++.|+..++.++++.+++.+
T Consensus       142 ----------------~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         142 ----------------LRDEDGNTPLHWAALNGDADIVELLLEAGAD-PNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             ----------------ccCCCCCchhHHHHHcCchHHHHHHHhcCCC-CcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence                            2689999999999999999999999999998 6677999999999999999999999999876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.54  E-value=1.6e-13  Score=97.37  Aligned_cols=121  Identities=20%  Similarity=0.201  Sum_probs=109.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCC
Q 027562           72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  151 (222)
Q Consensus        72 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  151 (222)
                      ...+||.-++..|+.+-...|++-....+.                  .|..|.++|..|+..|+.++++.|++.|+|++
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~------------------~D~sGMs~LahAaykGnl~~v~lll~~gaDvN   72 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQ------------------RDPSGMSVLAHAAYKGNLTLVELLLELGADVN   72 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhc------------------cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC
Confidence            346788889999999988888886554554                  89999999999999999999999999999988


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHH
Q 027562          152 YSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYT  210 (222)
Q Consensus       152 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  210 (222)
                      ..++..+.||||+|+..|+.++.+.|++.|+.....|.-|+|+-..|+.-|+-+++..+
T Consensus        73 ~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   73 DKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            77888899999999999999999999999999999999999999999999998888654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.54  E-value=3e-14  Score=78.49  Aligned_cols=54  Identities=35%  Similarity=0.476  Sum_probs=45.3

Q ss_pred             CchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Q 027562          124 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL  178 (222)
Q Consensus       124 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  178 (222)
                      |.||+|+|+..|+.+++++|++.|.+ ++..|..|+||||+|+..++.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999999 6677999999999999999999999986

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.53  E-value=4.9e-14  Score=107.43  Aligned_cols=121  Identities=26%  Similarity=0.309  Sum_probs=102.0

Q ss_pred             CChHHHH---HHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCC
Q 027562           73 GETPLHV---AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  149 (222)
Q Consensus        73 ~~t~L~~---a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  149 (222)
                      ..+||-+   |+..|-.+.++..+..-.++..                  .+.+|-|+||.|+..|+.++|+||++.|++
T Consensus       547 rfnPLaLLLDaaLeGEldlVq~~i~ev~DpSq------------------pNdEGITaLHNAiCaghyeIVkFLi~~gan  608 (752)
T KOG0515|consen  547 RFNPLALLLDAALEGELDLVQRIIYEVTDPSQ------------------PNDEGITALHNAICAGHYEIVKFLIEFGAN  608 (752)
T ss_pred             ecchHHHHHhhhhcchHHHHHHHHHhhcCCCC------------------CCccchhHHhhhhhcchhHHHHHHHhcCCc
Confidence            4455544   6677888888888876555444                  788999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccC-CCCCccHHHHH--HHhccchhHHHHHh
Q 027562          150 YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE-GPNGKTALHAA--AMKSYFGKFSYTLS  212 (222)
Q Consensus       150 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~-~~~g~t~l~~a--~~~~~~~~~~~Ll~  212 (222)
                       .+..|.+||||||.|+.+++.-+++.|.+.|+.+... -.++.|+...+  ...|+.+|.+||..
T Consensus       609 -VNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  609 -VNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             -ccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence             7799999999999999999999999999999988764 45788998877  46688889988854

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=1.1e-13  Score=76.59  Aligned_cols=48  Identities=35%  Similarity=0.512  Sum_probs=31.8

Q ss_pred             hhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHH
Q 027562          117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA  165 (222)
Q Consensus       117 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a  165 (222)
                      ++..|..|.||||+|+..|+.+++++|++.|++ .+.+|..|+||+|+|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d-~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD-PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC-CCCCcCCCCCHHHhC
Confidence            344899999999999999999999999999999 779999999999987

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.42  E-value=1.3e-12  Score=92.81  Aligned_cols=121  Identities=17%  Similarity=0.155  Sum_probs=107.1

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      .||..++.+|+.+.+..|+..--..+..|..|.++|.-  |+..|+.+.++.++++..+   ....++..++||||.|+.
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~Lah--AaykGnl~~v~lll~~gaD---vN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAH--AAYKGNLTLVELLLELGAD---VNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHH--HHhcCcHHHHHHHHHhCCC---cCcccccccccHHHHHHH
Confidence            58999999999999999999877788899999999999  9999999999999986433   234467889999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      +|+.++.+.|++.|+....                  .+..|+|+-..|+.-|+.++|..+-..
T Consensus        89 SGn~dvcrllldaGa~~~~------------------vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYL------------------VNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             cCCchHHHHHHhccCcccc------------------ccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            9999999999999988766                  788999999999999999998877654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.27  E-value=4.8e-12  Score=60.09  Aligned_cols=30  Identities=33%  Similarity=0.430  Sum_probs=23.5

Q ss_pred             CCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      +|+||||+|+..|+.+++++|+++|+|||.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            477888888888888888888888887763

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.19  E-value=2.4e-11  Score=59.43  Aligned_cols=32  Identities=28%  Similarity=0.230  Sum_probs=25.8

Q ss_pred             CCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +|.||||+|+..++.+++++|+++|+++++++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47788888888888888888888888887764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.16  E-value=3.1e-11  Score=97.06  Aligned_cols=84  Identities=23%  Similarity=0.219  Sum_probs=77.2

Q ss_pred             hhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHH
Q 027562          117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALH  196 (222)
Q Consensus       117 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  196 (222)
                      .+++|..|++++|.++..+..++++||+++|.++.-.....|+||||.|+.+|+.+++-.|+.+|+++..+|++|.+||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56689999999999999999999999999999954344457999999999999999999999999999999999999999


Q ss_pred             HHHH
Q 027562          197 AAAM  200 (222)
Q Consensus       197 ~a~~  200 (222)
                      +.++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            9886

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.10  E-value=2.9e-11  Score=97.22  Aligned_cols=83  Identities=23%  Similarity=0.189  Sum_probs=73.8

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCC-CCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          139 VVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP-NGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       139 ~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      +--++-+.+.+..+..|..|+++||+++..+..++++||+++|+++..+|. .|+||||.|+.+|+++++-+||++|+++
T Consensus        33 lk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   33 LKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             HHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            334445556666778999999999999999999999999999999999987 5999999999999999999999999998


Q ss_pred             cccc
Q 027562          218 LISF  221 (222)
Q Consensus       218 ~~~~  221 (222)
                      .+.|
T Consensus       113 ~i~D  116 (1267)
T KOG0783|consen  113 RIKD  116 (1267)
T ss_pred             EEec
Confidence            8865

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.07  E-value=9.3e-10  Score=83.88  Aligned_cols=88  Identities=17%  Similarity=0.130  Sum_probs=81.2

Q ss_pred             hHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccch
Q 027562          126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFG  205 (222)
Q Consensus       126 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  205 (222)
                      ..||.+++.|+.+..--|+..|++.+..-...|.||||.|++.|+..-++.|+=+|+|+...|.+|.||+.+|-..|+-+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            35899999999999999999999966666778999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhc
Q 027562          206 KFSYTLSV  213 (222)
Q Consensus       206 ~~~~Ll~~  213 (222)
                      +.+.|++-
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            98888763

>PF13606 Ank_3: Ankyrin repeat

Probab=99.07  E-value=3e-10  Score=53.89  Aligned_cols=29  Identities=34%  Similarity=0.528  Sum_probs=24.4

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCc
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSAS  185 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  185 (222)
                      +|+||||+|+..++.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            47888888888888888888888888876

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.00  E-value=8.7e-10  Score=53.82  Aligned_cols=32  Identities=34%  Similarity=0.479  Sum_probs=27.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCC
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEG  188 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  188 (222)
                      .|+||||+|+..++.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47889999999999999999999999988876

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.97  E-value=2.1e-09  Score=83.55  Aligned_cols=96  Identities=22%  Similarity=0.215  Sum_probs=86.6

Q ss_pred             hccccCchHhHHHHhcCChHHHHHHHhcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHH
Q 027562          119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPD-YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHA  197 (222)
Q Consensus       119 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  197 (222)
                      .++....+.||+|++.|+-++|++++++|+. +....|..|.|+||.|+-.++-.+..+|.+.|+++...|..|.||-..
T Consensus       894 ~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  894 IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHH
Confidence            3677788999999999999999999999873 334667899999999999999999999999999999999999999999


Q ss_pred             HHHhccchhHHHHHhcC
Q 027562          198 AAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       198 a~~~~~~~~~~~Ll~~g  214 (222)
                      |-+.+..++.-+|-.+-
T Consensus       974 aqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             HHhcCCchHHHHHhhhh
Confidence            99999999999887653

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.94  E-value=1.2e-09  Score=82.90  Aligned_cols=94  Identities=26%  Similarity=0.274  Sum_probs=76.8

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCC
Q 027562           71 AKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  150 (222)
Q Consensus        71 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  150 (222)
                      .++..++.+|++.|+...++.+.-.|.+++.                  .|...+|+||.|+..|+.+++++|++.....
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~------------------~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~  565 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLET------------------KDYDDRTALHVAAAEGHVEVVKFLLNACKVD  565 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccc------------------cccccchhheeecccCceeHHHHHHHHHcCC
Confidence            3566678888888888888888888877666                  7888888999998889999999988865544


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC
Q 027562          151 PYSANNDGKTPLYMAADYRSSDMVLALLENST  182 (222)
Q Consensus       151 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~  182 (222)
                      +...|++|+|||.-|...++.+++++|-+.-.
T Consensus       566 ~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  566 PDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             CChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            77888889999988888888888888876543

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.93  E-value=1.4e-09  Score=84.38  Aligned_cols=122  Identities=20%  Similarity=0.248  Sum_probs=107.3

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ..|..|+..+|+=.++.....|.+....+.+-.+.||+  |+..|+-+++++++.+.  +...++..++.|.|+||.|+.
T Consensus       868 eeil~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~--a~~tg~~eivkyildh~--p~elld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  868 EEILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHY--AAKTGNGEIVKYILDHG--PSELLDMADETGETALHKAAC  943 (1004)
T ss_pred             HHHHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHH--HHhcCChHHHHHHHhcC--CHHHHHHHhhhhhHHHHHHHH
Confidence            34778899999888888888888888888899999999  99999999999998862  344567788999999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      .++..+.++|++.|+.+--                  .|..|.||-..|-..|+.+..-+|-+.
T Consensus       944 ~~~r~vc~~lvdagasl~k------------------td~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRK------------------TDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hcchHHHHHHHhcchhhee------------------cccCCCChHHHHHhcCCchHHHHHhhh
Confidence            9999999999999998765                  789999999999999999999998754

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.89  E-value=1.5e-09  Score=82.33  Aligned_cols=87  Identities=28%  Similarity=0.377  Sum_probs=80.6

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      ++++|++.||+..++++.-.|.|....|++.+|+||+  |+..|+.+++++|++.   ...+.+..|..|+|||.-|...
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHv--AAaEG~v~v~kfl~~~---~kv~~~~kDRw~rtPlDdA~~F  583 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHV--AAAEGHVEVVKFLLNA---CKVDPDPKDRWGRTPLDDAKHF  583 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhcccccccccccchhhee--ecccCceeHHHHHHHH---HcCCCChhhccCCCcchHhHhc
Confidence            5789999999999999999999999999999999999  9999999999999885   5566788999999999999999


Q ss_pred             CCHHHHHHHHHh
Q 027562           84 GHSDIVRVLVER   95 (222)
Q Consensus        84 ~~~~~~~~Ll~~   95 (222)
                      ++.+++++|-+.
T Consensus       584 ~h~~v~k~L~~~  595 (622)
T KOG0506|consen  584 KHKEVVKLLEEA  595 (622)
T ss_pred             CcHHHHHHHHHH
Confidence            999999999765

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.86  E-value=6.8e-09  Score=84.16  Aligned_cols=91  Identities=25%  Similarity=0.216  Sum_probs=46.2

Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC----------ccCCC
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA----------SHEGP  189 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~----------~~~~~  189 (222)
                      .|.-|+++++.|+.+.+.+++++|+++....        ..+|..|+..+..+.|+.++.+...-          ...-.
T Consensus        58 ~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft  129 (822)
T KOG3609|consen   58 RDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFT  129 (822)
T ss_pred             cChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCC
Confidence            4555555555555555555555555443331        12444555555555555555432111          11122


Q ss_pred             CCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      -+.||+.+|+..+++|+++.||.+|+.+-
T Consensus       130 ~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  130 PDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             CCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            35566666666666666666666666554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.80  E-value=2e-08  Score=77.44  Aligned_cols=88  Identities=22%  Similarity=0.182  Sum_probs=71.1

Q ss_pred             hHhHHHHhcCChHHHHHHH-hcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc
Q 027562          126 TALHEAVCHQNVDVVEILT-KEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       126 ~~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  204 (222)
                      .|+|+++...+.+-+...+ ..-.......|..|+||||.|+..|+.+.++.|+..|+++..+|..|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            4689988877766555433 222222456788899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhc
Q 027562          205 GKFSYTLSV  213 (222)
Q Consensus       205 ~~~~~Ll~~  213 (222)
                      +++..++.|
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777765

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.76  E-value=4.8e-08  Score=74.83  Aligned_cols=93  Identities=22%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             cccCCChH------HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHH
Q 027562           69 VNAKGETP------LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEI  142 (222)
Q Consensus        69 ~~~~~~t~------L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  142 (222)
                      +|.+|.+.      ||..++.|+.++.-.|+..|++.++-                 .-..|.||||.|++.|+..-++.
T Consensus       123 rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~-----------------hpekg~TpLHvAAk~Gq~~Q~El  185 (669)
T KOG0818|consen  123 RDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFF-----------------HPEKGNTPLHVAAKAGQILQAEL  185 (669)
T ss_pred             CCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCC-----------------CcccCCchhHHHHhccchhhhhH
Confidence            45555553      89999999999999999999998872                 34569999999999999999999


Q ss_pred             HHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh
Q 027562          143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE  179 (222)
Q Consensus       143 Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  179 (222)
                      |+-.|+| +...|..|+||+.+|-..|+-++.+.|++
T Consensus       186 L~vYGAD-~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  186 LAVYGAD-PGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HhhccCC-CCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            9999999 77999999999999999999877666655

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.75  E-value=3.5e-08  Score=76.83  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=80.4

Q ss_pred             HhHHHHhcCChHHHHHHHhcCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhcc
Q 027562          127 ALHEAVCHQNVDVVEILTKEDPDY---PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY  203 (222)
Q Consensus       127 ~l~~a~~~~~~~~~~~Ll~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  203 (222)
                      .|..|+...++..+-.|+.+|...   ....+..|+|+||.|+..++..+.++|+=+|+|+..+|..|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            366677888888999999987641   23445678999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhcCCccc
Q 027562          204 FGKFSYTLSVGISIL  218 (222)
Q Consensus       204 ~~~~~~Ll~~ga~~~  218 (222)
                      -+++..|+++|...+
T Consensus       707 qec~d~llq~gcp~e  721 (749)
T KOG0705|consen  707 QECIDVLLQYGCPDE  721 (749)
T ss_pred             HHHHHHHHHcCCCcc
Confidence            999999999998653

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.65  E-value=1.2e-07  Score=73.89  Aligned_cols=93  Identities=20%  Similarity=0.179  Sum_probs=76.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC
Q 027562           77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  156 (222)
Q Consensus        77 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (222)
                      |--|+...+...+-.|+.+|.....              .-...+-.|+|+||+||..|++.+.++|+-.|++ ....|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~--------------~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d-v~~rda  692 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEV--------------NETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD-VMARDA  692 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhh--------------hccccCCCCcchhhhhhhhcchhHHHHHHHhCcc-ceeccc
Confidence            5556667777788888888754332              0112456689999999999999999999999999 779999


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                      +|+|+|.||-+.+.-+|++.|+++|...
T Consensus       693 ~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  693 HGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            9999999999999999999999999654

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.56  E-value=4.2e-07  Score=67.66  Aligned_cols=73  Identities=27%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             chHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHH
Q 027562          125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA  198 (222)
Q Consensus       125 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  198 (222)
                      .--+..||+.|+++.++.|++.|.. .|..|.+..+||.+|+.+|+.+++++|+++||--+....+|..++.-|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn-VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~Yga  109 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN-VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGA  109 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC-cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhh
Confidence            4458899999999999999999999 778999999999999999999999999999987666555666554333

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.56  E-value=1.6e-07  Score=78.03  Aligned_cols=89  Identities=22%  Similarity=0.244  Sum_probs=81.2

Q ss_pred             ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHh
Q 027562          122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK  201 (222)
Q Consensus       122 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~  201 (222)
                      ..|.+++|.|+..+..-++++|++.|++ .+..|..|++|+|.+...|+......++++|++.+..+.+|.+|+++|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            4578999999999999999999999999 779999999999999999999999999999999999999999999999887


Q ss_pred             ccchhHHHHH
Q 027562          202 SYFGKFSYTL  211 (222)
Q Consensus       202 ~~~~~~~~Ll  211 (222)
                      .+.+++-++.
T Consensus       733 ~~~d~~~l~~  742 (785)
T KOG0521|consen  733 ANADIVLLLR  742 (785)
T ss_pred             ccccHHHHHh
Confidence            7776665543

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.55  E-value=2.3e-07  Score=71.76  Aligned_cols=64  Identities=30%  Similarity=0.510  Sum_probs=38.1

Q ss_pred             ccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHH
Q 027562           64 LLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        64 ~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  143 (222)
                      ..++..|..|.||||+|+..|+.+.++.|+..|++...                  ++..|.+|+|.|+..|+-+++..+
T Consensus        46 ~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~------------------kN~~gWs~L~EAv~~g~~q~i~~v  107 (560)
T KOG0522|consen   46 LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI------------------KNNEGWSPLHEAVSTGNEQIITEV  107 (560)
T ss_pred             ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc------------------cccccccHHHHHHHcCCHHHHHHH
Confidence            34555566666666666666666666666666655443                  556666666666666666555555


Q ss_pred             Hh
Q 027562          144 TK  145 (222)
Q Consensus       144 l~  145 (222)
                      +.
T Consensus       108 lr  109 (560)
T KOG0522|consen  108 LR  109 (560)
T ss_pred             HH
Confidence            54

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.47  E-value=5.3e-07  Score=73.60  Aligned_cols=128  Identities=12%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             HHHHHHHcCCchhHHHHHHHH----HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHH
Q 027562            4 NLFKAAAAGNLEPFKDIAREV----IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHV   79 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~----~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~   79 (222)
                      ....|+++||...|+..++..    .+.|..|.-|.++|+.  |..+.+.|+.++|++.           +..-..+|-.
T Consensus        28 ~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~i--ai~nenle~~eLLl~~-----------~~~~gdALL~   94 (822)
T KOG3609|consen   28 GFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHI--AIDNENLELQELLLDT-----------SSEEGDALLL   94 (822)
T ss_pred             HHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceec--ccccccHHHHHHHhcC-----------ccccchHHHH
Confidence            356899999999999999953    4456889999999999  9999999999999773           1111568889


Q ss_pred             HHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCC
Q 027562           80 AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  152 (222)
Q Consensus        80 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  152 (222)
                      |+..|..+.++.++.+-........        ....-...-..+-||+..||-.++.|+++.|+.+|..++.
T Consensus        95 aI~~~~v~~VE~ll~~~~~~~~~~~--------~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   95 AIAVGSVPLVELLLVHFVDAPYLER--------SGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHhcccccchhcc--------ccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            9999999999999987443222111        1111112345578999999999999999999999887554

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.44  E-value=4.5e-07  Score=67.51  Aligned_cols=58  Identities=17%  Similarity=0.054  Sum_probs=54.9

Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          160 TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       160 t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      --|..|+..|..+.++.|++.|.++|..|....+||.+|+..|+.+++|+||++||--
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            4578899999999999999999999999999999999999999999999999999853

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.37  E-value=6.3e-07  Score=74.59  Aligned_cols=88  Identities=31%  Similarity=0.447  Sum_probs=79.3

Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCC
Q 027562           71 AKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  150 (222)
Q Consensus        71 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  150 (222)
                      ..|.|+||.|+.+|..-..+.|++.|++++.                  .+..|++|+|.+...|....+..++++|++ 
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~------------------~d~~g~~plh~~~~~g~~~~~~~ll~~~a~-  714 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNA------------------LDSKGRTPLHHATASGHTSIACLLLKRGAD-  714 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchh------------------hhccCCCcchhhhhhcccchhhhhcccccc-
Confidence            3689999999999999999999999999877                  899999999999999999999999999999 


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 027562          151 PYSANNDGKTPLYMAADYRSSDMVLAL  177 (222)
Q Consensus       151 ~~~~~~~g~t~l~~a~~~~~~~~~~~L  177 (222)
                      ++..+..|.+|+.+|....+.+++-++
T Consensus       715 ~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  715 PNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             ccccCccCcchhhHHhhhccccHHHHH
Confidence            778899999999999877666665444

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.28  E-value=2.1e-06  Score=58.05  Aligned_cols=66  Identities=18%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             HhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 027562          116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       116 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  181 (222)
                      .++.+|..|.|+++.|+..|..+.+.+|+.+|+-.+...|..+.+.+.+|-+.|..+++..|.++-
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            355667777777777777777777777777774335566777777777777777777777776653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.17  E-value=6.8e-06  Score=55.60  Aligned_cols=65  Identities=25%  Similarity=0.165  Sum_probs=37.3

Q ss_pred             cccccccCCChHHHHHHHhCCHHHHHHHHHhh-hhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHH
Q 027562           65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVERA-KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        65 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  143 (222)
                      ++|.+|..|+|+++.|+..|..+.+.||+.+| +.+..                  .|..+.++...|-+.|..+++..|
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv------------------~d~ssldaaqlaek~g~~~fvh~l   65 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV------------------TDESSLDAAQLAEKGGAQAFVHSL   65 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc------------------cccccchHHHHHHhcChHHHHHHH
Confidence            34555666666666666666666666666665 33332                  455566666666666666666666


Q ss_pred             HhcC
Q 027562          144 TKED  147 (222)
Q Consensus       144 l~~~  147 (222)
                      .+..
T Consensus        66 fe~~   69 (223)
T KOG2384|consen   66 FEND   69 (223)
T ss_pred             HHHh
Confidence            5543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.10  E-value=5.2e-06  Score=69.41  Aligned_cols=128  Identities=20%  Similarity=0.161  Sum_probs=93.7

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHh-hhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHH
Q 027562           66 LLQVNAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILT  144 (222)
Q Consensus        66 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  144 (222)
                      .......|++.+|++...+..-.++.+++- |.....                  .+..|.-.+|.++ .+..+..-+++
T Consensus       567 ~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e------------------ld~d~qgV~hfca-~lg~ewA~ll~  627 (975)
T KOG0520|consen  567 SSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE------------------LDRDGQGVIHFCA-ALGYEWAFLPI  627 (975)
T ss_pred             cccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh------------------hcccCCChhhHhh-hcCCceeEEEE
Confidence            334456789999999999988888888775 333222                  4667777788754 44445444444


Q ss_pred             h-cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC------CccCCCCCccHHHHHHHhccchhHHHHHhc
Q 027562          145 K-EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS------ASHEGPNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       145 ~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      . .|.. .+.+|..|+||||+|+.+|+..++..|.+.|++      +......|.|+-..|...|+..+.-+|-+.
T Consensus       628 ~~~~~a-i~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  628 SADGVA-IDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             eecccc-cccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            3 4444 668899999999999999999999999987764      344455699999999988888887776554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.95  E-value=5.6e-06  Score=69.25  Aligned_cols=99  Identities=16%  Similarity=0.089  Sum_probs=79.8

Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHH
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA  198 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  198 (222)
                      ....|.+.+|.++..+....++.+++. |.. ....|..|.-.+|.++..+..-.+..+.-.|..++.+|..|+||||+|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~-~~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wA  648 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSG-DLELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWA  648 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccC-chhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchH
Confidence            455688899999999999999999985 443 446677777788886655544334444468999999999999999999


Q ss_pred             HHhccchhHHHHHhcCCcccc
Q 027562          199 AMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       199 ~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      ...|+..++..|++-|++..+
T Consensus       649 a~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  649 AFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             hhcCHHHHHHHHHHhcccccc
Confidence            999999999999999998764

>smart00248 ANK ankyrin repeats

Probab=97.86  E-value=2e-05  Score=36.35  Aligned_cols=28  Identities=32%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             CccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          191 GKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       191 g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      |.||+++|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5667777777777777777777766554

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.72  E-value=0.00032  Score=49.13  Aligned_cols=91  Identities=13%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             CchHhHHHHhcCChHHHHHHHhcCC----CCCCCCCCCCCCHHHHHHH--cCCHHHHHHHHhcC-CCCcc---CCCCCcc
Q 027562          124 KNTALHEAVCHQNVDVVEILTKEDP----DYPYSANNDGKTPLYMAAD--YRSSDMVLALLENS-TSASH---EGPNGKT  193 (222)
Q Consensus       124 ~~~~l~~a~~~~~~~~~~~Ll~~~~----~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~g-~~~~~---~~~~g~t  193 (222)
                      ..+++.++..++.-+++.+|++.-.    +....  ..+..-+.++..  ..+..+++.++++| ++++.   +-+.|.|
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~--~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdt  256 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM--EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDT  256 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc--CcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcch
Confidence            4567888888889999999998632    21111  112223444433  34567899999999 45553   4567999


Q ss_pred             HHHHHHHhccchhHHHHHhcCCc
Q 027562          194 ALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      .|.-|+++++.+++.+||++||-
T Consensus       257 MLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  257 MLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHhHHhcCcHHHHHHHHHcCcc
Confidence            99999999999999999999993

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.48  E-value=0.00018  Score=55.94  Aligned_cols=65  Identities=23%  Similarity=0.180  Sum_probs=53.7

Q ss_pred             CChHHHHHHHhcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          135 QNVDVVEILTKEDPDY-----PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       135 ~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                      .-...+++|.+++...     +...+..-.|+||+|+.++...++.+||+.|+|+..+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3467888888876553     2233444569999999999999999999999999999999999999887

>smart00248 ANK ankyrin repeats

Probab=97.44  E-value=0.00038  Score=31.74  Aligned_cols=27  Identities=33%  Similarity=0.550  Sum_probs=18.2

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          158 GKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                      |.||+|+|+..++.++++.|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456777777777777777777666654

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=97.07  E-value=0.0057  Score=41.69  Aligned_cols=138  Identities=15%  Similarity=0.048  Sum_probs=89.0

Q ss_pred             chhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHH
Q 027562           37 ILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM  116 (222)
Q Consensus        37 ~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  116 (222)
                      .|.-  |++.+..++++...+.+...       -...++-+..||+..+.++|+|+-+.   +                 
T Consensus        49 Ll~H--AVk~nmL~ILqkyke~L~~~-------~~~~q~LFElAC~~qkydiV~WI~qn---L-----------------   99 (192)
T PF03158_consen   49 LLYH--AVKYNMLSILQKYKEDLENE-------RYLNQELFELACEEQKYDIVKWIGQN---L-----------------   99 (192)
T ss_pred             HHHH--HHHcCcHHHHHHHHHHhhcc-------hhHHHHHHHHHHHHccccHHHHHhhc---c-----------------
Confidence            3445  77778777777766654421       12456778889999999999999442   1                 


Q ss_pred             hhhccccCchHhHHHHhcCChHHHH----HHHhcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCC
Q 027562          117 IRMTNKEKNTALHEAVCHQNVDVVE----ILTKEDPDY-PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG  191 (222)
Q Consensus       117 ~~~~~~~~~~~l~~a~~~~~~~~~~----~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  191 (222)
                         .-.+..+.+..|....+.++..    ++.+..... ....+.--..-|..|+..|....+...+++|.+++.     
T Consensus       100 ---~i~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~~-----  171 (192)
T PF03158_consen  100 ---HIYNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVDI-----  171 (192)
T ss_pred             ---CCCCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCcccH-----
Confidence               2233445566777777766532    222222110 000011112356778999999999888899988764     


Q ss_pred             ccHHHHHHHhccchhHHHHHh
Q 027562          192 KTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                       +.|..|+.+++..++.+++.
T Consensus       172 -~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 -IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -HHHHHHHHhhHHHHHHHhhc
Confidence             68999999999999988875

These proteins may be involved in promoting survival of infected macrophages [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.99  E-value=0.00076  Score=52.59  Aligned_cols=46  Identities=26%  Similarity=0.376  Sum_probs=41.5

Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA  166 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  166 (222)
                      .+....|+||+|+..|..+++.+|++.|+| +...|..|.||...+.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence            455578999999999999999999999988 7799999999999875

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.77  E-value=0.042  Score=37.63  Aligned_cols=143  Identities=12%  Similarity=0.072  Sum_probs=92.5

Q ss_pred             HHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            4 NLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         4 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      .+..|++.+-++++++.-+...+.   -...++.+-.  ||+..+.++++|+-+.+.         -.+-.+.+.+|...
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFEl--AC~~qkydiV~WI~qnL~---------i~~~~~iFdIA~~~  114 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE---RYLNQELFEL--ACEEQKYDIVKWIGQNLH---------IYNPEDIFDIAFAK  114 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHH--HHHHccccHHHHHhhccC---------CCCchhhhhhhhhc
Confidence            356788888888888876653321   1245566667  999999999999966322         23446677889888


Q ss_pred             CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 027562           84 GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY  163 (222)
Q Consensus        84 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  163 (222)
                      .+.+.  +.+.+..-.+.-...     +    .. -.+.--..-+..|+..|-..++...++.|.+..       .+.|.
T Consensus       115 kDlsL--yslGY~l~~~~~~~~-----~----~~-d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~~vls  175 (192)
T PF03158_consen  115 KDLSL--YSLGYKLLFNRMMSE-----H----NE-DPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------IIVLS  175 (192)
T ss_pred             cchhH--HHHHHHHHHhhcccc-----c----cc-CHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------HHHHH
Confidence            88776  222221111110000     0    00 001111235788999999999999999987722       17899


Q ss_pred             HHHHcCCHHHHHHHHh
Q 027562          164 MAADYRSSDMVLALLE  179 (222)
Q Consensus       164 ~a~~~~~~~~~~~Ll~  179 (222)
                      .|+.+++-.++.+++.
T Consensus       176 ~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  176 QAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHhhHHHHHHHhhc
Confidence            9999999999988763

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.68  E-value=0.11  Score=36.91  Aligned_cols=58  Identities=21%  Similarity=0.229  Sum_probs=44.2

Q ss_pred             HhHHHHhc--CChHHHHHHHhcCCCCCC---CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          127 ALHEAVCH--QNVDVVEILTKEDPDYPY---SANNDGKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       127 ~l~~a~~~--~~~~~~~~Ll~~~~~~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                      -+.++...  -+..++++++++|--.++   ..-+.|.|.|.-|.++++.+++.+|+++|+-.
T Consensus       218 dieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  218 DIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            44455443  356789999999854343   34557999999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.25  E-value=0.047  Score=31.97  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             chHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 027562          125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       125 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  180 (222)
                      ..-+..|+.+|+.|+++.+++.+..     +   ...+..|+..-+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            3457889999999999998865421     1   3578889999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.15  E-value=0.22  Score=29.09  Aligned_cols=48  Identities=21%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ...+..|+..|+.++++.+++.+.                         .....+..|+...+.+++++|++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-------------------------~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-------------------------PDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-------------------------cHHHHHHHHHHHhhHHHHHHHHHh
Confidence            345778888888888888876532                         113357788888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.18  E-value=0.94  Score=36.37  Aligned_cols=165  Identities=12%  Similarity=0.111  Sum_probs=81.5

Q ss_pred             HHHHHHcCCchhHHHHHH-HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            5 LFKAAAAGNLEPFKDIAR-EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         5 l~~A~~~g~~~~v~~ll~-~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      +..|+.+++.+.+..+++ ...-+......|.....+  .-+.|.+|..   +++.           .+..+-+.+|.+.
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~f--L~~~G~~e~A---L~~~-----------~D~~~rFeLAl~l  331 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARF--LEKKGYPELA---LQFV-----------TDPDHRFELALQL  331 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHH--HHHTT-HHHH---HHHS-----------S-HHHHHHHHHHC
T ss_pred             HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHH--HHHCCCHHHH---Hhhc-----------CChHHHhHHHHhc
Confidence            457888899888877776 222233334455555555  5555554443   2221           1224567788888


Q ss_pred             CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHH
Q 027562           84 GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY  163 (222)
Q Consensus        84 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~  163 (222)
                      |+.+.+..+.+...+..                      .....-..|...|+.++++.-..+..+.        ...+.
T Consensus       332 g~L~~A~~~a~~~~~~~----------------------~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~l  381 (443)
T PF04053_consen  332 GNLDIALEIAKELDDPE----------------------KWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLL  381 (443)
T ss_dssp             T-HHHHHHHCCCCSTHH----------------------HHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHH
T ss_pred             CCHHHHHHHHHhcCcHH----------------------HHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHH
Confidence            88887766654422111                      1122234566677787777777655441        12445


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc-hhHHHHHhcCCcccc
Q 027562          164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF-GKFSYTLSVGISILI  219 (222)
Q Consensus       164 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~-~~~~~Ll~~ga~~~~  219 (222)
                      .....|+.+-++.|.+.-..    ..+-..+++.+...|+. ++++.|++.|--+..
T Consensus       382 Ly~~~g~~~~L~kl~~~a~~----~~~~n~af~~~~~lgd~~~cv~lL~~~~~~~~A  434 (443)
T PF04053_consen  382 LYSSTGDREKLSKLAKIAEE----RGDINIAFQAALLLGDVEECVDLLIETGRLPEA  434 (443)
T ss_dssp             HHHHCT-HHHHHHHHHHHHH----TT-HHHHHHHHHHHT-HHHHHHHHHHTT-HHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH----ccCHHHHHHHHHHcCCHHHHHHHHHHcCCchHH
Confidence            56666776666666532110    11123356666666554 467777777755443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		9e-13
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-05
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		7e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		9e-07
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-06
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		1e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-06
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-06
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-06
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-06
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-06
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-06
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-05
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-04
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		2e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-05
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		4e-05
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-05
1uoh_A	226	Human Gankyrin Length = 226		6e-05
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		7e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		9e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		9e-05
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		9e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		1e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		2e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		5e-04

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 84/184 (45%), Gaps = 25/184 (13%)
Query: 29  LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDI 88
           L     +T LH+  R    E       +E  + C      +  KG TPLHVAAK+G   +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 89  VRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP 148
             +L+ER     H N   ++G+               T LH AV H N+D+V++L     
Sbjct: 162 AELLLERDA---HPNAAGKNGL---------------TPLHVAVHHNNLDIVKLLLPRG- 202
Query: 149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS 208
             P+S   +G TPL++AA     ++  +LL+   SA+ E   G T LH AA + +    +
Sbjct: 203 GSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA 262
Query: 209 YTLS 212
             LS
Sbjct: 263 LLLS 266

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 19/142 (13%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA+ GH ++V++L             LE+G       +   +K   T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------LEAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
            + +++VV++L +   D   + + +G+TPL++AA     ++V  LLE     + +  NG+
Sbjct: 44  RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGR 102
Query: 193 TALHAAAMKSYFGKFSYTLSVG 214
           T LH AA   +       L  G
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAG 124

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 76/155 (49%), Gaps = 26/155 (16%)
Query: 47  SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
           +EN +   V+++LE        VNA    G+TPLH+AA+ GH ++V++L+ +        
Sbjct: 12  AENGNKDRVKDLLENGA----DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
                            + +  T LH A  + + +VV++L  +  D P + ++DGKTPL+
Sbjct: 62  ------------DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
           +AA+    ++V  LL      +    +G+T L  A
Sbjct: 109 LAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLA 143

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
           +  ++ +  T LH A  + + +VV++L  +  D P + ++DGKTPL++AA+    ++V  
Sbjct: 30  VNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKL 88
Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
           LL      + +  +GKT LH AA   +       LS G
Sbjct: 89  LLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 126

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA  GH +IV VL++    +   N    +GI               T LH A 
Sbjct: 47  GYTPLHLAASNGHLEIVEVLLKNGADV---NASDLTGI---------------TPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              ++++VE+L K   D   + +NDG TPL++AA Y   ++V  LL++    + +   GK
Sbjct: 89  ATGHLEIVEVLLKHGADVN-AYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 71/149 (47%), Gaps = 17/149 (11%)
Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKL----------------LQHENEELESGIRTA 113
           +A+G T LH+AAK GH ++V+ L+   ++                 ++++ +L   + + 
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
              I + + E+N  LH A     VD+ EIL     D  ++ N  G +PL++AA     D 
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAARENRYDC 192
Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKS 202
           V+  L   +  + +   G+T L  A++ S
Sbjct: 193 VVLFLSRDSDVTLKNKEGETPLQCASLNS 221

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNA+   G TPLH+AA FGH +IV VL++    +   N +   G+              
Sbjct: 39  DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADV---NAKDSLGV-------------- 81
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T LH A    ++++VE+L K   D   S ++ G TPL++AA     ++V  LL+N    
Sbjct: 82  -TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAAKRGHLEIVEVLLKNGADV 139
Query: 185 SHEGPNGKTAL 195
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 22/131 (16%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNAK   G TPLH+AA+ GH +IV VL++                  A   +   +K+ 
Sbjct: 39  DVNAKDKDGYTPLHLAAREGHLEIVEVLLK------------------AGADVNAKDKDG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T LH A    ++++VE+L K   D   + + DG TPL++AA     ++V  LL+     
Sbjct: 81  YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 139
Query: 185 SHEGPNGKTAL 195
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 22/131 (16%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNA+   G+TPLH+AA  GH +IV V      LL+H  +            +   +K  
Sbjct: 39  DVNAEDDSGKTPLHLAAIKGHLEIVEV------LLKHGAD------------VNAADKMG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
           +T LH A  + ++++VE+L K   D   + +  G TPL++AAD    ++V  LL+     
Sbjct: 81  DTPLHLAALYGHLEIVEVLLKNGADVN-ATDTYGFTPLHLAADAGHLEIVEVLLKYGADV 139
Query: 185 SHEGPNGKTAL 195
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/123 (32%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA FGH +IV VL++    +   N +   G+               T LH A 
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLKNGADV---NADDSLGV---------------TPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              +++VVE+L K   D   + +N G TPL++AA+    ++V  LL++    + +   GK
Sbjct: 89  DRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 28/134 (20%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNA+   G+TPLH+AA+ GH +IV VL++                      +   +   
Sbjct: 39  DVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA------------------DVNALDFSG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANND---GKTPLYMAADYRSSDMVLALLENS 181
           +T LH A    ++++VE+L K    Y    N D   G TPL++AAD    ++V  LL+  
Sbjct: 81  STPLHLAAKRGHLEIVEVLLK----YGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYG 136
Query: 182 TSASHEGPNGKTAL 195
              + +   GKTA 
Sbjct: 137 ADVNAQDKFGKTAF 150

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 62/123 (50%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA  GH +IV VL      L+H  +            +  ++    T LH A 
Sbjct: 47  GTTPLHLAAYSGHLEIVEVL------LKHGAD------------VDASDVFGYTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              ++++VE+L K   D   + ++DG TPL++AA +   ++V  LL++    + +   GK
Sbjct: 89  YWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNAK   G TPLH+AA+ GH +IV VL             L++G       +   +K+ 
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 68
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T LH A    ++++VE+L K   D   + + DG TPL++AA     ++V  LL+     
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 185 SHEGPNGKT 193
           + +   GKT
Sbjct: 128 NAQDKFGKT 136

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 71/155 (45%), Gaps = 26/155 (16%)
Query: 47  SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
           +EN +   V++++E        VNA    G TPLH AAK GH +IV++L+ +        
Sbjct: 12  AENGNKDRVKDLIENGA----DVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
                        +   + +  T LH A    + ++V++L  +  D   + ++DG+TPL+
Sbjct: 62  ------------DVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADV-NAKDSDGRTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
            AA     ++V  L+      +    +G+T L  A
Sbjct: 109 YAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLA 143

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 22/129 (17%)
Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNAK   G TPLH+AA+ GH +IV VL             L++G       +   +K+ 
Sbjct: 27  DVNAKDKDGYTPLHLAAREGHLEIVEVL-------------LKAGAD-----VNAKDKDG 68
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T LH A    ++++VE+L K   D   + + DG TPL++AA     ++V  LL+     
Sbjct: 69  YTPLHLAAREGHLEIVEVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLKAGADV 127
Query: 185 SHEGPNGKT 193
           + +   GKT
Sbjct: 128 NAQDKFGKT 136

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 19/126 (15%)
Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           +A G TPLH+AA +GH +IV V      LL+H  +            +   +   +T LH
Sbjct: 44  DASGLTPLHLAATYGHLEIVEV------LLKHGAD------------VNAIDIXGSTPLH 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
            A    ++++VE+L K   D   + +  G TPL++AA     ++V  LL++    + +  
Sbjct: 86  LAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 190 NGKTAL 195
            GKTA 
Sbjct: 145 FGKTAF 150

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/125 (30%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           +A G TPLH+AA +GH +IV V      LL+H  +            +   +   +T LH
Sbjct: 44  DASGLTPLHLAATYGHLEIVEV------LLKHGAD------------VNAIDIMGSTPLH 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
            A    ++++VE+L K   D   + +  G TPL++AA     ++V  LL++    + +  
Sbjct: 86  LAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144
Query: 190 NGKTA 194
            GKTA
Sbjct: 145 FGKTA 149

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA  GH +IV VL+                       +   +    T LH A 
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGA------------------DVNAVDTNGTTPLHLAA 76
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              ++++VE+L K   D   + +  G TPLY+AA +   ++V  LL++    + +   GK
Sbjct: 77  SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGK 135
Query: 193 TAL 195
           TA 
Sbjct: 136 TAF 138

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 22/131 (16%)
Query: 68  QVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
            VNA   +G TPLH+AA  GH +IV V      LL+H  +            +   + + 
Sbjct: 39  DVNAHDDQGSTPLHLAAWIGHPEIVEV------LLKHGAD------------VNARDTDG 80
Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T LH A  + ++++VE+L K   D   + +  G TPL++AAD    ++V  LL++    
Sbjct: 81  WTPLHLAADNGHLEIVEVLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADV 139
Query: 185 SHEGPNGKTAL 195
           + +   GKTA 
Sbjct: 140 NAQDKFGKTAF 150

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/178 (26%), Positives = 82/178 (46%), Gaps = 32/178 (17%)
Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L +AA  GN +  KD+         +     T LH       +EN   + V+ ++ K   
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLH-----HAAENGHKEVVKLLISKGA- 61
Query: 65  LLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
               VNAK   G TPLH AA+ GH ++V++L+ +                     +   +
Sbjct: 62  ---DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA------------------DVNAKD 100
Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
            +  T LH A  + + +VV++L  +  D   S ++DG+TPL +A ++  ++ V+ LLE
Sbjct: 101 SDGRTPLHHAAENGHKEVVKLLISKGADVNTS-DSDGRTPLDLAREH-GNEEVVKLLE 156

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 41/155 (26%), Positives = 72/155 (46%), Gaps = 26/155 (16%)
Query: 47  SENASTKFVEEILEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
           +EN +   V+++LE         NA    G TPLH AA+ GH +IV++L+ +        
Sbjct: 12  AENGNKDRVKDLLENG----ADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA------ 61
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLY 163
                            + +  T LH A  + + ++V++L  +  D P + ++DG+TPL+
Sbjct: 62  ------------DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLH 108
Query: 164 MAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
            AA+    ++V  LL      +    +G+T L  A
Sbjct: 109 YAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLA 143

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 61/127 (48%), Gaps = 21/127 (16%)
Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           +A G TPLH+AA  GH +IV VL++                      +   +    T L 
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGA------------------DVNAVDHAGMTPLR 85
Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
            A    ++++VE+L K   D   +AN+ +G TPL++AA +   ++V  LL+N    + + 
Sbjct: 86  LAALFGHLEIVEVLLKNGAD--VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQD 143
Query: 189 PNGKTAL 195
             GKTA 
Sbjct: 144 KFGKTAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA +GH +IV VL++                      +   +   +T LH A 
Sbjct: 47  GWTPLHLAAYWGHLEIVEVLLKNGA------------------DVNAYDTLGSTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              ++++VE+L K   D     +N G TPL++AA+    ++V  LL+     + +   GK
Sbjct: 89  HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T LH A    ++++VE+L K   D   + +  G TPL++AA +   ++V  LL+N    +
Sbjct: 49  TPLHLAAYWGHLEIVEVLLKNGADVN-AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 186 HEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
            +  NG T LH AA + +       L  G  +
Sbjct: 108 AKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 78/177 (44%), Gaps = 27/177 (15%)
Query: 51  STKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN------- 103
            TK V+EIL+     + +V+ +G TPL++A      +I + L++R   +  +N       
Sbjct: 17  DTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY 76
Query: 104 ---------EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL---TKEDPDYP 151
                    E L   ++ A   +   N+    AL  A    ++D V++L    +ED D+ 
Sbjct: 77  LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ 136
Query: 152 YSANNDGKTPLYMAADYRSS-----DMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
              N+ G T L  A   R       D+V  L+EN    S +  +G+TA+  A  K Y
Sbjct: 137 ---NDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGY 190

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 19/107 (17%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AA+ GH ++V++L             LE+G       +   +K   T LH A 
Sbjct: 2   GRTPLHLAARNGHLEVVKLL-------------LEAGAD-----VNAKDKNGRTPLHLAA 43
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
            + +++VV++L +   D   + + +G+TPL++AA     ++V  LLE
Sbjct: 44  RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T LH A  + +++VV++L +   D   + + +G+TPL++AA     ++V  LLE     +
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 186 HEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
            +  NG+T LH AA   +       L  G
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           +G TPLH+A + G    V VL +           L S       +++ TN   +T LH A
Sbjct: 74  RGNTPLHLACEQGCLASVGVLTQSCT-----TPHLHS-------ILKATNYNGHTCLHLA 121
Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
             H  + +VE+L     D       +G+T L++A D ++ D+V  LL+
Sbjct: 122 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 169

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 19/116 (16%)
Query: 80  AAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
           AA+ G  D VR+L+                       +   +++ NT LH A  + ++++
Sbjct: 21  AARAGQDDEVRILMANGA------------------DVNANDRKGNTPLHLAADYDHLEI 62
Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL 195
           VE+L K   D   + +NDG TPL++AA +   ++V  LL++    + +   GKTA 
Sbjct: 63  VEVLLKHGADVN-AHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAF 117

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
           EEL+  I   + +   T+++  TALH A    + ++VE L +     P +  +D G +PL
Sbjct: 21  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 78
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
           ++AA     ++V ALL      +    NG T LH AA K+
Sbjct: 79  HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 118

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
           EEL+  I   + +   T+++  TALH A    + ++VE L +     P +  +D G +PL
Sbjct: 20  EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
           ++AA     ++V ALL      +    NG T LH AA K+
Sbjct: 78  HIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKN 117

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 18/110 (16%)
Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM---IRMTNKEKNTAL 128
           +G TPLH+A + G    V VL +                 T  H+   ++ TN   +T L
Sbjct: 77  RGNTPLHLACEQGCLASVGVLTQSC---------------TTPHLHSILKATNYNGHTCL 121
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
           H A  H  + +VE+L     D       +G+T L++A D ++ D+V  LL
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
           D  L +AA AG++E         +K+L T ++      VN R  E   ++         +
Sbjct: 11  DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 56
Query: 62  CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
             ++  LLQ    V+AK   G  PLH A  +GH ++  +LV+                  
Sbjct: 57  VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 101
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
              ++ + +  K T LHEA      ++ ++L +   D P   N DG TPL +  D
Sbjct: 102 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 152

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
           D  L +AA AG++E         +K+L T ++      VN R  E   ++         +
Sbjct: 9   DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 54
Query: 62  CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
             ++  LLQ    V+AK   G  PLH A  +GH ++  +LV+                  
Sbjct: 55  VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 99
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
              ++ + +  K T LHEA      ++ ++L +   D P   N DG TPL +  D
Sbjct: 100 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 150

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+AAK GH +IV VL++                      +   +    T LH A 
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGA------------------DVNAWDNYGATPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
            + ++++VE+L K   D   + + +G TPL++AA     ++V  LL+     + +   GK
Sbjct: 89  DNGHLEIVEVLLKHGADVN-AKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 42/175 (24%)
Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
           D  L +AA AG++E         +K+L T ++      VN R  E   ++         +
Sbjct: 13  DRQLLEAAKAGDVE--------TVKKLCTVQS------VNCRDIEGRQSTPLHFAAGYNR 58
Query: 62  CPLL--LLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
             ++  LLQ    V+AK   G  PLH A  +GH ++  +LV+                  
Sbjct: 59  VSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA--------------- 103
Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
              ++ + +  K T LHEA      ++ ++L +   D P   N DG TPL +  D
Sbjct: 104 ---VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD 154

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 22/164 (13%)
Query: 59  LEKCPLLLLQVNA---KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH 115
           L K P   L VN     G +PLHVAA  G +D++ +L++             +G R    
Sbjct: 69  LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGA---------NAGAR---- 115
Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
                N ++   LH A    +  VV+ L   +   P   +  G TPL  A      ++V 
Sbjct: 116 -----NADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVA 169
Query: 176 ALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI 219
            LL++  S +     G TALH A ++ +       L  G S+ +
Sbjct: 170 LLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV 213

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 19/127 (14%)
Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           V+  G TPLH+AA  GH +IV V      LL+H  +            +   +    T L
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEV------LLKHGAD------------VDAADVYGFTPL 84
Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A    ++++VE+L K   D   + +  G TPL++AAD    ++V  LL+     + + 
Sbjct: 85  HLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQD 143
Query: 189 PNGKTAL 195
             GKTA 
Sbjct: 144 KFGKTAF 150

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 61/143 (42%), Gaps = 29/143 (20%)
Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNK--EKN 125
           Q  A GET LH+AA + + +   VL+E A  L  E                MT++  E  
Sbjct: 32  QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE---------------PMTSELYEGQ 76
Query: 126 TALHEAVCHQNVDVVEILTKEDPDY------------PYSANNDGKTPLYMAADYRSSDM 173
           TALH AV +QNV++V  L                   P++    G+ PL  AA   S ++
Sbjct: 77  TALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Query: 174 VLALLENSTSASHEGPNGKTALH 196
           V  L+E+      +   G T LH
Sbjct: 137 VRLLIEHGADIRAQDSLGNTVLH 159

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 19/123 (15%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G TPLH+    GH +I+ VL++ A                    +  ++K   T LH A 
Sbjct: 47  GITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSGWTPLHLAA 88
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
              ++++VE+L K   D   + +  G TPL++AA+    ++V  LL+     + +   GK
Sbjct: 89  YRGHLEIVEVLLKYGADVN-AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGK 147
Query: 193 TAL 195
           TA 
Sbjct: 148 TAF 150

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
           +EL+  I   + +   T+++  TALH A    + ++VE L +     P +  +D G +PL
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
           ++AA     ++V ALL      +    NG T LH AA K+
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-GKTPL 162
           +EL+  I   + +   T+++  TALH A    + ++VE L +     P +  +D G +PL
Sbjct: 20  DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPL 77
Query: 163 YMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
           ++AA     ++V ALL      +    NG T LH AA K+
Sbjct: 78  HIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN 117

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 59/130 (45%), Gaps = 19/130 (14%)
Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G+TPLH+A   G+   V  LV    L Q    EL+           + N  + T LH AV
Sbjct: 9   GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAV 54
Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE----G 188
                 VV +L       P + +  G+T  ++A ++RS   + ALL+++   + +     
Sbjct: 55  ITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 189 PNGKTALHAA 198
            +G TALH A
Sbjct: 114 YDGLTALHVA 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-21
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-22
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-18
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-08
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-20
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-19
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-20
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-20
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-19
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-19
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	7e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-19
2rfa_A	232	Transient receptor potential cation channel subfa	3e-18
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-18
2pnn_A	273	Transient receptor potential cation channel subfa	2e-17
2pnn_A	273	Transient receptor potential cation channel subfa	1e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-18
2etb_A	256	Transient receptor potential cation channel subfam	3e-17
2etb_A	256	Transient receptor potential cation channel subfam	1e-07
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-18
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-18
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-18
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-17
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-09
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-16
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	6e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	8e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-15
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-15
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	8e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-04
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-10
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-04

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.5 bits (223), Expect = 4e-22
 Identities = 37/192 (19%), Positives = 65/192 (33%), Gaps = 54/192 (28%)

Query: 31  AKTKN--TILHVNIRSKESENASTKFVEEILEKCPLLLLQ---VNAK---GETPLHVAAK 82
             T++  + LH+ I      +       E++     +      +N +    +TPLH+A  
Sbjct: 3   QLTEDGDSFLHLAII-----HEEKALTMEVIR---QVKGDLAFLNFQNNLQQTPLHLAVI 54

Query: 83  FGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVE 141
               +I   L+                          + +   NT LH A     +  V 
Sbjct: 55  TNQPEIAEALLGAGCD-------------------PELRDFRGNTPLHLACEQGCLASVG 95

Query: 142 ILTKEDPDYPYSA-----NNDGKTPLYMAADYRSSDMVLALLENSTSASH-------EGP 189
           +LT+        +     N +G T L++A+ +    +V  L+      S        E  
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV------SLGADVNAQEPC 149

Query: 190 NGKTALHAAAMK 201
           NG+TALH A   
Sbjct: 150 NGRTALHLAVDL 161

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.2 bits (217), Expect = 3e-21
 Identities = 43/195 (22%), Positives = 66/195 (33%), Gaps = 38/195 (19%)

Query: 23  EVIKRLL------TAKTK--NTILHVNIRSKESENASTKFVEEILEKC--PLLLLQVNAK 72
           E+ + LL        +    NT LH+       E      V  + + C  P L   + A 
Sbjct: 59  EIAEALLGAGCDPELRDFRGNTPLHL-----ACEQGCLASVGVLTQSCTTPHLHSILKAT 113

Query: 73  ---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
              G T LH+A+  G+  IV +LV   A +    N +                    TAL
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADV----NAQ--------------EPCNGRTAL 155

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H AV  QN D+V +L K   D        G +P  +     S+ +   L + +       
Sbjct: 156 HLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

Query: 189 PNGKTALHAAAMKSY 203
           P  +          +
Sbjct: 215 PESEDEESYDTESEF 229

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 27/85 (31%)

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHM 116
           LLL+    VN     G +P  +      + I + L +   + LQ                
Sbjct: 169 LLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ---------------- 212

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVE 141
                 E           +  +  E
Sbjct: 213 ---MLPESEDEESYDTESEFTEFTE 234

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 91.5 bits (228), Expect = 5e-22
 Identities = 20/205 (9%), Positives = 58/205 (28%), Gaps = 29/205 (14%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE--------SENASTKFVE 56
           L +A    N E         +  ++      + L ++  +K+                  
Sbjct: 177 LMRAMEFRNRE--------ALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 57  EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
             +E        VN +      PL+++ +     + + L+++  +   +     +G    
Sbjct: 229 RFVEMGI----DVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG---- 280

Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
              +          +  A      +V+++L ++  +    + N G           +  +
Sbjct: 281 -TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAV 338

Query: 174 VLALLENSTSASHEGPNGKTALHAA 198
               L  S        +   +   +
Sbjct: 339 KRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.1 bits (214), Expect = 5e-20
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 53/218 (24%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKN--TILHVNIRSKESENASTKFVEEILEKC 62
                     E        V +     K     T LH  +          + ++      
Sbjct: 115 ESLLNECDERE--------VNEIGSHVKHCKGQTALHWCVGLG---PEYLEMIK------ 157

Query: 63  PLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM 116
            +L+       AK    ETPL  A +F + + + ++++                      
Sbjct: 158 -ILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLR------------- 203

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
           +   NK+ N+ LH A+     DV     +   D     +N+   PLY++       +   
Sbjct: 204 LDYANKQGNSHLHWAILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKE 262

Query: 177 LLE-------------NSTSASHEGPNGKTALHAAAMK 201
           LL+             N T+   +       + AAA  
Sbjct: 263 LLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.6 bits (192), Expect = 5e-17
 Identities = 38/238 (15%), Positives = 67/238 (28%), Gaps = 55/238 (23%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN--TILHVNIRSKESENASTKFVE 56
           L      G          E+IK L+      TAK K   T L         E  + + ++
Sbjct: 142 LHWCVGLGPE------YLEMIKILVQLGASPTAKDKADETPLMR-----AMEFRNREALD 190

Query: 57  EILEKCPLLL-LQVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIR 111
            +++  P    L+++     G + LH A      D+    VE    +    N E      
Sbjct: 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDV----NME------ 240

Query: 112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEIL--------TKEDPDY----PYSANNDGK 159
                    + E    L+ +V    V + + L         +  P +             
Sbjct: 241 ---------DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWL 291

Query: 160 TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
             +  AAD    +++  L E           G         K+        L+    +
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPV 349

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 7e-16
 Identities = 25/145 (17%), Positives = 40/145 (27%), Gaps = 42/145 (28%)

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHM 116
            L++       +   G T LH+A KFG  D  + L                         
Sbjct: 38  RLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH------------------ 79

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
              +       +H AV     D+V  L +        A   G+ P  +  +    ++   
Sbjct: 80  ---SLWHGQKPIHLAVMANKTDLVVALVE-------GAKERGQMPESLLNECDEREVNEI 129

Query: 177 LLENSTSASHEGPNGKTALHAAAMK 201
                         G+TALH     
Sbjct: 130 GSHVKHC------KGQTALHWCVGL 148

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
              ++ E    +H A      D V  L +     P   N  G T L++A  +   D    
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVS-PTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 177 LLENSTSASHEGPNGKTALHAAAMK 201
           L        H   +G+  +H A M 
Sbjct: 72  LASV--GEVHSLWHGQKPIHLAVMA 94

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.4 bits (228), Expect = 1e-21
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 55/212 (25%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL--------TAKTKNTILHVNIRSKESENASTKFVE 56
           L  A    NL+        ++K LL         A    T LH+         A+ +   
Sbjct: 183 LHVAVHHNNLD--------IVKLLLPRGGSPHSPAWNGYTPLHI---------AAKQNQV 225

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           E+      LL      NA+   G TPLH+AA+ GH+++V +L+ + A             
Sbjct: 226 EVAR---SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN------------ 270

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                    + NK   T LH      +V V ++L K       +    G TPL++A+ Y 
Sbjct: 271 -------GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYG 322

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           +  +V  LL++    + +   G + LH AA +
Sbjct: 323 NIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.5 bits (223), Expect = 4e-21
 Identities = 44/150 (29%), Positives = 67/150 (44%), Gaps = 27/150 (18%)

Query: 59  LEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIR 111
           L     LL +    N      ETPLH+AA+ GH+++ + L++  AK              
Sbjct: 27  LPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-------------- 72

Query: 112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS 171
                +    K+  T LH A    + ++V++L + + + P  A   G TPL++AA     
Sbjct: 73  -----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHV 126

Query: 172 DMVLALLENSTSASHEGPNGKTALHAAAMK 201
           + VLALLE   S +     G T LH AA  
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKY 156

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 87.5 bits (218), Expect = 2e-20
 Identities = 59/213 (27%), Positives = 85/213 (39%), Gaps = 57/213 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA  G+          ++K LL         T    T LH+         A+ +   
Sbjct: 84  LHCAARIGHTN--------MVKLLLENNANPNLATTAGHTPLHI---------AAREGHV 126

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
           E +      LL+           G TPLHVAAK+G   +  +L+ER A            
Sbjct: 127 ETVL----ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH----------- 171

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                        K   T LH AV H N+D+V++L       P+S   +G TPL++AA  
Sbjct: 172 --------PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAKQ 222

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
              ++  +LL+   SA+ E   G T LH AA +
Sbjct: 223 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQE 255

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 86.4 bits (215), Expect = 6e-20
 Identities = 53/213 (24%), Positives = 84/213 (39%), Gaps = 53/213 (24%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA    +E        V + LL       A++    T LH+         A+ +   
Sbjct: 216 LHIAAKQNQVE--------VARSLLQYGGSANAESVQGVTPLHL---------AAQEGHA 258

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
           E++    LLL +    N     G TPLH+ A+ GH  +  VL             ++ G+
Sbjct: 259 EMVA---LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL-------------IKHGV 302

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS 170
                 +  T +   T LH A  + N+ +V+ L +   D   +    G +PL+ AA    
Sbjct: 303 M-----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLHQAAQQGH 356

Query: 171 SDMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
           +D+V  LL+N  S +    +G T L  A    Y
Sbjct: 357 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 389

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 81.8 bits (203), Expect = 2e-18
 Identities = 39/209 (18%), Positives = 75/209 (35%), Gaps = 52/209 (24%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA  G+ E        ++  LL+         K+  T LH+      ++       +
Sbjct: 249 LHLAAQEGHAE--------MVALLLSKQANGNLGNKSGLTPLHL-----VAQEGHVPVAD 295

Query: 57  EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRT 112
            +++        V+A    G TPLHVA+ +G+  +V+ L++  A                
Sbjct: 296 VLIKHGV----MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD--------------- 336

Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
               +    K   + LH+A    + D+V +L K     P   ++DG TPL +A       
Sbjct: 337 ----VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTTPLAIAKRLGYIS 391

Query: 173 MV---LALLENSTSASHEGPNGKTALHAA 198
           +      + + ++       +  +     
Sbjct: 392 VTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 2e-21
 Identities = 32/150 (21%), Positives = 52/150 (34%), Gaps = 27/150 (18%)

Query: 59  LEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIR 111
           +      + Q   +N     G TPL  AA  G   +V  L++  A               
Sbjct: 16  MLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-------------- 61

Query: 112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS 171
                 ++  K + +AL  A      D+V++L     D     + +G TPL  A      
Sbjct: 62  -----PQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHV 115

Query: 172 DMVLALLENSTSASHEGPNGKTALHAAAMK 201
             V  LLE+    + E  +G  ++  A   
Sbjct: 116 KCVKMLLESGADPTIETDSGYNSMDLAVAL 145

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 79.7 bits (198), Expect = 5e-19
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
               +H  A  G    +   +E+   +    N                T++E  T L  A
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVI----NH---------------TDEEGFTPLMWA 43

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
             H  + VVE L +   D P       ++ L +A     +D+V  LL+     +    NG
Sbjct: 44  AAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNG 102

Query: 192 KTALHAAAMK 201
            T L  A   
Sbjct: 103 GTPLLYAVHG 112

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 74.0 bits (183), Expect = 6e-17
 Identities = 31/192 (16%), Positives = 60/192 (31%), Gaps = 57/192 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           + + AA G +          +   +          +   T L           A+     
Sbjct: 7   VHQLAAQGEML--------YLATRIEQENVINHTDEEGFTPLMW---------AAAHGQI 49

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
            ++E     LLQ            E+ L +A   G++DIV++L++    +    NE    
Sbjct: 50  AVVE----FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDV----NE---- 97

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                       +    T L  AV   +V  V++L +   D P    + G   + +A   
Sbjct: 98  -----------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVAL 145

Query: 169 RSSDMVLALLEN 180
               +   +  +
Sbjct: 146 GYRSVQQVIESH 157

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 38.1 bits (90), Expect = 7e-04
 Identities = 8/45 (17%), Positives = 13/45 (28%)

Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
                ++  A       +   +E     +H    G T L  AA  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH 46

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 85.9 bits (214), Expect = 2e-21
 Identities = 37/137 (27%), Positives = 51/137 (37%), Gaps = 24/137 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VN     G TPL  A+ FG  + VR L+E  A                      +  KE+
Sbjct: 29  VNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-------------------PHILAKER 69

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            +AL  A      D+V +L + D D     + +G TPL  A        V ALL      
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADL 128

Query: 185 SHEGPNGKTALHAAAMK 201
           + E  +G T +  A   
Sbjct: 129 TTEADSGYTPMDLAVAL 145

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.1 bits (191), Expect = 5e-18
 Identities = 36/198 (18%), Positives = 65/198 (32%), Gaps = 42/198 (21%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKR---LLTAKTKN--TILHVNIRSKESENASTKFVEEIL 59
           + + AA G L+      +E +++   L+    +   T L        S     + V  +L
Sbjct: 6   IHQLAAQGELD----QLKEHLRKGDNLVNKPDERGFTPLIW-----ASAFGEIETVRFLL 56

Query: 60  EKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARH 115
           E         +      E+ L +A+  G++DIV +L+ER                     
Sbjct: 57  EWGA----DPHILAKERESALSLASTGGYTDIVGLLLERDVD------------------ 94

Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
            I + +    T L  AV   +V  VE L     D   +  + G TP+ +A       +  
Sbjct: 95  -INIYDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYRKVQQ 152

Query: 176 ALLENSTSASHEGPNGKT 193
            +  +             
Sbjct: 153 VIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.5 bits (187), Expect = 2e-17
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
               +H  A  G  D ++  + +        N+                ++   T L  A
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGD---NLVNK---------------PDERGFTPLIWA 43

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
                ++ V  L +   D P+    + ++ L +A+    +D+V  LLE     +    NG
Sbjct: 44  SAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNG 102

Query: 192 KTALHAAAMK 201
            T L  A   
Sbjct: 103 GTPLLYAVRG 112

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.2 bits (155), Expect = 8e-13
 Identities = 33/173 (19%), Positives = 52/173 (30%), Gaps = 57/173 (32%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN--TILHVNIRSKESENASTKFVE 56
           L  A+A G +E         ++ LL          K   + L +         AST    
Sbjct: 40  LIWASAFGEIE--------TVRFLLEWGADPHILAKERESALSL---------ASTGGYT 82

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
           +I+     LLL+    +N     G TPL  A +  H   V  L+ R A            
Sbjct: 83  DIVG----LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----------- 127

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
                   +        T +  AV      V +++        + +N     P
Sbjct: 128 --------LTTEADSGYTPMDLAVALGYRKVQQVIENHILK-LFQSNLVPADP 171

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 87.2 bits (217), Expect = 6e-21
 Identities = 40/217 (18%), Positives = 63/217 (29%), Gaps = 50/217 (23%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL--------TAKTKNTILHVNIRSKESE-----NAS 51
           L  A                   LL         A         +     S      ++ 
Sbjct: 82  LHLACRVRAHT--------CACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 52  TKFVEEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENE 104
                E              + A+   G TPLHVA     +++VR+L +  A L    N+
Sbjct: 134 PNPENEEEP---RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL----NK 186

Query: 105 ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYM 164
                                T LH AV  Q   V+E+L K   D P +    G+TPL  
Sbjct: 187 P--------------EPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGS 231

Query: 165 AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           A    +  +   L  +      +G +  +   ++   
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 77.6 bits (192), Expect = 2e-17
 Identities = 27/131 (20%), Positives = 38/131 (29%), Gaps = 16/131 (12%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           V   G+T LH+A    H   +  L             L          + + N    TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFL-------------LGFSAGHEY--LDLQNDLGQTAL 49

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A        VE L          A   G T L++A   R+      LL+   S   + 
Sbjct: 50  HLAAILGEASTVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 189 PNGKTALHAAA 199
            +         
Sbjct: 109 SDTYLTQSQDC 119

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 30/173 (17%), Positives = 48/173 (27%), Gaps = 48/173 (27%)

Query: 23  EVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVEEILEKCPLLLLQ---VNA 71
           E   R         A+  +  T LHV         A      E++    LL      +N 
Sbjct: 139 EEEPRDEDWRLQLEAENYDGHTPLHV---------AVIHKDAEMVR---LLRDAGADLNK 186

Query: 72  K----GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNT 126
                G TPLH+A +   + ++ +L++  A                             T
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADP----TA---------------RMYGGRT 227

Query: 127 ALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
            L  A+   N  +  +L             D  +P   +     SD      E
Sbjct: 228 PLGSALLRPNPILARLLRAHGAP-EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 3e-13
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--SANNDGKTPLYMAADYRSSDMVLAL 177
             ++ +TALH AV HQ+   ++ L      + Y    N+ G+T L++AA    +  V  L
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

Query: 178 LENSTSASHEGPNGKTALHAAAMK 201
                        G TALH A   
Sbjct: 65  YAAGAGVLVAERGGHTALHLACRV 88

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 55/159 (34%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN---TILHVNIRSKESENASTKFV 55
           L  A    + E        +++ L                T LH+         A     
Sbjct: 162 LHVAVIHKDAE--------MVRLLRDAGADLNKPEPTCGRTPLHL---------AVEAQA 204

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
             +LE   LLL       A+   G TPL  A    +  + R+L    A            
Sbjct: 205 ASVLE---LLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP----------- 250

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED 147
                         +K +    +    + D  +   + D
Sbjct: 251 --------EPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 85.2 bits (212), Expect = 6e-21
 Identities = 33/149 (22%), Positives = 50/149 (33%), Gaps = 19/149 (12%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           V ++ ETP   AA+      +  L+E                      +   ++   TAL
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 80

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
                  +   V +L +   D  +     G T L+MAA Y   ++V AL+E       E 
Sbjct: 81  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 140

Query: 189 PNGKTALHAAAMKSYFGKFSYTLSVGISI 217
             G TAL  A            +  G  I
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQFGRRI 169

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.0 bits (209), Expect = 2e-20
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 22/136 (16%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
           +N     G +PLH A + G S +V +L+ R             G R     I + N+  +
Sbjct: 32  LNQGDDHGFSPLHWACREGRSAVVEMLIMR-------------GAR-----INVMNRGDD 73

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T LH A  H + D+V+ L +   D   + N  G  PL+ A  +    +   L+ N    S
Sbjct: 74  TPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS 132

Query: 186 HEGPNGKTALHAAAMK 201
                G+  +  A   
Sbjct: 133 ICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 78.2 bits (194), Expect = 2e-18
 Identities = 26/129 (20%), Positives = 45/129 (34%), Gaps = 18/129 (13%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
               +    + G++  VR+ ++       EN+            +   +    + LH A 
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLD-----NTEND------------LNQGDDHGFSPLHWAC 47

Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
                 VVE+L           N    TPL++AA +   D+V  LL+     +    +G 
Sbjct: 48  REGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106

Query: 193 TALHAAAMK 201
             LH A   
Sbjct: 107 VPLHYACFW 115

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.9 bits (188), Expect = 2e-17
 Identities = 39/214 (18%), Positives = 62/214 (28%), Gaps = 64/214 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT-------AKTKN--TILHVNIRSKESENASTKFV 55
           +F     GN           ++  L            +  + LH            +  V
Sbjct: 9   IFTQCREGNAV--------AVRLWLDNTENDLNQGDDHGFSPLHW-----ACREGRSAVV 55

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
           E       +L+++   +N      +TPLH+AA  GH DIV+ L++  A +    N     
Sbjct: 56  E-------MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI----NA---- 100

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                       N+  N  LH A       V E L           N  G+ P+  A   
Sbjct: 101 -----------VNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAP 148

Query: 169 RSSDMVLALLENSTSASHEGPN-GKTALHAAAMK 201
               +     +        G N  +        K
Sbjct: 149 LRELLRERAEKM-------GQNLNRIPYKDTFWK 175

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 55.9 bits (136), Expect = 4e-10
 Identities = 15/81 (18%), Positives = 26/81 (32%)

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           + E    +       N   V +      +     ++ G +PL+ A     S +V  L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 181 STSASHEGPNGKTALHAAAMK 201
               +       T LH AA  
Sbjct: 62  GARINVMNRGDDTPLHLAASH 82

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 8/49 (16%), Positives = 22/49 (44%), Gaps = 1/49 (2%)

Query: 154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG-PNGKTALHAAAMK 201
            + +    ++      ++  V   L+N+ +  ++G  +G + LH A  +
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE 49

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 87.2 bits (217), Expect = 2e-20
 Identities = 51/239 (21%), Positives = 83/239 (34%), Gaps = 77/239 (32%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +AA +GN E       +++  L        A      T LH+         A+     
Sbjct: 28  LLEAARSGNEE-------KLMALLTPLNVNCHASDGRKSTPLHL---------AAGYNRV 71

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
            I++    LLLQ    V+AK   G  PLH A  +GH ++  +L++  A            
Sbjct: 72  RIVQ----LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC----------- 116

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                   +   +  + T LHEA     V+V  +L     D P   N  GK+ + MA   
Sbjct: 117 --------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTP 167

Query: 169 RSSDMVLALLENST--SASHEGP-------------------NGKTALHAAAMKSYFGK 206
              + +    +  +   A+ E                     + +TALH A    +  +
Sbjct: 168 ELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR 226

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 83.3 bits (207), Expect = 4e-19
 Identities = 35/190 (18%), Positives = 68/190 (35%), Gaps = 42/190 (22%)

Query: 31  AKTKNTILH-------VNIRSKESEN-----ASTKFVEEILEKCPLLLLQ---VNAK--- 72
            +   + L          +  +  ++     A +   E+++    LL       +A    
Sbjct: 1   GEFGKSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMA---LLTPLNVNCHASDGR 57

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
             TPLH+AA +    IV++L++  A                    +   +K     LH A
Sbjct: 58  KSTPLHLAAGYNRVRIVQLLLQHGAD-------------------VHAKDKGGLVPLHNA 98

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
             + + +V E+L K       + +    TPL+ AA     ++   LL +    +    +G
Sbjct: 99  CSYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG 157

Query: 192 KTALHAAAMK 201
           K+A+  A   
Sbjct: 158 KSAVDMAPTP 167

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 79.8 bits (198), Expect = 8e-18
 Identities = 48/222 (21%), Positives = 80/222 (36%), Gaps = 51/222 (22%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A + G+ E        V + LL       A      T LH          A++K   
Sbjct: 95  LHNACSYGHYE--------VTELLLKHGACVNAMDLWQFTPLHE---------AASKNRV 137

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHE-------- 102
           E+     LLL            G++ + +A      + +    +   LLQ          
Sbjct: 138 EVCS---LLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKV 194

Query: 103 NEELESGIRTARHMIRMTNKEKNTALHEAVCH---QNVDVVEILTKEDPDYPYSANNDGK 159
            + L         +     +   TALH AV     +   V E+L ++  +     N D  
Sbjct: 195 KKTLALE-----IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFM 248

Query: 160 TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           TPL++AA+   +D++  L ++    +     G+TALH AA+ 
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALA 290

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 45/212 (21%), Positives = 70/212 (33%), Gaps = 59/212 (27%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +AA   +L          +K+ L        + ++  T LH          A      
Sbjct: 182 LLQAAREADLA--------KVKKTLALEIINFKQPQSHETALHC---------AVASLHP 224

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           +  +   LLL +   VN K     TPLHVAA+  H+D++ VL +  AK            
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK------------ 272

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                  +   +    TALH A    ++    +L     D P   +  G T   M     
Sbjct: 273 -------MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD-PSIISLQGFTAAQMGN--- 321

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
             + V  +L    S      +    L  A+  
Sbjct: 322 --EAVQQILSE--STPMRTSDVDYRLLEASKA 349

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 39/206 (18%), Positives = 62/206 (30%), Gaps = 41/206 (19%)

Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK 61
           D N +K  + G                  A++ +  LH          A+ +     L  
Sbjct: 46  DTNWWKGTSKGRTGLIPSNYVAE-----QAESIDNPLHE---------AAKRGNLSWLR- 90

Query: 62  CPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH 115
               L     VN     G T L+ A   GH DIV +L          N EL         
Sbjct: 91  --ECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML------FTQPNIELNQ------- 135

Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
                NK  +TALH A      D+V++L  +        N + K    MA +   + ++ 
Sbjct: 136 ----QNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLK 190

Query: 176 ALLENSTSASHEGPNGKTALHAAAMK 201
                    +            + ++
Sbjct: 191 KKQGTDAVRTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 81.5 bits (202), Expect = 3e-19
 Identities = 26/150 (17%), Positives = 37/150 (24%), Gaps = 32/150 (21%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH--------------MIR 118
           G+  +  A           L              +    T                  + 
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEG---DIIYITDMS-DTNWWKGTSKGRTGLIPSNYVA 67

Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
              +  +  LHEA    N+  +              +  G T LY A      D+V  L 
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLF 126

Query: 179 ENSTSASHEGPN-------GKTALHAAAMK 201
                 +            G TALHAAA K
Sbjct: 127 ------TQPNIELNQQNKLGDTALHAAAWK 150

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 47.6 bits (114), Expect = 5e-07
 Identities = 10/82 (12%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
             K     +  A+        + L  E+ D      +   T  +       + ++ +   
Sbjct: 8   PVKPGQVKVFRALYTFEPRTPDELYIEEGD-IIYITDMSDTNWWKGTSKGRTGLIPSNYV 66

Query: 180 NSTSASHEGPNGKTALHAAAMK 201
              +      +    LH AA +
Sbjct: 67  AEQAE-----SIDNPLHEAAKR 83

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 41.1 bits (97), Expect = 8e-05
 Identities = 6/51 (11%), Positives = 10/51 (19%)

Query: 151 PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           P      G+  ++ A           L        +      T       K
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK 55

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 85.0 bits (211), Expect = 3e-20
 Identities = 31/133 (23%), Positives = 47/133 (35%), Gaps = 19/133 (14%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           V ++ ETP   AA+      +  L+E                      +   ++   TAL
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRD-------------------VDAVDENGRTAL 81

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
                  +   V +L +   D  +     G T L+MAA Y   ++V AL+E       E 
Sbjct: 82  LFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED 141

Query: 189 PNGKTALHAAAMK 201
             G TAL  A   
Sbjct: 142 ERGLTALELAREI 154

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 20/140 (14%), Positives = 37/140 (26%), Gaps = 35/140 (25%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
           +  +   G T L +A +   +      ++                   R        EK 
Sbjct: 137 IEVEDERGLTALELAREILKTTPKGNPMQFG----------------RRI-----GLEKV 175

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
             + E    +  +V EI+ K            GK   Y+       D       +     
Sbjct: 176 INVLEGQVFEYAEVDEIVEK---------RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV 226

Query: 186 HEGPNGKTALHAAAMKSYFG 205
            +  + +  L  A  +S  G
Sbjct: 227 AK--DYEDGLEYAVAESVIG 244

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 6e-11
 Identities = 27/131 (20%), Positives = 46/131 (35%), Gaps = 12/131 (9%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           GE    + ++      +  L+E       ++    S    + ++      E  T    A 
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIE------WKDGHSPS-WVPSSYIAADVVSEYETPWWTAA 53

Query: 133 CHQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH-EGPN 190
              +   +  L ++ D D   + + +G+T L   A   S   V  L E      H +   
Sbjct: 54  RKADEQALSQLLEDRDVD---AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110

Query: 191 GKTALHAAAMK 201
           G TALH AA  
Sbjct: 111 GLTALHMAAGY 121

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 3e-20
 Identities = 39/209 (18%), Positives = 77/209 (36%), Gaps = 44/209 (21%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A               V++ L+T      A  ++  T  H+       E+ S   + 
Sbjct: 50  LHLAVITTLPS--------VVRLLVTAGASPMALDRHGQTAAHL-----ACEHRSPTCLR 96

Query: 57  EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRT 112
            +L+      L + A+   G T LHVA      + V++L+ER A +    +         
Sbjct: 97  ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI----DAV------- 145

Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
                    K   + L  AV + ++ +V++L +   +   +    G + L+ A+      
Sbjct: 146 -------DIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLP 197

Query: 173 MVLALLENSTSASHEGPNGKTALHAAAMK 201
           +V  L+ +   +S +  +  T L  A  +
Sbjct: 198 LVRTLVRSGADSSLKNCHNDTPLMVARSR 226

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 82.5 bits (205), Expect = 2e-19
 Identities = 35/140 (25%), Positives = 56/140 (40%), Gaps = 22/140 (15%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
                  G+TPLH+A   G+   V  LV             + G       + + N  + 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLF---------QQGGRE-----LDIYNNLRQ 47

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T LH AV      VV +L       P + +  G+T  ++A ++RS   + ALL+++   +
Sbjct: 48  TPLHLAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGT 106

Query: 186 H----EGPNGKTALHAAAMK 201
                   +G TALH A   
Sbjct: 107 LDLEARNYDGLTALHVAVNT 126

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.9 bits (175), Expect = 4e-15
 Identities = 32/192 (16%), Positives = 57/192 (29%), Gaps = 52/192 (27%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE--------SENASTKFVE 56
              A    +             R L        L +  R+ +              + V+
Sbjct: 83  AHLACEHRSPT---------CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 57  EILEKCPLLLLQ---VNAK----GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
                  LLL +   ++A     G +PL  A +     +V++L++  A +    N     
Sbjct: 134 -------LLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV----NA---- 178

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                           ++ALH A     + +V  L +   D     N    TPL +A   
Sbjct: 179 -----------QMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSR 226

Query: 169 RSSDMVLALLEN 180
           R  D++      
Sbjct: 227 RVIDILRGKATR 238

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 85.2 bits (212), Expect = 4e-20
 Identities = 41/212 (19%), Positives = 71/212 (33%), Gaps = 57/212 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           + +AA  G+           ++ L++        T +  + LH          A      
Sbjct: 63  MHEAAIHGHQL--------SLRNLISQGWAVNIITADHVSPLHE---------ACLGGHL 105

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
             ++   +LL     VN       TPL  A   G  D V +L++  A +      E    
Sbjct: 106 SCVK---ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASV----QPE---- 154

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                        +  + +HEA    +V+ V  L     +      +   TPLY+A + +
Sbjct: 155 ------------SDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQ 201

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
               V  LLE+     ++G    + LHA    
Sbjct: 202 QRACVKKLLESGADV-NQGKGQDSPLHAVVRT 232

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 83.7 bits (208), Expect = 1e-19
 Identities = 38/215 (17%), Positives = 67/215 (31%), Gaps = 61/215 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +A   G+L          +K LL         T +  T L           A      
Sbjct: 96  LHEACLGGHLS--------CVKILLKHGAQVNGVTADWHTPLFN---------ACVSGSW 138

Query: 57  EILEKCPLLLLQ----VNAK--GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           + +     LLLQ    V  +    +P+H AA+ GH + V  L+     +    + +    
Sbjct: 139 DCVN----LLLQHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI----DHK---- 186

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAAD 167
                           T L+ A  +Q    V+ L +   D +          +PL+    
Sbjct: 187 -----------ISHLGTPLYLACENQQRACVKKLLESGADVN----QGKGQDSPLHAVVR 231

Query: 168 YRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
             S ++   L++       +   GK  +     +S
Sbjct: 232 TASEELACLLMDFGADTQAKNAEGKRPVELVPPES 266

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.5 bits (197), Expect = 5e-18
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 24/134 (17%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
                +P+H AA  GH   +R L+ +                      + +   +  + L
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWA-------------------VNIITADHVSPL 96

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS-HE 187
           HEA    ++  V+IL K           D  TPL+ A    S D V  LL++   AS   
Sbjct: 97  HEACLGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP 153

Query: 188 GPNGKTALHAAAMK 201
             +  + +H AA +
Sbjct: 154 ESDLASPIHEAARR 167

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.2 bits (173), Expect = 1e-14
 Identities = 33/192 (17%), Positives = 62/192 (32%), Gaps = 61/192 (31%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL-------TAKTKNTILHVNIRSKESENASTKFVEE 57
           LF A  +G+ +         +  LL             + +H          A+ +   E
Sbjct: 129 LFNACVSGSWD--------CVNLLLQHGASVQPESDLASPIHE---------AARRGHVE 171

Query: 58  ILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGI 110
            +     L+     ++ K     TPL++A +      V+ L+E  A +            
Sbjct: 172 CVN---SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV------------ 216

Query: 111 RTARHMIRMTNKEKN--TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                     N+ K   + LH  V   + ++  +L     D   + N +GK P+ +    
Sbjct: 217 ----------NQGKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE 265

Query: 169 RSSDMVLALLEN 180
             S +    LE 
Sbjct: 266 --SPLAQLFLER 275

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 14/136 (10%)

Query: 79  VAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHM------------IRMTNKEKN 125
           + +   H      LV R + +   + ++                       +        
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           + +HEA  H +   +  L  +          D  +PL+ A        V  LL++    +
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 186 HEGPNGKTALHAAAMK 201
               +  T L  A + 
Sbjct: 120 GVTADWHTPLFNACVS 135

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 81.3 bits (202), Expect = 6e-20
 Identities = 31/133 (23%), Positives = 49/133 (36%), Gaps = 21/133 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           N +GET LH+A+  G    V  L++  +      N                 +    T L
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDP----NV---------------KDHAGWTPL 47

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           HEA  H ++ VVE+L +       +      +PL+ AA     D+V  LL    S +   
Sbjct: 48  HEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106

Query: 189 PNGKTALHAAAMK 201
             G   +     +
Sbjct: 107 IFGLRPVDYTDDE 119

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.2 bits (186), Expect = 1e-17
 Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 28/124 (22%)

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHM 116
            LLQ     N K   G TPLH A   GH  +V +L++  A +    N             
Sbjct: 28  YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV----NT------------ 71

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
              T  + ++ LH+A  + +VD+V++L         + N  G  P+    D     ++L 
Sbjct: 72  ---TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLL 127

Query: 177 LLEN 180
             +N
Sbjct: 128 PEKN 131

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.4 bits (145), Expect = 9e-12
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
           TN    T LH A    ++  VE L +   D P   ++ G TPL+ A ++    +V  LL+
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 180 NSTSASHEGPNGKTALHAAAMK 201
           +    +  G    + LH AA  
Sbjct: 65  HKALVNTTGYQNDSPLHDAAKN 86

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.4 bits (88), Expect = 7e-04
 Identities = 18/106 (16%), Positives = 33/106 (31%), Gaps = 34/106 (32%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +A   G+L+        V++ LL              + LH          A+     
Sbjct: 47  LHEACNHGHLK--------VVELLLQHKALVNTTGYQNDSPLHD---------AAKNGHV 89

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERA 96
           +I++   LLL      NA    G  P+          ++ +  +  
Sbjct: 90  DIVK---LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 80.1 bits (199), Expect = 1e-19
 Identities = 26/134 (19%), Positives = 44/134 (32%), Gaps = 21/134 (15%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
           + +  +     A K G  D V+  V +                      +  T +     
Sbjct: 3   LGSMCDKEFMWALKNGDLDEVKDYVAKGED-------------------VNRTLEGGRKP 43

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
           LH A     ++++E L  +  D   + +    TPL  A        V  LL      + +
Sbjct: 44  LHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVK 102

Query: 188 GPNGKTALHAAAMK 201
           GP+G TA  A   +
Sbjct: 103 GPDGLTAFEATDNQ 116

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.9 bits (110), Expect = 6e-07
 Identities = 27/152 (17%), Positives = 44/152 (28%), Gaps = 54/152 (35%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
              A   G+L+         +K  +          +     LH          A+     
Sbjct: 11  FMWALKNGDLD--------EVKDYVAKGEDVNRTLEGGRKPLH---------YAADCGQL 53

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           EILE    LLL+   +NA      TPL  A   GH   V++L+ + A             
Sbjct: 54  EILE---FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD------------ 98

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVE 141
                    +   +  TA           +++
Sbjct: 99  -------KTVKGPDGLTAFEATDNQAIKALLQ 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.5 bits (205), Expect = 2e-19
 Identities = 51/213 (23%), Positives = 86/213 (40%), Gaps = 56/213 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +AA   +LE         +K L+        K     T LH+         A+ K   
Sbjct: 48  LMEAAENNHLE--------AVKYLIKAGALVDPKDAEGSTCLHL---------AAKKGHY 90

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
           E+++    LL      VN +   G TP+  A ++ H D+V++L+ + +            
Sbjct: 91  EVVQ---YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----------- 136

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                   I + + E+N  LH A     VD+ EIL     D  ++ N  G +PL++AA  
Sbjct: 137 --------INIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARE 187

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
              D V+  L   +  + +   G+T L  A++ 
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 32/143 (22%), Positives = 55/143 (38%), Gaps = 35/143 (24%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
              +     +PLH AA+ GH DI  +LV+              G       I   ++++ 
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQA-------------GAN-----IDTCSEDQR 45

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T L EA  + +++ V+ L K         + +G T L++AA     ++V  LL      S
Sbjct: 46  TPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLL------S 98

Query: 186 HEGPN-------GKTALHAAAMK 201
           +   +       G T +  A   
Sbjct: 99  NGQMDVNCQDDGGWTPMIWATEY 121

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.1 bits (199), Expect = 1e-18
 Identities = 45/227 (19%), Positives = 85/227 (37%), Gaps = 52/227 (22%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA AG+++        +   L+         +++  T L           A+     
Sbjct: 15  LHAAAEAGHVD--------ICHMLVQAGANIDTCSEDQRTPLME---------AAENNHL 57

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
           E ++    L+     V+ K   G T LH+AAK GH ++V+ L+       +   ++    
Sbjct: 58  EAVK---YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS------NGQMDVNC-- 106

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS 170
                     +    T +  A  +++VD+V++L  +  D     +N+    L+ AA    
Sbjct: 107 ---------QDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGC 156

Query: 171 SDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
            D+   LL           +G + LH AA ++ +      LS    +
Sbjct: 157 VDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.4 bits (179), Expect = 8e-16
 Identities = 40/191 (20%), Positives = 62/191 (32%), Gaps = 54/191 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE--------SENASTKFVE 56
           L  AA  G+ E        V++ LL+    +    VN +           +E      V+
Sbjct: 81  LHLAAKKGHYE--------VVQYLLSNGQMD----VNCQDDGGWTPMIWATEYKHVDLVK 128

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
                  LLL +   +N +       LH AA  G  DI  +L+     L    +      
Sbjct: 129 -------LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL----HA----- 172

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                      N   ++ LH A      D V +    D D     N +G+TPL  A+   
Sbjct: 173 ----------VNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNS 221

Query: 170 SSDMVLALLEN 180
                L + + 
Sbjct: 222 QVWSALQMSKA 232

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 54.0 bits (131), Expect = 4e-09
 Identities = 30/160 (18%), Positives = 55/160 (34%), Gaps = 54/160 (33%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           +  A    +++        ++K LL+       +       LH          A+     
Sbjct: 115 MIWATEYKHVD--------LVKLLLSKGSDINIRDNEENICLHW---------AAFSGCV 157

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           +I E   +LL     ++A    G++PLH+AA+    D V + + R +             
Sbjct: 158 DIAE---ILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD------------ 202

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 149
                  + + NKE  T L  A  +  V     ++K   D
Sbjct: 203 -------VTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.5 bits (204), Expect = 2e-19
 Identities = 42/248 (16%), Positives = 75/248 (30%), Gaps = 40/248 (16%)

Query: 5   LFKAAAAGNLEPFKDIAREVI--------KRLLTAKTKNTILHV-NIRSKESENASTKFV 55
           LF   + G+ +  + +   ++        +      T  T L    +      N +   +
Sbjct: 9   LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPIL 68

Query: 56  EEILEKCPLLLLQVNA-------KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELE 107
            +I EK   +   +N+       +G+T LH+A +      V +LVE+ A +         
Sbjct: 69  LDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-----HAQA 123

Query: 108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNDGKTPLYMA 165
            G                  L  A C     +V  LT+           ++ G T L+  
Sbjct: 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHAL 183

Query: 166 ADYRS---------SDMVLALLE-----NSTSASHEGPN--GKTALHAAAMKSYFGKFSY 209
                         + M   LL         +      N  G + L  AA     G F +
Sbjct: 184 VAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQH 243

Query: 210 TLSVGISI 217
            +   I+ 
Sbjct: 244 IIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 75.6 bits (186), Expect = 1e-16
 Identities = 37/194 (19%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 55  VEEILEKCPLLLLQ---VNAK-------GETPLHVAA---KFGHSDIVRVLVERAKLLQH 101
            + +      LL     +  +       G+T L  A      G +D + +L++ A+   +
Sbjct: 18  PDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN 77

Query: 102 ENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL-------------TKEDP 148
             E + S  R              TALH A+  +    VE+L                 P
Sbjct: 78  MREFINSPFRDV-------YYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQP 130

Query: 149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH---EGPNGKTALHAAAMKSYFG 205
                    G+ PL +AA      +V  L EN    +    +   G T LHA    +   
Sbjct: 131 KDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNT 190

Query: 206 KFSYTLSVGISILI 219
           + +      +  L+
Sbjct: 191 RENTKFVTKMYDLL 204

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 65.6 bits (160), Expect = 3e-13
 Identities = 30/139 (21%), Positives = 45/139 (32%), Gaps = 34/139 (24%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           GE PL +AA      IV  L              E+G + A   +R  +   NT LH  V
Sbjct: 140 GELPLSLAACTNQPHIVHYL-------------TENGHKQA--DLRRQDSRGNTVLHALV 184

Query: 133 CHQN---------VDVVEILTK------EDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
              +           + ++L         D +     NNDG +PL MAA      +   +
Sbjct: 185 AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHI 244

Query: 178 LENSTSASHEGPNGKTALH 196
           +    +            H
Sbjct: 245 IRREIA----DAAAHHHHH 259

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 25/161 (15%), Positives = 41/161 (25%), Gaps = 47/161 (29%)

Query: 73  GETPLHVAAKFG----HSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
               L      G       ++  L+    +L   E  E  +G                T 
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTG---------------KTC 49

Query: 128 LHEAVCHQN---VDVVEILTKEDPDYPY----------SANNDGKTPLYMAADYRSSDMV 174
           L +A+ + +    D + IL                        G+T L++A + R    V
Sbjct: 50  LPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYV 109

Query: 175 LALLEN--------------STSASHEGPNGKTALHAAAMK 201
             L+E                         G+  L  AA  
Sbjct: 110 ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACT 150

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 81.3 bits (202), Expect = 3e-19
 Identities = 41/215 (19%), Positives = 69/215 (32%), Gaps = 54/215 (25%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +A              +V + L +       K ++    LH          + +    
Sbjct: 6   LHQACMENEFF-------KVQELLHSKPSLLLQKDQDGRIPLHW---------SVSFQAH 49

Query: 57  EILEKCPLLLLQ---VNAK------GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELE 107
           EI      LL +   VN        G TP H+A   G+ ++V+ L +R            
Sbjct: 50  EITS---FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDR-----------P 95

Query: 108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
                    +     +  T LH AV  +  +V + L +         +   + PL+ AA 
Sbjct: 96  LKPD-----LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAAS 149

Query: 168 YRSSDMVLALLENSTSASHEG-PNGKTALHAAAMK 201
             S  ++  L     SA +     G T L  A  +
Sbjct: 150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAE 184

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 21/133 (15%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
              PLH A        V       +LL                 +   +++    LH +V
Sbjct: 2   SNYPLHQACMENEFFKV------QELL------HSKPSL-----LLQKDQDGRIPLHWSV 44

Query: 133 CHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN 190
             Q  ++   L  +  + +     ++ G TP ++A    + ++V +L +           
Sbjct: 45  SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKIT 104

Query: 191 --GKTALHAAAMK 201
             G T LH A  K
Sbjct: 105 NQGVTCLHLAVGK 117

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.4 bits (197), Expect = 2e-18
 Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 36/144 (25%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           +N     G T LH+A      ++ + L+E  A                    +R+ +K  
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-------------------VRIKDKFN 140

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
              LH A    ++ ++E+L           +  G TPL+ A      D  + L+      
Sbjct: 141 QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV------ 194

Query: 185 SHEGPN-------GKTALHAAAMK 201
              G         G  A   A  +
Sbjct: 195 EKYGAEYDLVDNKGAKAEDVALNE 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 45.1 bits (108), Expect = 4e-06
 Identities = 32/156 (20%), Positives = 45/156 (28%), Gaps = 59/156 (37%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A      E        V + L+        K K     LH       +   S K +E
Sbjct: 111 LHLAVGKKWFE--------VSQFLIENGASVRIKDKFNQIPLHR-----AASVGSLKLIE 157

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER--AKLLQHENEELE 107
                  LL       VN +   G TPL  A   GH D   +LVE+  A+          
Sbjct: 158 -------LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE---------- 200

Query: 108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL 143
                      + + +   A   A+   N  V +  
Sbjct: 201 ---------YDLVDNKGAKAEDVAL---NEQVKKFF 224

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.6 bits (205), Expect = 3e-19
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 22/135 (16%)

Query: 69  VNAK-GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNT 126
            N    E PLH AA    + IV++L+          ++                + + NT
Sbjct: 57  KNLLENEFPLHQAATLEDTKIVKILLFSGLDD----SQ---------------FDDKGNT 97

Query: 127 ALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH 186
           AL+ AV   N+  V++  K++    +      KT  Y A       +V   L     ++ 
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PSTF 156

Query: 187 EGPNGKTALHAAAMK 201
           +     + +H     
Sbjct: 157 DLAILLSCIHITIKN 171

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 20/211 (9%), Positives = 58/211 (27%), Gaps = 63/211 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN---TILHVNIRSKESENASTKFV 55
           L+ A  +GN++         +K  +          K    T  +          A     
Sbjct: 99  LYYAVDSGNMQ--------TVKLFVKKNWRLMFYGKTGWKTSFYH---------AVMLND 141

Query: 56  EEILEKCPLLLLQVNA------KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
             I+       L             + +H+  K GH D++ +L++         N     
Sbjct: 142 VSIVS----YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTST----NTN--- 190

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                       +      +  A+ ++++++++ L        +  + +  +        
Sbjct: 191 -----------NSLLFIPDIKLAIDNKDIEMLQAL--------FKYDINIYSANLENVLL 231

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAA 199
             +++   ++E       +       +    
Sbjct: 232 DDAEIAKMIIEKHVEYKSDSYTKDLDIVKNN 262

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 80.1 bits (199), Expect = 4e-19
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
            N++ +  L  AAK G  + V+ L                 +       R     ++T L
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQ------------SVN-----CRDIEGRQSTPL 46

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A  +  V VVE L +   D  ++ +  G  PL+ A  Y   ++   L+++    +   
Sbjct: 47  HFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVAD 105

Query: 189 PNGKTALHAAAMK 201
               T LH AA K
Sbjct: 106 LWKFTPLHEAAAK 118

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 74.0 bits (183), Expect = 7e-17
 Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 24/135 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
                    TPLH AA +    +V  L++  A +    +                 +K  
Sbjct: 35  CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV----HA---------------KDKGG 75

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
              LH A  + + +V E+L K        A+    TPL+ AA     ++   LL++    
Sbjct: 76  LVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP 134

Query: 185 SHEGPNGKTALHAAA 199
           + +  +G T L    
Sbjct: 135 TKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 48.2 bits (116), Expect = 2e-07
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 55/154 (35%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA    +         V++ LL       AK K     LH         NA +    
Sbjct: 46  LHFAAGYNRVS--------VVEYLLQHGADVHAKDKGGLVPLH---------NACSYGHY 88

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           E+ E   LL+     VN       TPLH AA  G  +I ++L++  A       +     
Sbjct: 89  EVAE---LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP----TK----- 136

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL 143
                      N++ NT L       + D+ ++L
Sbjct: 137 ----------KNRDGNTPLDLV-KDGDTDIQDLL 159

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.5 bits (205), Expect = 4e-19
 Identities = 45/230 (19%), Positives = 78/230 (33%), Gaps = 77/230 (33%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN---TILHVNIRSKESENASTKFV 55
           L KA    +++        ++++LL        + +    T LH         NA     
Sbjct: 9   LIKAVQNEDVD--------LVQQLLEGGANVNFQEEEGGWTPLH---------NAVQMSR 51

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
           E+I+E   LLL        +   G TP  +AA  G   ++++ + + A +    NE    
Sbjct: 52  EDIVE---LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV----NE---- 100

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK---------EDPDYPYSANNDGK 159
                       +    TA  EA  +  V  ++ L K         +  +        G 
Sbjct: 101 -----------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA 149

Query: 160 TPLYMAADYRSSDMVLALLENSTSASHEGPN-------GKTALHAAAMKS 202
           T L  AA+    +++  LL         G +       G+ AL  A + S
Sbjct: 150 TALMDAAEKGHVEVLKILL------DEMGADVNACDNMGRNALIHALLSS 193

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.4 bits (202), Expect = 1e-18
 Identities = 47/216 (21%), Positives = 76/216 (35%), Gaps = 48/216 (22%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A      +        +++ LL        + KN  T   +         A+     
Sbjct: 43  LHNAVQMSRED--------IVELLLRHGADPVLRKKNGATPFLL---------AAIAGSV 85

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           ++L+   L L +   VN     G T    AA +G    ++ L +R A +    N   ++ 
Sbjct: 86  KLLK---LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV----NLRRKTK 138

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                       K   TAL +A    +V+V++IL  E      + +N G+  L  A    
Sbjct: 139 -----EDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193

Query: 170 SSDMVLA----LLENSTSASHEGPNGKTALHAAAMK 201
               V A    LL++    +  G  GKT L  A  K
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.4 bits (197), Expect = 5e-18
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 20/133 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
             +    L  A +    D+V+ L+E  A +    N +                +   T L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANV----NFQ--------------EEEGGWTPL 43

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H AV     D+VE+L +   D P     +G TP  +AA   S  ++   L      +   
Sbjct: 44  HNAVQMSREDIVELLLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

Query: 189 PNGKTALHAAAMK 201
             G TA   AA+ 
Sbjct: 103 FYGFTAFMEAAVY 115

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.8 bits (185), Expect = 2e-16
 Identities = 30/145 (20%), Positives = 50/145 (34%), Gaps = 35/145 (24%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
           ++   G T L  AA+ GH +++++L      L     ++ +            +     A
Sbjct: 143 RLRKGGATALMDAAEKGHVEVLKIL------LDEMGADVNAC-----------DNMGRNA 185

Query: 128 LHEAVCHQNVD----VVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS 183
           L  A+   +      +  +L     D        GKTPL +A + +   +V  LL     
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLL----- 239

Query: 184 ASHEGPN-------GKTALHAAAMK 201
              E          GKTAL  A   
Sbjct: 240 -EQEHIEINDTDSDGKTALLLAVEL 263

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 23/125 (18%)

Query: 64  LLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM 116
           +LL +    VNA    G   L  A        V        LL      L+ G       
Sbjct: 166 ILLDEMGADVNACDNMGRNALIHALLSSDDSDVE---AITHLL------LDHGAD----- 211

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEIL-TKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
           + +  +   T L  AV  +++ +V+ L  +E  +     ++DGKT L +A + +   +  
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAE 270

Query: 176 ALLEN 180
            L + 
Sbjct: 271 LLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 23/102 (22%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKR--LLTAKTKN--TILHVNIRSKESENASTKFVEEILE 60
           L  A  + +    + I   ++     +  + +   T L +       E      V+    
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLIL-----AVEKKHLGLVQ---- 236

Query: 61  KCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER 95
               LL Q    +N     G+T L +A +     I  +L +R
Sbjct: 237 ---RLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 15/56 (26%), Positives = 17/56 (30%), Gaps = 15/56 (26%)

Query: 154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN--------GKTALHAAAMK 201
           A  +    L  A      D+V  LLE        G N        G T LH A   
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEG-------GANVNFQEEEGGWTPLHNAVQM 49

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.1 bits (201), Expect = 6e-19
 Identities = 42/181 (23%), Positives = 71/181 (39%), Gaps = 36/181 (19%)

Query: 55  VEEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELE 107
           V+ + +   LL  +   V+ +   GET LH+AA + + +   VL+E   +L+        
Sbjct: 16  VQALSK---LLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS-- 70

Query: 108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL------------TKEDPDYPYSAN 155
                          E  TALH AV +QNV++V  L                   P++  
Sbjct: 71  ------------ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLI 118

Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI 215
             G+ PL  AA   S ++V  L+E+      +   G T LH   ++          ++ +
Sbjct: 119 YYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLL 178

Query: 216 S 216
           S
Sbjct: 179 S 179

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 39/236 (16%), Positives = 81/236 (34%), Gaps = 42/236 (17%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA   +++        + K L         +     T LH+      +   + +   
Sbjct: 7   LLLAAKENDVQ-------ALSKLLKFEGCEVHQRGAMGETALHI-----AALYDNLEAAM 54

Query: 57  EILEKCP-LLLLQVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIR 111
            ++E  P L+   + ++   G+T LH+A    + ++VR L+ R A +    +      + 
Sbjct: 55  VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV----SARATGSVF 110

Query: 112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS 171
             R    +   E    L  A C  + ++V +L +   D   + ++ G T L++     + 
Sbjct: 111 HYRPHNLIYYGE--HPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNK 167

Query: 172 DMVLALLE---------NSTSASHEGPN-GKTALHAAAMKSYFGKFSYTLSVGISI 217
                +           +  S      N G T    A ++     F + +     I
Sbjct: 168 TFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHI 223

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.1 bits (188), Expect = 4e-17
 Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 34/146 (23%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
            E+PL +AAK      +  L     L          G       +        TALH A 
Sbjct: 3   WESPLLLAAKENDVQALSKL-----LKFE-------GCE-----VHQRGAMGETALHIAA 45

Query: 133 CHQNVDVVEILTKEDPD----YPYSANNDGKTPLYMAADYRSSDMVLALLEN-------- 180
            + N++   +L +  P+       S   +G+T L++A   ++ ++V ALL          
Sbjct: 46  LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARA 105

Query: 181 -----STSASHEGPNGKTALHAAAMK 201
                     +    G+  L  AA  
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACV 131

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 27/138 (19%), Positives = 46/138 (33%), Gaps = 23/138 (16%)

Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKE 123
            +          +  A ++G  +  R LVE                       +R  +KE
Sbjct: 1   HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYD-------------------VRQPDKE 41

Query: 124 KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS 183
             T LH A  +  +D+V+    +         +   TPL+ A       MV+ L++    
Sbjct: 42  NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101

Query: 184 ASHEGPNGKTALHAAAMK 201
            S     G + +H AA  
Sbjct: 102 PSLIDGEGCSCIHLAAQF 119

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 79.0 bits (196), Expect = 4e-18
 Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 23/139 (16%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           V        T LH AA     D+V+  + + A +    ++                    
Sbjct: 35  VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV----DQL--------------GGDLN 76

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
           +T LH A    ++ +V  L K   D P   + +G + +++AA +  + +V  L+      
Sbjct: 77  STPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 185 SHEGPNGKTALHAAAMKSY 203
                NG T L  AA +++
Sbjct: 136 DMMDQNGMTPLMWAAYRTH 154

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 77.1 bits (191), Expect = 2e-17
 Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 24/138 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
            +     G + +H+AA+FGH+ IV  L+ +                      + M ++  
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD-------------------VDMMDQNG 142

Query: 125 NTALHEAVCHQN-VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS 183
            T L  A    + VD   +L   +            T L+ A    ++ ++  LLE   +
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN 202

Query: 184 ASHEGPNGKTALHAAAMK 201
              +   G++AL  A  +
Sbjct: 203 VDAQNIKGESALDLAKQR 220

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 73.2 bits (181), Expect = 5e-16
 Identities = 40/189 (21%), Positives = 68/189 (35%), Gaps = 49/189 (25%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN--TILHVNIRSKESENASTKFVE 56
           L  A   G+L         ++ +L+      +       + +H+      ++   T  V 
Sbjct: 80  LHWATRQGHLS--------MVVQLMKYGADPSLIDGEGCSCIHL-----AAQFGHTSIVA 126

Query: 57  EILEKCPLLLLQVNAK---GETPLHVAAKFGHS-DIVRVLVER-AKLLQHENEELESGIR 111
            ++ K       V+     G TPL  AA   HS D  R+L+     +    N        
Sbjct: 127 YLIAKGQ----DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV----NLG------ 172

Query: 112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS 171
                       KNTALH AV   N  V+ +L +   +   + N  G++ L +A   ++ 
Sbjct: 173 --------DKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNV 223

Query: 172 DMVLALLEN 180
            M+  L E 
Sbjct: 224 WMINHLQEA 232

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.8 bits (198), Expect = 1e-18
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 56/213 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA     +          KRLL        +     T LH          A +   +
Sbjct: 29  LHLAARYSRSD--------AAKRLLEASADANIQDNMGRTPLHA---------AVSADAQ 71

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
            + +   +L+      ++A+   G TPL +AA+     ++  L+   A +    N     
Sbjct: 72  GVFQ---ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV----NA---- 120

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                       +    +ALH A    NVD   +L K   +     NN  +TPL++AA  
Sbjct: 121 -----------VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAARE 168

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
            S +    LL++  +        +     A  +
Sbjct: 169 GSYETAKVLLDHFANRDITDHMDRLPRDIAQER 201

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 79.0 bits (196), Expect = 3e-18
 Identities = 37/151 (24%), Positives = 55/151 (36%), Gaps = 25/151 (16%)

Query: 58  ILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
                   + Q     N     GET LH+AA++  SD  + L+E                
Sbjct: 3   APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-------------SA 49

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS 170
                   + +    T LH AV      V +IL +       +  +DG TPL +AA    
Sbjct: 50  D-----ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV 104

Query: 171 SDMVLALLENSTSASHEGPNGKTALHAAAMK 201
             M+  L+ +    +     GK+ALH AA  
Sbjct: 105 EGMLEDLINSHADVNAVDDLGKSALHWAAAV 135

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.5 bits (192), Expect = 9e-18
 Identities = 41/207 (19%), Positives = 67/207 (32%), Gaps = 61/207 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT-------AKTKN--TILHVNIRSKESENASTKFV 55
           L  A +A            V + L+        A+  +  T L +         A+   V
Sbjct: 62  LHAAVSADAQG--------VFQILIRNRATDLDARMHDGTTPLIL---------AARLAV 104

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG 109
           E +LE    L+     VNA    G++ LH AA   + D   VL             L++G
Sbjct: 105 EGMLE---DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-------------LKNG 148

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                    M N  + T L  A    + +  ++L     +     ++  + P  +A +  
Sbjct: 149 AN-----KDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERM 202

Query: 170 SSDMVLALLENSTSASHEGPNGKTALH 196
             D+V  L E               LH
Sbjct: 203 HHDIVRLLDEY-------NLVRSPQLH 222

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 80.6 bits (200), Expect = 1e-18
 Identities = 44/182 (24%), Positives = 64/182 (35%), Gaps = 30/182 (16%)

Query: 31  AKTKN--TILHVNIRSKESENASTKFVEE-ILEKCPLLLLQ----VNAK---GETPLHVA 80
            +  +  T L +   S           EE         + Q     N     GET LH+A
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 81  AKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDV 139
           A++  SD  + L+E  A      N                 +    T LH AV      V
Sbjct: 65  ARYSRSDAAKRLLEASADA----NI---------------QDNMGRTPLHAAVSADAQGV 105

Query: 140 VEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
            +IL +       +  +DG TPL +AA      M+  L+ +    +     GK+ALH AA
Sbjct: 106 FQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA 165

Query: 200 MK 201
             
Sbjct: 166 AV 167

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.0 bits (196), Expect = 4e-18
 Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 50/217 (23%)

Query: 5   LFKAAAAGNLEPFKDIAR-----EVIKRLL---------TAKTKNTILHVNIRSKESENA 50
           L  A+ +G      +         VI   +         T +T  T LH+      +  +
Sbjct: 14  LMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL-----AARYS 68

Query: 51  STKFVEEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENE 104
            +   +        LL      N +   G TPLH A       + ++L      +++   
Sbjct: 69  RSDAAK-------RLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL------IRNRAT 115

Query: 105 ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYM 164
           +L++              +  T L  A       ++E L     D   + ++ GK+ L+ 
Sbjct: 116 DLDAR-----------MHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHW 163

Query: 165 AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           AA   + D  + LL+N  +   +    +T L  AA +
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAARE 200

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 78.7 bits (195), Expect = 6e-18
 Identities = 42/213 (19%), Positives = 72/213 (33%), Gaps = 56/213 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA     +          KRLL        +     T LH          A +   +
Sbjct: 61  LHLAARYSRSD--------AAKRLLEASADANIQDNMGRTPLHA---------AVSADAQ 103

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
            + +   +L+      ++A+   G TPL +AA+     ++  L+   A +    N     
Sbjct: 104 GVFQ---ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV----NA---- 152

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
                       +    +ALH A    NVD   +L K   +     NN  +TPL++AA  
Sbjct: 153 -----------VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAARE 200

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
            S +    LL++  +        +     A  +
Sbjct: 201 GSYETAKVLLDHFANRDITDHMDRLPRDIAQER 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.4 bits (184), Expect = 2e-16
 Identities = 38/191 (19%), Positives = 64/191 (33%), Gaps = 54/191 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT-------AKTKN--TILHVNIRSKESENASTKFV 55
           L  A +A            V + L+        A+  +  T L +         A+   V
Sbjct: 94  LHAAVSADAQG--------VFQILIRNRATDLDARMHDGTTPLIL---------AARLAV 136

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG 109
           E +LE    L+     VNA    G++ LH AA   + D   VL             L++G
Sbjct: 137 EGMLE---DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL-------------LKNG 180

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                    M N  + T L  A    + +  ++L     +     ++  + P  +A +  
Sbjct: 181 AN-----KDMQNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERM 234

Query: 170 SSDMVLALLEN 180
             D+V  L   
Sbjct: 235 HHDIVRLLDLE 245

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.0 bits (144), Expect = 8e-11
 Identities = 28/136 (20%), Positives = 41/136 (30%), Gaps = 41/136 (30%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
           VN +   G TPL +A+  G                                         
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGL-------------------------------------- 24

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
              +         V+     +        +  G+T L++AA Y  SD    LLE S  A+
Sbjct: 25  ETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN 84

Query: 186 HEGPNGKTALHAAAMK 201
            +   G+T LHAA   
Sbjct: 85  IQDNMGRTPLHAAVSA 100

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 79.8 bits (197), Expect = 3e-18
 Identities = 49/246 (19%), Positives = 82/246 (33%), Gaps = 40/246 (16%)

Query: 5   LFKAAAAGNLEPFKD--------IAREVIKRLLTAKTKNTILHV-NIRSKESENASTKFV 55
           +F A A  N +  +           R         +T  T L    +     +N +   +
Sbjct: 17  IFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALL 76

Query: 56  EEILEKCPLLLLQVNA-------KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELE 107
            ++  K   L   VNA       KG+T LH+A +  +  +V +LVE  A +     +   
Sbjct: 77  LDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-----QAAA 131

Query: 108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNDGKTPLYMA 165
           +G    +   R         L  A C   + +V+ L +         + ++ G T L+  
Sbjct: 132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191

Query: 166 ADY---------RSSDMVLALLE-----NSTSASHEGPN--GKTALHAAAMKSYFGKFSY 209
            +            + M   +L      + T    E  N  G T L  AA     G  +Y
Sbjct: 192 VEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY 251

Query: 210 TLSVGI 215
            L   I
Sbjct: 252 ILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.5 bits (191), Expect = 2e-17
 Identities = 30/144 (20%), Positives = 43/144 (29%), Gaps = 37/144 (25%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           GE PL +AA      IV+ L             L++  + A   I   +   NT LH  V
Sbjct: 148 GELPLSLAACTNQLAIVKFL-------------LQNSWQPA--DISARDSVGNTVLHALV 192

Query: 133 CHQNVDVVEILTK---------------EDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
              +  V                              N  G TPL +AA      ++  +
Sbjct: 193 EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYI 252

Query: 178 LENSTSASHEGPNGKTALHAAAMK 201
           L+          +     HAAA  
Sbjct: 253 LQR-------EIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 1e-09
 Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 37/159 (23%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
                  +  A    +   +  L+   +  +    + E              +   T L 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK----------DPETGKTCLL 59

Query: 130 EAVCHQ---NVDVVEIL-----TKEDPDYPYSAN-----NDGKTPLYMAADYRSSDMVLA 176
           +A+ +      D + +L       +      +A+       G+T L++A + R+  +V  
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTL 119

Query: 177 LLEN--------------STSASHEGPNGKTALHAAAMK 201
           L+EN               T        G+  L  AA  
Sbjct: 120 LVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 32/155 (20%), Positives = 50/155 (32%), Gaps = 56/155 (36%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL---------TAKTK--NTILHVNIRSKESENASTK 53
           L  AA    L         ++K LL         +A+    NT+LH  +   ++   +TK
Sbjct: 152 LSLAACTNQLA--------IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTK 203

Query: 54  F----VEEILEKCPLLLLQV------NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN 103
           F      EIL     L   +      N KG TPL +AA  G   ++  +++R        
Sbjct: 204 FVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR-------- 255

Query: 104 EELESGIRTARHMIRMTNKEKNTALHEAVC--HQN 136
                               +    H A    H +
Sbjct: 256 -----------------EIHEPECRHAAAHHHHHH 273

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 77.8 bits (193), Expect = 3e-18
 Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 24/137 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VNA+   G TPLH+AA  GH +IV VL++  A +    N                 +   
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV----NA---------------VDHAG 80

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            T L  A    ++++VE+L K   D   + + +G TPL++AA +   ++V  LL+N    
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV 139

Query: 185 SHEGPNGKTALHAAAMK 201
           + +   GKTA   +   
Sbjct: 140 NAQDKFGKTAFDISIDN 156

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 76.6 bits (190), Expect = 7e-18
 Identities = 35/133 (26%), Positives = 56/133 (42%), Gaps = 21/133 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
            +     L  AA+ G  D VR+L+   A                    +   +    T L
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGAD-------------------VNAEDASGWTPL 51

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A  + ++++VE+L K   D   + ++ G TPL +AA +   ++V  LL+N    +   
Sbjct: 52  HLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNAND 110

Query: 189 PNGKTALHAAAMK 201
             G T LH AAM 
Sbjct: 111 MEGHTPLHLAAMF 123

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.0 bits (178), Expect = 4e-16
 Identities = 49/192 (25%), Positives = 80/192 (41%), Gaps = 55/192 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L +AA AG  +         ++ L+       A+  +  T LH+         A+     
Sbjct: 18  LLEAARAGRDD--------EVRILMANGADVNAEDASGWTPLHL---------AAFNGHL 60

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           EI+E   +LL     VNA    G TPL +AA FGH +IV VL++  A             
Sbjct: 61  EIVE---VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD------------ 105

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                  +   + E +T LH A    ++++VE+L K   D   + +  GKT   ++ D  
Sbjct: 106 -------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNG 157

Query: 170 SSDMVLALLENS 181
           + D+   L + +
Sbjct: 158 NEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 153 SANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
              +D    L  AA     D V  L+ N    + E  +G T LH AA  
Sbjct: 9   HHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN 57

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.4 bits (196), Expect = 3e-18
 Identities = 29/129 (22%), Positives = 46/129 (35%), Gaps = 11/129 (8%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM--IRMTNKEKNTALHE 130
           GE PL +AA     D+V  L+E              G  T  H   +   N  +N+AL  
Sbjct: 136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG-NTVLHALVMIADNSPENSALVI 194

Query: 131 AVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN 190
            +    + +   L          +N+ G TPL +AA     ++   +L+          +
Sbjct: 195 HMYDGLLQMGARLCPTVQL-EEISNHQGLTPLKLAAKEGKIEIFRHILQR-------EFS 246

Query: 191 GKTALHAAA 199
           G  A H   
Sbjct: 247 GAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 76.8 bits (189), Expect = 3e-17
 Identities = 44/250 (17%), Positives = 70/250 (28%), Gaps = 41/250 (16%)

Query: 3   PNLFKAAAAGNLEPFKDIAREVIKRLLTA--------KTKNTILHV-NIRSKESENASTK 53
             LF   + G  E    +   +                T  T L    +  ++  NA   
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 54  FVEEILEKCPLLLLQVNA-------KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEE 105
            + +I +        VNA       +G + LH+A +      V++LVE  A +       
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-----HL 118

Query: 106 LESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY--PYSANNDGKTPLY 163
              G    +H            L  A C +  DVV  L +         + ++ G T L+
Sbjct: 119 RACGRFFQKH-QGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLH 177

Query: 164 MAADYRSS----------------DMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKF 207
                  +                 M   L             G T L  AA +     F
Sbjct: 178 ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237

Query: 208 SYTLSVGISI 217
            + L    S 
Sbjct: 238 RHILQREFSG 247

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 1e-07
 Identities = 26/155 (16%), Positives = 41/155 (26%), Gaps = 36/155 (23%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
               L      G  + +  L+E   L  +     +S                 T L +AV
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLE--YLRWNSKYLTDS--------AYTEGSTGKTCLMKAV 51

Query: 133 CHQN---VDVVEILTKEDPDYPY----------SANNDGKTPLYMAADYRSSDMVLALLE 179
            +        +  L + D D                  G + L++A + RS   V  L+E
Sbjct: 52  LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE 111

Query: 180 N-------------STSASHEGPNGKTALHAAAMK 201
           N                       G+  L  AA  
Sbjct: 112 NGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 76.7 bits (190), Expect = 4e-18
 Identities = 25/130 (19%), Positives = 41/130 (31%), Gaps = 19/130 (14%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           +    L  AA  G    VR L     L +                    N+   TAL   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRL-----LHRELVH------------PDALNRFGKTALQVM 43

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
               +  +   L K+    P   +  G +P++ AA     D +  L+E+    +     G
Sbjct: 44  -MFGSTAIALELLKQGAS-PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101

Query: 192 KTALHAAAMK 201
              +H A  +
Sbjct: 102 ALPIHLAVQE 111

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 76.3 bits (189), Expect = 7e-18
 Identities = 47/192 (24%), Positives = 67/192 (34%), Gaps = 60/192 (31%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT-------AKTKN--TILHVNIRSKESENASTKFV 55
           L  AAA G+++         ++RLL        A  +   T L V          ST   
Sbjct: 6   LSGAAARGDVQ--------EVRRLLHRELVHPDALNRFGKTALQV------MMFGSTAIA 51

Query: 56  EEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELES 108
                    LL Q    N +   G +P+H AA+ G  D ++VLVE  A +    N     
Sbjct: 52  L-------ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV----NV---- 96

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAAD 167
                       +      +H AV   +  VV  L  E D       +  G TPL +A  
Sbjct: 97  -----------PDGTGALPIHLAVQEGHTAVVSFLAAESDLH---RRDARGLTPLELALQ 142

Query: 168 YRSSDMVLALLE 179
             + D+V  L  
Sbjct: 143 RGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 75.1 bits (186), Expect = 2e-17
 Identities = 27/146 (18%), Positives = 51/146 (34%), Gaps = 30/146 (20%)

Query: 64  LLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARH 115
            LL +     +A    G+T L V   FG + I   L+++ A                   
Sbjct: 20  RLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS------------------ 60

Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL 175
              + +    + +H+A     +D +++L +   D     +  G  P+++A     + +V 
Sbjct: 61  -PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVS 118

Query: 176 ALLENSTSASHEGPNGKTALHAAAMK 201
            L   S         G T L  A  +
Sbjct: 119 FLAAES-DLHRRDARGLTPLELALQR 143

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 80.4 bits (199), Expect = 5e-18
 Identities = 44/217 (20%), Positives = 68/217 (31%), Gaps = 50/217 (23%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKN--TILHVNIRSKESENASTKFVE 56
           L  A  A            ++  L+      T   K+  + LH          A+     
Sbjct: 170 LMLAVLARRRR--------LVAYLMKAGADPTIYNKSERSALHQ---------AAANRDF 212

Query: 57  EILEKCPLLLLQ------VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELE 107
            ++     +L        +      G T L + A     D V      AKLL      +E
Sbjct: 213 GMMV---YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS----AKLL------VE 259

Query: 108 SGI---RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYM 164
            G                +  TALH A    N+ +V+ L  E        + DGKTP+ +
Sbjct: 260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIML 319

Query: 165 AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           AA     ++V+ L++   S         TA   A   
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 356

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 31/173 (17%), Positives = 58/173 (33%), Gaps = 22/173 (12%)

Query: 59  LEKCPLLLLQ---VNAK--GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
                 +  +   +       T LH  A    ++    L     ++    E + +G    
Sbjct: 106 YAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDL-----IVHEAKECIAAGAD-- 158

Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
              +   + ++NT L  AV  +   +V  L K   D P   N   ++ L+ AA  R   M
Sbjct: 159 ---VNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGM 214

Query: 174 VLALLENSTSASH---EGPNGKTALHAAAMKSYFGKFS---YTLSVGISILIS 220
           ++ +L ++           NG TAL   A      + +     +  G  +   
Sbjct: 215 MVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.9 bits (190), Expect = 7e-17
 Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 66/225 (29%)

Query: 8   AAAAGNLEPFKDIAREVIKRLL-------TAKTKNTILHVNIRSKESENASTKFVEEILE 60
             AAG+          + + +          +   T+LH       + N+S +  E+++ 
Sbjct: 100 TEAAGSYA--------ITEPITRESVNIIDPRHNRTVLHW-----IASNSSAEKSEDLIV 146

Query: 61  KCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRT 112
                 +     VNA      TPL +A       +V  L++  A                
Sbjct: 147 HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD--------------- 191

Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEIL-----TKEDPDYPYSANNDGKTPLYMAAD 167
                 + NK + +ALH+A  +++  ++  +      K D +     + +G T L + A 
Sbjct: 192 ----PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE---ELDRNGMTALMIVAH 244

Query: 168 YRSSDMVLA---LLE-----NSTSASHEGP---NGKTALHAAAMK 201
               D V +   L+E     +   A+ +      G+TALH AA  
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 23/153 (15%), Positives = 42/153 (27%), Gaps = 28/153 (18%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKE--------- 123
              P       G+  +        ++     E          H     +           
Sbjct: 61  SLYPNPQGYGNGNDFLGDFNHTNLQIP---TEPEPES-PIKLHTEAAGSYAITEPITRES 116

Query: 124 --------KNTALHEAVCHQNVDVVEILTKEDPDYPYSA-------NNDGKTPLYMAADY 168
                     T LH    + + +  E L   +     +A       + D  TPL +A   
Sbjct: 117 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA 176

Query: 169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           R   +V  L++     +    + ++ALH AA  
Sbjct: 177 RRRRLVAYLMKAGADPTIYNKSERSALHQAAAN 209

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.4 bits (160), Expect = 8e-13
 Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 60/201 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT---------AKTKN--TILHVNIRSKESENASTK 53
           L +AAA  +          ++  +L             +N  T L +          +  
Sbjct: 203 LHQAAANRDFG--------MMVYMLNSTKLKGDIEELDRNGMTALMI---------VAHN 245

Query: 54  FVEEILEKCPLLLLQ---VNAK-----------GETPLHVAAKFGHSDIVRVLVERAKLL 99
              + +    LL+ +   V+             G T LH AA+  +  IV+ LV      
Sbjct: 246 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV------ 299

Query: 100 QHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK 159
                  E G           +++  T +  A     ++VV  L ++      + +    
Sbjct: 300 ------GEKGSN-----KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDH 347

Query: 160 TPLYMAADYRSSDMVLALLEN 180
           T   +A      ++V      
Sbjct: 348 TARQLAQANNHHNIVDIFDRC 368

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 19/153 (12%), Positives = 36/153 (23%), Gaps = 30/153 (19%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
           Q     +  L  A+  G+                 NE                       
Sbjct: 32  QSITSSQHSLLEASYDGYIKRQ------------RNEL---------------QHYSLYP 64

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
             +   + N  + +         P     +    L+  A   S  +   +   S +   +
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQI-PTEPEPESPIKLHTEA-AGSYAITEPITRESVNII-D 121

Query: 188 GPNGKTALHAAAMKSYFGKFSYTLSVGISILIS 220
             + +T LH  A  S   K    +       I+
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 154

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 39/94 (41%), Gaps = 27/94 (28%)

Query: 64  LLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARH 115
            L+ +     + +   G+TP+ +AA+ G  ++V  L+++ A                   
Sbjct: 297 YLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------------------ 338

Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 149
            +   +   +TA   A  + + ++V+I  +  P+
Sbjct: 339 -VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 9/85 (10%), Positives = 16/85 (18%), Gaps = 10/85 (11%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
                +      +L EA     +                  +    P        +  + 
Sbjct: 28  RKNHQSITSSQHSLLEASYDGYIKRQRNE----------LQHYSLYPNPQGYGNGNDFLG 77

Query: 175 LALLENSTSASHEGPNGKTALHAAA 199
                N    +   P     LH  A
Sbjct: 78  DFNHTNLQIPTEPEPESPIKLHTEA 102

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.5 bits (197), Expect = 5e-18
 Identities = 28/135 (20%), Positives = 51/135 (37%), Gaps = 30/135 (22%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           +N     G T LH A    + D+V+ LVE  A +    N+                + E 
Sbjct: 66  INYANVDGLTALHQACIDDNVDMVKFLVENGANI----NQP---------------DNEG 106

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
              LH A     +D+ E L  +      + N++G TPL +A +    +++   +      
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEV------ 159

Query: 185 SHEGPNGKTALHAAA 199
           + +G + + A     
Sbjct: 160 NRQGVDIEAARKEEE 174

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 7e-16
 Identities = 28/132 (21%), Positives = 44/132 (33%), Gaps = 20/132 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           +AK +    +    G    +   V +                  R   ++   +      
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVK------------------RKKTKVKFDD-GAVFL 45

Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
            A    + + V  L +   D    AN DG T L+ A    + DMV  L+EN  + +    
Sbjct: 46  AACSSGDTEEVLRLLERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

Query: 190 NGKTALHAAAMK 201
            G   LHAAA  
Sbjct: 105 EGWIPLHAAASC 116

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.3 bits (181), Expect = 9e-16
 Identities = 40/211 (18%), Positives = 63/211 (29%), Gaps = 61/211 (28%)

Query: 8   AAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVEEIL 59
           A ++G+ E         + RLL           +  T LH          A      +++
Sbjct: 47  ACSSGDTE--------EVLRLLERGADINYANVDGLTALHQ---------ACIDDNVDMV 89

Query: 60  EKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRT 112
           +    L+     +N     G  PLH AA  G+ DI   L+ + A +              
Sbjct: 90  K---FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV----GAV------- 135

Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
                   N E +T L  A      ++++               D +            D
Sbjct: 136 --------NSEGDTPLDIAEEEAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRD 180

Query: 173 MVLALLENSTSASHEGPNGKTALHAAAMKSY 203
               L     +      +G TALH AA K Y
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 23/137 (16%)

Query: 68  QVNAK--GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           +   K         A   G ++ V  L+ER A                    I   N + 
Sbjct: 33  KTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-------------------INYANVDG 73

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
            TALH+A    NVD+V+ L +   +     +N+G  PL+ AA     D+   L+      
Sbjct: 74  LTALHQACIDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHV 132

Query: 185 SHEGPNGKTALHAAAMK 201
                 G T L  A  +
Sbjct: 133 GAVNSEGDTPLDIAEEE 149

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 42/220 (19%), Positives = 69/220 (31%), Gaps = 51/220 (23%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA+ G L+        + + L++      A      T L +         A  + +E
Sbjct: 110 LHAAASCGYLD--------IAEYLISQGAHVGAVNSEGDTPLDI---------AEEEAME 152

Query: 57  EILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM 116
           E+L+     + +     E       +    D  + L        H N             
Sbjct: 153 ELLQ---NEVNRQGVDIEAARKEEERIMLRDARQWLNS-----GHIN------------- 191

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
                K   TALH A      +V+++L +   D     + DG TPL+ AA +   +    
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 177 LLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS 216
           L+EN          G+TA   A          Y   +   
Sbjct: 251 LVENLCDMEAVNKVGQTAFDVADEDIL----GYLEELQKK 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 22/166 (13%), Positives = 51/166 (30%), Gaps = 39/166 (23%)

Query: 23  EVIKRLLTAK--TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ---VNAK---GE 74
           E+++  +  +                        + +  +    L             G 
Sbjct: 153 ELLQNEVNRQGVDIEAARK---------EEERIMLRDARQ---WLNSGHINDVRHAKSGG 200

Query: 75  TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
           T LHVAA  G+++++++L++                      + + + +  T LH A   
Sbjct: 201 TALHVAAAKGYTEVLKLLIQA-------------RYD-----VNIKDYDGWTPLHAAAHW 242

Query: 135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
              +   IL +   D   + N  G+T   +A +     +     + 
Sbjct: 243 GKEEACRILVENLCD-MEAVNKVGQTAFDVADEDILGYLEELQKKQ 287

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 2/85 (2%)

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA 176
           ++M + ++           +   +E    +          D       A     ++ VL 
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKK--TKVKFDDGAVFLAACSSGDTEEVLR 58

Query: 177 LLENSTSASHEGPNGKTALHAAAMK 201
           LLE     ++   +G TALH A + 
Sbjct: 59  LLERGADINYANVDGLTALHQACID 83

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 1e-05
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 32/105 (30%)

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHM 116
           LL+Q    VN K   G TPLH AA +G  +  R+LVE                       
Sbjct: 217 LLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD------------------- 257

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
           +   NK   TA   A       + E+  K++       +++ +  
Sbjct: 258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNLL-----HSEKREK 297

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 75.5 bits (187), Expect = 7e-18
 Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 25/132 (18%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           G TPLH+AA+ GH ++V++L+E  A +    N                 +K   T LH A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADV----NA---------------KDKNGRTPLHLA 42

Query: 132 VCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP 189
             + +++VV++L +   D +   + + +G+TPL++AA     ++V  LLE     + +  
Sbjct: 43  ARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

Query: 190 NGKTALHAAAMK 201
           NG+T LH AA  
Sbjct: 100 NGRTPLHLAARN 111

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.4 bits (166), Expect = 8e-15
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 24/116 (20%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VNAK   G TPLH+AA+ GH ++V++L+E  A +    N                 +K  
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV----NA---------------KDKNG 68

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
            T LH A  + +++VV++L +   D   + + +G+TPL++AA     ++V  LLE 
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           +G+TPL++AA     ++V  LLE     + +  NG+T LH AA  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 45

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.7 bits (192), Expect = 1e-17
 Identities = 28/155 (18%), Positives = 54/155 (34%), Gaps = 26/155 (16%)

Query: 69  VNAK--GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKN 125
           V         L  ++  G  D+V+ ++                          + N E  
Sbjct: 31  VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD-------------------PSLPNDEGI 71

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE---NST 182
           TALH AVC  + ++V+ L +   +   +A++DG TPL+ AA   +  +   L+E      
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 183 SASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
           + ++              + Y     +   V   +
Sbjct: 131 AMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 165

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.3 bits (178), Expect = 1e-15
 Identities = 22/130 (16%), Positives = 43/130 (33%), Gaps = 22/130 (16%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           G+  L    +          +    ++                      N      L ++
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRV----KF----------------NPLPLALLLDS 44

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
                 D+V+ +  E  D P   N++G T L+ A     +++V  L++   + +    +G
Sbjct: 45  SLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDG 103

Query: 192 KTALHAAAMK 201
            T LH AA  
Sbjct: 104 WTPLHCAASC 113

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.0 bits (172), Expect = 7e-15
 Identities = 35/211 (16%), Positives = 62/211 (29%), Gaps = 53/211 (25%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  ++  G  +        +++R++              T LH         NA      
Sbjct: 41  LLDSSLEGEFD--------LVQRIIYEVDDPSLPNDEGITALH---------NAVCAGHT 83

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
           EI++    L+     VNA    G TPLH AA   +  + + LVE  A +         S 
Sbjct: 84  EIVK---FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV----FAMTYSD 136

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
           ++TA                E +        + L           N      L+     +
Sbjct: 137 MQTA------------ADKCEEMEEGYTQCSQFLYGVQEK-MGIMNKGVIYALWDYE-PQ 182

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAM 200
           + D +     +  +  H     +     A +
Sbjct: 183 NDDELPMKEGDCMTIIHREDEDEIEWWWARL 213

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 67.6 bits (166), Expect = 5e-14
 Identities = 24/141 (17%), Positives = 40/141 (28%), Gaps = 25/141 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
            +     G T LH A   GH++IV+ LV+    +    N                 + + 
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV----NA---------------ADSDG 103

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK--TPLYMAADYRSSDMVLALLENST 182
            T LH A    NV V + L +          +D +         +   +     L     
Sbjct: 104 WTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 163

Query: 183 SASHEGPNGKTALHAAAMKSY 203
                      AL     ++ 
Sbjct: 164 KMGIMNKGVIYALWDYEPQND 184

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 5/62 (8%), Positives = 13/62 (20%), Gaps = 1/62 (1%)

Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI 215
             G+  L               + +        P     L  ++++  F      +    
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEVD 61

Query: 216 SI 217
             
Sbjct: 62  DP 63

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 76.3 bits (189), Expect = 2e-17
 Identities = 32/143 (22%), Positives = 58/143 (40%), Gaps = 25/143 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN 125
           +N +    ++P   A   G ++I+  +++      H   +L              N+   
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLK------HATPDLNK-----------HNRYGG 107

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS-----DMVLALLEN 180
            AL  A    ++D V++L ++  +     N+ G T L  A   R       D+V  L+EN
Sbjct: 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN 167

Query: 181 STSASHEGPNGKTALHAAAMKSY 203
               S +  +G+TA+  A  K Y
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.8 bits (185), Expect = 6e-17
 Identities = 29/144 (20%), Positives = 47/144 (32%), Gaps = 26/144 (18%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           V+     G TPL++A      +I + L++R A                    I + N   
Sbjct: 32  VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD-------------------INLQNSIS 72

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
           ++    A      +++  + K         N  G   L  AA+    D V  LLE+    
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-GRE 131

Query: 185 S--HEGPNGKTALHAAAMKSYFGK 206
               +   G TAL  A       +
Sbjct: 132 DIDFQNDFGYTALIEAVGLREGNQ 155

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 65.5 bits (161), Expect = 2e-13
 Identities = 38/197 (19%), Positives = 67/197 (34%), Gaps = 58/197 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A    ++E        + K L+        +     +             A  +   
Sbjct: 43  LNIAVHNNDIE--------IAKALIDRGADINLQNSISDSPYLY---------AGAQGRT 85

Query: 57  EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG 109
           EIL     +L      +N     G   L  AA+ GH D V++L+E         E+++  
Sbjct: 86  EILA---YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE------DGREDIDF- 135

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQN-----VDVVEILTKEDPDYPYSANNDGKTPLYM 164
                      N    TAL EAV  +       D+V++L +   D     +N G+T +  
Sbjct: 136 ----------QNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAMDY 184

Query: 165 AADYRSSDMVLALLENS 181
           A     +++   L + +
Sbjct: 185 ANQKGYTEISKILAQYN 201

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 2e-10
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
           M   E    L  A       V EIL           + +G TPL +A      ++  AL+
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALI 59

Query: 179 ENSTSASHEGPNGKTALHAAAMK 201
           +     + +     +    A  +
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQ 82

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.3 bits (184), Expect = 4e-17
 Identities = 28/136 (20%), Positives = 49/136 (36%), Gaps = 23/136 (16%)

Query: 69  VNAK--GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKN 125
                 G +PLH+AA++GH     VL+          +                  K   
Sbjct: 28  FTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR----DA---------------RTKVDR 68

Query: 126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
           T LH A    + ++VE+L K   D   + +    T L+ A ++   ++V  L++      
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

Query: 186 HEGPNGKTALHAAAMK 201
            +    KTA   +   
Sbjct: 128 TQSKFCKTAFDISIDN 143

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 74.0 bits (183), Expect = 4e-17
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 20/129 (15%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
               L  AA+ G  D VR+L             + +G          T+    + LH A 
Sbjct: 2   LGKKLLEAARAGQDDEVRIL-------------MANGAPFT------TDWLGTSPLHLAA 42

Query: 133 CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK 192
            + +    E+L +       +     +TPL+MAA    +++V  LL++    + +     
Sbjct: 43  QYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM 101

Query: 193 TALHAAAMK 201
           TALH A   
Sbjct: 102 TALHWATEH 110

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 70.5 bits (174), Expect = 1e-15
 Identities = 42/184 (22%), Positives = 71/184 (38%), Gaps = 54/184 (29%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT-----AKTKN--TILHVNIRSKESENASTKFVEE 57
           L +AA AG  +         ++ L+             + LH+      ++       E 
Sbjct: 6   LLEAARAGQDD--------EVRILMANGAPFTTDWLGTSPLHL-----AAQYGHFSTTE- 51

Query: 58  ILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGI 110
                 +LL      +A+     TPLH+AA  GH++IV VL++  A              
Sbjct: 52  ------VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD------------- 92

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS 170
                 +   +  K TALH A  H + +VVE+L K   D  ++ +   KT   ++ D  +
Sbjct: 93  ------VNAKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGN 145

Query: 171 SDMV 174
            D+ 
Sbjct: 146 EDLA 149

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 37/154 (24%), Positives = 59/154 (38%), Gaps = 54/154 (35%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA  G+            + LL       A+TK   T LH+         A+++   
Sbjct: 38  LHLAAQYGHFS--------TTEVLLRAGVSRDARTKVDRTPLHM---------AASEGHA 80

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
            I+E   +LL     VNAK     T LH A +  H ++V +L++  A +    +      
Sbjct: 81  NIVE---VLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV----HT----- 128

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL 143
                      +K   TA   ++ + N D+ EIL
Sbjct: 129 ----------QSKFCKTAFDISIDNGNEDLAEIL 152

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 73.6 bits (182), Expect = 4e-17
 Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 30/140 (21%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           ++      +  L  AA  G  + VR L+E  A                        N+  
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGAD-------------------PNALNRFG 45

Query: 125 NTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKT-PLYMAADYRSSDMVLALLENS 181
              +       +  V E+L     +P+    A+    T P++ AA     D ++ L    
Sbjct: 46  RRPIQVM-MMGSAQVAELLLLHGAEPN---CADPATLTRPVHDAAREGFLDTLVVLHRAG 101

Query: 182 TSASHEGPNGKTALHAAAMK 201
                    G+  +  A  +
Sbjct: 102 ARLDVCDAWGRLPVDLAEEQ 121

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 65.9 bits (162), Expect = 4e-14
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKE 123
             NA    G  P+ V    G + +  +L+   A+                       +  
Sbjct: 37  DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-------------------PNCADPA 76

Query: 124 KNT-ALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
             T  +H+A     +D + +L +         +  G+ P+ +A +    D+   L   
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 38/144 (26%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VNA+   G T L V    G+ +I R L+ R A      +                 ++  
Sbjct: 31  VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP----DL---------------KDRTG 70

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
              +H+A     +D ++ L +   D     +N+G  PL++AA      +V  L+      
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLV------ 123

Query: 185 SHEGPN-------GKTALHAAAMK 201
            H   N       G TA   A + 
Sbjct: 124 KHTASNVGHRNHKGDTACDLARLY 147

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 72.4 bits (179), Expect = 3e-16
 Identities = 25/131 (19%), Positives = 39/131 (29%), Gaps = 22/131 (16%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHE 130
                L  AA  G  + +  L++                       +   N    TAL  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVN-------------------VNAQNGFGRTALQV 44

Query: 131 AVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN 190
                N ++   L     + P   +  G   ++ AA     D +  LLE     + E   
Sbjct: 45  MKLG-NPEIARRLLLRGAN-PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE 102

Query: 191 GKTALHAAAMK 201
           G   LH AA +
Sbjct: 103 GNLPLHLAAKE 113

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 71.3 bits (176), Expect = 5e-16
 Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 55/191 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AAA G+LE         +  LL       A+     T L V       +  + +   
Sbjct: 9   LASAAARGDLE--------QLTSLLQNNVNVNAQNGFGRTALQV------MKLGNPEIAR 54

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
                   LLL+    + K   G   +H AA+ G  D ++ L+E  A +    N E    
Sbjct: 55  -------RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV----NIE---- 99

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                      + E N  LH A    ++ VVE L K         N+ G T   +A  Y 
Sbjct: 100 -----------DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148

Query: 170 SSDMVLALLEN 180
            +++V  +  N
Sbjct: 149 RNEVVSLMQAN 159

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.9 bits (175), Expect = 3e-16
 Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 22/130 (16%)

Query: 69  VNAK-GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNT 126
             +K G TPLH AAK GH++ V+ L+ + A                    +   +K+ NT
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-------------------VNARSKDGNT 44

Query: 127 ALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH 186
            LH A  + + ++V++L  +  D   + + DG TP ++A      ++V  L       + 
Sbjct: 45  PLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

Query: 187 EGPNGKTALH 196
                    H
Sbjct: 104 RSWGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 58.2 bits (142), Expect = 2e-11
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 1/81 (1%)

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           +K+ NT LH A  + + + V+ L  +  D   + + DG TPL++AA    +++V  LL  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 181 STSASHEGPNGKTALHAAAMK 201
               +    +G T  H A   
Sbjct: 65  GADVNARSKDGNTPEHLAKKN 85

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 5e-16
 Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 39/174 (22%)

Query: 32  KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDI 88
           K    +  +            K + + L+         N +     TPL VA   G  + 
Sbjct: 6   KNGEIVEKI---------KDEKSINQNLD------FLRNYRDSYNRTPLMVACMLGMENA 50

Query: 89  VRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED 147
           +  LVE   K                   +   + E +TAL  AV +  + + E L  + 
Sbjct: 51  IDKLVENFDK-------------------LEDKDIEGSTALIWAVKNNRLGIAEKLLSKG 91

Query: 148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
            +   + +  GKTPL  +  +  S+M   LLE+  + +     G+T L  A+  
Sbjct: 92  SN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKY 144

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 72.0 bits (178), Expect = 7e-16
 Identities = 34/195 (17%), Positives = 61/195 (31%), Gaps = 55/195 (28%)

Query: 23  EVIKRLLTAKTKN--TILHVNIRSKESENASTKFVEEILEKCPLLLLQ---VNAK---GE 74
           + +  L   +     T L V              ++        L+     +  K   G 
Sbjct: 22  QNLDFLRNYRDSYNRTPLMV-----ACMLGMENAID-------KLVENFDKLEDKDIEGS 69

Query: 75  TPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVC 133
           T L  A K     I   L+ + + +    N                 +    T L  ++ 
Sbjct: 70  TALIWAVKNNRLGIAEKLLSKGSNV----NT---------------KDFSGKTPLMWSII 110

Query: 134 HQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN--- 190
               ++   L +   +     N +G+TPL +A+ Y  S++V  LLE        G +   
Sbjct: 111 FGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLEL-------GADISA 162

Query: 191 ----GKTALHAAAMK 201
               G TA  +A + 
Sbjct: 163 RDLTGLTAEASARIF 177

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 7e-13
 Identities = 39/190 (20%), Positives = 61/190 (32%), Gaps = 55/190 (28%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A   G            I +L+        K     T L           A      
Sbjct: 39  LMVACMLGMEN--------AIDKLVENFDKLEDKDIEGSTALIW---------AVKNNRL 81

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
            I E    LL +   VN K   G+TPL  +  FG+S++   L+E  A +    N+     
Sbjct: 82  GIAE---KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANV----ND----- 129

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                      N E  T L  A  +   ++V+ L +   D   + +  G T    A  + 
Sbjct: 130 ----------RNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFG 178

Query: 170 SSDMVLALLE 179
             +++    E
Sbjct: 179 RQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 63.6 bits (156), Expect = 7e-13
 Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 25/133 (18%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           ++  GE    +  +   +  +  L    +                       +    T L
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLRN-YR-----------------------DSYNRTPL 39

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
             A      + ++ L +         + +G T L  A       +   LL   ++ + + 
Sbjct: 40  MVACMLGMENAIDKLVENFDK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKD 98

Query: 189 PNGKTALHAAAMK 201
            +GKT L  + + 
Sbjct: 99  FSGKTPLMWSIIF 111

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 21/107 (19%), Positives = 35/107 (32%), Gaps = 34/107 (31%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  +   G  E        +   LL        +     T L V         AS     
Sbjct: 105 LMWSIIFGYSE--------MSYFLLEHGANVNDRNLEGETPLIV---------ASKYGRS 147

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAK 97
           EI++    LL     ++A+   G T    A  FG  +++++  E  +
Sbjct: 148 EIVK---KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRR 191

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 71.4 bits (176), Expect = 6e-16
 Identities = 22/141 (15%), Positives = 43/141 (30%), Gaps = 35/141 (24%)

Query: 68  QVNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKE 123
             NA    G  P+ V    G + +  +L+   A+                       +  
Sbjct: 37  NPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAE-------------------PNCADPA 76

Query: 124 KNT-ALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
             T  +H+A     +D + +L +     D     +  G+ P+ +A +    D+   L   
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLD---VRDAWGRLPVDLAEELGHRDVARYLRAA 133

Query: 181 STSASHEGPNGKTALHAAAMK 201
           +      G  G       A +
Sbjct: 134 AG-----GTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 34/119 (28%)

Query: 65  LLLQ----VNAKGE----TPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARH 115
           LLL      N         P+H AA+ G  D + VL    A+                  
Sbjct: 62  LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGAR------------------ 103

Query: 116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
            + + +      +  A    + DV   L         +    G     + A    SD+ 
Sbjct: 104 -LDVRDAWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 49.8 bits (120), Expect = 5e-08
 Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 7/84 (8%)

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
            +     L  A     V+ V  L +   +P+   + N+ G+ P+ +     S+ +   LL
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPN---APNSYGRRPIQVMM-MGSARVAELLL 64

Query: 179 ENSTSASHEGPNGKT-ALHAAAMK 201
            +    +   P   T  +H AA +
Sbjct: 65  LHGAEPNCADPATLTRPVHDAARE 88

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 45.2 bits (108), Expect = 2e-06
 Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 30/84 (35%)

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
           +L +    ++ +   G  P+ +A + GH D+ R L   A                     
Sbjct: 96  VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA--------------------- 134

Query: 118 RMTNKEKNTALHEAVCHQNVDVVE 141
                  +            D+ +
Sbjct: 135 --GGTRGSNHARIDAAEGPSDIPD 156

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.0 bits (179), Expect = 6e-16
 Identities = 38/188 (20%), Positives = 66/188 (35%), Gaps = 37/188 (19%)

Query: 36  TILHVNIRSKESENASTKFVEEILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIV 89
            I ++         A +  ++E+ E    +L              T LH A   GH++IV
Sbjct: 9   MICNL---------AYSGKLDELKE---RILADKSLATRTDQDSRTALHWACSAGHTEIV 56

Query: 90  RVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 149
             L++              G+      +   +    + LH A      ++V+ L  +   
Sbjct: 57  EFLLQL-------------GVP-----VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH 98

Query: 150 YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSY 209
              + N +G TPL+ AA     ++ + LLE   +   +     TA+H AA K        
Sbjct: 99  -VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHI 157

Query: 210 TLSVGISI 217
            L    S 
Sbjct: 158 LLFYKAST 165

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.6 bits (178), Expect = 8e-16
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 21/146 (14%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
                ++A      ++   ++   +                       T+++  TALH A
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLA----TR---------------TDQDSRTALHWA 47

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
               + ++VE L +         ++ G +PL++AA     ++V ALL      +    NG
Sbjct: 48  CSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNG 106

Query: 192 KTALHAAAMKSYFGKFSYTLSVGISI 217
            T LH AA K+        L  G + 
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANP 132

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 9e-15
 Identities = 51/221 (23%), Positives = 80/221 (36%), Gaps = 49/221 (22%)

Query: 8   AAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVEEIL 59
            A +G L+       E+ +R+L          ++  T LH          A +    EI+
Sbjct: 13  LAYSGKLD-------ELKERILADKSLATRTDQDSRTALHW---------ACSAGHTEIV 56

Query: 60  EKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
           E    LL     VN K   G +PLH+AA  G  +IV+ L+ +   +   N+   + +  A
Sbjct: 57  E---FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113

Query: 114 RHM---------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDG 158
                                 +    TA+H A    N+ +V IL           + +G
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEG 172

Query: 159 KTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA 199
            TPL++A D    +    L+    S   E    KT L  A 
Sbjct: 173 NTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 44/202 (21%), Positives = 74/202 (36%), Gaps = 46/202 (22%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  A +AG+ E        +++ LL        K     + LH+         A++   +
Sbjct: 44  LHWACSAGHTE--------IVEFLLQLGVPVNDKDDAGWSPLHI---------AASAGXD 86

Query: 57  EILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
           EI++   +    VNA    G TPLH AA     +I  +L+E       ++    + +  A
Sbjct: 87  EIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRA 146

Query: 114 RHM---------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDG 158
                               + + E NT LH A   + V+  + L  +     Y  N + 
Sbjct: 147 AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEE 205

Query: 159 KTPLYMAADYRSSDMVLALLEN 180
           KTPL +A       ++L  L  
Sbjct: 206 KTPLQVAKGGL--GLILKRLAE 225

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 32/142 (22%)

Query: 68  QVNAK------GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMT 120
                          L  AA  G  ++V+  V+                           
Sbjct: 10  SPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND-------------------PSQP 50

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
           N+E  TALH A+C  N  +V+ L     + +   S ++ G TPL+ AA    + + +AL+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVN---SPDSHGWTPLHCAASCNDTVICMALV 107

Query: 179 ENSTSASHEGPN-GKTALHAAA 199
           ++  +      + G TA     
Sbjct: 108 QHGAAIFATTLSDGATAFEKCD 129

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 70.8 bits (174), Expect = 4e-15
 Identities = 25/139 (17%), Positives = 38/139 (27%), Gaps = 25/139 (17%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
            +     G T LH A    +  IV  L+   A +    N                 +   
Sbjct: 47  PSQPNEEGITALHNAICGANYSIVDFLITAGANV----NS---------------PDSHG 87

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSS--DMVLALLENST 182
            T LH A    +  +   L +       +  +DG T       YR    D    L +   
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147

Query: 183 SASHEGPNGKTALHAAAMK 201
           S          AL   + +
Sbjct: 148 SMGLMNSGAVYALWDYSAE 166

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 69.6 bits (171), Expect = 8e-15
 Identities = 39/214 (18%), Positives = 63/214 (29%), Gaps = 57/214 (26%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L  AA  G LE        V+++ +          +   T LH         NA      
Sbjct: 25  LLDAALTGELE--------VVQQAVKEMNDPSQPNEEGITALH---------NAICGANY 67

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESG 109
            I++    L+     VN+    G TPLH AA    + I   LV+  A +           
Sbjct: 68  SIVD---FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAI----FA----- 115

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQN--VDVVEILTKEDPDYPYSANNDGKTPLYMAAD 167
                     T  +  TA  +   ++    D    L   +       N+     L+  + 
Sbjct: 116 ---------TTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYS- 164

Query: 168 YRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
               D +      S +        +T    AA+ 
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALH 198

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 17/135 (12%), Positives = 32/135 (23%), Gaps = 27/135 (20%)

Query: 69  VNAK----GETPLHVAAKF--GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNK 122
           + A     G T       +  G++D    L +         + +              N 
Sbjct: 113 IFATTLSDGATAFEKCDPYREGYADCATYLADV-------EQSMGLM-----------NS 154

Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLA-LLENS 181
               AL +    +  D +     E        +   +T  + AA +     V        
Sbjct: 155 GAVYALWDY-SAEFGDELSFREGESVT-VLRRDGPEETDWWWAALHGQEGYVPRNYFGLF 212

Query: 182 TSASHEGPNGKTALH 196
                +    K   H
Sbjct: 213 PRVKPQRSKVKHHHH 227

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 31/197 (15%), Positives = 56/197 (28%), Gaps = 51/197 (25%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTA-------KTKNTILHVNIRSKESENASTKFVEE 57
           +  AA  G  E            L            K+ IL+  +R     N + +   +
Sbjct: 10  VSAAAMLGTYE--------DFLELFEKGYEDKESVLKSNILYDVLR-----NNNDEARYK 56

Query: 58  ILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
           I       L+     + ++   G T      + G +DI     E  K+       LE G 
Sbjct: 57  ISM----FLINKGADIKSRTKEGTTLFFPLFQGGGNDITGT-TELCKIF------LEKGA 105

Query: 111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVE-------ILTKEDPDYPYSANNDGKTPLY 163
                 I    K     + + + +  VD  E       I ++         +  G T L 
Sbjct: 106 D-----ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-LLIKDKWGLTALE 159

Query: 164 MAADYRSSDMVLALLEN 180
                +    +  + + 
Sbjct: 160 FVKRCQKPIALKMMEDY 176

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.1 bits (141), Expect = 8e-11
 Identities = 25/166 (15%), Positives = 38/166 (22%), Gaps = 37/166 (22%)

Query: 70  NAKGE-TPLHVAAKFGHSDIVRVLVERA----------KLLQH--ENEELESGIRTARHM 116
           NA  E   +  AA  G  +    L E+            +L     N   E+  + +  +
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 117 IR------MTNKEKNTALHEAVCHQNVDVVEILTKE--------DPDYPYSANNDGKTPL 162
           I          KE  T           D+               D     +     K  +
Sbjct: 62  INKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT---ALYKPYKIVV 118

Query: 163 YMAADYRSSDMVLALLENSTSASHEGPN-------GKTALHAAAMK 201
           +        D    +       S  G         G TAL      
Sbjct: 119 FKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRC 164

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 69.3 bits (171), Expect = 2e-15
 Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 21/133 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
            +     L  AA+ G  D VR+L+   A +    N                 ++   T L
Sbjct: 11  GSDLGKKLLEAARAGQDDEVRILMANGADV----NA---------------KDEYGLTPL 51

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           + A  H ++++VE+L K   D   + +  G TPL++AA     ++   LL++    + + 
Sbjct: 52  YLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQD 110

Query: 189 PNGKTALHAAAMK 201
             GKTA   +   
Sbjct: 111 KFGKTAFDISIGN 123

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.9 bits (157), Expect = 2e-13
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 24/117 (20%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VNAK   G TPL++A   GH +IV VL++  A +    N                 +   
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV----NA---------------VDAIG 80

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
            T LH A    ++++ E+L K   D   + +  GKT   ++    + D+   L + +
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.5 bits (91), Expect = 3e-04
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 34/104 (32%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L+ A A G+LE        +++ LL       A      T LH+         A+     
Sbjct: 51  LYLATAHGHLE--------IVEVLLKNGADVNAVDAIGFTPLHL---------AAFIGHL 93

Query: 57  EILEKCPLLLLQ---VNAK---GETPLHVAAKFGHSDIVRVLVE 94
           EI E   +LL     VNA+   G+T   ++   G+ D+  +L +
Sbjct: 94  EIAE---VLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 65.8 bits (162), Expect = 1e-14
 Identities = 32/109 (29%), Positives = 56/109 (51%), Gaps = 21/109 (19%)

Query: 73  GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           G TPLH+AA+ GH ++V++L+E  A                    +   +K   T LH A
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGAD-------------------VNAKDKNGRTPLHLA 42

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
             + +++VV++L +   D   + + +G+TPL++AA     ++V  LLE 
Sbjct: 43  ARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 53.1 bits (129), Expect = 7e-10
 Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 5/79 (6%)

Query: 125 NTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
            T LH A  + +++VV++L +   D +   + + +G+TPL++AA     ++V  LLE   
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVN---AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 183 SASHEGPNGKTALHAAAMK 201
             + +  NG+T LH AA  
Sbjct: 60  DVNAKDKNGRTPLHLAARN 78

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 48.9 bits (118), Expect = 3e-08
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 23/79 (29%)

Query: 69  VNAK---GETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEK 124
           VNAK   G TPLH+AA+ GH ++V++L+E  A                    +   +K  
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-------------------VNAKDKNG 68

Query: 125 NTALHEAVCHQNVDVVEIL 143
            T LH A  + +++VV++L
Sbjct: 69  RTPLHLAARNGHLEVVKLL 87

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 38/105 (36%), Positives = 53/105 (50%), Gaps = 36/105 (34%)

Query: 5  LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
          L  AA  G+LE        V+K LL       AK KN  T LH+         A+     
Sbjct: 6  LHLAARNGHLE--------VVKLLLEAGADVNAKDKNGRTPLHL---------AARNGHL 48

Query: 57 EILEKCPLLLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVE 94
          E+++    LLL+    VNAK   G TPLH+AA+ GH ++V++L+E
Sbjct: 49 EVVK----LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMK 201
           +G+TPL++AA     ++V  LLE     + +  NG+T LH AA  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 45

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 21/110 (19%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
           + +     L  AA+ G  D VR+L+   A                    +   +K  +T 
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGAD-------------------VAAKDKNGSTP 60

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
           LH A  + +++VV++L +   D   + +  GKT   ++ D  + D+   L
Sbjct: 61  LHLAARNGHLEVVKLLLEAGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 24/125 (19%)

Query: 80  AAKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVD 138
            +   H      LV R + +                        +    L EA      D
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM----------------------GSDLGKKLLEAARAGQDD 38

Query: 139 VVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA 198
            V IL     D   + + +G TPL++AA     ++V  LLE       +   GKTA   +
Sbjct: 39  EVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS 97

Query: 199 AMKSY 203
                
Sbjct: 98  IDNGN 102

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 31/205 (15%), Positives = 68/205 (33%), Gaps = 25/205 (12%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLT------AKTKN--TILHVNIRSKESENASTKFVE 56
           L    +  NLE        ++K L+              + L   ++S    N  +   E
Sbjct: 135 LHWLTSIANLE--------LVKHLVKHGSNRLYGDNMGESCLVKAVKS--VNNYDSGTFE 184

Query: 57  EILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM 116
            +L+     L+  ++   T LH               +      + +  +   ++     
Sbjct: 185 ALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK-----YYLDILMGWIVKKQNRP 239

Query: 117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--SANNDGKTPLYMAADYRSSDMV 174
           I+    EK +  ++    +   ++E L  +        + +++G T L +AA   +  +V
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 299

Query: 175 LALLENSTSASHEGPNGKTALHAAA 199
            ALL+          +G   +   A
Sbjct: 300 DALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.5 bits (128), Expect = 9e-09
 Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 37/187 (19%)

Query: 50  ASTKFVEEILEKCPLLLLQVNAK----GETPLHVAAKFGHSDIVRVLVERAKLLQHENEE 105
           +    ++E+ +  P   L +N      G TPLH      + ++V+ LV+           
Sbjct: 104 SFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH---------- 153

Query: 106 LESGIRTARHMIRMTNKEKNTALHEAVCHQN---VDVVEILTKEDPDYPYSANNDGKTPL 162
              G           +    + L +AV   N       E L           ++  +T L
Sbjct: 154 ---GSN-----RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTIL 205

Query: 163 YMAADYRSSD------------MVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYT 210
           +                     ++  +++        G N K +                
Sbjct: 206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILEN 265

Query: 211 LSVGISI 217
           L +   I
Sbjct: 266 LDLKWII 272

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 7/137 (5%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
            +  GE+ L  A K  ++            L       +S  RT  H I +T+       
Sbjct: 160 GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG--- 216

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS--- 185
             A     +D++     +  + P  +  + K       +    D +L  L+     +   
Sbjct: 217 CSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML 276

Query: 186 -HEGPNGKTALHAAAMK 201
             +  NG T L+ AA  
Sbjct: 277 NAQDSNGDTCLNIAARL 293

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA------DYRSSDM 173
            ++  NT LH      N+++V+ L K   +     +N G++ L  A       D  + + 
Sbjct: 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEA 185

Query: 174 VLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF 221
           +L  L             +T LH   + S     S      + IL+ +
Sbjct: 186 LLDYLYPCLILEDS--MNRTILHHIIITSGMTGCSAAAKYYLDILMGW 231

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 1/105 (0%)

Query: 97  KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVD-VVEILTKEDPDYPYSAN 155
           +LL  E +E+ + +              N           +  V +       +     +
Sbjct: 69  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 128

Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAM 200
             G TPL+      + ++V  L+++ ++  +    G++ L  A  
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 173

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 34/228 (14%), Positives = 62/228 (27%), Gaps = 58/228 (25%)

Query: 2   DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKE--------SENASTK 53
           +   F AA  G          + +  LLT+        V +   E        +EN    
Sbjct: 93  EVICFVAAITGCSSAL-----DTLCLLLTSDEI-----VKVIQAENYQAFRLAAENGHLH 142

Query: 54  FVEEILEKCPLLLLQ-VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
            +  + E  P  ++  + A+      +AA+ GH  ++  L E A                
Sbjct: 143 VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM--------- 193

Query: 113 ARHMIRMTNKEKNTALHEAVCHQN-VDVVEILTKEDPDYPYSANN--------------- 156
                     E   A   A   +   +V+  L        Y+  +               
Sbjct: 194 -------IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246

Query: 157 --DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS 202
             +    ++ A    + D V  L+        E   G   L     ++
Sbjct: 247 HVNRLKEMHDAFKLSNPDGVFDLVTK-----SECLQGFYMLRNLIRRN 289

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 54.6 bits (131), Expect = 5e-09
 Identities = 35/218 (16%), Positives = 69/218 (31%), Gaps = 30/218 (13%)

Query: 4   NLFKAAAAGNLEPFKDIA-REVIKRLL--TAKTKNTILHVNIRSKESENASTKFVEEILE 60
           NLF+   + N      ++ +E I   L  T   +     + +        + +   +  +
Sbjct: 28  NLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHK 87

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
           K          K E    VAA  G S  +  L     LL   +E ++           + 
Sbjct: 88  K--------GIKSEVICFVAAITGCSSALDTL----CLLLTSDEIVK-----------VI 124

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS-ANNDGKTPLYMAADYRSSDMVLALLE 179
             E   A   A  + ++ V+  L +  P    +    +      +AA+     ++  L E
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 180 ---NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
                 +A  +  N      AA  + +    ++ L   
Sbjct: 185 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP 222

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 23/161 (14%), Positives = 43/161 (26%), Gaps = 24/161 (14%)

Query: 55  VEEILEKCPLLLLQ-VNAKGETPLHVAA-KFGHSDIVRVLVER----AKLLQHENEELES 108
           +  + E  P      + A+       AA   GH +++  L++     A    HE E  E 
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 238

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY 168
            +           KE + A   +      D+V            S    G   L      
Sbjct: 239 YVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT----------KSECLQGFYMLRNLIRR 288

Query: 169 RSSDMV--------LALLENSTSASHEGPNGKTALHAAAMK 201
               ++        +  ++     +    +    L  A   
Sbjct: 289 NDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRL 329

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 1e-06
 Identities = 13/144 (9%), Positives = 35/144 (24%), Gaps = 12/144 (8%)

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI--RMTNK 122
            LL              ++G   +   +      L+  ++  +         +  +    
Sbjct: 217 FLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECL 276

Query: 123 EKNTALHEAVCHQNVDVVEILT--KEDPDYPYSAN-----NDGKTPLYMAADYRSSDMVL 175
           +    L   +   +  +++ +      P     A       D    L +A    +     
Sbjct: 277 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 336

Query: 176 ALLENSTSASHEGPNGKTALHAAA 199
            LL   +  +    N     +   
Sbjct: 337 LLLSIPSVLALTKANN---YYINE 357

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 17/158 (10%), Positives = 43/158 (27%), Gaps = 25/158 (15%)

Query: 23  EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK 82
            V   +     +   +H   +      ++   V +++ K          +G   L    +
Sbjct: 239 YVNPFIARHVNRLKEMHDAFK-----LSNPDGVFDLVTKSE------CLQGFYMLRNLIR 287

Query: 83  FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEI 142
                ++  +    + L      +++              + N  L  A+   N     +
Sbjct: 288 RNDEVLLDDI----RFLLS-IPGIKALAP-----TATIPGDANELLRLALRLGNQGACAL 337

Query: 143 LTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           L         +  N+     Y+       D+    LE+
Sbjct: 338 LLSIPSVLALTKANN----YYINETGGRLDLRAVALEH 371

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.9 bits (124), Expect = 3e-08
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 18/118 (15%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
             ET LH+A +      + ++     L+Q+               +     + +TALH  
Sbjct: 168 PDETALHLAVRSVDRTSLHIV---DFLVQNSGN------------LDKQTGKGSTALHYC 212

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV--LALLENSTSASHE 187
               N + +++L +        AN  G+TPL +A   +       L    +    SH 
Sbjct: 213 CLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.1 bits (101), Expect = 3e-05
 Identities = 21/111 (18%), Positives = 42/111 (37%), Gaps = 21/111 (18%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVE 94
            T LH+   +  S + ++  + + L +    L +   KG T LH      +++ +++L  
Sbjct: 170 ETALHL---AVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL-- 224

Query: 95  RAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
                      L          I + N+   T L  A   ++    E+LT+
Sbjct: 225 -----------LRGKAS-----IEIANESGETPLDIAKRLKHEHCEELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 41.9 bits (98), Expect = 7e-05
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 4/87 (4%)

Query: 118 RMTNKEKNTALHEAVCHQN---VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
              ++   TALH AV   +   + +V+ L +   +        G T L+      +++ +
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLTDNAECL 221

Query: 175 LALLENSTSASHEGPNGKTALHAAAMK 201
             LL    S      +G+T L  A   
Sbjct: 222 KLLLRGKASIEIANESGETPLDIAKRL 248

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.4 bits (120), Expect = 9e-08
 Identities = 28/120 (23%), Positives = 46/120 (38%), Gaps = 17/120 (14%)

Query: 62  CPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN 121
            PL      A  E  LH+A K  +   +  LV+   ++Q+               +    
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASL-PLVDF--IIQNGGH------------LDAKA 223

Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
            + NTALH A  +   D +++L K       + N  G+T L +A      +    LLE +
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECE-ELLEQA 281

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 44.6 bits (105), Expect = 9e-06
 Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 25/92 (27%)

Query: 65  LLLQ-------VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
            ++Q         A G T LH AA +   D +++L++                   R ++
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG------------------RALV 252

Query: 118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPD 149
              N+   TAL  A    + +  E+L +    
Sbjct: 253 GTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVE 94
           NT LH      + +        ++L K   L+  VN  GET L +A K  H +   +L +
Sbjct: 227 NTALHYAALYNQPDCL------KLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

Query: 95  --RAKLLQHENEELESGIRT 112
                     + +    I T
Sbjct: 281 AQAGTFAFPLHVDYSWVIST 300

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 126 TALHEAVCHQN---VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
             LH AV   N   + +V+ + +       +   DG T L+ AA Y   D +  LL+   
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTALHYAALYNQPDCLKLLLKGRA 250

Query: 183 SASHEGPNGKTALHAA 198
                   G+TAL  A
Sbjct: 251 LVGTVNEAGETALDIA 266

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 16/112 (14%)

Query: 61  KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMT 120
             PL      A  E  LH+A K  +   +  LV+   ++Q+               +   
Sbjct: 159 GQPLPGPDAQAPEELVLHLAVKVANQASL-PLVDF--IIQNGG------------HLDAK 203

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
             + NTALH A  +   D +++L K       + N  G+T L +A      +
Sbjct: 204 AADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKE 254

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 7e-05
 Identities = 20/121 (16%), Positives = 39/121 (32%), Gaps = 20/121 (16%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
              TPL  A           L++                      +   +      LH A
Sbjct: 234 DNATPLIQATAANSLLACEFLLQNG------------------ANVNQADSAGRGPLHHA 275

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
               +  +  +  K   D   + +++G+ PL +A +  ++D+V  LL  +     E   G
Sbjct: 276 TILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIV-TLLRLAKMREAEAAQG 333

Query: 192 K 192
           +
Sbjct: 334 Q 334

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
             ++  T L +A    ++   E L +   +    A++ G+ PL+ A     + +    L+
Sbjct: 231 GGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATILGHTGLACLFLK 289

Query: 180 NSTSASHEGPNGKTALHAA 198
                      G+  L  A
Sbjct: 290 RGADLGARDSEGRDPLTIA 308

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.98
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.91
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.91
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.9
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.87
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.81

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.1e-42  Score=257.39  Aligned_cols=213  Identities=19%  Similarity=0.175  Sum_probs=183.2

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHH---HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIK---RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~---~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      .||||.|+..|+.++|++|++.|.+   .+..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~   83 (282)
T 1oy3_D           10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL--AAILGEASTVEKLYA----AGAGVLVAERGGHTALH   83 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCSSCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHH
Confidence            5899999999999999999999988   66788899999999  999999999999988    45667888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhhhhhhhhH-------------h----------------hhhhhhHHHHhhhccccCchHhH
Q 027562           79 VAAKFGHSDIVRVLVERAKLLQHENEE-------------L----------------ESGIRTARHMIRMTNKEKNTALH  129 (222)
Q Consensus        79 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~----------------~~~~~~~~~~~~~~~~~~~~~l~  129 (222)
                      +|+..|+.+++++|++.++........             .                ...+......++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            999999999999999987653221100             0                00001112335667889999999


Q ss_pred             HHHhcCChHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHH
Q 027562          130 EAVCHQNVDVVEILTKEDPDYPYSAN-NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS  208 (222)
Q Consensus       130 ~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  208 (222)
                      +|+..|+.+++++|++.|+++. ..+ ..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.++++
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~  242 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILAR  242 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHH
Confidence            9999999999999999999944 555 45999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCcccccc
Q 027562          209 YTLSVGISILISF  221 (222)
Q Consensus       209 ~Ll~~ga~~~~~~  221 (222)
                      +|+++||+++.++
T Consensus       243 ~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          243 LLRAHGAPEPEDG  255 (282)
T ss_dssp             HHHHTTCCCCCCC
T ss_pred             HHHHcCCCcCcCC
Confidence            9999999999765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=3.4e-41  Score=242.24  Aligned_cols=197  Identities=19%  Similarity=0.186  Sum_probs=180.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccc-cccCCChHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ-VNAKGETPLHV   79 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~t~L~~   79 (222)
                      +||||.|+..|+.+++++|++.+.+.. ..+..|.||||+  |+..|+.+++++|++...  ...++. .+..|.||||.
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~~~--~~~~~~~~~~~g~t~L~~   78 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW--SVSFQAHEITSFLLSKME--NVNLDDYPDDSGWTPFHI   78 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHTCT--TCCGGGCCCTTSCCHHHH
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHH--HHHcCCHHHHHHHHhccc--cccccccCCCCCCCHHHH
Confidence            689999999999999999999988776 478899999999  999999999999988421  133444 78899999999


Q ss_pred             HHHhCCHHHHHHHHHhh--hhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCC
Q 027562           80 AAKFGHSDIVRVLVERA--KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND  157 (222)
Q Consensus        80 a~~~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (222)
                      |+..|+.+++++|+++|  .+++.                  .+..|.||||.|+..|+.+++++|++.|.+ .+..+..
T Consensus        79 A~~~~~~~~~~~Ll~~g~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~  139 (228)
T 2dzn_A           79 ACSVGNLEVVKSLYDRPLKPDLNK------------------ITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKF  139 (228)
T ss_dssp             HHHHCCHHHHHHHHSSSSCCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTT
T ss_pred             HHHcCCHHHHHHHHhCCCCccccc------------------CCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCC
Confidence            99999999999999998  55544                  788999999999999999999999999999 6688999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcC-CCCccCCCCCccHHHHHHHhccchhHHHHH-hcCCcccccc
Q 027562          158 GKTPLYMAADYRSSDMVLALLENS-TSASHEGPNGKTALHAAAMKSYFGKFSYTL-SVGISILISF  221 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~ga~~~~~~  221 (222)
                      |+||||+|+..++.+++++|+++| ++++.++..|+||||+|+..++.+++++|+ ++|+++++.+
T Consensus       140 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence            999999999999999999999999 999999999999999999999999999999 9999999865

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.2e-41  Score=248.35  Aligned_cols=195  Identities=21%  Similarity=0.183  Sum_probs=147.4

Q ss_pred             ChHHHHHHHcC-------------CchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCcccc
Q 027562            2 DPNLFKAAAAG-------------NLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLL   67 (222)
Q Consensus         2 ~~~l~~A~~~g-------------~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~   67 (222)
                      .||||.|+..|             +.+++++|++.|.+.+ ..+..|.||||+  |+..|+.+++++|++    .+..++
T Consensus        11 ~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~   84 (253)
T 1yyh_A           11 FTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL--AARYSRSDAAKRLLE----ASADAN   84 (253)
T ss_dssp             -----------------------------------------CCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTT
T ss_pred             CcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHH--HHHcCCHHHHHHHHH----cCCCCC
Confidence            48999999987             8999999999999886 458899999999  999999999999887    456678


Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHhhh-hhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           68 QVNAKGETPLHVAAKFGHSDIVRVLVERAK-LLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        68 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ..+..|.||||+|+..|+.+++++|++.+. .++.                  .+..|.||||+|+..|+.+++++|++.
T Consensus        85 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~  146 (253)
T 1yyh_A           85 IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA------------------RMHDGTTPLILAARLAVEGMLEDLINS  146 (253)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC------------------CCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc------------------cCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            889999999999999999999999999886 5444                  677888999999999999999999998


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          147 DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       147 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |++ .+..+..|+||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+++++.+
T Consensus       147 g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          147 HAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             TCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccc
Confidence            888 66778888999999999999999999999999999888889999999999999999999999999888764

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.2e-41  Score=242.26  Aligned_cols=195  Identities=22%  Similarity=0.285  Sum_probs=175.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHH-HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIK-RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      ++||+.|+..|+.+.++++++.+.. .+..+..|.||||+  |+..|+.+++++|++.    +..++..+..|.||||+|
T Consensus         7 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   80 (231)
T 3aji_A            7 NIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW--ACSAGHTEIVEFLLQL----GVPVNDKDDAGWSPLHIA   80 (231)
T ss_dssp             SSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH--HHHHTCHHHHHHHHHT----TCCSCCCCTTSCCHHHHH
T ss_pred             cchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH--HHHcCcHHHHHHHHHh----CCCCCCcCCCCCCHHHHH
Confidence            6899999999999999999998654 34678899999999  9999999999999873    566788899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..++.+++++|++.|.+ ++..+..|.|
T Consensus        81 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t  141 (231)
T 3aji_A           81 ASAGXDEIVKALLVKGAHVNA------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDAT  141 (231)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             HHcCHHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCc
Confidence            999999999999999988776                  678899999999999999999999999888 6677888999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|+++++.+
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  202 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN  202 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999988764

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3.1e-41  Score=241.69  Aligned_cols=195  Identities=18%  Similarity=0.156  Sum_probs=182.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++   .....++..+..|.||||.|+
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~---~~~~~~~~~~~~g~t~L~~A~  100 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA--AVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAA  100 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHH---BTTSCTTCCCTTCCCHHHHHH
T ss_pred             CchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH--HHHcCCHHHHHHHHH---cCCCCcccCCCCCCcHHHHHH
Confidence            589999999999999999999999998899999999999  999999999999887   344467888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||
T Consensus       101 ~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  161 (223)
T 2f8y_A          101 RLAVEGMLEDLINSHADVNA------------------VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETP  161 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCH
T ss_pred             HhCcHHHHHHHHHcCCCCcC------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCH
Confidence            99999999999999988776                  788999999999999999999999999998 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      ||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+...-+
T Consensus       162 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          162 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSCC-
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999987654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.2e-41  Score=244.57  Aligned_cols=195  Identities=22%  Similarity=0.214  Sum_probs=182.2

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+
T Consensus        12 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~   85 (237)
T 3b7b_A           12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME--AAENNHLEAVKYLIK----AGALVDPKDAEGSTCLHLAA   85 (237)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH--HHHTTCHHHHHHHHT----TTCCCCCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHH--HHHhCCHHHHHHHHh----CCCCCCCCCCCCCcHHHHHH
Confidence            589999999999999999999999998888999999999  999999999998886    45667888999999999999


Q ss_pred             HhCCHHHHHHHHHhh-hhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           82 KFGHSDIVRVLVERA-KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      ..|+.+++++|++.+ ..++.                  .+..|.||+|+|+..++.+++++|++.|++ .+..+..|.|
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t  146 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNC------------------QDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENI  146 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             HcCCHHHHHHHHhCCCCCccc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCC
Confidence            999999999999998 55544                  788999999999999999999999999999 6688999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|+++++.+
T Consensus       147 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  207 (237)
T 3b7b_A          147 CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKN  207 (237)
T ss_dssp             HHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccC
Confidence            9999999999999999999999999999999999999999999999999999999998765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=4.3e-41  Score=243.55  Aligned_cols=199  Identities=21%  Similarity=0.259  Sum_probs=178.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHH----HHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAR----EVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      +||||.|+..|+.+++++|++    .+.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.|||
T Consensus        10 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l   83 (241)
T 1k1a_A           10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL--AVITTLPSVVRLLVT----AGASPMALDRHGQTAA   83 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHH--HHHcCCHHHHHHHHH----cCCCccccCCCCCCHH
Confidence            589999999999999999998    455666788899999999  999999999999987    4566778899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC-C
Q 027562           78 HVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN-N  156 (222)
Q Consensus        78 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~  156 (222)
                      |+|+..|+.+++++|++.+.....              .++..+..|.||||+|+..|+.+++++|++.|++. +..+ .
T Consensus        84 ~~A~~~~~~~~~~~Ll~~~~~~~~--------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~  148 (241)
T 1k1a_A           84 HLACEHRSPTCLRALLDSAAPGTL--------------DLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIK  148 (241)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSC--------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccc--------------cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccccc
Confidence            999999999999999999872111              12237889999999999999999999999999994 4555 7


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  213 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN  213 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999998764

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.4e-41  Score=248.45  Aligned_cols=194  Identities=24%  Similarity=0.276  Sum_probs=151.8

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHH--------HhhhhcCCCchhHHhhhcccccc-cHHHHHHHHHhCCccccccccCC
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKR--------LLTAKTKNTILHVNIRSKESENA-STKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~--------~~~~~~g~~~L~~~~a~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      ++|+.|+..|+.++|++|++.+.+.        +..+..|.|||+.  |+..+..+ +++.|+    ..+.+++..|..|
T Consensus        13 ~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~--a~~~~~~~~~v~~Ll----~~Gadvn~~d~~G   86 (269)
T 4b93_B           13 EKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQ--CPKCAPAQKRLAKVP----ASGLGVNVTSQDG   86 (269)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTCC----------------------------------------------CCCCTTCCCTTS
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHH--HHHhCCHHHHHHHHH----HCCCCCCCcCCCC
Confidence            6899999999999999999866542        3567789999999  77766643 444443    4677889999999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCC
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS  153 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  153 (222)
                      +||||+|+..|+.+++++|++.|++++.                  .+..|.||++.|+..++.+++++|++.|++ ++.
T Consensus        87 ~TpLh~A~~~g~~~~v~~Ll~~~a~~~~------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~  147 (269)
T 4b93_B           87 SSPLHVAALHGRADLIPLLLKHGANAGA------------------RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNK  147 (269)
T ss_dssp             CCHHHHHHHTTCTTHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCC
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCcCc------------------cCCCCCCccccccccChHHHHHHHHHCCCC-CCC
Confidence            9999999999999999999999988776                  788899999999999999999999999998 668


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       154 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .|..|+||||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++|||+++.+
T Consensus       148 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          148 KDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             CCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            89999999999999999999999999999999999999999999999999999999999999998865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=6.1e-41  Score=248.57  Aligned_cols=193  Identities=19%  Similarity=0.193  Sum_probs=175.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~t~L~~A~  133 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE--ACLGGHLSCVKILLK----HGAQVNGVTADWHTPLFNAC  133 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCSSCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH--HHHCCcHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence            489999999999999999999999988899999999999  999999999999987    35677888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.|++++.                   +..|.||||+|+..|+.+++++|++.|++ .+..|..|.||
T Consensus       134 ~~~~~~~v~~Ll~~g~~~~~-------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~  193 (285)
T 3d9h_A          134 VSGSWDCVNLLLQHGASVQP-------------------ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTP  193 (285)
T ss_dssp             HHTCHHHHHHHHHTTCCSSC-------------------SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCH
T ss_pred             HcCHHHHHHHHHHCCCCCCC-------------------CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCH
Confidence            99999999999999987664                   34589999999999999999999999988 66788899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ||+|+..++.+++++|+++|++++. +..|.||||+|+..++.+++++|+++|+++++.+
T Consensus       194 L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  252 (285)
T 3d9h_A          194 LYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKN  252 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            9999999999999999999999985 7789999999999999999999999999998765

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=2.3e-41  Score=250.85  Aligned_cols=192  Identities=18%  Similarity=0.120  Sum_probs=177.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||+|+..|+.+++++|++.|.+++..  +|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~--A~~~g~~~~v~~Ll~----~ga~~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQ--AATLEDTKIVKILLF----SGLDDSQFDDKGNTALYYAV  103 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHH--HTTSSSCHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHH--HHHcCCHHHHHHHHH----CCCCCCCcCCCCCcHHHHHH
Confidence            48999999999999999999999988655  59999999  999999999999988    46668889999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccC-chHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK-NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      ..|+.+++++|+++|++++.                  .+..| .||||+|+..|+.+++++|++.|++..  ....|.|
T Consensus       104 ~~g~~~~v~~Ll~~ga~~~~------------------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t  163 (285)
T 3kea_A          104 DSGNMQTVKLFVKKNWRLMF------------------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLS  163 (285)
T ss_dssp             HTTCHHHHHHHHHHCGGGGG------------------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHH
T ss_pred             HcCCHHHHHHHHhcCCCCCc------------------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCcc
Confidence            99999999999999998776                  78888 899999999999999999999998732  1238899


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccH-HHHHHHhccchhHHHHHhcCCcccccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTA-LHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~-l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |||+|+..++.+++++|+++|++++.++..|+|| ||+|+..++.+++++|+++|++++..+
T Consensus       164 ~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          164 CIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             HHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999999999999999998 999999999999999999999999864

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-40  Score=246.60  Aligned_cols=212  Identities=18%  Similarity=0.148  Sum_probs=164.1

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+.
T Consensus        41 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~  114 (285)
T 1wdy_A           41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLL--AAIAGSVKLLKLFLS----KGADVNECDFYGFTAFMEAAV  114 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCBCTTCCBHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCccCcccCCHHHHHHH
Confidence            67777777777777777777777766666677777777  777777777776666    344566677777788888887


Q ss_pred             hCCHHHHHHHHHhhhhhhhh----------hhHhhhhhhhH----------------HHHhhhccccCchHhHHHHhcCC
Q 027562           83 FGHSDIVRVLVERAKLLQHE----------NEELESGIRTA----------------RHMIRMTNKEKNTALHEAVCHQN  136 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~----------~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~a~~~~~  136 (222)
                      .|+.+++++|++.|++++..          +..+.+++...                ...++..+..|.||+|+|+..++
T Consensus       115 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~  194 (285)
T 1wdy_A          115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD  194 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSC
T ss_pred             hCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccc
Confidence            77778888887777766543          11111222111                22234567788899999998888


Q ss_pred             ----hHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHH
Q 027562          137 ----VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTL  211 (222)
Q Consensus       137 ----~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll  211 (222)
                          .+++++|++.|.+ ++..+..|.||||+|+..++.+++++|++ .|++++.++..|.||||+|+..++.+++++|+
T Consensus       195 ~~~~~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll  273 (285)
T 1wdy_A          195 DSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC  273 (285)
T ss_dssp             TTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHH
Confidence                8889999999888 66788899999999999999999999998 89999999999999999999999999999999


Q ss_pred             hcCCcccccc
Q 027562          212 SVGISILISF  221 (222)
Q Consensus       212 ~~ga~~~~~~  221 (222)
                      ++||++++.+
T Consensus       274 ~~Ga~~~~~d  283 (285)
T 1wdy_A          274 KRGASTDCGD  283 (285)
T ss_dssp             HHSSCSCCSS
T ss_pred             HcCCCCCccc
Confidence            9999999876

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.4e-40  Score=253.10  Aligned_cols=213  Identities=22%  Similarity=0.172  Sum_probs=185.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~g~~~iv~~Ll~----~g~~~~~~~~~g~t~L~~A~  132 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN--ACSYGHYEVTELLLK----HGACVNAMDLWQFTPLHEAA  132 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH--HHHCCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHH
Confidence            489999999999999999999999998889999999999  999999999999987    35667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH------------------------------HHH------hhhccccCc
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTA------------------------------RHM------IRMTNKEKN  125 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~------------------------------~~~------~~~~~~~~~  125 (222)
                      ..|+.+++++|+++|++++..+..+.+++...                              ...      ....+..|.
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  212 (351)
T 3utm_A          133 SKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE  212 (351)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCC
Confidence            99999999999999988776554333222111                              000      012456789


Q ss_pred             hHhHHHHhc---CChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc
Q 027562          126 TALHEAVCH---QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS  202 (222)
Q Consensus       126 ~~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  202 (222)
                      ||+|+|+..   +..+++++|++.|.+ .+..+..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|
T Consensus       213 t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~  291 (351)
T 3utm_A          213 TALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAG  291 (351)
T ss_dssp             CHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            999999998   568999999999999 6688999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhcCCcccccc
Q 027562          203 YFGKFSYTLSVGISILISF  221 (222)
Q Consensus       203 ~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +.+++++|+++|+++++.+
T Consensus       292 ~~~~v~~Ll~~gad~~~~~  310 (351)
T 3utm_A          292 HLQTCRLLLSYGSDPSIIS  310 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCC
T ss_pred             cHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999865

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.3e-41  Score=241.34  Aligned_cols=191  Identities=22%  Similarity=0.177  Sum_probs=180.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+
T Consensus        41 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~  114 (231)
T 3aji_A           41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI--AASAGXDEIVKALLV----KGAHVNAVNQNGCTPLHYAA  114 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHH--HHHcCHHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence            589999999999999999999999988889999999999  999999999999887    45667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.|.+++.                  .+..|.||+|+|+..|+.+++++|++.|.+ .+..|..|+||
T Consensus       115 ~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  175 (231)
T 3aji_A          115 SKNRHEIAVMLLEGGANPDA------------------KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTP  175 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCH
Confidence            99999999999999988766                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      ||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|+++
T Consensus       176 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          176 LHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccccccC
Confidence            99999999999999999999999999999999999999999999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=3.9e-40  Score=242.93  Aligned_cols=212  Identities=19%  Similarity=0.182  Sum_probs=172.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHH--------hhhhcCCCchhHHhhhcc---cccccHHHHHHHHHhCCc------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRL--------LTAKTKNTILHVNIRSKE---SENASTKFVEEILEKCPL------   64 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~--------~~~~~g~~~L~~~~a~~~---~~~~~~~~l~~~~~~~~~------   64 (222)
                      .||||.|+..|+.++|+.|++.+.+..        ..+..|.||||+  |+..   |+.+++++|++.......      
T Consensus        14 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~--A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLK--AMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             HHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHH--HHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHH--HHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            489999999999999999999876543        247799999999  7765   999999999998654321      


Q ss_pred             -cccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHH
Q 027562           65 -LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        65 -~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  143 (222)
                       .....+..|.||||+|+..|+.+++++|+++|++++..+.....    ........+..|.||||+|+..|+.+++++|
T Consensus        92 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~----~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  167 (273)
T 2pnn_A           92 ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF----KKTKGRPGFYFGELPLSLAACTNQLAIVKFL  167 (273)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG----SSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred             cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc----ccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence             12225678999999999999999999999999988773221000    0000111223799999999999999999999


Q ss_pred             Hh---cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCCc-------cCCCCCccHHHHHHHhccc
Q 027562          144 TK---EDPDYPYSANNDGKTPLYMAADYRS---------SDMVLALLENSTSAS-------HEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       144 l~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~g~t~l~~a~~~~~~  204 (222)
                      ++   .|++ ++..|..|+||||+|+..++         .+++++|+++|++++       .++..|+||||+|+..|+.
T Consensus       168 l~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~  246 (273)
T 2pnn_A          168 LQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKI  246 (273)
T ss_dssp             HHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChH
Confidence            99   8888 67889999999999999888         799999999999996       4899999999999999999


Q ss_pred             hhHHHHHhcCC-ccccc
Q 027562          205 GKFSYTLSVGI-SILIS  220 (222)
Q Consensus       205 ~~~~~Ll~~ga-~~~~~  220 (222)
                      +++++|+++|| |+...
T Consensus       247 ~iv~~Ll~~ga~dp~~~  263 (273)
T 2pnn_A          247 GVLAYILQREIHEPECR  263 (273)
T ss_dssp             HHHHHHHHHHTC-----
T ss_pred             HHHHHHHHCCCCCchhh
Confidence            99999999999 77654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=5.3e-40  Score=239.68  Aligned_cols=191  Identities=18%  Similarity=0.149  Sum_probs=176.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++.   ....++..+..|.||||+|+
T Consensus        58 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~L~~A~  132 (253)
T 1yyh_A           58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHA--AVSADAQGVFQILIRN---RATDLDARMHDGTTPLILAA  132 (253)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHHS---TTSCTTCCCTTCCCHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHHc---CCCCccccCCCCCcHHHHHH
Confidence            489999999999999999999999999899999999999  9999999999998773   44467888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|++ .+..+..|.||
T Consensus       133 ~~~~~~~v~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tp  193 (253)
T 1yyh_A          133 RLAVEGMLEDLINSHADVNA------------------VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETP  193 (253)
T ss_dssp             HHTCSSHHHHHHHTTCCTTC------------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HcChHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            99999999999999988776                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      ||+|+..++.+++++|+++|++++.+|..|.||+++|+..|+.+++++|......
T Consensus       194 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~~  248 (253)
T 1yyh_A          194 LFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHH  248 (253)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC----
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999876543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=8e-40  Score=248.08  Aligned_cols=98  Identities=14%  Similarity=0.091  Sum_probs=85.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhh-hcCCCchhHHhhhcccccccHHHHHHHHH--------------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTA-KTKNTILHVNIRSKESENASTKFVEEILE--------------------   60 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~g~~~L~~~~a~~~~~~~~~~~l~~~~~--------------------   60 (222)
                      +|+|+.|+++|++++|++|++.|++++..+ ..|.||||+  |+..|+.+++++|++...                    
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~--A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHN--AVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH--HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHH--HHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcc
Confidence            479999999999999999999999998655 469999999  999999999999987532                    


Q ss_pred             ---------hCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhh
Q 027562           61 ---------KCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQH  101 (222)
Q Consensus        61 ---------~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~  101 (222)
                               .....++..+..|.||||.|+..|+.++++++++.|++++.
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~  153 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL  153 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcch
Confidence                     12345677888999999999999999999999999987765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=6.4e-40  Score=239.63  Aligned_cols=210  Identities=19%  Similarity=0.091  Sum_probs=174.1

Q ss_pred             ChHHHHHHHcCCchhHH----HHHHHHHHHHh----hhhcCCCchhHHhhhcc---cccccHHHHHHHHHhCCcc---c-
Q 027562            2 DPNLFKAAAAGNLEPFK----DIAREVIKRLL----TAKTKNTILHVNIRSKE---SENASTKFVEEILEKCPLL---L-   66 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~----~ll~~~~~~~~----~~~~g~~~L~~~~a~~~---~~~~~~~~l~~~~~~~~~~---~-   66 (222)
                      .||||.|+..|+.+.|+    +|++.|.+++.    .+..|.||||+  |+..   |+.+++++|++........   + 
T Consensus         3 ~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~--A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMK--AVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             HHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHH--HHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHH--HHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            48999999999998654    55557777776    78899999999  8888   9999999999986654311   1 


Q ss_pred             ---cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHH
Q 027562           67 ---LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        67 ---~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  143 (222)
                         ...|..|.||||+|+..|+.+++++|+++|++++.++......     ......+..|.||||+|+..|+.+++++|
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  155 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQ-----KHQGTCFYFGELPLSLAACTKQWDVVTYL  155 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGS-----CCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccccc-----ccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence               1234679999999999999999999999999887732211100     00011223499999999999999999999


Q ss_pred             Hh---cCCCCCCCCCCCCCCHHHHHHH--cCCHH-------HHHHHHhcCCCC-------ccCCCCCccHHHHHHHhccc
Q 027562          144 TK---EDPDYPYSANNDGKTPLYMAAD--YRSSD-------MVLALLENSTSA-------SHEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       144 l~---~~~~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~  204 (222)
                      ++   .|++ ++..|..|+||||+|+.  .++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.
T Consensus       156 l~~~~~ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~  234 (256)
T 2etb_A          156 LENPHQPAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKI  234 (256)
T ss_dssp             HHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred             HhccccCCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCH
Confidence            99   8998 67889999999999998  78888       999999999999       89999999999999999999


Q ss_pred             hhHHHHHhcCCcccc
Q 027562          205 GKFSYTLSVGISILI  219 (222)
Q Consensus       205 ~~~~~Ll~~ga~~~~  219 (222)
                      +++++|+++|+++..
T Consensus       235 ~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          235 EIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999999987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=1.2e-39  Score=229.83  Aligned_cols=189  Identities=21%  Similarity=0.220  Sum_probs=173.3

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHH-HHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVI-KRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~-~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .||||.|+..|+.+.+++|++.+. +++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNI--AVHNNDIEIAKALID----RGADINLQNSISDSPYLYA   79 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence            479999999999999999999776 777888999999999  999999999999987    4667788999999999999


Q ss_pred             HHhCCHHHHHHHHHh-hhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVER-AKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK  159 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  159 (222)
                      +..|+.+++++|++. +.+++.                  .+..|.||||+|+..|+.+++++|++.|....+..+..|+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~  141 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATPDLNK------------------HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGY  141 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCCCTTC------------------CCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSC
T ss_pred             HHcCCHHHHHHHHhccCccccc------------------ccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCC
Confidence            999999999999954 445444                  7889999999999999999999999999433778899999


Q ss_pred             CHHHHHHHcCC-----HHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          160 TPLYMAADYRS-----SDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       160 t~l~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      ||||+|+..++     .+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus       142 t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          142 TALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             CHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             CHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            99999999988     99999999999999999999999999999999999999999987

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=5e-41  Score=242.66  Aligned_cols=198  Identities=20%  Similarity=0.198  Sum_probs=175.7

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHH----HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIK----RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~----~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      .||||.|+..|+.+++++|++.+..    ++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.|||
T Consensus         9 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L   82 (236)
T 1ikn_D            9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL--AVITNQPEIAEALLG----AGCDPELRDFRGNTPL   82 (236)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHH--HHHTTCHHHHHCCCS----CCCCSCCCCTTCCCHH
T ss_pred             CchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHH
Confidence            5899999999999999999998764    56788899999999  999999999988876    4667888999999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC-
Q 027562           78 HVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN-  156 (222)
Q Consensus        78 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-  156 (222)
                      |+|+..|+.+++++|++.++.....            ..++..+..|.||||+|+..|+.+++++|++.|++ .+..+. 
T Consensus        83 ~~A~~~~~~~~v~~Ll~~~~~~~~~------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~  149 (236)
T 1ikn_D           83 HLACEQGCLASVGVLTQSCTTPHLH------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPC  149 (236)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSS------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTT
T ss_pred             HHHHHcCCHHHHHHHHhcccchhHH------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCC
Confidence            9999999999999999998753221            11334788899999999999999999999999999 556666 


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      .|+||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|+++.
T Consensus       150 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          150 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL  211 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh
Confidence            99999999999999999999999999999999999999999999999999999999999876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=8.5e-40  Score=250.36  Aligned_cols=211  Identities=17%  Similarity=0.198  Sum_probs=169.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.++|++|++.|.+++..+..|.||||+  |+..|+.+++++|++...      +..+..|.||||+|+
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~~g~------~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHL--ACKFGCVDTAKYLASVGE------VHSLWHGQKPIHLAV   92 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH--HHHHCCHHHHHHHHHHCC------CCCCBTTBCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHH--HHHcCCHHHHHHHHHCCC------CccccCCCCHHHHHH
Confidence            379999999999999999999998888888899999999  899999999999888532      223346788888888


Q ss_pred             HhCCHHHHHHHHHh----hhhhhh-----------------hhhHhhhhhh-----------------hHHHHhhhcccc
Q 027562           82 KFGHSDIVRVLVER----AKLLQH-----------------ENEELESGIR-----------------TARHMIRMTNKE  123 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~----~~~~~~-----------------~~~~~~~~~~-----------------~~~~~~~~~~~~  123 (222)
                      ..|+.+++++|++.    |..++.                 .+..+.+++.                 .....++..+..
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~  172 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA  172 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence            88888888888887    443333                 2111111111                 112234457888


Q ss_pred             CchHhHHHHhcCChHHHHHHHhcCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          124 KNTALHEAVCHQNVDVVEILTKEDPDY----PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       124 ~~~~l~~a~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                      |.||||+|+..|+.+++++|++.|++.    .+..+..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~  252 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV  252 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999999988762    4567888999999999999999999999999999999999999999999


Q ss_pred             HhccchhHHHHHhcCCccccc
Q 027562          200 MKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       200 ~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      ..|+.+++++|+++|++++++
T Consensus       253 ~~g~~~~v~~Ll~~~~~~~~~  273 (364)
T 3ljn_A          253 RAAMVLLTKELLQKTDVFLIQ  273 (364)
T ss_dssp             HTCCHHHHHHHHHHSCHHHHH
T ss_pred             HhChHHHHHHHHHcCCchhhh
Confidence            999999999999999987653

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=2.2e-40  Score=239.87  Aligned_cols=194  Identities=17%  Similarity=0.160  Sum_probs=175.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..++.+++++|++........++..+..|.||||.|+
T Consensus        47 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~--A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~  124 (241)
T 1k1a_A           47 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL--ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  124 (241)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH--HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHH
Confidence            489999999999999999999999998889999999999  999999999999998755444577888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      ..|+.+++++|++.|++++.                  .+ ..|.||||+|+..|+.+++++|++.|++ ++..+..|+|
T Consensus       125 ~~~~~~~~~~Ll~~g~~~~~------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t  185 (241)
T 1k1a_A          125 NTECQETVQLLLERGADIDA------------------VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSS  185 (241)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred             HcCCHHHHHHHHHcCCCccc------------------ccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence            99999999999999988776                  55 7899999999999999999999999999 6688999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      |||+|+..++.+++++|+++|++++.++..|.||+++|+..++.++++.|++++++
T Consensus       186 ~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~aS  241 (241)
T 1k1a_A          186 ALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPAS  241 (241)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC-------
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999874

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=9.8e-40  Score=243.66  Aligned_cols=196  Identities=19%  Similarity=0.143  Sum_probs=164.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      +|+|+.|+..|+.++|++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        41 ~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~----~ga~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           41 GAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ--ACIDDNVDMVKFLVE----NGANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH--HHHcCCHHHHHHHHH----CCCCCCCCCCCCCcHHHHHH
Confidence            379999999999999999999999999899999999999  999999999999988    45678888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc-CC------------
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE-DP------------  148 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~------------  148 (222)
                      ..|+.+++++|+++|++++.                  .+..|.||+|+|+..+..+++++++.. +.            
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~  176 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGA------------------VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI  176 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCCC------------------cCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH
Confidence            99999999999999988776                  677788888888877777777766542 21            


Q ss_pred             -------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          149 -------------DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       149 -------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                                   ......+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus       177 ~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  256 (299)
T 1s70_B          177 MLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLC  256 (299)
T ss_dssp             HHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCC
Confidence                         1122345678888888888888888888888888888888888888888888888888888888888


Q ss_pred             cccccc
Q 027562          216 SILISF  221 (222)
Q Consensus       216 ~~~~~~  221 (222)
                      ++++.+
T Consensus       257 d~~~~d  262 (299)
T 1s70_B          257 DMEAVN  262 (299)
T ss_dssp             CTTCCC
T ss_pred             CCCCcC
Confidence            887654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=5.9e-39  Score=219.63  Aligned_cols=158  Identities=23%  Similarity=0.308  Sum_probs=137.6

Q ss_pred             chhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHH
Q 027562           37 ILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM  116 (222)
Q Consensus        37 ~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  116 (222)
                      +|+.  |++.|+.++++.|++    .+.+++.+|..|+||||.|+..++.+++++|++.|++++.               
T Consensus         7 ~L~~--Aa~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~---------------   65 (169)
T 4gpm_A            7 RLIE--AAENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA---------------   65 (169)
T ss_dssp             HHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC---------------
T ss_pred             HHHH--HHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh---------------
Confidence            5777  888888888888876    4566788888999999999999999999999999988776               


Q ss_pred             hhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHH
Q 027562          117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALH  196 (222)
Q Consensus       117 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  196 (222)
                         ++..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++|++++.+|..|+|||+
T Consensus        66 ---~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  141 (169)
T 4gpm_A           66 ---KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD  141 (169)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ---hccCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence               788999999999999999999999999998 6788999999999999999999999999999999999999999999


Q ss_pred             HHHHhccchhHHHHHhcCCcccc
Q 027562          197 AAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       197 ~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      +|+..|+.+++++|+++||+++-
T Consensus       142 ~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          142 LAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHTC------
T ss_pred             HHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999999999874

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=1.6e-39  Score=248.91  Aligned_cols=189  Identities=20%  Similarity=0.265  Sum_probs=160.2

Q ss_pred             HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhh
Q 027562           24 VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN  103 (222)
Q Consensus        24 ~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  103 (222)
                      +.+.+..|..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+..|+.+++++|++.|+..+.. 
T Consensus        10 ~~~~~~~d~~g~t~L~~--Aa~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-   82 (364)
T 3ljn_A           10 KLNRIKSDDENMEKIHV--AARKGQTDEVRRLIE----TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW-   82 (364)
T ss_dssp             ------CCHHHHHHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCB-
T ss_pred             CCCccccCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc-
Confidence            34556778899999999  999999999999987    35678889999999999999999999999999999865542 


Q ss_pred             hHhhhhhhhH---------HHHhhh---------------------------ccccCchHhHHHHhcC--ChHHHHHHHh
Q 027562          104 EELESGIRTA---------RHMIRM---------------------------TNKEKNTALHEAVCHQ--NVDVVEILTK  145 (222)
Q Consensus       104 ~~~~~~~~~~---------~~~~~~---------------------------~~~~~~~~l~~a~~~~--~~~~~~~Ll~  145 (222)
                       .+.+++..+         ..++..                           .+..|.||||+|+..|  +.+++++|++
T Consensus        83 -~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~  161 (364)
T 3ljn_A           83 -HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ  161 (364)
T ss_dssp             -TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH
T ss_pred             -CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH
Confidence             122222111         122222                           7788999999999999  9999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-----CccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS-----ASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      .|++ ++..|..|.||||+|+..++.+++++|+++|++     ++..+..|.||||+|+..|+.+++++|+++|+++++.
T Consensus       162 ~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~  240 (364)
T 3ljn_A          162 LGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNME  240 (364)
T ss_dssp             HTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCC
T ss_pred             cCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            9999 678899999999999999999999999999999     9999999999999999999999999999999999986


Q ss_pred             c
Q 027562          221 F  221 (222)
Q Consensus       221 ~  221 (222)
                      +
T Consensus       241 d  241 (364)
T 3ljn_A          241 D  241 (364)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=1.6e-39  Score=238.01  Aligned_cols=211  Identities=19%  Similarity=0.173  Sum_probs=172.7

Q ss_pred             hHHHHHHHcCCchhHHHHHH----HHHHHHhhh----hcCCCchhHHhhh---cccccccHHHHHHHHHhCC-------c
Q 027562            3 PNLFKAAAAGNLEPFKDIAR----EVIKRLLTA----KTKNTILHVNIRS---KESENASTKFVEEILEKCP-------L   64 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~----~~~~~~~~~----~~g~~~L~~~~a~---~~~~~~~~~~l~~~~~~~~-------~   64 (222)
                      |+||.|++.|+.+.++.|++    .+.+.+..+    ..|.||||+  |+   ..|+.+++++|++......       .
T Consensus         7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~--A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPK--ALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHH--HHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHH--HHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            78999999999998777777    666665444    669999999  65   7899999999999866532       2


Q ss_pred             cccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHH
Q 027562           65 LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILT  144 (222)
Q Consensus        65 ~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll  144 (222)
                      ..+..|..|+||||+|+..|+.+++++|+++|++++..+....    .........+..|.||||+|+..|+.+++++|+
T Consensus        85 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  160 (260)
T 3jxi_A           85 PFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF----FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT  160 (260)
T ss_dssp             CBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC----CSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc----cCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence            2444566899999999999999999999999998877211000    000000001157999999999999999999999


Q ss_pred             h---cCCCCCCCCCCCCCCHHHHHHHcCC---------HHHHHHHHhcCCCC-------ccCCCCCccHHHHHHHhccch
Q 027562          145 K---EDPDYPYSANNDGKTPLYMAADYRS---------SDMVLALLENSTSA-------SHEGPNGKTALHAAAMKSYFG  205 (222)
Q Consensus       145 ~---~~~~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~g~t~l~~a~~~~~~~  205 (222)
                      +   .|++ ++..|..|+||||+|+..++         .+++++|+++|+++       +.++..|+||||+|+..|+.+
T Consensus       161 ~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  239 (260)
T 3jxi_A          161 ENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIG  239 (260)
T ss_dssp             HCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             hccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHH
Confidence            9   8888 67889999999999998877         69999999999998       679999999999999999999


Q ss_pred             hHHHHHhcCCccccc
Q 027562          206 KFSYTLSVGISILIS  220 (222)
Q Consensus       206 ~~~~Ll~~ga~~~~~  220 (222)
                      ++++|+++|+++...
T Consensus       240 ~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          240 IFQHIIRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhCCCcccc
Confidence            999999999987543

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2.2e-39  Score=253.66  Aligned_cols=212  Identities=23%  Similarity=0.177  Sum_probs=162.8

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..++.+++++|++    .+..++..+..|.||||.|+.
T Consensus       148 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~  221 (437)
T 1n11_A          148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV--AVHHNNLDIVKLLLP----RGGSPHSPAWNGYTPLHIAAK  221 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHH--HHHTTCHHHHHHHGG----GTCCSCCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHHH
Confidence            57777777777777777777776666666677777777  777777776666655    233445566677777777777


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhhhccccCchHhHHHHhcCChHHHHHHHhcC
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED  147 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  147 (222)
                      .|+.+++++|++.|.+++..+..+.+++...               ...++..+..|.||||+|+..|+.+++++|++.|
T Consensus       222 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g  301 (437)
T 1n11_A          222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG  301 (437)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            7777777777777777666554444443332               1123456778889999999999999999999888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       148 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .+ .+..+..|+||||+|+..++.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++||+++..+
T Consensus       302 ~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          302 VM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             CC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             cc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCC
Confidence            88 56778889999999999999999999999999999999999999999999999999999999999988754

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=7.1e-39  Score=237.08  Aligned_cols=213  Identities=20%  Similarity=0.202  Sum_probs=186.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhh-hhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLT-AKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      +|+|+.|+..|+.+++++|++.|.+++.. +..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   79 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHN--AVQMSREDIVELLLR----HGADPVLRKKNGATPFLLA   79 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHH--HHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence            48999999999999999999999888755 7889999999  999999999999987    3566778899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------HHH------hhhc----------cccCchHhHHHHhcC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTA---------RHM------IRMT----------NKEKNTALHEAVCHQ  135 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------~~~------~~~~----------~~~~~~~l~~a~~~~  135 (222)
                      +..|+.+++++|+++|++++..+..+.+++...         ..+      ++..          +..|.||||.|+..|
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  159 (285)
T 1wdy_A           80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG  159 (285)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence            999999999999999998887766555554433         111      1112          677899999999999


Q ss_pred             ChHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHH
Q 027562          136 NVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYRS----SDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYT  210 (222)
Q Consensus       136 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  210 (222)
                      +.+++++|++. |.+ .+..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus       160 ~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  238 (285)
T 1wdy_A          160 HVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  238 (285)
T ss_dssp             CHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence            99999999987 777 66889999999999999999    8999999999999999999999999999999999999999


Q ss_pred             Hh-cCCcccccc
Q 027562          211 LS-VGISILISF  221 (222)
Q Consensus       211 l~-~ga~~~~~~  221 (222)
                      ++ +|++++..+
T Consensus       239 l~~~g~~~~~~~  250 (285)
T 1wdy_A          239 LEQEHIEINDTD  250 (285)
T ss_dssp             HHSSSCCTTCCC
T ss_pred             HhccCCCccccC
Confidence            99 899998765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=6.4e-40  Score=240.85  Aligned_cols=192  Identities=19%  Similarity=0.168  Sum_probs=151.5

Q ss_pred             ChHHHHHHHcCCch-hHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLE-PFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~-~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .|||+.|+..+..+ +++.|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||++.|
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~--A~~~g~~~~v~~Ll~----~~a~~~~~~~~g~t~l~~a  126 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHV--AALHGRADLIPLLLK----HGANAGARNADQAVPLHLA  126 (269)
T ss_dssp             ----------------------CCCCTTCCCTTSCCHHHH--HHHTTCTTHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHH--HHHcCcHHHHHHHHh----cCCCcCccCCCCCCccccc
Confidence            37899999988765 8899999999999999999999999  999999999999987    4566788899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..++.+++++|++.|++++.                  +|..|.||||+|+..|+.+++++|++.|++ ++..+..|+|
T Consensus       127 ~~~~~~~~~~~Ll~~g~~~n~------------------~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t  187 (269)
T 4b93_B          127 CQQGHFQVVKCLLDSNAKPNK------------------KDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNT  187 (269)
T ss_dssp             HHHTCHHHHHHHHHTTCCSCC------------------CCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCB
T ss_pred             cccChHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCc
Confidence            999999999999999998776                  789999999999999999999999999999 6788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhcc-chhHHHHHhcCCccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY-FGKFSYTLSVGISIL  218 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~ga~~~  218 (222)
                      |||+|+..++.+++++|+++|++++.+|..|+||||+|++++. .++++.|.+.+++++
T Consensus       188 ~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          188 ALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC---------
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchhhh
Confidence            9999999999999999999999999999999999999998876 466777777776653

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=4.3e-39  Score=247.12  Aligned_cols=209  Identities=16%  Similarity=0.131  Sum_probs=166.3

Q ss_pred             ChHHHHHHHcCCchhHHHHH--------HHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCC
Q 027562            2 DPNLFKAAAAGNLEPFKDIA--------REVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll--------~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      .||||+|+..|+.+++++|+        +.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|
T Consensus       126 ~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~--A~~~g~~~iv~~Ll~----~ga~~~~~~~~g  199 (373)
T 2fo1_E          126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML--AVLARRRRLVAYLMK----AGADPTIYNKSE  199 (373)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCSCCCCTTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHH--HHHcChHHHHHHHHH----CCCCCcccCCCC
Confidence            48999999999999999887        5567777888899999999  999999999999887    456678889999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhh---hhhhhhhhHhhhhhhhH------------HHH------hh--------hccccC
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERA---KLLQHENEELESGIRTA------------RHM------IR--------MTNKEK  124 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~---~~~~~~~~~~~~~~~~~------------~~~------~~--------~~~~~~  124 (222)
                      .||||+|+..|+.+++++|++.+   .+++..+..+.+++..+            ..+      ++        ..+..|
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g  279 (373)
T 2fo1_E          200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  279 (373)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence            99999999999999999999987   55555444333333221            111      11        134578


Q ss_pred             chHhHHHHhcCChHHHHHHHhcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhcc
Q 027562          125 NTALHEAVCHQNVDVVEILTKED-PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY  203 (222)
Q Consensus       125 ~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~  203 (222)
                      .||||+|+..|+.+++++|++.+ .+ .+..|..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+..|+
T Consensus       280 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          280 RTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCC
Confidence            88888888888888888888776 55 66778888888888888888888888888888888888888888888888888


Q ss_pred             chhHHHHHhcCCcc
Q 027562          204 FGKFSYTLSVGISI  217 (222)
Q Consensus       204 ~~~~~~Ll~~ga~~  217 (222)
                      .+++++|+++|++.
T Consensus       359 ~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          359 HNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHHHTTC---
T ss_pred             HHHHHHHHhcCccc
Confidence            88888888888764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-38  Score=249.08  Aligned_cols=213  Identities=25%  Similarity=0.262  Sum_probs=185.6

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.++|++|++.|.+++..+..|.||||+  |+..|+.+++++|++.    +..++..+..|.||||+|+
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~--A~~~g~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   88 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM--AARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAA   88 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHH--HHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHhC----CCCCCCCCCCCCCHHHHHH
Confidence            489999999999999999999999988888999999999  9999999999999884    4567888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------HH------HhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTA---------RH------MIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------~~------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ..|+.+++++|+++|++++..+..+.+++..+         ..      .....+..|.||||+|+..|+.+++++|++.
T Consensus        89 ~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  168 (437)
T 1n11_A           89 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER  168 (437)
T ss_dssp             HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999998887666555554433         11      1233567788999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          147 DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       147 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |.+ ++..+..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..++.+++++|+++|++++..+
T Consensus       169 g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~  242 (437)
T 1n11_A          169 DAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES  242 (437)
T ss_dssp             TCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            988 66778889999999999999999999999999999988899999999999999999999999999988654

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=1.1e-38  Score=241.80  Aligned_cols=211  Identities=15%  Similarity=0.111  Sum_probs=171.3

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHH---------------------------------hhhhcCCCchhHHhhhcccc
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRL---------------------------------LTAKTKNTILHVNIRSKESE   48 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~---------------------------------~~~~~g~~~L~~~~a~~~~~   48 (222)
                      .||||+|+..|+.++|++|++.|.+++                                 ..+..|.||||+  |+..|+
T Consensus        60 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~--A~~~~~  137 (337)
T 4g8k_A           60 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFME--AAVYGK  137 (337)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHH--HHHTTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHH--HHHcCc
Confidence            489999999999999999999775432                                 356788999999  999999


Q ss_pred             cccHHHHHHHHHhC------CccccccccCCChHHHHHHHhCCHHHHHHHHHh-hhhhhhhhhHhhhhhhh---------
Q 027562           49 NASTKFVEEILEKC------PLLLLQVNAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELESGIRT---------  112 (222)
Q Consensus        49 ~~~~~~l~~~~~~~------~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~---------  112 (222)
                      .++++++++.....      .......+..|.||||+|+..|+.+++++|+++ |++++..+..+.+++..         
T Consensus       138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~  217 (337)
T 4g8k_A          138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD  217 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT
T ss_pred             HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc
Confidence            99999988753221      112234466799999999999999999999964 78877665443333221         


Q ss_pred             ----------HHHHhhhccccCchHhHHHHhcCChHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 027562          113 ----------ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       113 ----------~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  181 (222)
                                ....++.++..|.||||+|+..|+.++++.|++. |.+ .+..|..|+||||+|+..++.+++++|+++|
T Consensus       218 ~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          218 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence                      1223566889999999999999999999999986 566 7789999999999999999999999999999


Q ss_pred             CCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          182 TSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       182 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      ++++.+     +|||+|+..++.+++++||++||+||+.
T Consensus       297 Ad~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          297 ASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             CSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             CCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            998764     5999999999999999999999999974

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.4e-39  Score=218.87  Aligned_cols=161  Identities=24%  Similarity=0.360  Sum_probs=146.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      +++|+.||++|+.++|++|++.|.+++..+..|.||||+  |+..++.++++++++    .+.+++.+|..|+||||+|+
T Consensus         5 g~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~--a~~~~~~~~~~~ll~----~gad~~~~d~~g~TpLh~A~   78 (169)
T 4gpm_A            5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHH--AAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAA   78 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH--HHHcCCHHHHHHHHh----cccchhhhccCCCCHHHHHH
Confidence            468999999999999999999999999999999999999  999999999988877    46678899999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|++++.                  ++..|+||||+|+..|+.+++++|++.|++ ++..|..|+||
T Consensus        79 ~~g~~~~v~~Ll~~gadvn~------------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~Tp  139 (169)
T 4gpm_A           79 ENGHKEVVKLLISKGADVNA------------------KDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTP  139 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHCcCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCH
Confidence            99999999999999998876                  789999999999999999999999999999 67889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccC
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHE  187 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~  187 (222)
                      ||+|+..++.+++++|+++|++++..
T Consensus       140 L~~A~~~g~~~iv~~Ll~~GA~ie~~  165 (169)
T 4gpm_A          140 LDLAREHGNEEVVKLLEKQGGWLEHH  165 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHTC-------
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCCC
Confidence            99999999999999999999998753

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=227.16  Aligned_cols=212  Identities=18%  Similarity=0.126  Sum_probs=159.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .|+|+.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++.   +.......+..|.||||.|+
T Consensus        10 ~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~---~~~~~~~~~~~~~t~L~~A~   84 (240)
T 3eu9_A           10 TWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHW--AAINNRIDLVKYYISK---GAIVDQLGGDLNSTPLHWAT   84 (240)
T ss_dssp             GCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHT---TCCTTCCBTTTTBCHHHHHH
T ss_pred             chHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHH--HHHhCCHHHHHHHHHc---CCcchhhcCCcCCChhHHHH
Confidence            368999999999999999999998888888899999999  9999999999988873   32233344556899999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------------HHHhhhccccCchHhHHHHhcCC-hHHHHHHHh
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQN-VDVVEILTK  145 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~a~~~~~-~~~~~~Ll~  145 (222)
                      ..|+.+++++|++.|++++..+..+.+++..+               ...++..+..|.||+|.|+..+. .+++++|++
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~  164 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT  164 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh
Confidence            99999999999999888776544433333222               11233456677788888875544 677777777


Q ss_pred             cCCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          146 EDPDYPYSANN-DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       146 ~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      .|.+. +..+. .|.||||+|+..++.+++++|+++|++++.++..|.||+++|+..++.+++++|+++|++..+
T Consensus       165 ~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          165 FNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             TTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             cCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            77773 34443 778888888888888888888888888888888888888888888888888888888877654

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=3e-38  Score=226.20  Aligned_cols=186  Identities=20%  Similarity=0.173  Sum_probs=168.5

Q ss_pred             cCCchhHHHHHHHHHHHHh-hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHH
Q 027562           11 AGNLEPFKDIAREVIKRLL-TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIV   89 (222)
Q Consensus        11 ~g~~~~v~~ll~~~~~~~~-~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~   89 (222)
                      .|+.+++++|++.|.+.+. .+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+..|+.+++
T Consensus         1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v   74 (223)
T 2f8y_A            1 GDAPAVISDFIYQGASLHNQTDRTGETALHL--AARYSRSDAAKRLLE----ASADANIQDNMGRTPLHAAVSADAQGVF   74 (223)
T ss_dssp             ----CCEETTEETTCCTTCCCTTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCcHHHHHHHHHcCCCcccccCCCCCchHHH--HHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            3788999999999998874 48899999999  999999999999987    3566788899999999999999999999


Q ss_pred             HHHHHhhh-hhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHc
Q 027562           90 RVLVERAK-LLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADY  168 (222)
Q Consensus        90 ~~Ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~  168 (222)
                      ++|++.+. .++.                  .+..|.||||+|+..++.+++++|++.|++ .+..+..|+||||+|+..
T Consensus        75 ~~Ll~~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  135 (223)
T 2f8y_A           75 QILIRNRATDLDA------------------RMHDGTTPLILAARLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAV  135 (223)
T ss_dssp             HHHHHBTTSCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHT
T ss_pred             HHHHHcCCCCccc------------------CCCCCCcHHHHHHHhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHc
Confidence            99999876 4443                  788999999999999999999999999999 668899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          169 RSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       169 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++..+
T Consensus       136 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  188 (223)
T 2f8y_A          136 NNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITD  188 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            99999999999999999999999999999999999999999999999998764

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=230.39  Aligned_cols=192  Identities=17%  Similarity=0.128  Sum_probs=153.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHH-----------HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccc
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIK-----------RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVN   70 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~-----------~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   70 (222)
                      +|+||+|+..|+.+.+..++..+..           .+..+..|.||||+  |+..|+.+++++|++    .+..++..+
T Consensus        16 ~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~--Aa~~g~~~~v~~Ll~----~g~~~~~~~   89 (285)
T 3d9h_A           16 PRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHE--AAIHGHQLSLRNLIS----QGWAVNIIT   89 (285)
T ss_dssp             --------------------------CCSEECCCCTTCSSSCCSCCHHHH--HHHTTCHHHHHHHHH----TTCCSCEEC
T ss_pred             HHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHH--HHHcCCHHHHHHHHH----CCCCCCCcC
Confidence            5899999999999888888776543           12567889999999  999999999999887    356688899


Q ss_pred             cCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCC
Q 027562           71 AKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY  150 (222)
Q Consensus        71 ~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  150 (222)
                      ..|.||||+|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|++.
T Consensus        90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~  151 (285)
T 3d9h_A           90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNG------------------VTADWHTPLFNACVSGSWDCVNLLLQHGASV  151 (285)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS
T ss_pred             CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC
Confidence            9999999999999999999999999988776                  7899999999999999999999999999984


Q ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          151 PYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       151 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                       +. +..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|++++.
T Consensus       152 -~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          152 -QP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ  218 (285)
T ss_dssp             -SC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             -CC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC
Confidence             33 44599999999999999999999999999999999999999999999999999999999999985

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=3.9e-38  Score=241.77  Aligned_cols=179  Identities=12%  Similarity=0.114  Sum_probs=151.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||+|+..|+.++|++|++.|.+++..+..|.||||+  |+..|+.+++++|++.... ...++..+..|.||||+|+
T Consensus       167 ~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~--A~~~g~~~~v~~Ll~~~~~-~~~~~~~d~~g~t~L~~A~  243 (373)
T 2fo1_E          167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ--AAANRDFGMMVYMLNSTKL-KGDIEELDRNGMTALMIVA  243 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHH--HHHTTCHHHHHHHTTSHHH-HHTTSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHH--HHHCCCHHHHHHHHhcCcc-ccChhhcCCCCCCHHHHHH
Confidence            589999999999999999999999999899999999999  9999999999999874311 1356778999999999999


Q ss_pred             HhC---CHHHHHHHHHhhhhhhhh--------hhHhhhhhhhH----------------HHHhhhccccCchHhHHHHhc
Q 027562           82 KFG---HSDIVRVLVERAKLLQHE--------NEELESGIRTA----------------RHMIRMTNKEKNTALHEAVCH  134 (222)
Q Consensus        82 ~~~---~~~~~~~Ll~~~~~~~~~--------~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~a~~~  134 (222)
                      ..+   +.+++++|++.|++++..        +..+.+++..+                ...++..+..|.||||+|+..
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence            998   899999999999888752        22222333222                134556788999999999999


Q ss_pred             CChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC
Q 027562          135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA  184 (222)
Q Consensus       135 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~  184 (222)
                      |+.+++++|++.|++ .+..|..|+|||++|+..++.+++++|++++++.
T Consensus       324 g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          324 GRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             CCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            999999999999999 6788999999999999999999999999998763

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=1.7e-37  Score=236.16  Aligned_cols=196  Identities=19%  Similarity=0.226  Sum_probs=177.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .++|+.|+..|+.+.+++++.. +.+.+..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   98 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL--AAGYNRVRIVQLLLQ----HGADVHAKDKGGLVPLHNA   98 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCccCCCCCcHHHHH
Confidence            3789999999999999999985 67777888899999999  999999999999988    4567888999999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCC--------
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY--------  152 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~--------  152 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++...        
T Consensus        99 ~~~g~~~iv~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           99 CSYGHYEVTELLLKHGACVNA------------------MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             HHCCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            999999999999999988776                  788999999999999999999999999887321        


Q ss_pred             ---------------------------------------------CCCCCCCCHHHHHHHc---CCHHHHHHHHhcCCCC
Q 027562          153 ---------------------------------------------SANNDGKTPLYMAADY---RSSDMVLALLENSTSA  184 (222)
Q Consensus       153 ---------------------------------------------~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~g~~~  184 (222)
                                                                   ..+..|.||||+|+..   +..+++++|++.|+++
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence                                                         1235678999999998   5589999999999999


Q ss_pred             ccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          185 SHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       185 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +.++..|.||||+|+..|+.+++++|+++|++++..+
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d  277 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD  277 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            9999999999999999999999999999999999765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=1.3e-37  Score=224.78  Aligned_cols=187  Identities=23%  Similarity=0.277  Sum_probs=172.6

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++.   ++..++..+..|.||||.|+
T Consensus        45 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~  119 (237)
T 3b7b_A           45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHL--AAKKGHYEVVQYLLSN---GQMDVNCQDDGGWTPMIWAT  119 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHH--HHHTTCHHHHHHHHTT---TCCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHhC---CCCCcccCCCCCCCHHHHHH
Confidence            479999999999999999999999888888999999999  9999999999888773   44667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|++.|++++.                  .+..|.||+|+|+..|+.+++++|++.|++ ++..|..|.||
T Consensus       120 ~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~  180 (237)
T 3b7b_A          120 EYKHVDLVKLLLSKGSDINI------------------RDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSP  180 (237)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCH
T ss_pred             HcCCHHHHHHHHHCCCCCCc------------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            99999999999999988766                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHh
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                      ||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+.+..|++
T Consensus       181 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~  231 (237)
T 3b7b_A          181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK  231 (237)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999876666554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=4.2e-37  Score=222.24  Aligned_cols=178  Identities=21%  Similarity=0.210  Sum_probs=149.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .||||.|+..|+.+++++|++.+.+.+ ..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A  116 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW--ATRQGHLSMVVQLMK----YGADPSLIDGEGCSCIHLA  116 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH--HHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHH
Confidence            479999999999999999999998876 444569999999  999999999999887    3556778899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHH----------------HHhhhccc-cCchHhHHHHhcCChHHHHHH
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTAR----------------HMIRMTNK-EKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~-~~~~~l~~a~~~~~~~~~~~L  143 (222)
                      +..|+.+++++|++.|++++..+..+.+++....                ..++..+. .|.||||+|+..|+.+++++|
T Consensus       117 ~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  196 (240)
T 3eu9_A          117 AQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL  196 (240)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHH
Confidence            9999999999999999988877665555544331                12233454 789999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 027562          144 TKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH  186 (222)
Q Consensus       144 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  186 (222)
                      ++.|++ ++..+..|.||+++|+..++.+++++|++++++...
T Consensus       197 l~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~~~  238 (240)
T 3eu9_A          197 LEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY  238 (240)
T ss_dssp             HHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC-----
T ss_pred             HHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhccCc
Confidence            999999 678899999999999999999999999999887643

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=4.6e-37  Score=220.68  Aligned_cols=186  Identities=16%  Similarity=0.111  Sum_probs=167.3

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH--HHHHh-hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV--IKRLL-TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~--~~~~~-~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      .||||.|+..|+.+++++|++.|  .+.+. .+..|.||||+  |+..|+.+++++|++..  ....++..+..|.||||
T Consensus        37 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~g~t~L~  112 (228)
T 2dzn_A           37 RIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHI--ACSVGNLEVVKSLYDRP--LKPDLNKITNQGVTCLH  112 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHH--HHHHCCHHHHHHHHSSS--SCCCTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHH--HHHcCCHHHHHHHHhCC--CCcccccCCcCCCCHHH
Confidence            58999999999999999999998  55555 77899999999  99999999998887731  12567888999999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcC-CCCCCCCCCC
Q 027562           79 VAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED-PDYPYSANND  157 (222)
Q Consensus        79 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~  157 (222)
                      .|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.| .+ .+..|..
T Consensus       113 ~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~  173 (228)
T 2dzn_A          113 LAVGKKWFEVSQFLIENGASVRI------------------KDKFNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQ  173 (228)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTT
T ss_pred             HHHHcCCHhHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCC
Confidence            99999999999999999988776                  7889999999999999999999999999 55 7788999


Q ss_pred             CCCHHHHHHHcCCHHHHHHHH-hcCCCCccCCCCCccHHHHHHHhccchhHHHHHhc
Q 027562          158 GKTPLYMAADYRSSDMVLALL-ENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      |+||||+|+..++.+++++|+ ++|++++.+|..|.||+++|+.   .++.++|+++
T Consensus       174 g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~---~~~~~~l~~~  227 (228)
T 2dzn_A          174 GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNN  227 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSS---TTHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHH---HHHHHHHHhc
Confidence            999999999999999999999 8999999999999999999974   4778888764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=7.2e-37  Score=225.65  Aligned_cols=189  Identities=21%  Similarity=0.195  Sum_probs=173.4

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHH--HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIK--RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      +++|.|+..|+++.++.+++.+.+  ++..|..|.||||+  |+..|+.+++++|++.   +...++..+..|+||||+|
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~--A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~a  152 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHY--SVSHANFPVVQQLLDS---GVCKVDKQNRAGYSPIMLT  152 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHH--HHHTTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHG
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHH--HHHCCCHHHHHHHHHC---CCCcCCCCCCCCCCHHHHH
Confidence            567899999999999999998777  66889999999999  9999999999999873   3347888999999999999


Q ss_pred             H-----HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC
Q 027562           81 A-----KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN  155 (222)
Q Consensus        81 ~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~  155 (222)
                      +     ..++.+++++|++.|...+.                  .+..|.||||+|+..|+.+++++|++.|++ ++..|
T Consensus       153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d  213 (276)
T 4hbd_A          153 ALATLKTQDDIETVLQLFRLGNINAK------------------ASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQD  213 (276)
T ss_dssp             GGCCCCSHHHHHHHHHHHHHSCTTCC------------------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred             HHHHhhhhhhHHHHHHHHHcCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCC
Confidence            9     66889999999999976655                  678899999999999999999999999999 67889


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          156 NDGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       156 ~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                      ..|+||||+|+..++.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|++++.
T Consensus       214 ~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          214 DDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            999999999999999999999999 899999999999999999999999999999999863

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.3e-37  Score=226.90  Aligned_cols=181  Identities=23%  Similarity=0.255  Sum_probs=150.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHh--------------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEK--------------------   61 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~--------------------   61 (222)
                      .||||+|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++....                    
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~--A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL--ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHH--HTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH--HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            489999999999999999999999999889999999999  9999999999998763211                    


Q ss_pred             -----------------------CCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhh
Q 027562           62 -----------------------CPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIR  118 (222)
Q Consensus        62 -----------------------~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  118 (222)
                                             .+..++..+..|.||||+|+..|+.+++++|+++|++++.                 
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-----------------  186 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-----------------  186 (282)
T ss_dssp             --------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-----------------
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCC-----------------
Confidence                                   1123667788999999999999999999999999998776                 


Q ss_pred             hcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHH
Q 027562          119 MTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHA  197 (222)
Q Consensus       119 ~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  197 (222)
                       .+ ..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++|++++.++..|.||+++
T Consensus       187 -~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~  264 (282)
T 1oy3_D          187 -PEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS  264 (282)
T ss_dssp             -CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---------
T ss_pred             -CCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccc
Confidence             45 4599999999999999999999999999 67899999999999999999999999999999999999999999999


Q ss_pred             HHHhcc
Q 027562          198 AAMKSY  203 (222)
Q Consensus       198 a~~~~~  203 (222)
                      |.....
T Consensus       265 a~~~~~  270 (282)
T 1oy3_D          265 SGSDSD  270 (282)
T ss_dssp             ------
T ss_pred             cCCccc
Confidence            987654

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=2.9e-35  Score=206.09  Aligned_cols=163  Identities=21%  Similarity=0.166  Sum_probs=152.5

Q ss_pred             HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHh
Q 027562           27 RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL  106 (222)
Q Consensus        27 ~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  106 (222)
                      .+..+..|.||||+  |+..|+.+++++|++..    ..++..+..|.||||+|+..|+.+++++|++.|++++.     
T Consensus        28 ~n~~d~~g~t~L~~--A~~~g~~~~v~~Ll~~~----~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----   96 (192)
T 2rfm_A           28 RNYRDSYNRTPLMV--ACMLGMENAIDKLVENF----DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-----   96 (192)
T ss_dssp             HTCCCTTCCCHHHH--HHHHTCGGGHHHHHHHH----CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-----
T ss_pred             HhCcCCCCCCHHHH--HHHcCCHHHHHHHHHhc----cccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-----
Confidence            44678899999999  99999999999999853    35677889999999999999999999999999988766     


Q ss_pred             hhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 027562          107 ESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH  186 (222)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~  186 (222)
                                   .+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..++.+++++|+++|++++.
T Consensus        97 -------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A           97 -------------KDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             -------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             -------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence                         788999999999999999999999999999 668899999999999999999999999999999999


Q ss_pred             CCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          187 EGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       187 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      ++..|.||+++|+..++.+++++|+++|
T Consensus       163 ~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          163 RDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             BCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            9999999999999999999999999987

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.1e-37  Score=227.48  Aligned_cols=188  Identities=14%  Similarity=0.081  Sum_probs=171.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCC-ChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKG-ETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~t~L~~a   80 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++.    +..++..+..| .||||.|
T Consensus        63 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A  136 (285)
T 3kea_A           63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYY--AVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHA  136 (285)
T ss_dssp             CCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHH--HHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHH
Confidence            489999999999999999999999999899999999999  9999999999999885    55678889999 7999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|+....                   ...|.||||+|+..|+.+++++|++.|++ ++..+..|+|
T Consensus       137 ~~~~~~~~v~~Ll~~g~~~~~-------------------~~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t  196 (285)
T 3kea_A          137 VMLNDVSIVSYFLSEIPSTFD-------------------LAILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFI  196 (285)
T ss_dssp             HHTTCHHHHHHHHTTSCTTCC-------------------CSTHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCC
T ss_pred             HHcCCHHHHHHHHhCCCcccc-------------------ccCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCC
Confidence            999999999999999876422                   23899999999999999999999999998 6688999999


Q ss_pred             H-HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccccC
Q 027562          161 P-LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       161 ~-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      | ||+|+..++.+++++|+++|++++..+.       .|+..++.+++++|+++|+++....|
T Consensus       197 ~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~~~~~~  252 (285)
T 3kea_A          197 PDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHVEYKSDSY  252 (285)
T ss_dssp             TTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHHTTCTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCCCCccc
Confidence            8 9999999999999999999999999873       56778999999999999999876554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=5.3e-35  Score=201.25  Aligned_cols=164  Identities=25%  Similarity=0.224  Sum_probs=147.8

Q ss_pred             CCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH
Q 027562           34 KNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA  113 (222)
Q Consensus        34 g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  113 (222)
                      +.+|||.  |+..|+.+.++.+++   .....++..+..|.||||+|+..|+.+++++|+++|++++.            
T Consensus         2 ~~~~L~~--A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   64 (172)
T 3v30_A            2 DSLSIHQ--LAAQGELDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI------------   64 (172)
T ss_dssp             --CCHHH--HHHTTCHHHHHHHHT---TCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC------------
T ss_pred             chhhHHH--HHHcCCHHHHHHHHH---cCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh------------
Confidence            5689999  999999888888766   35555788899999999999999999999999999988776            


Q ss_pred             HHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCcc
Q 027562          114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKT  193 (222)
Q Consensus       114 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  193 (222)
                            .+..|.||||+|+..|+.+++++|++.|++ .+..|..|+||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        65 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  137 (172)
T 3v30_A           65 ------LAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYT  137 (172)
T ss_dssp             ------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ------hcccCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                  788999999999999999999999999998 6688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          194 ALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ||++|+..++.+++++|+++|+++....
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          138 PMDLAVALGYRKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999887654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=3e-36  Score=217.62  Aligned_cols=173  Identities=24%  Similarity=0.184  Sum_probs=153.3

Q ss_pred             hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhh
Q 027562           29 LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELES  108 (222)
Q Consensus        29 ~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  108 (222)
                      ..|..|.||||+  |+..|+.++++.|++.....+..++..+..|.||||+|+..|+.+++++|+++|++++.       
T Consensus         3 ~~d~~g~t~L~~--A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-------   73 (236)
T 1ikn_D            3 QLTEDGDSFLHL--AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-------   73 (236)
T ss_dssp             ----CCCCTTHH--HHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-------
T ss_pred             cCCCCCCchhHH--HHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-------
Confidence            467899999999  99999999999998877666667889999999999999999999999999999988776       


Q ss_pred             hhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDY-----PYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                                 .+..|.||||+|+..|+.+++++|++.+.+.     .+..+..|.||||+|+..++.+++++|+++|++
T Consensus        74 -----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  142 (236)
T 1ikn_D           74 -----------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD  142 (236)
T ss_dssp             -----------CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -----------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                       7889999999999999999999999998642     346778899999999999999999999999999


Q ss_pred             CccCCC-CCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          184 ASHEGP-NGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       184 ~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ++.++. .|.||||+|+..++.+++++|+++|++++..+
T Consensus       143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            999997 99999999999999999999999999999765

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=7e-35  Score=199.71  Aligned_cols=161  Identities=22%  Similarity=0.211  Sum_probs=150.0

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      .|.||||.  |+..|+.++++++++.    +..++..+..|.||||+|+..|+.+++++|++.|++++.           
T Consensus         2 ~~~t~L~~--A~~~g~~~~v~~ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-----------   64 (167)
T 3v31_A            2 ANSLSVHQ--LAAQGEMLYLATRIEQ----ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-----------   64 (167)
T ss_dssp             TTCCCHHH--HHHTTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCcchHHH--HHHCCCHHHHHHHHHc----CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-----------
Confidence            58899999  9999999999998874    455788899999999999999999999999999988776           


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCc
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGK  192 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~  192 (222)
                             .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.||||+|+..++.+++++|+++|++++.++..|.
T Consensus        65 -------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~  136 (167)
T 3v31_A           65 -------LGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY  136 (167)
T ss_dssp             -------CCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             -------cCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC
Confidence                   788999999999999999999999999999 668899999999999999999999999999999999999999


Q ss_pred             cHHHHHHHhccchhHHHHHhcCCccc
Q 027562          193 TALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       193 t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      ||+++|+..|+.+++++|+++++++.
T Consensus       137 t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          137 NSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=7.9e-35  Score=201.64  Aligned_cols=167  Identities=21%  Similarity=0.223  Sum_probs=152.5

Q ss_pred             hcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhh
Q 027562           32 KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIR  111 (222)
Q Consensus        32 ~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  111 (222)
                      .++.++||.  |+..|+.++++.+++   ..+..++..+..|.||||.|+..|+.+++++|++.|++++.          
T Consensus         3 ~~~~~~l~~--A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   67 (179)
T 3f6q_A            3 PEFMDDIFT--QCREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV----------   67 (179)
T ss_dssp             ----CCHHH--HHHHTCHHHHHHHHH---CTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------
T ss_pred             HHHHHHHHH--HHHcCCHHHHHHHHh---cCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC----------
Confidence            468899999  999999999988876   45667888999999999999999999999999999988776          


Q ss_pred             hHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCC
Q 027562          112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG  191 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  191 (222)
                              .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.||||+|+..++.+++++|+++|++++.++..|
T Consensus        68 --------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  138 (179)
T 3f6q_A           68 --------MNRGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG  138 (179)
T ss_dssp             --------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred             --------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence                    788999999999999999999999999999 66889999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHhccchhHHHHHhcCCccccccC
Q 027562          192 KTALHAAAMKSYFGKFSYTLSVGISILISFY  222 (222)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~~  222 (222)
                      .||+++|+..++.+++++|+++|++++...+
T Consensus       139 ~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~  169 (179)
T 3f6q_A          139 EMPVDKAKAPLRELLRERAEKMGQNLNRIPY  169 (179)
T ss_dssp             CCGGGGSCHHHHHHHHHHHHHTTCCCSCBCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhhcCcccCCc
Confidence            9999999999999999999999999987543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=5.5e-35  Score=199.22  Aligned_cols=158  Identities=20%  Similarity=0.208  Sum_probs=136.0

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      ...||||.  |+..|+.+++++|++    .+..++..+..|.||||+|+. |+.+++++|++.|++++.           
T Consensus         4 ~~~~~L~~--A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-----------   65 (162)
T 1ihb_A            4 PWGNELAS--AAARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-----------   65 (162)
T ss_dssp             -CHHHHHH--HHHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-----------
T ss_pred             hHhhHHHH--HHHcCCHHHHHHHHh----CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-----------
Confidence            45688888  888888888888775    455677788889999999888 899999999998887765           


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CccCCCCC
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS-ASHEGPNG  191 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~g  191 (222)
                             .+..|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|+++|++ ++.++..|
T Consensus        66 -------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  137 (162)
T 1ihb_A           66 -------KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  137 (162)
T ss_dssp             -------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             -------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCC
Confidence                   678899999999999999999999999988 667888999999999999999999999999988 58899999


Q ss_pred             ccHHHHHHHhccchhHHHHHhcCCc
Q 027562          192 KTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      .||||+|+..++.+++++|+++|||
T Consensus       138 ~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          138 DTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=4.2e-34  Score=196.19  Aligned_cols=160  Identities=23%  Similarity=0.282  Sum_probs=146.2

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      ....+.++|+.  |+..|+.+++++|++    .+..++..+..|.||||.|+..|+.+++++|++.|++++.        
T Consensus        10 ~~~~~~~~l~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   75 (169)
T 2y1l_E           10 HGSDLGKKLLE--AARAGRDDEVRILMA----NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--------   75 (169)
T ss_dssp             ---CHHHHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred             CCCcccchHHH--HHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--------
Confidence            44567889999  999999999999887    3566788899999999999999999999999999988766        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCC
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP  189 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  189 (222)
                                .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.||||+|+..++.+++++|+++|++++.++.
T Consensus        76 ----------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  144 (169)
T 2y1l_E           76 ----------VDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK  144 (169)
T ss_dssp             ----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence                      788999999999999999999999999999 668899999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHhccchhHHHHHhcC
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      .|.||+++|+..++.+++++|+++|
T Consensus       145 ~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          145 FGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999999999999999999999987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=8.9e-34  Score=204.10  Aligned_cols=167  Identities=27%  Similarity=0.234  Sum_probs=148.6

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      .|.||||+  |+..|+.++++.|++   ..+..++..|..|+||||+|+..|+.+++++|++.|+++...          
T Consensus         2 ~g~t~L~~--A~~~g~~~~v~~Ll~---~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~----------   66 (232)
T 2rfa_A            2 IWESPLLL--AAKENDVQALSKLLK---FEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE----------   66 (232)
T ss_dssp             CTTCHHHH--HHHTTCHHHHHHHHT---TTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGC----------
T ss_pred             CCCCHHHH--HHHcCCHHHHHHHHH---hcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccc----------
Confidence            58999999  999999998888876   346778899999999999999999999999999999876321          


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC-------------CCCCHHHHHHHcCCHHHHHHHHh
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN-------------DGKTPLYMAADYRSSDMVLALLE  179 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------------~g~t~l~~a~~~~~~~~~~~Ll~  179 (222)
                         ..+..+..|.||||+|+..|+.+++++|++.|++ .+..+.             .|.||||+|+..++.+++++|++
T Consensus        67 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  142 (232)
T 2rfa_A           67 ---PMTSELYEGQTALHIAVINQNVNLVRALLARGAS-VSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE  142 (232)
T ss_dssp             ---CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH
T ss_pred             ---cccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC-CCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence               0123577899999999999999999999999988 444443             79999999999999999999999


Q ss_pred             cCCCCccCCCCCccHHHHHHHhccchhH----HHHHhcCCccc
Q 027562          180 NSTSASHEGPNGKTALHAAAMKSYFGKF----SYTLSVGISIL  218 (222)
Q Consensus       180 ~g~~~~~~~~~g~t~l~~a~~~~~~~~~----~~Ll~~ga~~~  218 (222)
                      +|++++.+|..|+||||+|+..++.+++    ++|+++|++++
T Consensus       143 ~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          143 HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            9999999999999999999999999988    99999999884

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.8e-34  Score=210.78  Aligned_cols=175  Identities=21%  Similarity=0.170  Sum_probs=151.7

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccc----cccCCChHHHHHHHh---CCHHHHHHHHHhhhhhhhhhhH
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQ----VNAKGETPLHVAAKF---GHSDIVRVLVERAKLLQHENEE  105 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~  105 (222)
                      .|.||||.  |+..|+.+.++.+++++...+..++.    .+..|.||||+|+..   |+.+++++|++.|++.+.....
T Consensus         1 ~G~t~L~~--A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFS--VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHH--HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHH--HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            37899999  99999999998888887777777887    899999999999999   9999999999999887642100


Q ss_pred             hhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCC-------------CCCHHHHHHHcCCHH
Q 027562          106 LESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND-------------GKTPLYMAADYRSSD  172 (222)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~-------------g~t~l~~a~~~~~~~  172 (222)
                             ........+..|.||||+|+..|+.+++++|++.|++ ++..+..             |.||||+|+..++.+
T Consensus        79 -------~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~  150 (256)
T 2etb_A           79 -------VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD  150 (256)
T ss_dssp             -------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred             -------cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence                   0000112346799999999999999999999999998 5566665             999999999999999


Q ss_pred             HHHHHHh---cCCCCccCCCCCccHHHHHHH--hccch-------hHHHHHhcCCcc
Q 027562          173 MVLALLE---NSTSASHEGPNGKTALHAAAM--KSYFG-------KFSYTLSVGISI  217 (222)
Q Consensus       173 ~~~~Ll~---~g~~~~~~~~~g~t~l~~a~~--~~~~~-------~~~~Ll~~ga~~  217 (222)
                      ++++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++
T Consensus       151 ~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          151 VVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999   999999999999999999999  77888       999999999999

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=1.3e-34  Score=197.38  Aligned_cols=158  Identities=22%  Similarity=0.197  Sum_probs=145.8

Q ss_pred             CChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            1 MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      ++|||+.|+..|+.+++++|++.|.+++..+..|.||||+  |+. |+.+++++|++    .+..++..+..|.||||.|
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~--A~~-~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV--MKL-GNPEIARRLLL----RGANPDLKDRTGFAVIHDA   77 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHH--CCS-SCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHH--HHc-CcHHHHHHHHH----cCCCCCCCCCCCCCHHHHH
Confidence            3689999999999999999999999988889999999999  888 99999999887    3566788899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++..+..+..|.|
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  139 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCc
Confidence            999999999999999988776                  78899999999999999999999999999866788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCC
Q 027562          161 PLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                      |||+|+..++.+++++|+++|++
T Consensus       140 ~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          140 ACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHHcCCHHHHHHHHHhCCC
Confidence            99999999999999999999985

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=5.7e-34  Score=209.97  Aligned_cols=180  Identities=21%  Similarity=0.224  Sum_probs=152.5

Q ss_pred             HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCcccc----ccccCCChHHHHHHHh---CCHHHHHHHHHhhh
Q 027562           25 IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLL----QVNAKGETPLHVAAKF---GHSDIVRVLVERAK   97 (222)
Q Consensus        25 ~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~   97 (222)
                      ......+..|.||||+  |+..|+.++++.|++.+...+..++    ..+..|+||||+|+..   |+.+++++|++.|+
T Consensus         4 a~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga   81 (273)
T 2pnn_A            4 AGEKPPRLYDRRSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVAR   81 (273)
T ss_dssp             -------CCCHHHHHH--HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHH
T ss_pred             ccCCCCCcccchHHHH--HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhc
Confidence            3344578899999999  9999999999999998776665554    4588999999999987   99999999999998


Q ss_pred             hhhhhhhHhhhhhhhHHHHhhh----ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC--------------CCC
Q 027562           98 LLQHENEELESGIRTARHMIRM----TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN--------------DGK  159 (222)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~--------------~g~  159 (222)
                      +.+..           ...++.    .+..|.||||+|+..|+.+++++|++.|++ ++..+.              .|.
T Consensus        82 ~~~~~-----------~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~  149 (273)
T 2pnn_A           82 KTDSL-----------KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGE  149 (273)
T ss_dssp             HTTCH-----------HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCB
T ss_pred             cccch-----------hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCC
Confidence            65431           111222    567899999999999999999999999999 556665              799


Q ss_pred             CHHHHHHHcCCHHHHHHHHh---cCCCCccCCCCCccHHHHHHHhcc---------chhHHHHHhcCCccc
Q 027562          160 TPLYMAADYRSSDMVLALLE---NSTSASHEGPNGKTALHAAAMKSY---------FGKFSYTLSVGISIL  218 (222)
Q Consensus       160 t~l~~a~~~~~~~~~~~Ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~ga~~~  218 (222)
                      ||||+|+..++.+++++|++   +|++++.++..|+||||+|+..++         .+++++|+++|++++
T Consensus       150 tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n  220 (273)
T 2pnn_A          150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLH  220 (273)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcc
Confidence            99999999999999999999   999999999999999999999988         799999999999996

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=1.1e-34  Score=199.62  Aligned_cols=168  Identities=21%  Similarity=0.155  Sum_probs=149.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHH-HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIK-RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .||||.|+..|+.+.+++|++.+.+ .+..+..|.||||+  |+..|+.+++++|++.    +..++..+..|.||||+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A   76 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIW--ASAFGEIETVRFLLEW----GADPHILAKERESALSLA   76 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHH--HHHTTCHHHHHHHHHH----TCCTTCCCTTCCCHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHH--HHHcCCHHHHHHHHHc----CCCchhhcccCCCHHHHH
Confidence            3789999999999999999998876 56778899999999  9999999999999874    456788899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ .+..+..|.|
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t  137 (172)
T 3v30_A           77 STGGYTDIVGLLLERDVDINI------------------YDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYT  137 (172)
T ss_dssp             HHTTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             HHCCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCC
Confidence            999999999999999988776                  789999999999999999999999999999 6688999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccH
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTA  194 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  194 (222)
                      |||+|+..++.+++++|+++|+++...+..|.||
T Consensus       138 ~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          138 PMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            9999999999999999999999999988888887

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=1.9e-34  Score=197.15  Aligned_cols=161  Identities=19%  Similarity=0.177  Sum_probs=145.5

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      .+..|.+|||.  |+..|+.++++.+++   ..+...+..+..|.||||+|+..|+.+++++|+++|++++.        
T Consensus         4 ~~~~~~~~l~~--A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   70 (165)
T 3twr_A            4 GNSEADRQLLE--AAKAGDVETVKKLCT---VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA--------   70 (165)
T ss_dssp             --CHHHHHHHH--HHHHTCHHHHHHHCC---TTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred             CcchhhHHHHH--HHHhCCHHHHHHHHH---cCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc--------
Confidence            46688999999  999999988888876   34556677888999999999999999999999999988776        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCC
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP  189 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  189 (222)
                                .+..|.||||+|+..|+.+++++|++.|++ .+..|..|+||||+|+..++.+++++|+++|++++.++.
T Consensus        71 ----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  139 (165)
T 3twr_A           71 ----------KDKGGLVPLHNACSYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR  139 (165)
T ss_dssp             ----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             ----------cCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCC
Confidence                      788999999999999999999999999999 668899999999999999999999999999999999999


Q ss_pred             CCccHHHHHHHhccchhHHHHHhcCC
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                      .|.||+++|+. ++.+++++|+++||
T Consensus       140 ~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          140 DGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCCChhHhHhc-CChHHHHHHhhccc
Confidence            99999999877 88999999999997

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=2.5e-33  Score=197.52  Aligned_cols=167  Identities=19%  Similarity=0.177  Sum_probs=152.1

Q ss_pred             hcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhh
Q 027562           32 KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIR  111 (222)
Q Consensus        32 ~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  111 (222)
                      ..+.||||.  |+..|+.+.++.++.   ..+..++..+..|.||||+|+..|+.+++++|++.|++++.          
T Consensus         3 ~~~~~~L~~--A~~~g~~~~v~~ll~---~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------   67 (201)
T 3hra_A            3 TYEVGALLE--AANQRDTKKVKEILQ---DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL----------   67 (201)
T ss_dssp             CCCTTHHHH--HHHTTCHHHHHHHHT---CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------
T ss_pred             cccccHHHH--HHHhccHHHHHHHHH---cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------
Confidence            468999999  999999888877765   45557888999999999999999999999999999998776          


Q ss_pred             hHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC-CCCccCCCC
Q 027562          112 TARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS-TSASHEGPN  190 (222)
Q Consensus       112 ~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~  190 (222)
                              .+..|.||+|+|+..|+.+++++|++.+....+..+..|.||||+|+..++.+++++|+++| ++++.++..
T Consensus        68 --------~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  139 (201)
T 3hra_A           68 --------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDF  139 (201)
T ss_dssp             --------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTT
T ss_pred             --------CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCC
Confidence                    78899999999999999999999996554337788999999999999999999999999999 999999999


Q ss_pred             CccHHHHHHHhcc-----chhHHHHHhcCCcccccc
Q 027562          191 GKTALHAAAMKSY-----FGKFSYTLSVGISILISF  221 (222)
Q Consensus       191 g~t~l~~a~~~~~-----~~~~~~Ll~~ga~~~~~~  221 (222)
                      |.||||+|+..++     .+++++|+++|++++..+
T Consensus       140 g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  175 (201)
T 3hra_A          140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD  175 (201)
T ss_dssp             SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC
Confidence            9999999999987     899999999999999865

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=2.7e-34  Score=214.23  Aligned_cols=204  Identities=21%  Similarity=0.205  Sum_probs=168.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~  147 (299)
T 1s70_B           74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA--AASCGYLDIAEYLIS----QGAHVGAVNSEGDTPLDIAE  147 (299)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH--HHHcCCHHHHHHHHh----CCCCCCCcCCCCCCHHHHHH
Confidence            489999999999999999999999999899999999999  999999999999988    35667888999999999999


Q ss_pred             HhCCHHHHHHHHHh-hhhhhhhhhHhhhhhh-hHHHHh-------hhccccCchHhHHHHhcCChHHHHHHHhcCCCCCC
Q 027562           82 KFGHSDIVRVLVER-AKLLQHENEELESGIR-TARHMI-------RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  152 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  152 (222)
                      ..++.+++++++.. +.+++........... .....+       ...+..|.||||+|+..|+.+++++|++.|++ ++
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~  226 (299)
T 1s70_B          148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VN  226 (299)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TT
T ss_pred             hcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CC
Confidence            99999999988764 3443332222111111 111111       12456799999999999999999999999999 67


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhc
Q 027562          153 SANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       153 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      ..|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+.. ..+.++.+++.
T Consensus       227 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~  286 (299)
T 1s70_B          227 IKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED-ILGYLEELQKK  286 (299)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred             CcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999999764 44555555544

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=4.9e-34  Score=215.36  Aligned_cols=187  Identities=17%  Similarity=0.159  Sum_probs=147.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccc---cccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESE---NASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      .||||+|+..|+.++|++|++.|.+++..+..|.||||+  |+..|+   .++++.+++.+..   .++..+..|+||||
T Consensus       132 ~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~--A~~~g~~~~~~~~~~ll~~~~~---~~~~~d~~g~tpLh  206 (327)
T 1sw6_A          132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK--AVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTILH  206 (327)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHH--HHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHH--HHHhcccccHHHHHHHHHhhhc---cccCCCCCCCCHHH
Confidence            589999999999999999999999999999999999999  999888   7889888887643   47888999999999


Q ss_pred             HHHH----hCCHHHHHHHHHhhhhhhhhhhH--hhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCC
Q 027562           79 VAAK----FGHSDIVRVLVERAKLLQHENEE--LESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  152 (222)
Q Consensus        79 ~a~~----~~~~~~~~~Ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  152 (222)
                      +|+.    .|+.+++++|++.+..+..+...  ...........++..+..|.||||.|+.      +++|++.+   .+
T Consensus       207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~---~n  277 (327)
T 1sw6_A          207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANM---LN  277 (327)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHHT---TT
T ss_pred             HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhC---CC
Confidence            9999    89999999999987654332110  0001111134456688999999999985      89999884   45


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc
Q 027562          153 SANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS  202 (222)
Q Consensus       153 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  202 (222)
                      ..|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|++.|
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC--
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence            78999999999999999999999999999999999999999999998654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-34  Score=218.46  Aligned_cols=184  Identities=17%  Similarity=0.115  Sum_probs=151.3

Q ss_pred             HHHHHHcCCchhHHHHHHHHHHHHh-hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHh
Q 027562            5 LFKAAAAGNLEPFKDIAREVIKRLL-TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKF   83 (222)
Q Consensus         5 l~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~   83 (222)
                      +|.|+..+..++++.|++.|.+++. .+..|.||||+  |+..|+.+++++|++    .+..++..+..|+||||+|+..
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~--Aa~~g~~~~v~~Ll~----~Gad~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHW--LTSIANLELVKHLVK----HGSNRLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTBCCTTCCCHHHHHHHS
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHH--HHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHh
Confidence            4566666677788888888898888 89999999999  999999999999988    4677889999999999999999


Q ss_pred             CC---HHHHHHHHHhh-hhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHh----cCChHHHHHHHhc---------
Q 027562           84 GH---SDIVRVLVERA-KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVC----HQNVDVVEILTKE---------  146 (222)
Q Consensus        84 ~~---~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~----~~~~~~~~~Ll~~---------  146 (222)
                      |+   .++++.|++.+ ++++.                  .+..|.||||+|+.    .|+.+++++|++.         
T Consensus       175 g~~~~~~~~~~ll~~~~~~~~~------------------~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~  236 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPCLIL------------------EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQ  236 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGGGGE------------------ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGG
T ss_pred             cccccHHHHHHHHHhhhccccC------------------CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhccc
Confidence            98   68888888886 44443                  89999999999999    8999999999987         


Q ss_pred             -----------CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          147 -----------DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       147 -----------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                                 |.+ ++..+..|.||||.|+.      +++|+++  +++.++..|+||||+|+..|+.+++++|+++||
T Consensus       237 ~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Ga  307 (327)
T 1sw6_A          237 NRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGA  307 (327)
T ss_dssp             GCCEEEC-----------------CHHHHHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTC
T ss_pred             chHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence                       666 66889999999999985      8999988  588899999999999999999999999999999


Q ss_pred             cccccc
Q 027562          216 SILISF  221 (222)
Q Consensus       216 ~~~~~~  221 (222)
                      |+++.+
T Consensus       308 d~~~~d  313 (327)
T 1sw6_A          308 DPFIAN  313 (327)
T ss_dssp             CTTCCC
T ss_pred             CCcccC
Confidence            999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=4.5e-33  Score=191.05  Aligned_cols=155  Identities=25%  Similarity=0.291  Sum_probs=144.2

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .++|+.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+
T Consensus        15 ~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           15 GKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHL--AAFNGHLEIVEVLLK----NGADVNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCccCCCCCCHHHHHH
Confidence            368999999999999999999999998889999999999  999999999999987    35667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.||
T Consensus        89 ~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  149 (169)
T 2y1l_E           89 LFGHLEIVEVLLKNGADVNA------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTA  149 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            99999999999999988776                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcC
Q 027562          162 LYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g  181 (222)
                      +++|+..++.+++++|+++|
T Consensus       150 l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          150 FDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=3.1e-33  Score=191.52  Aligned_cols=160  Identities=17%  Similarity=0.130  Sum_probs=147.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.+.+++..+..|.||||+  |+..|+.+++++|++.    +..++..+..|.||||.|+
T Consensus         4 ~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~   77 (167)
T 3v31_A            4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMW--AAAHGQIAVVEFLLQN----GADPQLLGKGRESALSLAC   77 (167)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHT----TCCTTCCCTTCCCHHHHHH
T ss_pred             cchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHH--HHHCCCHHHHHHHHHc----CCCCCCcCCCCCcHHHHHH
Confidence            589999999999999999999998888889999999999  9999999999999873    5667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ ++..+..|.||
T Consensus        78 ~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~  138 (167)
T 3v31_A           78 SKGYTDIVKMLLDCGVDVNE------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNS  138 (167)
T ss_dssp             HHTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HcCCHHHHHHHHHCCCCCCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCH
Confidence            99999999999999988776                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcc
Q 027562          162 LYMAADYRSSDMVLALLENSTSASH  186 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~  186 (222)
                      +++|+..++.+++++|+++++++..
T Consensus       139 l~~A~~~~~~~~~~~L~~~~~~~~~  163 (167)
T 3v31_A          139 MDLAVALGYRSVQQVIESHLLKLLQ  163 (167)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            9999999999999999998765543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=1.3e-32  Score=185.85  Aligned_cols=151  Identities=19%  Similarity=0.209  Sum_probs=132.7

Q ss_pred             CCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH
Q 027562           34 KNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA  113 (222)
Q Consensus        34 g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  113 (222)
                      +.++|+.  |+..|+.++++++++...    .++ .+..|.||||.|+..|+.+++++|++.|++++.            
T Consensus         2 ~~~~L~~--A~~~g~~~~v~~Ll~~g~----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------   62 (153)
T 1awc_B            2 LGKKLLE--AARAGQDDEVRILMANGA----PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA------------   62 (153)
T ss_dssp             HHHHHHH--HHHHTCHHHHHHHHHHTC----CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC------------
T ss_pred             ccHHHHH--HHHcCCHHHHHHHHHcCC----CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------
Confidence            3467888  888888888888777422    222 477899999999999999999999999887766            


Q ss_pred             HHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCcc
Q 027562          114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKT  193 (222)
Q Consensus       114 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  193 (222)
                            .+..|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|+++|++++.++..|.|
T Consensus        63 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t  135 (153)
T 1awc_B           63 ------RTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKT  135 (153)
T ss_dssp             ------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             ------CCCCCCCHHHHHHHcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCC
Confidence                  788899999999999999999999999998 6688999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhHHHH
Q 027562          194 ALHAAAMKSYFGKFSYT  210 (222)
Q Consensus       194 ~l~~a~~~~~~~~~~~L  210 (222)
                      |+++|+..|+.+++++|
T Consensus       136 ~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          136 AFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999987

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=100.00  E-value=1.1e-32  Score=186.67  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=141.7

Q ss_pred             CCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH
Q 027562           34 KNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA  113 (222)
Q Consensus        34 g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  113 (222)
                      +.||||.  |+..|+.++++.+++.   .+..++..+..|.||||+ +..|+.+++++|++.|++++.            
T Consensus         2 ~~~~L~~--A~~~g~~~~v~~ll~~---~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~------------   63 (156)
T 1bd8_A            2 AGDRLSG--AAARGDVQEVRRLLHR---ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV------------   63 (156)
T ss_dssp             HHHHHHH--HHHHTCHHHHHHHHHT---TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC------------
T ss_pred             cchHHHH--HHHhCCHHHHHHHHHh---hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC------------
Confidence            4588999  9999999999888774   445678889999999999 999999999999999988776            


Q ss_pred             HHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCcc
Q 027562          114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKT  193 (222)
Q Consensus       114 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t  193 (222)
                            .+..|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|++. ++++.++..|.|
T Consensus        64 ------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t  135 (156)
T 1bd8_A           64 ------QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLT  135 (156)
T ss_dssp             ------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCC
T ss_pred             ------cCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCC
Confidence                  788999999999999999999999999998 668899999999999999999999999999 999999999999


Q ss_pred             HHHHHHHhccchhHHHHHhc
Q 027562          194 ALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       194 ~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      ||++|+..++.+++++|+++
T Consensus       136 ~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          136 PLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999975

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=7.1e-33  Score=193.91  Aligned_cols=155  Identities=18%  Similarity=0.111  Sum_probs=145.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+++++|++.+.+++..+..|.||||+  |+..|+.+++++|++.    +..++..+..|.||||+|+
T Consensus        36 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIW--AVKNNRLGIAEKLLSK----GSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHH--HHHcCCHHHHHHHHHC----CCCCCCCCCCCCcHHHHHH
Confidence            589999999999999999999999988888999999999  9999999999999884    4567888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ ++..|..|.||
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~  170 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVND------------------RNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTA  170 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBH
T ss_pred             HcCCHHHHHHHHHCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCH
Confidence            99999999999999988776                  789999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcC
Q 027562          162 LYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g  181 (222)
                      +++|+..++.+++++|+++|
T Consensus       171 l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          171 EASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999875

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=100.00  E-value=1.5e-32  Score=181.86  Aligned_cols=134  Identities=16%  Similarity=0.122  Sum_probs=126.9

Q ss_pred             CccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHH
Q 027562           63 PLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEI  142 (222)
Q Consensus        63 ~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  142 (222)
                      +..++..+..|.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+. ++.+++++
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~-~~~~~v~~   62 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA------------------LNRFGRRPIQVMMM-GSAQVAEL   62 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCTTTTTSTT-SCHHHHHH
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC------------------cCCCCCCHHHHHHc-CCHHHHHH
Confidence            346788899999999999999999999999999988776                  78899999999999 99999999


Q ss_pred             HHhcCCCCCCCCCCC-CCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          143 LTKEDPDYPYSANND-GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       143 Ll~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      |++.|++ ++..+.. |+||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|||
T Consensus        63 Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           63 LLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHTCC-SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHCCCC-CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            9999999 6688888 99999999999999999999999999999999999999999999999999999999996

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.98  E-value=2e-32  Score=200.31  Aligned_cols=177  Identities=21%  Similarity=0.182  Sum_probs=151.0

Q ss_pred             hcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccc----cCCChHHHHHH---HhCCHHHHHHHHHhhhhhhhhhh
Q 027562           32 KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVN----AKGETPLHVAA---KFGHSDIVRVLVERAKLLQHENE  104 (222)
Q Consensus        32 ~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~t~L~~a~---~~~~~~~~~~Ll~~~~~~~~~~~  104 (222)
                      ..|.++||.  |++.|+.+.++.+++++...+..++..+    ..|.||||+|+   ..|+.+++++|++.|++......
T Consensus         3 ~~~~~~L~~--A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~   80 (260)
T 3jxi_A            3 VFNRPILFD--IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE   80 (260)
T ss_dssp             CCCHHHHHH--HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred             cchHHHHHH--HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence            467899999  9999999999999887777666666555    67999999999   67999999999999976543111


Q ss_pred             HhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC--------------CCCCCHHHHHHHcCC
Q 027562          105 ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN--------------NDGKTPLYMAADYRS  170 (222)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--------------~~g~t~l~~a~~~~~  170 (222)
                             .....+...+..|.||||+|+..|+.+++++|++.|++ ++..+              ..|+||||+|+..++
T Consensus        81 -------~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~  152 (260)
T 3jxi_A           81 -------FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ  152 (260)
T ss_dssp             -------HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC
T ss_pred             -------hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCC
Confidence                   01112233556899999999999999999999999998 55666              689999999999999


Q ss_pred             HHHHHHHHh---cCCCCccCCCCCccHHHHHHHhcc---------chhHHHHHhcCCccc
Q 027562          171 SDMVLALLE---NSTSASHEGPNGKTALHAAAMKSY---------FGKFSYTLSVGISIL  218 (222)
Q Consensus       171 ~~~~~~Ll~---~g~~~~~~~~~g~t~l~~a~~~~~---------~~~~~~Ll~~ga~~~  218 (222)
                      .+++++|++   +|++++.+|..|+||||+|+..++         .+++++|+++|++++
T Consensus       153 ~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~  212 (260)
T 3jxi_A          153 PHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLF  212 (260)
T ss_dssp             HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccc
Confidence            999999999   999999999999999999998887         699999999999993

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.6e-32  Score=198.39  Aligned_cols=164  Identities=20%  Similarity=0.142  Sum_probs=120.8

Q ss_pred             hhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhh
Q 027562           31 AKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI  110 (222)
Q Consensus        31 ~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~  110 (222)
                      +..|.||||.  |+..+..+.++.+++...+    ++. +..|.||||.|+..|+.+++++|++.|++++.         
T Consensus         2 ~~~g~t~L~~--a~~~~~~~~~~~ll~~g~~----~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---------   65 (239)
T 1ycs_B            2 EITGQVSLPP--GKRTNLRKTGSERIAHGMR----VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL---------   65 (239)
T ss_dssp             ------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC---------
T ss_pred             CccccccCch--hhhhhhHHHHHHHhccCCC----ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC---------
Confidence            3579999999  9999999999998885433    333 36789999999999999999999999987776         


Q ss_pred             hhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCC
Q 027562          111 RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN  190 (222)
Q Consensus       111 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~  190 (222)
                               .+..|.||||+|+..|+.+++++|++.|++ .+..|..|+||||+|+..++.+++++|+++|++++..+..
T Consensus        66 ---------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~  135 (239)
T 1ycs_B           66 ---------PNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS  135 (239)
T ss_dssp             ---------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             ---------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCC
Confidence                     788999999999999999999999999999 6788999999999999999999999999999999999988


Q ss_pred             Cc-cHHHHH--HHhccchhHHHHHhcCCccccc
Q 027562          191 GK-TALHAA--AMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       191 g~-t~l~~a--~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      |. ||+|+|  +..|+.+++++|+++|+++++.
T Consensus       136 ~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~  168 (239)
T 1ycs_B          136 DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIM  168 (239)
T ss_dssp             SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTT
T ss_pred             CCcchHHHHHHhhhccHHHHHHHHHhhhccccc
Confidence            77 999999  7889999999999999998864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=4.1e-32  Score=183.30  Aligned_cols=150  Identities=26%  Similarity=0.265  Sum_probs=138.6

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      +++|+.|+..|+.+++++|++.|.+.+ .+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||.|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~   75 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHL--AAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHH--HHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH
Confidence            589999999999999999999988664 57789999999  999999999998886    45667888999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|++++.                  .+..|.||+|+|+..|+.+++++|++.|++ ++..+..|.||
T Consensus        76 ~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~  136 (153)
T 1awc_B           76 SEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             HcChHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCH
Confidence            99999999999999988776                  788999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 027562          162 LYMAADYRSSDMVLAL  177 (222)
Q Consensus       162 l~~a~~~~~~~~~~~L  177 (222)
                      +++|+..++.+++++|
T Consensus       137 l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.6e-32  Score=190.01  Aligned_cols=165  Identities=19%  Similarity=0.145  Sum_probs=151.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      .++|+.|+..|+.+++++|++. +.+.+..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   79 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHW--ACREGRSAVVEMLIM----RGARINVMNRGDDTPLHLA   79 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHH--HHHcCcHHHHHHHHH----cCCCCCCcCCCCCCHHHHH
Confidence            4789999999999999999997 55567888999999999  999999999999887    3567888899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.|
T Consensus        80 ~~~~~~~~v~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t  140 (179)
T 3f6q_A           80 ASHGHRDIVQKLLQYKADINA------------------VNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEM  140 (179)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCC
T ss_pred             HHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCC
Confidence            999999999999999998776                  789999999999999999999999999999 6788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCC
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNG  191 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  191 (222)
                      |+++|+..++.+++++|+++|++++..+..+
T Consensus       141 pl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          141 PVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             GGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            9999999999999999999999998876544

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.7e-35  Score=212.47  Aligned_cols=179  Identities=18%  Similarity=0.121  Sum_probs=134.0

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ||||.|+..|+.+++++|++.|.+++..+..|.||||+  |+..|+.+++++|++    .+..++..|..|+||||+|+.
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~--A~~~g~~~~v~~Ll~----~ga~~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN--AICGANYSIVDFLIT----AGANVNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHH
Confidence            57788888888888888888777777777778888888  777788777777776    355667777788888888888


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHH--HhcCChHHHHHHHhcCCCCCCCCCCCCC
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN-KEKNTALHEA--VCHQNVDVVEILTKEDPDYPYSANNDGK  159 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a--~~~~~~~~~~~Ll~~~~~~~~~~~~~g~  159 (222)
                      .|+.+++++|++.|++++.                  .+ ..|.||||+|  +..|+.+++++|++.|++ .+..+..+.
T Consensus        97 ~g~~~~v~~Ll~~ga~~~~------------------~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~  157 (229)
T 2vge_A           97 CNDTVICMALVQHGAAIFA------------------TTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAV  157 (229)
T ss_dssp             TTCHHHHHHHHTTTCCTTC------------------CCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEE
T ss_pred             cCCHHHHHHHHHcCCCccc------------------ccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCch
Confidence            8888888888887777665                  33 5778888887  777888888888887777 556677777


Q ss_pred             CHHHHHHHcCCHHHHHHHHhcCCC--CccCCCCCccHHHHHHHhccchhHHH
Q 027562          160 TPLYMAADYRSSDMVLALLENSTS--ASHEGPNGKTALHAAAMKSYFGKFSY  209 (222)
Q Consensus       160 t~l~~a~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~l~~a~~~~~~~~~~~  209 (222)
                      +|++.++...   ..++|++.|++  ++.+|..|+||||+|+..|+.++++.
T Consensus       158 ~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~  206 (229)
T 2vge_A          158 YALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPR  206 (229)
T ss_dssp             EESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEG
T ss_pred             HHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcceeeh
Confidence            7776544333   23566777777  56778888888888888888888765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.97  E-value=2.8e-31  Score=179.80  Aligned_cols=135  Identities=18%  Similarity=0.082  Sum_probs=115.5

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           67 LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        67 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      ...+..|.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+ .|+.+++++|++.
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~-~~~~~~v~~Ll~~   66 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA------------------PNSYGRRPIQVMM-MGSARVAELLLLH   66 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC------------------CCSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC------------------CCCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence            44577899999999999999999999999888776                  7889999999985 8999999999999


Q ss_pred             CCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          147 DPDYPYSANNDGKT-PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       147 ~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |++ .+..+..|+| |||+|+..++.+++++|+++|++++.++..|+||||+|+..++.+++++|+++|++++..+
T Consensus        67 g~~-~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B           67 GAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             TCC-CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------
T ss_pred             CCC-CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccC
Confidence            988 6688899998 9999999999999999999999999999999999999999999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=8e-32  Score=184.09  Aligned_cols=155  Identities=25%  Similarity=0.378  Sum_probs=139.3

Q ss_pred             ChHHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      +|+|+.|+..|+.+++++|++. +.+.+..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|
T Consensus         9 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHF--AAGYNRVSVVEYLLQ----HGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             hHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHH--HHHcChHHHHHHHHh----cCCCCCccCCCCCCHHHHH
Confidence            4799999999999999999984 44445677789999999  999999999999987    4567888999999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|+++|++++.                  .+..|.||||+|+..|+.+++++|++.|++ ++..|..|.|
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t  143 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNV------------------ADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNT  143 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             HHcCcHHHHHHHHhCCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCC
Confidence            999999999999999988776                  788999999999999999999999999999 6788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCC
Q 027562          161 PLYMAADYRSSDMVLALLENST  182 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~  182 (222)
                      |+++|.. ++.+++++|+++|+
T Consensus       144 ~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          144 PLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TGGGSCT-TCHHHHHHHHTC--
T ss_pred             hhHhHhc-CChHHHHHHhhccc
Confidence            9999776 89999999999886

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=4.3e-30  Score=167.60  Aligned_cols=126  Identities=32%  Similarity=0.489  Sum_probs=120.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCC
Q 027562           72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  151 (222)
Q Consensus        72 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  151 (222)
                      +|+||||.|+..|+.+++++|+++|.+++.                  .+..|.||||+|+..++.+++++|++.|++ +
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~   61 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V   61 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-T
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-C
Confidence            489999999999999999999999988766                  788999999999999999999999999998 6


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          152 YSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       152 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      +..+..|.||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.+++++|+++|||
T Consensus        62 ~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             cccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            68889999999999999999999999999999999999999999999999999999999999996

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=2e-30  Score=191.25  Aligned_cols=169  Identities=17%  Similarity=0.166  Sum_probs=152.4

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhh-hhhhhhhHhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAK-LLQHENEELES  108 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~-~~~~~~~~~~~  108 (222)
                      .+....+++|.  ++..+..+.++.++..+..  ..++..|..|.||||+|+..|+.+++++|++.|+ +++.       
T Consensus        72 ~~~~~~~~l~~--a~~~~~~~~~~~l~~~~~~--~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-------  140 (276)
T 4hbd_A           72 LRLACRSDAHP--ELVRRHLVTFRAMSARLLD--YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-------  140 (276)
T ss_dssp             HHHHHSTTCCH--HHHHHHHHHHHHHCHHHHH--HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTC-------
T ss_pred             HHHHhccCCCH--HHHHHHHHHHHHHHHHHHh--hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCC-------
Confidence            34567889999  8889999888888776443  2367889999999999999999999999999997 6665       


Q ss_pred             hhhhHHHHhhhccccCchHhHHHH-----hcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          109 GIRTARHMIRMTNKEKNTALHEAV-----CHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                                 .+..|.||+|+|+     ..++.+++++|++.|.. +...+..|+||||+|+..++.+++++|+++|++
T Consensus       141 -----------~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad  208 (276)
T 4hbd_A          141 -----------QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALMLAVSHGRVDVVKALLACEAD  208 (276)
T ss_dssp             -----------CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             -----------CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence                       7899999999999     66889999999999987 667788999999999999999999999999999


Q ss_pred             CccCCCCCccHHHHHHHhccchhHHHHHh-cCCcccccc
Q 027562          184 ASHEGPNGKTALHAAAMKSYFGKFSYTLS-VGISILISF  221 (222)
Q Consensus       184 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~  221 (222)
                      ++.+|..|+||||+|+..|+.+++++|++ +|+++++.+
T Consensus       209 ~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  247 (276)
T 4hbd_A          209 VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD  247 (276)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC
T ss_pred             CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC
Confidence            99999999999999999999999999999 999999875

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=5.7e-33  Score=200.80  Aligned_cols=187  Identities=14%  Similarity=0.032  Sum_probs=134.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||.|+..|+.+.++.|++.|.+++.. ..|.||||.  |+..|+.++++.|++    .+..++..|..|.||||+|+
T Consensus         6 ~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            6 QVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLD--SSLEGEFDLVQRIIY----EVDDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             --------------------------------CHHHHHH--HHHHTCHHHHHHHTS----TTSSCCCCCTTSCCHHHHHH
T ss_pred             cccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHH--HHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHH
Confidence            48999999999999999999999998765 589999999  999999999988876    45578889999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCC-C
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK-T  160 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~-t  160 (222)
                      ..|+.+++++|+++|++++.                  .|..|.||||+|+..|+.+++++|++.|++ .+..+..|. |
T Consensus        79 ~~g~~~~v~~Ll~~ga~~~~------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t  139 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGVNVNA------------------ADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQT  139 (239)
T ss_dssp             HHTCHHHHHHHHHHTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCC
T ss_pred             HcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcc
Confidence            99999999999999998776                  789999999999999999999999999999 556666665 9


Q ss_pred             HHHHH--HHcCCHHHHHHHHhcCCCCccC---------CCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          161 PLYMA--ADYRSSDMVLALLENSTSASHE---------GPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       161 ~l~~a--~~~~~~~~~~~Ll~~g~~~~~~---------~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      |+|+|  +..++.+++++|+++|++++..         +..+.++.+++...|.  +++.|.+.+.+
T Consensus       140 ~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~  204 (239)
T 1ycs_B          140 AADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDED  204 (239)
T ss_dssp             HHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTS
T ss_pred             hHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCC
Confidence            99999  7889999999999999988765         5567888888877765  45555555544

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.2e-30  Score=174.52  Aligned_cols=152  Identities=24%  Similarity=0.249  Sum_probs=137.1

Q ss_pred             ChHHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      +|+|+.|+..|+.+.+++|++. +.+++..+..|.||||+  + ..|+.+++++|++    .+..++..+..|.||||.|
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~--~-~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A   75 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--M-MFGSTAIALELLK----QGASPNVQDTSGTSPVHDA   75 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--S-CTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH--H-HcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHH
Confidence            4899999999999999999998 22677888899999999  4 3588888888887    4667888999999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++. ++ .+..|..|.|
T Consensus        76 ~~~~~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t  135 (156)
T 1bd8_A           76 ARTGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLT  135 (156)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCC
T ss_pred             HHcCcHHHHHHHHHcCCCCCC------------------cCCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCC
Confidence            999999999999999988776                  788999999999999999999999998 76 6688999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhc
Q 027562          161 PLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~  180 (222)
                      |||+|+..++.+++++|+++
T Consensus       136 ~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          136 PLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHHcCcHHHHHHHHhh
Confidence            99999999999999999874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=9.4e-30  Score=168.36  Aligned_cols=127  Identities=23%  Similarity=0.235  Sum_probs=118.7

Q ss_pred             cccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCC
Q 027562           69 VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDP  148 (222)
Q Consensus        69 ~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~  148 (222)
                      ....+.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   71 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNA------------------KDEYGLTPLYLATAHGHLEIVEVLLKNGA   71 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            455789999999999999999999999988776                  78899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcC
Q 027562          149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       149 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      + .+..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|+++|
T Consensus        72 ~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           72 D-VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             C-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             C-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            8 6688999999999999999999999999999999999999999999999999999999999987

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-32  Score=197.55  Aligned_cols=176  Identities=16%  Similarity=0.055  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHH---hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHH
Q 027562           17 FKDIAREVIKRL---LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLV   93 (222)
Q Consensus        17 v~~ll~~~~~~~---~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll   93 (222)
                      ++.|++.|.+++   ..+.+|.||||+  |+..|+.+++++|++.    +..++..|..|.||||+|+..|+.+++++|+
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~--A~~~g~~~~v~~Ll~~----g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll   74 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLD--AALTGELEVVQQAVKE----MNDPSQPNEEGITALHNAICGANYSIVDFLI   74 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHH--HHHHTCHHHHHHHHHH----SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHH--HHHcCCHHHHHHHHhc----CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456777777765   345567778888  8888888888888773    4456778888999999999999999999999


Q ss_pred             HhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHH--HHcCCH
Q 027562           94 ERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMA--ADYRSS  171 (222)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a--~~~~~~  171 (222)
                      +.|++++.                  .+..|.||||+|+..|+.+++++|++.|+++....+..|+||||+|  +..++.
T Consensus        75 ~~ga~~n~------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A           75 TAGANVNS------------------PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             HTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             HCCCCCCC------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChH
Confidence            88887766                  6788899999999999999999999888884433346888999998  888888


Q ss_pred             HHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          172 DMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       172 ~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      +++++|+++|++++..+..|.||++.++..   ...++|+++|+++++
T Consensus       137 ~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~---~~~~~ll~~ga~~~~  181 (229)
T 2vge_A          137 DCATYLADVEQSMGLMNSGAVYALWDYSAE---FGDELSFREGESVTV  181 (229)
T ss_dssp             HHHHHHHHHHHHTTTSGGGEEEESSCBCCS---STTBCCBCTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccCCchHHHHHHhhc---cccccCccccccccc
Confidence            999999999988888888888888765533   344678888888543

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=6.8e-31  Score=182.41  Aligned_cols=161  Identities=10%  Similarity=-0.018  Sum_probs=137.7

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccc-cCCChHHHHHHHhCCH----HHHHHHHHhhhhhhhhhhHhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVN-AKGETPLHVAAKFGHS----DIVRVLVERAKLLQHENEELE  107 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~t~L~~a~~~~~~----~~~~~Ll~~~~~~~~~~~~~~  107 (222)
                      .++++|+.  |++.|+.+.++.++.   ..   .+..+ ..|+||||+|+..|+.    +++++|++.|++++.      
T Consensus         5 ~~~~~l~~--Aa~~g~~~~~~~l~~---~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~------   70 (186)
T 3t8k_A            5 SEYRTVSA--AAMLGTYEDFLELFE---KG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS------   70 (186)
T ss_dssp             HHCSSHHH--HHHHSCHHHHHHHHH---HS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC------
T ss_pred             ccccHHHH--HHHcCCHHHHHHHHh---cC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC------
Confidence            46789999  899999877665554   22   23344 6799999999999875    489999999998887      


Q ss_pred             hhhhhHHHHhhhccccCchHhHHHHhcCC------hHHHHHHHhcCCCCCCCCCCCCC-CHHHHHHHcCC-----HHHHH
Q 027562          108 SGIRTARHMIRMTNKEKNTALHEAVCHQN------VDVVEILTKEDPDYPYSANNDGK-TPLYMAADYRS-----SDMVL  175 (222)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~g~-t~l~~a~~~~~-----~~~~~  175 (222)
                                  ++..|+||||+|+..+.      .+++++|++.|++ ++.+|..|+ ||||+|+..+.     .++++
T Consensus        71 ------------~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~  137 (186)
T 3t8k_A           71 ------------RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYK  137 (186)
T ss_dssp             ------------CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHH
T ss_pred             ------------CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHH
Confidence                        78999999999998876      5789999999999 778899999 99999998543     56999


Q ss_pred             HHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          176 ALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       176 ~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      +|++ +|++++.+|..|+||||+|+..++.+++++|+++..+.+++
T Consensus       138 ~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~  183 (186)
T 3t8k_A          138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK  183 (186)
T ss_dssp             HHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence            9999 99999999999999999999999999999999988776654

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.96  E-value=4.6e-31  Score=201.43  Aligned_cols=183  Identities=14%  Similarity=0.057  Sum_probs=146.1

Q ss_pred             HHHHHHH-cCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            4 NLFKAAA-AGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         4 ~l~~A~~-~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      +++.|.. .++.+.++++++.|.       ++.||||+  |+..|+.+++++|++.... ....+..+..|.||||.|+.
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~-------~~~T~Lh~--Aa~~G~~e~v~~Ll~~ga~-~~~~~~~~~~~~tpL~~Aa~  137 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGI-------KSEVICFV--AAITGCSSALDTLCLLLTS-DEIVKVIQAENYQAFRLAAE  137 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTC-------CHHHHHHH--HHHHCCHHHHHHHTTC--C-CSSCC--CHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCC-------CcCCHHHH--HHHcCCHHHHHHHHHcCCc-HHHHHHhccCCCCHHHHHHH
Confidence            4555555 477888888877655       34599999  9999999999999874331 11122345678899999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCC--CCCCCCC
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS--ANNDGKT  160 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~g~t  160 (222)
                      .|+.+++++|+++|++...               .+..+.. .||||+|+..|+.+++++|++.|++ .+.  .|..|.|
T Consensus       138 ~G~~eiv~~Ll~~gad~~~---------------~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~-~~~~~~d~~g~T  200 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIM---------------AMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT-EATAMIQAENYY  200 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHH---------------HHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccc---------------cccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc-cchhccCCCCCC
Confidence            9999999999999965321               0112223 8999999999999999999999988 334  6778999


Q ss_pred             HHHHHH-HcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccccc
Q 027562          161 PLYMAA-DYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILIS  220 (222)
Q Consensus       161 ~l~~a~-~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~  220 (222)
                      |||+|+ ..|+.+++++|++.|++       |.|||++|+..|+.+++++|+++|++++..
T Consensus       201 pL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~  254 (376)
T 2aja_A          201 AFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEM  254 (376)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccc
Confidence            999999 99999999999998753       899999999999999999999999988654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.6e-29  Score=174.43  Aligned_cols=160  Identities=11%  Similarity=0.089  Sum_probs=136.4

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccc----cHHHHHHHHHhCCccccccccCCChHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENA----STKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      ++|+.|++.|+.+.++.++..+.+. ..+..|.||||+  |+..++.+    ++++|++    .+.+++.++..|+||||
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~-~~~~~g~T~Lh~--A~~~~~~~~~~~iv~~Ll~----~Gadvn~~d~~g~TpLh   80 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED-KESVLKSNILYD--VLRNNNDEARYKISMFLIN----KGADIKSRTKEGTTLFF   80 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC-HHHHHTTTHHHH--HTTCSCHHHHHHHHHHHHH----TTCCSSCCCTTCCCTHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc-ccccCCCCHHHH--HHHcCCcchHHHHHHHHHH----CCCCCCCCCCCCCcHHH
Confidence            5799999999999999999876432 334789999999  88888654    5555554    67889999999999999


Q ss_pred             HHHHhCC------HHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCc-hHhHHHHhcC-----ChHHHHHHHh-
Q 027562           79 VAAKFGH------SDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKN-TALHEAVCHQ-----NVDVVEILTK-  145 (222)
Q Consensus        79 ~a~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~a~~~~-----~~~~~~~Ll~-  145 (222)
                      +|+..++      .+++++|+++|++++.                  +|..|. ||||+|+..+     ..+++++|++ 
T Consensus        81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~------------------~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~  142 (186)
T 3t8k_A           81 PLFQGGGNDITGTTELCKIFLEKGADITA------------------LYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ  142 (186)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCCSSS------------------CBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS
T ss_pred             HHHHcCCcchhhHHHHHHHHHHCCCCCCc------------------cCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh
Confidence            9999987      5789999999999887                  789999 9999999854     3569999999 


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCC
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG  188 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  188 (222)
                      .|++ ++..|..|+||||+|+..++.+++++|.++..+.+.++
T Consensus       143 ~gad-~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          143 SGLQ-LLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             cCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            9999 77999999999999999999999999998766655544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2.5e-29  Score=170.13  Aligned_cols=144  Identities=13%  Similarity=0.150  Sum_probs=114.9

Q ss_pred             hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhh
Q 027562           29 LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELES  108 (222)
Q Consensus        29 ~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  108 (222)
                      ..+..|.||||+  |+..|+.+++++|++    .+..++..+..|+||||+|+ .|+.+++++|++.|++++.       
T Consensus         7 ~~~~~~~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-------   72 (156)
T 1bi7_B            7 SSMEPSADWLAT--AAARGRVEEVRALLE----AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-------   72 (156)
T ss_dssp             ---CCSTTHHHH--HHHHTCHHHHHHHHT----TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-------
T ss_pred             CCCccchHHHHH--HHHcCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-------
Confidence            467789999999  999999999999887    35678888999999999985 8999999999999988776       


Q ss_pred             hhhhHHHHhhhccccCch-HhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccC
Q 027562          109 GIRTARHMIRMTNKEKNT-ALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE  187 (222)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~-~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  187 (222)
                                 .+..|.| |||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|+++|++++.+
T Consensus        73 -----------~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           73 -----------ADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             -----------CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------
T ss_pred             -----------cCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc
Confidence                       7889999 99999999999999999999999 6788999999999999999999999999999999999


Q ss_pred             CCCCccHHHHH
Q 027562          188 GPNGKTALHAA  198 (222)
Q Consensus       188 ~~~g~t~l~~a  198 (222)
                      +..|.||.+-+
T Consensus       141 ~~~g~t~~~~~  151 (156)
T 1bi7_B          141 NHARIDAAEGP  151 (156)
T ss_dssp             -----------
T ss_pred             CcCcCcccccC
Confidence            99999998743

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=4.6e-29  Score=165.22  Aligned_cols=131  Identities=24%  Similarity=0.208  Sum_probs=117.8

Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcC
Q 027562           68 QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED  147 (222)
Q Consensus        68 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  147 (222)
                      ..|..|+||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.|
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV------------------KDHAGWTPLHEACNHGHLKVVELLLQHK   66 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            5688999999999999999999999999988766                  7889999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       148 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      ++ .+..|..|+||||+|+..++.+++++|+++|++++.+|..|.||+++|+..+..+++++|.+.+...
T Consensus        67 ~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s~  135 (137)
T 3c5r_A           67 AL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS  135 (137)
T ss_dssp             CC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-------
T ss_pred             Cc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccCC
Confidence            98 6688999999999999999999999999999999999999999999999999999999988877653

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.95  E-value=1.9e-30  Score=198.06  Aligned_cols=186  Identities=13%  Similarity=0.070  Sum_probs=142.0

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHH---HhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKR---LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      +||||.|+..|+.++|++|++.|...   ...+..|.||||+  |+..|+.+++++|++...+. ...+..+.. .||||
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~--Aa~~G~~eiv~~Ll~~gad~-~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL--AAENGHLHVLNRLCELAPTE-IMAMIQAEN-YHAFR  168 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH--HHHTTCHHHHHHHHHSCTTT-HHHHHSHHH-HHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHH--HHHcCCHHHHHHHHhCCCCc-cccccCCCC-CCHHH
Confidence            48999999999999999999988721   1234467789999  99999999999998842100 001222223 99999


Q ss_pred             HHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHH-hcCChHHHHHHHhcCCCCCCCCCCC
Q 027562           79 VAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV-CHQNVDVVEILTKEDPDYPYSANND  157 (222)
Q Consensus        79 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (222)
                      .|+..|+.+++++|+++|++++.                +..+..|.||||+|+ ..|+.+++++|++.|.+        
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~----------------~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------  224 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEAT----------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------  224 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHH----------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------
T ss_pred             HHHHCCCHHHHHHHHHcCCccch----------------hccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------
Confidence            99999999999999999987653                013566889999999 99999999999986532        


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCc----------------------------------------------------
Q 027562          158 GKTPLYMAADYRSSDMVLALLENSTSAS----------------------------------------------------  185 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~----------------------------------------------------  185 (222)
                      |.||++.|+..|+.+++++|+++|++++                                                    
T Consensus       225 ~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~  304 (376)
T 2aja_A          225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP  304 (376)
T ss_dssp             HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred             cchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence            6788999988888888888887664321                                                    


Q ss_pred             ---------cCCCCCccHHHHHHHhccchhHHHHHhcCC
Q 027562          186 ---------HEGPNGKTALHAAAMKSYFGKFSYTLSVGI  215 (222)
Q Consensus       186 ---------~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga  215 (222)
                               .....+.|||++|+..|+.+++++|+++|.
T Consensus       305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~  343 (376)
T 2aja_A          305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS  343 (376)
T ss_dssp             TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHH
T ss_pred             hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChH
Confidence                     112345689999999999999999999874

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=2.1e-28  Score=174.92  Aligned_cols=136  Identities=23%  Similarity=0.171  Sum_probs=116.1

Q ss_pred             cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhc
Q 027562           67 LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKE  146 (222)
Q Consensus        67 ~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  146 (222)
                      +..+..|.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++.
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~  128 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------------------LDKAGSTALYWACHGGHKDIVEMLFTQ  128 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccc------------------cCCCCCCHHHHHHHcCCHHHHHHHHcC
Confidence            34567889999999999999999999999988776                  788999999999999999999999998


Q ss_pred             -CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          147 -DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       147 -~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                       |.+ .+..|..|+||||+|+..++.+++++|+++|++++.++..|.|||++|+..++.++++.|+++|++.++.+
T Consensus       129 ~g~~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          129 PNIE-LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             TTCC-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             CCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence             877 67889999999999999999999999999999999999999999999999999999999999999987653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=6.5e-29  Score=164.31  Aligned_cols=131  Identities=13%  Similarity=0.164  Sum_probs=119.1

Q ss_pred             HHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHh
Q 027562           27 RLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL  106 (222)
Q Consensus        27 ~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  106 (222)
                      .+..+..|.||||+  |+..|+.+++++|++.    +..++..+..|+||||+|+. |+.+++++|+++|++++.     
T Consensus         5 ~~~~~~~g~t~L~~--A~~~~~~~~v~~Ll~~----g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-----   72 (136)
T 1d9s_A            5 IHMLGGSSDAGLAT--AAARGQVETVRQLLEA----GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-----   72 (136)
T ss_dssp             CSCCCCCCSCHHHH--HHHTTCHHHHHHHHHT----TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-----
T ss_pred             ccCCCCCCccHHHH--HHHcCCHHHHHHHHHc----CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-----
Confidence            34567789999999  9999999999998873    56678889999999999999 999999999999988776     


Q ss_pred             hhhhhhHHHHhhhcccc-CchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          107 ESGIRTARHMIRMTNKE-KNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       107 ~~~~~~~~~~~~~~~~~-~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                                   .+.. |.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|+++|++
T Consensus        73 -------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           73 -------------ADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -------------CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                         7888 99999999999999999999999999 668899999999999999999999999999875

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.1e-26  Score=151.37  Aligned_cols=126  Identities=29%  Similarity=0.422  Sum_probs=114.9

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      +|.||||+  |+..|+.+++++|++.    +..++..+..|.||||.|+..++.+++++|++.|.+++.           
T Consensus         1 ~g~t~L~~--A~~~~~~~~v~~Ll~~----~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-----------   63 (126)
T 1n0r_A            1 NGRTPLHL--AARNGHLEVVKLLLEA----GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-----------   63 (126)
T ss_dssp             CCCCHHHH--HHHHTCHHHHHHHHHH----TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-----------
T ss_pred             CCccHHHH--HHHcCcHHHHHHHHHc----CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-----------
Confidence            48999999  9999999999998874    455677889999999999999999999999999988766           


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                             .+..|.||+|+|+..++.+++++|++.|++ .+..+..|.||+++|+..++.+++++|+++|++
T Consensus        64 -------~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           64 -------KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             -------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             -------cCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence                   788999999999999999999999999998 668899999999999999999999999999985

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.94  E-value=4.6e-27  Score=152.70  Aligned_cols=118  Identities=22%  Similarity=0.237  Sum_probs=106.2

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCC
Q 027562           70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  149 (222)
Q Consensus        70 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  149 (222)
                      +..|.||||.|+..|+.+++++|++.|.+++.                  .+..|.||||+|+..|+.+++++|++.|++
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   65 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR------------------TLEGGRKPLHYAADCGQLEILEFLLLKGAD   65 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS------------------CCTTSSCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc------------------cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            56789999999999999999999999988766                  788999999999999999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchh
Q 027562          150 YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGK  206 (222)
Q Consensus       150 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~  206 (222)
                       ++..|..|+||||+|+..++.+++++|+++|++++.++..|.||+++|...+..++
T Consensus        66 -~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           66 -INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             -TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             -CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence             66889999999999999999999999999999999999999999999965444333

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.3e-28  Score=178.36  Aligned_cols=163  Identities=18%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             HHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHH
Q 027562            8 AAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSD   87 (222)
Q Consensus         8 A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~   87 (222)
                      ++..|+.+.+..+...+.+   .+..|.||||+  |+..|+.++++.|++     +..++..|..|.||||+|+..|+.+
T Consensus        22 ~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~--A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~g~~~   91 (244)
T 3ui2_A           22 EWKDGHSPSWVPSSYIAAD---VVSEYETPWWT--AARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDK   91 (244)
T ss_dssp             EESSCCCCEEEEGGGSCHH---HHHHHHHHHHH--HHTTTCHHHHHHTTT-----TCCTTCBCTTSCBHHHHHHHHTCHH
T ss_pred             HHHcCCCcccccccccccc---cccCCCCHHHH--HHHcCCHHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHCCCHH
Confidence            3444555555444443333   33578888988  888888888877766     3457778888889999999888888


Q ss_pred             HHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHH
Q 027562           88 IVRVLVERAKLLQHENEELESGIRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA  166 (222)
Q Consensus        88 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~  166 (222)
                      ++++|+++|++++.                  .+ ..|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+
T Consensus        92 ~v~~Ll~~ga~~~~------------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A           92 CVRLLAEAGADLDH------------------RDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAR  152 (244)
T ss_dssp             HHHHHHHTTCCTTC------------------CCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHcCCCCCc------------------CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            89999888888766                  45 7788899999888888999999888888 6678888889998887


Q ss_pred             HcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          167 DYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       167 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      ..+.                 ...+.|||++|+..|+.+++++|++++.+
T Consensus       153 ~~~~-----------------~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          153 EILK-----------------TTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHT-----------------TCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHh-----------------ccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            5221                 24578899999999999999999998665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.3e-26  Score=153.19  Aligned_cols=127  Identities=20%  Similarity=0.241  Sum_probs=114.3

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      ....+.||||+  |+..|+.+++++|++    .+..++..|..|.||||+|+..|+.+++++|++.|++++.        
T Consensus        10 ~~~~~~t~l~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--------   75 (136)
T 2jab_A           10 HGSDLGKKLLE--AARAGQDDEVRILMA----NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA--------   75 (136)
T ss_dssp             --CHHHHHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred             ccccccHHHHH--HHHhCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--------
Confidence            45678899999  999999999999887    3566788899999999999999999999999999988776        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  181 (222)
                                .+..|.||||+|+..|+.+++++|++.|++ .+..|..|+||||+|+..++.+++++|+++|
T Consensus        76 ----------~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           76 ----------VDAIGFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             ----------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             ----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                      788999999999999999999999999998 6688999999999999999999999999876

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=5.4e-27  Score=162.74  Aligned_cols=129  Identities=25%  Similarity=0.217  Sum_probs=114.1

Q ss_pred             ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCC
Q 027562           70 NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD  149 (222)
Q Consensus        70 ~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~  149 (222)
                      +..|.||||.|+..|+.++++.|++ |.+++.                  .+..|.||||+|+..|+.+++++|++.|++
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  101 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA------------------VDENGRTALLFVAGLGSDKCVRLLAEAGAD  101 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            5578999999999999999999999 777665                  788999999999999999999999999999


Q ss_pred             CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          150 YPYSAN-NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       150 ~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                       .+..+ ..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+..+.++..+++..
T Consensus       102 -~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~  170 (183)
T 3deo_A          102 -LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG  170 (183)
T ss_dssp             -TTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHH
T ss_pred             -CCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcC
Confidence             44555 889999999999999999999999999999999999999999998877777666666665543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.8e-26  Score=160.04  Aligned_cols=141  Identities=20%  Similarity=0.174  Sum_probs=125.7

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      .+..|.||||+  |+..|+.++++.+++     +..++..|..|.||||+|+..|+.+++++|+++|++++.        
T Consensus        40 ~~~~g~t~L~~--A~~~g~~~~v~~Ll~-----~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~--------  104 (183)
T 3deo_A           40 VVSEYETPWWT--AARKADEQALSQLLE-----DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH--------  104 (183)
T ss_dssp             HHHHHHHHHHH--HHHTTCHHHHHHHTT-----TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC--------
T ss_pred             CCCCCCCHHHH--HHHcCCHHHHHHHHh-----cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc--------
Confidence            45689999999  999999998888876     456788999999999999999999999999999998876        


Q ss_pred             hhhHHHHhhhcc-ccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCC
Q 027562          110 IRTARHMIRMTN-KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG  188 (222)
Q Consensus       110 ~~~~~~~~~~~~-~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~  188 (222)
                                .+ ..|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.                 
T Consensus       105 ----------~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~-----------------  156 (183)
T 3deo_A          105 ----------RDMRGGLTALHMAAGYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKT-----------------  156 (183)
T ss_dssp             ----------CCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHT-----------------
T ss_pred             ----------CCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccC-----------------
Confidence                      55 8899999999999999999999999999 668899999999999874321                 


Q ss_pred             CCCccHHHHHHHhccchhHHHHHhc
Q 027562          189 PNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       189 ~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      ..+.+|+++|+..|+.+++++|.++
T Consensus       157 ~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 TPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccHHHHHHHcCHHHHHHHHHHh
Confidence            3568899999999999999999876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=1.5e-25  Score=138.28  Aligned_cols=93  Identities=29%  Similarity=0.410  Sum_probs=88.6

Q ss_pred             cCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhc
Q 027562          123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKS  202 (222)
Q Consensus       123 ~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~  202 (222)
                      .|.||||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            478999999999999999999999999 6788999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHhcCCc
Q 027562          203 YFGKFSYTLSVGIS  216 (222)
Q Consensus       203 ~~~~~~~Ll~~ga~  216 (222)
                      +.+++++|+++||+
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999986

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=1e-26  Score=153.92  Aligned_cols=134  Identities=25%  Similarity=0.333  Sum_probs=114.6

Q ss_pred             HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhh
Q 027562           24 VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHEN  103 (222)
Q Consensus        24 ~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~  103 (222)
                      |.|+ ..+..|.||||+  |+..|+.+++++|++    .+..++..+..|.||||+|+..|+.+++++|+++|++++.  
T Consensus         1 G~d~-~~~~~g~t~L~~--A~~~~~~~~~~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~--   71 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHI--ASIKGDIPSVEYLLQ----NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT--   71 (137)
T ss_dssp             ---C-CCCTTCCCHHHH--HHHHTCHHHHHHHHH----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC--
T ss_pred             CCCC-CcCCCCCCHHHH--HHHcCCHHHHHHHHH----cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC--
Confidence            4555 678899999999  999999999999887    4566788899999999999999999999999999988776  


Q ss_pred             hHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          104 EELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                                      .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.||+++|+..+..+++++|.+.+.+
T Consensus        72 ----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           72 ----------------TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             ----------------CCGGGCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             ----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence                            788999999999999999999999999999 678899999999999988888888877765543

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.92  E-value=7.5e-25  Score=161.35  Aligned_cols=133  Identities=17%  Similarity=0.060  Sum_probs=119.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhc---CChHHHHHHHhcCCC
Q 027562           73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH---QNVDVVEILTKEDPD  149 (222)
Q Consensus        73 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~  149 (222)
                      ..++|+.|+..|+.+.++.+++.|.+++..            ..++..+..|.||||+|+..   |+.+++++|++.|++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~------------~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~  197 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEK------------IPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN  197 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSB------------CCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhh------------ccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC
Confidence            356899999999999999999998875431            00223578899999999998   899999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          150 YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       150 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                       ++..|..|+||||+|+..++.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++..
T Consensus       198 -in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          198 -LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             -TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             -ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence             67889999999999999999999999999999999999999999999999999999999999999754

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.3e-24  Score=161.85  Aligned_cols=135  Identities=18%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhc---CChHHHHHHHhcCC
Q 027562           72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH---QNVDVVEILTKEDP  148 (222)
Q Consensus        72 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~  148 (222)
                      ...++|+.|+..|+.+.++.|++.|++++....            ....+..|.||||+|+..   ++.+++++|++.|+
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~------------~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga  217 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLP------------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG  217 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEE------------CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCC------------CcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC
Confidence            345789999999999999999999987664100            001377899999999987   89999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccc
Q 027562          149 DYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI  219 (222)
Q Consensus       149 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~  219 (222)
                      + ++..|..|+||||+|+..++.+++++|+++|++++.+|..|.|||++|+..++.+++++|+++|++...
T Consensus       218 d-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g~  287 (301)
T 2b0o_E          218 H-LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFA  287 (301)
T ss_dssp             C-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTTS
T ss_pred             C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            9 668899999999999999999999999999999999999999999999999999999999999998643

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=2.8e-26  Score=166.10  Aligned_cols=152  Identities=22%  Similarity=0.170  Sum_probs=124.4

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      .+.+++.+  ++..|+.+.+..+...       ....+..|.||||.|++.|+.++++.|++ |.+++.           
T Consensus        14 ~~~~~~l~--~~~~g~~~~~~~~~~~-------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-----------   72 (244)
T 3ui2_A           14 EGAMEYLI--EWKDGHSPSWVPSSYI-------AADVVSEYETPWWTAARKADEQALSQLLE-DRDVDA-----------   72 (244)
T ss_dssp             TTEEEEEE--EESSCCCCEEEEGGGS-------CHHHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC-----------
T ss_pred             CCccHHHH--HHHcCCCccccccccc-------ccccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC-----------
Confidence            45556666  6677776655333221       12234578999999999999999999999 877666           


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCC
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSAN-NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG  191 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g  191 (222)
                             .+..|.||||+|+..|+.+++++|++.|++ ++..+ ..|+||||+|+..++.+++++|+++|++++.++..|
T Consensus        73 -------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  144 (244)
T 3ui2_A           73 -------VDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERG  144 (244)
T ss_dssp             -------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             -------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence                   789999999999999999999999999999 44555 889999999999999999999999999999999999


Q ss_pred             ccHHHHHHHhccchhHHHHHhc
Q 027562          192 KTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       192 ~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      .||||+|+..+........+..
T Consensus       145 ~t~l~~A~~~~~~~~~~~~l~~  166 (244)
T 3ui2_A          145 LTALELAREILKTTPKGNPMQF  166 (244)
T ss_dssp             CCHHHHHHHHHTTCCCSSHHHH
T ss_pred             CcHHHHHHHHHhccCCCCHHHH
Confidence            9999999987665544444443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=2.8e-25  Score=165.39  Aligned_cols=139  Identities=20%  Similarity=0.107  Sum_probs=117.2

Q ss_pred             CCchhHHhhhcccccccHHHHHHHHHhCCccccc------cccCCChHHHHHHHh---CCHHHHHHHHHhhhhhhhhhhH
Q 027562           35 NTILHVNIRSKESENASTKFVEEILEKCPLLLLQ------VNAKGETPLHVAAKF---GHSDIVRVLVERAKLLQHENEE  105 (222)
Q Consensus        35 ~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~  105 (222)
                      .++|+.  |+..|+.+.++.+++    .+..++.      .+..|.||||+|+..   |+.+++++|+++|++++.    
T Consensus       152 ~~~L~~--A~~~g~~~~v~~ll~----~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~----  221 (301)
T 2b0o_E          152 PQRLWT--AICNRDLLSVLEAFA----NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA----  221 (301)
T ss_dssp             HHHHHH--HHHTTCHHHHHHHHH----TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC----
T ss_pred             HHHHhh--hhhccCHHHHHHHHh----cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC----
Confidence            356999  999999888887765    3444554      588999999999997   899999999999998776    


Q ss_pred             hhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCc
Q 027562          106 LESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS  185 (222)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  185 (222)
                                    .|..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..++.+++++|+++|++  
T Consensus       222 --------------~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--  284 (301)
T 2b0o_E          222 --------------KAADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG--  284 (301)
T ss_dssp             --------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred             --------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--
Confidence                          789999999999999999999999999999 678999999999999999999999999999987  


Q ss_pred             cCCCCCccHHHHHHHhccc
Q 027562          186 HEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       186 ~~~~~g~t~l~~a~~~~~~  204 (222)
                          .|.||||+|+..|+.
T Consensus       285 ----~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          285 ----TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             ----TTSSCCC--------
T ss_pred             ----CCCChhHHHHhcCCc
Confidence                578999999988763

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=1.5e-24  Score=165.01  Aligned_cols=127  Identities=13%  Similarity=0.140  Sum_probs=116.8

Q ss_pred             cCCChHHHHHHHh-CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhcc--ccCchHhHHHHhcCChHHHHHHHhcC
Q 027562           71 AKGETPLHVAAKF-GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTN--KEKNTALHEAVCHQNVDVVEILTKED  147 (222)
Q Consensus        71 ~~~~t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~a~~~~~~~~~~~Ll~~~  147 (222)
                      ..+.|+||.|+.. |+.++++.|++.|++++.                  .+  ..|.||||+|+..|+.+++++|++.|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~------------------~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G  258 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW------------------VNGGQDNATPLIQATAANSLLACEFLLQNG  258 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC------------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc------------------cccccCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            3566899999999 999999999999998876                  45  78999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       148 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      ++ ++..|..|+||||+|+..++.+++++|+++|++++..|..|.||||+|+..++.+++++|+.+|..
T Consensus       259 ad-vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          259 AN-VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             CC-CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99 668899999999999999999999999999999999999999999999999999999999988754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.91  E-value=1.7e-25  Score=159.80  Aligned_cols=138  Identities=21%  Similarity=0.212  Sum_probs=112.7

Q ss_pred             hhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHh-hhhhhhhhhHhh
Q 027562           29 LTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVER-AKLLQHENEELE  107 (222)
Q Consensus        29 ~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~  107 (222)
                      ..+..|.||||+  |+..|+.++++.|++    .+..++..+..|.||||+|+..|+.+++++|++. |++++.      
T Consensus        68 ~~~~~g~t~L~~--A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~------  135 (222)
T 3ehr_A           68 EQAESIDNPLHE--AAKRGNLSWLRECLD----NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ------  135 (222)
T ss_dssp             HHEEEESCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC------
T ss_pred             cccccccccccc--ccccCcHHHHHHHHh----CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc------
Confidence            467789999999  999999999999887    4566888899999999999999999999999998 887766      


Q ss_pred             hhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccC
Q 027562          108 SGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE  187 (222)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  187 (222)
                                  .+..|.||||+|+..|+.+++++|++.|++ .+..|..|.|||++|+..+..++++.|++.|+.....
T Consensus       136 ------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~  202 (222)
T 3ehr_A          136 ------------QNKLGDTALHAAAWKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLS  202 (222)
T ss_dssp             ------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC------------
T ss_pred             ------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhccchhhhcc
Confidence                        789999999999999999999999999999 6788999999999999999999999999999988877


Q ss_pred             CCCC
Q 027562          188 GPNG  191 (222)
Q Consensus       188 ~~~g  191 (222)
                      +..+
T Consensus       203 ~~~~  206 (222)
T 3ehr_A          203 NAED  206 (222)
T ss_dssp             ----
T ss_pred             chhh
Confidence            6554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.91  E-value=9.7e-25  Score=139.99  Aligned_cols=102  Identities=24%  Similarity=0.290  Sum_probs=97.5

Q ss_pred             hccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHH
Q 027562          119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA  198 (222)
Q Consensus       119 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  198 (222)
                      .+|..|.||||+|+..|+.+++++|++.|++ .+..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            3788999999999999999999999999998 668899999999999999999999999999999999999999999999


Q ss_pred             HHhccchhHHHHHhcCCcccccc
Q 027562          199 AMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       199 ~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +..++.+++++|+++|++++..+
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCC
Confidence            99999999999999999999764

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=7.6e-24  Score=137.43  Aligned_cols=101  Identities=18%  Similarity=0.142  Sum_probs=93.5

Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                      .+..|.+|||+|+..|+.+++++|++.|.+ .+..+..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            356788999999999999999999999998 6688999999999999999999999999999999999999999999999


Q ss_pred             HhccchhHHHHHhcCCcccccc
Q 027562          200 MKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       200 ~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      ..++.+++++|+++|++++..+
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~~  103 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVKG  103 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999998765

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=2.2e-23  Score=128.53  Aligned_cols=93  Identities=33%  Similarity=0.531  Sum_probs=86.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCC
Q 027562           72 KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP  151 (222)
Q Consensus        72 ~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~  151 (222)
                      +|+||||+|+..|+.+++++|++.|++++.                  ++..|.||||+|+..|+.+++++|++.|++ +
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~   61 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA------------------KDKNGRTPLHLAARNGHLEVVKLLLEAGAD-V   61 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-T
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-C
Confidence            489999999999999999999999988776                  789999999999999999999999999999 6


Q ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          152 YSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       152 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                      +..|..|+||||+|+..++.+++++|+++|++
T Consensus        62 ~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           62 NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            68899999999999999999999999999975

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=6.3e-24  Score=136.19  Aligned_cols=109  Identities=26%  Similarity=0.345  Sum_probs=100.3

Q ss_pred             ccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcC
Q 027562           68 QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED  147 (222)
Q Consensus        68 ~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  147 (222)
                      .+|..|.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+..++.+++++|++.|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~------------------~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA------------------RSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC------------------CCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC------------------cCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            4688999999999999999999999999988766                  7889999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHH
Q 027562          148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL  195 (222)
Q Consensus       148 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  195 (222)
                      ++ .+..|..|+||||+|+..++.+++++|+++|++++.++..|.+|-
T Consensus        66 ~~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           66 AD-VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CC-TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CC-CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99 668899999999999999999999999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.90  E-value=2.3e-23  Score=158.50  Aligned_cols=162  Identities=15%  Similarity=0.103  Sum_probs=112.6

Q ss_pred             cCCCchhHHhhhcc-cccccHHHHHHHHHhCCccccccc--cCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           33 TKNTILHVNIRSKE-SENASTKFVEEILEKCPLLLLQVN--AKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        33 ~g~~~L~~~~a~~~-~~~~~~~~l~~~~~~~~~~~~~~~--~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      .+.|+||.  |+.. ++.++++.|++    .+.+++..+  ..|.||||+|+..|+.+++++|+++|++++.        
T Consensus       198 ~~~t~L~~--Aa~~~g~~~~v~~LL~----~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~--------  263 (368)
T 3jue_A          198 HPGALLFR--ASGHPPSLPTMADALA----HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ--------  263 (368)
T ss_dssp             CHHHHHHH--HTSSSCCHHHHHHHHH----TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--------
T ss_pred             CCCcHHHH--HHHccCCHHHHHHHHH----cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC--------
Confidence            34579999  9888 99999988876    455677777  8899999999999999999999999998776        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC---CCCcc
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS---TSASH  186 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g---~~~~~  186 (222)
                                .|..|.||||+|+..|+.+++++|++.|++ .+..|..|.||||+|+..++.+++++|++.+   ++...
T Consensus       264 ----------~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~  332 (368)
T 3jue_A          264 ----------ADSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ  332 (368)
T ss_dssp             ----------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------
T ss_pred             ----------CCCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccc
Confidence                      789999999999999999999999999999 6788999999999999999999999999866   34445


Q ss_pred             CCCCCccHHHHHHHhcc--chhHHHHHhcCCcccc
Q 027562          187 EGPNGKTALHAAAMKSY--FGKFSYTLSVGISILI  219 (222)
Q Consensus       187 ~~~~g~t~l~~a~~~~~--~~~~~~Ll~~ga~~~~  219 (222)
                      .+..+.|+++.+.....  .+-.+.|.+++.++++
T Consensus       333 ~~~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~t  367 (368)
T 3jue_A          333 GQAGDETYLDIFRDFSLMASDDPEKLSRRSHDLHT  367 (368)
T ss_dssp             -----------------------------------
T ss_pred             cCCCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcCc
Confidence            56678899888776543  3456778888887764

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.87  E-value=4.8e-22  Score=146.37  Aligned_cols=130  Identities=21%  Similarity=0.154  Sum_probs=111.3

Q ss_pred             CCchhHHhhhcccccccHHHHHHHHHhCCcc--ccccccCCChHHHHHHHh---CCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           35 NTILHVNIRSKESENASTKFVEEILEKCPLL--LLQVNAKGETPLHVAAKF---GHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        35 ~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      .++|+.  |+..++.+.+..++.........  ++..+..|.||||+|+..   |+.+++++|+++|++++.        
T Consensus       131 l~~l~~--a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~--------  200 (278)
T 1dcq_A          131 LHSLCE--AVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK--------  200 (278)
T ss_dssp             HHHHHH--HHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC--------
T ss_pred             hhhhhh--HhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc--------
Confidence            467888  88899988777666532211111  455588999999999999   899999999999998876        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCc
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS  185 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~  185 (222)
                                +|..|.||||+|+..|+.+++++|++.|++ ++..|..|.||||+|+..++.+++++|+++|++..
T Consensus       201 ----------~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          201 ----------QTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             ----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             ----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                      789999999999999999999999999999 77899999999999999999999999999988643

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=7.1e-21  Score=120.85  Aligned_cols=91  Identities=24%  Similarity=0.231  Sum_probs=84.9

Q ss_pred             hccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHH
Q 027562          119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAA  198 (222)
Q Consensus       119 ~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a  198 (222)
                      ..+..|.|+||+|+..|+.+++++|++.|++ .+..|..|+||||+|+..++.+++++|+++|++++.++..|+||||+|
T Consensus        19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           19 HMGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ---CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             ccCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            3678899999999999999999999999998 667899999999999999999999999999999999999999999999


Q ss_pred             HHhccchhHHHH
Q 027562          199 AMKSYFGKFSYT  210 (222)
Q Consensus       199 ~~~~~~~~~~~L  210 (222)
                      +..++.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.81  E-value=1.3e-19  Score=114.98  Aligned_cols=93  Identities=25%  Similarity=0.318  Sum_probs=83.2

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           66 LLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        66 ~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      ....+..|.||||.|+..|+.+++++|++.|++++.                  .+..|.||||+|+..|+.+++++|++
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~------------------~d~~g~tpLh~A~~~~~~~~v~~Ll~   78 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA------------------KDKNGSTPLHLAARNGHLEVVKLLLE   78 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc------------------cCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            445678999999999999999999999999988776                  78899999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLAL  177 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  177 (222)
                      .|++ .+..|..|+||||+|+..++.+++++|
T Consensus        79 ~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           79 AGAD-VXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cCCC-ccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            9999 668899999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	222
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.002
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	1e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-07
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	9e-07
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-06
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.002
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	1e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	5e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	7e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	9e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 6e-15
 Identities = 55/231 (23%), Positives = 89/231 (38%), Gaps = 38/231 (16%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTA--------KTKNTILHVNIRSKESENASTKFVE 56
           L  A+  G+L         ++K LL              T LH+  R        T+  +
Sbjct: 4   LHVASFMGHLP--------IVKNLLQRGASPNVSNVKVETPLHMAAR-----AGHTEVAK 50

Query: 57  EILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM 116
            +L+    +  +     +TPLH AA+ GH+++V++L+E             + +  A   
Sbjct: 51  YLLQNKAKVNAK-AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAARE 109

Query: 117 ---------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP 161
                               K+  T LH A  +  V V E+L + D   P +A  +G TP
Sbjct: 110 GHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH-PNAAGKNGLTP 168

Query: 162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS 212
           L++A  + + D+V  LL    S      NG T LH AA ++        L 
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 1e-14
 Identities = 40/143 (27%), Positives = 60/143 (41%), Gaps = 19/143 (13%)

Query: 75  TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH 134
           TPLHVA+  GH  IV+ L             L+ G         ++N +  T LH A   
Sbjct: 2   TPLHVASFMGHLPIVKNL-------------LQRGAS-----PNVSNVKVETPLHMAARA 43

Query: 135 QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA 194
            + +V + L +       +   D +TPL+ AA    ++MV  LLEN+ + +     G T 
Sbjct: 44  GHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP 102

Query: 195 LHAAAMKSYFGKFSYTLSVGISI 217
           LH AA + +       L    S 
Sbjct: 103 LHIAAREGHVETVLALLEKEASQ 125

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 4e-14
 Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 22/214 (10%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  A    NL+  K +          A    T LH+  +  + E          L +   
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEV------ARSLLQYGG 222

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM-------- 116
                + +G TPLH+AA+ GH+++V +L+ +       N+   + +              
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 117 -------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
                  +  T +   T LH A  + N+ +V+    +      +    G +PL+ AA   
Sbjct: 283 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVK-FLLQHQADVNAKTKLGYSPLHQAAQQG 341

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
            +D+V  LL+N  S +    +G T L  A    Y
Sbjct: 342 HTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY 375

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (154), Expect = 1e-12
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 51/203 (25%)

Query: 47  SENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL 106
           S       V+ +L++     +  N K ETPLH+AA+ GH+++ + L             L
Sbjct: 8   SFMGHLPIVKNLLQRGASPNVS-NVKVETPLHMAARAGHTEVAKYL-------------L 53

Query: 107 ESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD----------------- 149
           ++  +     +    K+  T LH A    + ++V++L + + +                 
Sbjct: 54  QNKAK-----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 108

Query: 150 ---------------YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTA 194
                                  G TPL++AA Y    +   LLE     +  G NG T 
Sbjct: 109 EGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTP 168

Query: 195 LHAAAMKSYFGKFSYTLSVGISI 217
           LH A   +        L  G S 
Sbjct: 169 LHVAVHHNNLDIVKLLLPRGGSP 191

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 8e-09
 Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 20/171 (11%)

Query: 47  SENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEEL 106
           ++    +  E +LE+           G TPLHVA    + DIV++L+ R           
Sbjct: 140 AKYGKVRVAELLLERDAHPNAA-GKNGLTPLHVAVHHNNLDIVKLLLPRGG--------- 189

Query: 107 ESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA 166
                              T LH A     V+V   L  +      + +  G TPL++AA
Sbjct: 190 ---------SPHSPAWNGYTPLHIAAKQNQVEVARSL-LQYGGSANAESVQGVTPLHLAA 239

Query: 167 DYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
               ++MV  LL    + +    +G T LH  A + +       +  G+ +
Sbjct: 240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 8e-08
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 18/75 (24%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
               G +PLH AA+ GH+DIV +L             L++G           + +  T L
Sbjct: 326 KTKLGYSPLHQAAQQGHTDIVTLL-------------LKNGAS-----PNEVSSDGTTPL 367

Query: 129 HEAVCHQNVDVVEIL 143
             A     + V ++L
Sbjct: 368 AIAKRLGYISVTDVL 382

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (167), Expect = 1e-14
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 20/131 (15%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERA--------------------KLLQHENEELESG 109
              G T L  AA+ GH +++++L++                           + E +   
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
           +      + +  +   T L  AV  +++ +V+ L +++       ++DGKT L +A + +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264

Query: 170 SSDMVLALLEN 180
              +   L + 
Sbjct: 265 LKKIAELLCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 32/170 (18%), Positives = 55/170 (32%), Gaps = 29/170 (17%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVE 94
           N +L   ++     N     V+++LE    +  Q    G TPLH A +    DIV +L+ 
Sbjct: 6   NHLLIKAVQ-----NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 95  RAKLLQHENEELESGIRTA---------------RHMIRMTNKEKNTALHEAVCHQNVDV 139
                    +   +    A                  +   +    TA  EA  +  V  
Sbjct: 61  HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 140 VEILTKEDPD---------YPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           ++ L K   +                 G T L  AA+    +++  LL+ 
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE 170

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 32/146 (21%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA  G++E        V+K LL     +     N+      +A     +  +E    
Sbjct: 152 LMDAAEKGHVE--------VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 65  LLLQ----VNAK---GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMI 117
           LLL     VN +   G+TPL +A +  H  +V+ L+E+  +                  I
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-----------------EI 246

Query: 118 RMTNKEKNTALHEAVCHQNVDVVEIL 143
             T+ +  TAL  AV  +   + E+L
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-08
 Identities = 26/92 (28%), Positives = 39/92 (42%)

Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
           E N  L +AV +++VD+V+ L +   +  +     G TPL+ A      D+V  LL +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

Query: 183 SASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
                  NG T    AA+          LS G
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 36/186 (19%), Positives = 57/186 (30%), Gaps = 46/186 (24%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           +  G T    AA +G    ++ L +R   +    +         +       K   TAL 
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT--------KEDQERLRKGGATALM 153

Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANN--------------------------------- 156
           +A    +V+V++IL  E      + +N                                 
Sbjct: 154 DAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN 213

Query: 157 ----DGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTL 211
                GKTPL +A + +   +V  LLE      +    +GKTAL  A             
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

Query: 212 SVGISI 217
             G S 
Sbjct: 274 KRGAST 279

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 32  KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRV 91
           +   T L + +     E      V+ +LE+  + +   ++ G+T L +A +     I  +
Sbjct: 217 ERGKTPLILAV-----EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAEL 271

Query: 92  LVER 95
           L +R
Sbjct: 272 LCKR 275

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 2e-05
 Identities = 28/141 (19%), Positives = 44/141 (31%), Gaps = 18/141 (12%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA 131
           +    L  A +    D+V+ L+E    +  +                   +   T LH A
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQE-----------------EEGGWTPLHNA 46

Query: 132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNG 191
           V     D+VE L       P     +G TP  +AA   S  ++   L      +     G
Sbjct: 47  VQMSREDIVE-LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYG 105

Query: 192 KTALHAAAMKSYFGKFSYTLS 212
            TA   AA+        +   
Sbjct: 106 FTAFMEAAVYGKVKALKFLYK 126

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (150), Expect = 3e-12
 Identities = 34/236 (14%), Positives = 72/236 (30%), Gaps = 38/236 (16%)

Query: 22  REVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAK----GETPL 77
           +E+   L    +       +   ++   +    ++E+ +  P   L +N      G TPL
Sbjct: 52  QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL 111

Query: 78  HVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA-------------------RHMIR 118
           H      + ++V+ LV+      + +   ES +  A                      + 
Sbjct: 112 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 171

Query: 119 MTNKEKNTALHEAVCHQNVD------------VVEILTKEDPDYPYSANNDGKTPLYMAA 166
           + +    T LH  +    +             ++  + K+      S  N+ ++      
Sbjct: 172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231

Query: 167 DYRSSDMVLALLEN---STSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILI 219
             R   ++  L      +   + +  NG T L+ AA           L  G    I
Sbjct: 232 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI 287

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.4 bits (137), Expect = 2e-10
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 21/203 (10%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLL------TAKTKNTILHVNIRSKESENASTKFVEEI 58
           L    +  NLE        ++K L+                +    K   N  +   E +
Sbjct: 111 LHWLTSIANLE--------LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL 162

Query: 59  LEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIR 118
           L+     L+  ++   T LH               +      + +  +   ++     I+
Sbjct: 163 LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAK-----YYLDILMGWIVKKQNRPIQ 217

Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKED--PDYPYSANNDGKTPLYMAADYRSSDMVLA 176
               EK +  ++    +   ++E L  +    +   + +++G T L +AA   +  +V A
Sbjct: 218 SGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 277

Query: 177 LLENSTSASHEGPNGKTALHAAA 199
           LL+          +G   +   A
Sbjct: 278 LLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 1/108 (0%)

Query: 97  KLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNV-DVVEILTKEDPDYPYSAN 155
           +LL  E +E+ + +              N           + +V +       +     +
Sbjct: 45  RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVD 104

Query: 156 NDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
             G TPL+      + ++V  L+++ ++  +    G++ L  A     
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 152

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
            VN  G TPLH AA     +I  +L             LE G           +  + TA
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVML-------------LEGGAN-----PDAKDHYEATA 139

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE 187
           +H A    N+ ++ IL           + +G TPL++A D    +    L+    S   E
Sbjct: 140 MHRAAAKGNLKMIHILLY-YKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 198

Query: 188 GPNGKTALHAAA 199
               KT L  A 
Sbjct: 199 NKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 36/178 (20%), Positives = 69/178 (38%), Gaps = 16/178 (8%)

Query: 55  VEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTAR 114
           ++E +     L  + +    T LH A   GH++IV  L++    +  +++   S +  A 
Sbjct: 19  LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA 78

Query: 115 HM---------------IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK 159
                            +   N+   T LH A      ++  +L +   + P + ++   
Sbjct: 79  SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEA 137

Query: 160 TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
           T ++ AA   +  M+  LL    S + +   G T LH A  +    +    +S G SI
Sbjct: 138 TAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASI 195

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 5e-05
 Identities = 26/159 (16%), Positives = 45/159 (28%), Gaps = 49/159 (30%)

Query: 77  LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV---- 132
           +   A  G  + ++  +   K                  +   T+++  TALH A     
Sbjct: 7   VCNLAYSGKLEELKESILADK-----------------SLATRTDQDSRTALHWACSAGH 49

Query: 133 ----------------------------CHQNVDVVEILTKEDPDYPYSANNDGKTPLYM 164
                                            D +            + N +G TPL+ 
Sbjct: 50  TEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHY 109

Query: 165 AADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
           AA     ++ + LLE   +   +     TA+H AA K  
Sbjct: 110 AASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 148

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVE 94
            N + +TPL VA   G   I++ +VE
Sbjct: 198 ENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 16/93 (17%), Positives = 32/93 (34%)

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
           N  +        ++ ++     D       + D +T L+ A     +++V  LL+     
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63

Query: 185 SHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI 217
           + +   G + LH AA           L  G  +
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV 96

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 57.1 bits (136), Expect = 2e-10
 Identities = 22/89 (24%), Positives = 36/89 (40%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
                   +  TALH A    N+ +V+ L  E        + DGKTP+ +AA     ++V
Sbjct: 178 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVV 237

Query: 175 LALLENSTSASHEGPNGKTALHAAAMKSY 203
           + L++   S         TA   A   ++
Sbjct: 238 MYLIQQGASVEAVDATDHTARQLAQANNH 266

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 7e-09
 Identities = 15/97 (15%), Positives = 40/97 (41%), Gaps = 18/97 (18%)

Query: 49  NASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELES 108
            ++   V+ ++ +      + +  G+TP+ +AA+ G  ++V  L             ++ 
Sbjct: 197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL-------------IQQ 243

Query: 109 GIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK 145
           G       +   +   +TA   A  + + ++V+I  +
Sbjct: 244 GAS-----VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 3e-08
 Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
                 +++  T +  A     ++VV  L ++      + +    T   +A      ++V
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIV 270

Query: 175 LALLE 179
                
Sbjct: 271 DIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 6e-06
 Identities = 16/107 (14%), Positives = 33/107 (30%), Gaps = 25/107 (23%)

Query: 74  ETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVC 133
           E+P+ +  +   S  +   + R  +                    +  +   T LH    
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNI------------------IDPRHNRTVLHWIAS 42

Query: 134 HQNVDVVEILTKEDPDYPYSA-------NNDGKTPLYMAADYRSSDM 173
           + + +  E L   +     +A       + D  TPL +A   R   +
Sbjct: 43  NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 89

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 14/80 (17%)

Query: 63  PLLLLQVNAK----GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIR 118
           P+    VN        T LH  A    ++    L+          E + +G       + 
Sbjct: 19  PITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA-----KECIAAGA-----DVN 68

Query: 119 MTNKEKNTALHEAVCHQNVD 138
             + ++NT L  AV  +   
Sbjct: 69  AMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 123 EKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST 182
           E    LH      +  + E +T+E  +         +T L+  A   S++    L+ +  
Sbjct: 1   ESPIKLHTEAAG-SYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 183 SAS--------HEGPNGKTALH 196
                          +  T L 
Sbjct: 58  KECIAAGADVNAMDCDENTPLM 79

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAK 97
           V+A   T   +A    H +IV +  +R +
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIF-DRCR 277

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 9/62 (14%), Positives = 22/62 (35%)

Query: 159 KTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL 218
           ++P+ +  +   S  +   +   +    +  + +T LH  A  S   K    +       
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 219 IS 220
           I+
Sbjct: 61  IA 62

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 53.6 bits (127), Expect = 3e-09
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 1/85 (1%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
                  K   TALH A      +V+++L +   D     + DG TPL+ AA +   +  
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 175 LALLENSTSASHEGPNGKTALHAAA 199
             L+EN          G+TA   A 
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVAD 273

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 50.5 bits (119), Expect = 3e-08
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 19/130 (14%)

Query: 38  LHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAK 97
           + +    KE E    +   + L    +  ++    G T LHVAA  G+++++++L++   
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-- 221

Query: 98  LLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND 157
                           R+ + + + +  T LH A      +   IL +   D   + N  
Sbjct: 222 ----------------RYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKV 264

Query: 158 GKTPLYMAAD 167
           G+T   +A +
Sbjct: 265 GQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.7 bits (91), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 1/80 (1%)

Query: 94  ERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS 153
              +L +    E +      +        +       A    + + V  L +   D    
Sbjct: 10  RNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGAD-INY 68

Query: 154 ANNDGKTPLYMAADYRSSDM 173
           AN DG T L+ A    + DM
Sbjct: 69  ANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.2 bits (87), Expect = 4e-04
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 24/118 (20%)

Query: 30  TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIV 89
            AK+  T LHV      +E      V ++L +    +   +  G TPLH AA +G  +  
Sbjct: 195 HAKSGGTALHVAAAKGYTE------VLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEAC 248

Query: 90  RVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED 147
           R+L             +E+        +   NK   TA   A       + E+  K++
Sbjct: 249 RIL-------------VENLCD-----MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 7e-09
 Identities = 25/133 (18%), Positives = 37/133 (27%), Gaps = 16/133 (12%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTAL 128
           V   G+T LH+A    H   +  L+                       + + N    TAL
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGF---------------SAGHEYLDLQNDLGQTAL 49

Query: 129 HEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEG 188
           H A        VE            A   G T L++A   R+      LL+   S   + 
Sbjct: 50  HLAAILGEASTVEK-LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

Query: 189 PNGKTALHAAAMK 201
            +           
Sbjct: 109 SDTYLTQSQDCTP 121

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 4e-07
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 2/98 (2%)

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
            ++ +TALH AV HQ+   ++ L       +Y    N+ G+T L++AA    +  V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 179 ENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS 216
                       G TALH A            L    S
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPS 103

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 1/81 (1%)

Query: 100 QHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGK 159
             + E +         + +       T LH AV  Q   V+E+L K   D P +    G+
Sbjct: 168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGR 226

Query: 160 TPLYMAADYRSSDMVLALLEN 180
           TPL  A    +  +   L  +
Sbjct: 227 TPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 7/27 (25%), Positives = 10/27 (37%)

Query: 69  VNAKGETPLHVAAKFGHSDIVRVLVER 95
               G TPL  A    +  + R+L   
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 38/199 (19%), Positives = 72/199 (36%), Gaps = 10/199 (5%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AA  G     + +       L+  +  +T LH+  R +            +L+  P 
Sbjct: 49  LHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHT-----CACVLLQPRP- 102

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
                           ++    D              ENEE        R  +   N + 
Sbjct: 103 ---SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-WRLQLEAENYDG 158

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSA 184
           +T LH AV H++ ++V +L     D        G+TPL++A + +++ ++  LL+     
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218

Query: 185 SHEGPNGKTALHAAAMKSY 203
           +     G+T L +A ++  
Sbjct: 219 TARMYGGRTPLGSALLRPN 237

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.8 bits (123), Expect = 1e-08
 Identities = 17/138 (12%), Positives = 39/138 (28%), Gaps = 18/138 (13%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA 127
            + A+      +AA+ GH  ++  L E A                   ++ M   E   A
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELA----------------PTEIMAMIQAENYHA 164

Query: 128 LHEAVCHQNVDVVEILTKE--DPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSAS 185
              A  + ++ V+  L +             +     + A      +++  LL+     +
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 186 HEGPNGKTALHAAAMKSY 203
           +   +             
Sbjct: 225 YAEIHEFEYGEKYVNPFI 242

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 49.5 bits (117), Expect = 7e-08
 Identities = 35/226 (15%), Positives = 58/226 (25%), Gaps = 31/226 (13%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSK-----ESENASTKFVEEIL 59
              AA  G+L         V+ RL        +  +   +       +EN     +  + 
Sbjct: 130 FRLAAENGHLH--------VLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC 181

Query: 60  EKCPLLLLQV--NAKGETPLHVAAKFGHSDIVRVLVER----AKLLQHENEELESGIRTA 113
           E  P     +            A   GH +++  L++     A    HE E  E  +   
Sbjct: 182 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 241

Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
                   KE + A   +      D+V                     L    D    D 
Sbjct: 242 IARHVNRLKEMHDAFKLSNPDGVFDLVT-------KSECLQGFYMLRNLIRRNDEVLLDD 294

Query: 174 VLALLE-----NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
           +  LL           +    +    L  A      G  +  LS+ 
Sbjct: 295 IRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 16/148 (10%), Positives = 41/148 (27%), Gaps = 10/148 (6%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALH 129
           N + +  L +       ++ +  +   +L        E+       +    N E+   + 
Sbjct: 9   NYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEA---IHIFLPGTKNMEQ---VR 62

Query: 130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAA---DYRSSDMVLALLENSTSASH 186
           + +C           K+     +      +   ++AA      + D +  LL +      
Sbjct: 63  QLLCLYYAHYNR-NAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV 121

Query: 187 EGPNGKTALHAAAMKSYFGKFSYTLSVG 214
                  A   AA   +    +    + 
Sbjct: 122 IQAENYQAFRLAAENGHLHVLNRLCELA 149

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-08
 Identities = 36/208 (17%), Positives = 69/208 (33%), Gaps = 29/208 (13%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRV 91
           ++ LH+ I      +       E++ +    L  +N +    +TPLH+A      +I   
Sbjct: 3   DSFLHLAII-----HEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

Query: 92  LVERAK---------------------LLQHENEELESGIRTARHMIRMTNKEKNTALHE 130
           L+                         L                 +++ TN   +T LH 
Sbjct: 58  LLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 117

Query: 131 AVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPN 190
           A  H  + +VE+L     D       +G+T L++A D ++ D+V  LL+     +     
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 177

Query: 191 GKTALHAAAMKSYFGKFSYTLSVGISIL 218
           G +       +           + +  L
Sbjct: 178 GYSPYQLTWGRPSTRIQQQLGQLTLENL 205

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 4e-06
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 1/78 (1%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
            +         TALH AV  QN D+V +L K   D        G +P  +     S+ + 
Sbjct: 136 DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-NRVTYQGYSPYQLTWGRPSTRIQ 194

Query: 175 LALLENSTSASHEGPNGK 192
             L + +       P  +
Sbjct: 195 QQLGQLTLENLQMLPESE 212

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 14/64 (21%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G++ LH+A       +   ++   ++                  +   N  + T LH AV
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIR--QVKGDLAF------------LNFQNNLQQTPLHLAV 47

Query: 133 CHQN 136
               
Sbjct: 48  ITNQ 51

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.2 bits (118), Expect = 3e-08
 Identities = 35/202 (17%), Positives = 67/202 (33%), Gaps = 50/202 (24%)

Query: 51  STKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGI 110
           + + + ++L +   L   ++  GET LH+AA+F  +D  + L++       ++    + +
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 111 RTA----------------RHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA 154
             A                   +     +  T L  A       +VE L   D D   +A
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAA 119

Query: 155 NNDGKTP---------------------------------LYMAADYRSSDMVLALLENS 181
           +N GKT                                  L++AA   S +   ALL+N 
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179

Query: 182 TSASHEGPNGKTALHAAAMKSY 203
            +        +     A+ + +
Sbjct: 180 ANREITDHMDRLPRDVASERLH 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.9 bits (99), Expect = 8e-06
 Identities = 19/127 (14%), Positives = 43/127 (33%), Gaps = 20/127 (15%)

Query: 53  KFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT 112
           + + E L      +   +  G+T LH AA   +++ V +                  +  
Sbjct: 103 EGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNI------------------LLM 144

Query: 113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSD 172
                   + +  T L  A    + +  + L     +     ++  + P  +A++    D
Sbjct: 145 HHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHD 203

Query: 173 MVLALLE 179
           +V  LL+
Sbjct: 204 IV-RLLD 209

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 8e-08
 Identities = 11/49 (22%), Positives = 22/49 (44%)

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDM 173
           N  LH+A        V+ L    P      + DG+ PL+ +  +++ ++
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEI 49

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.4 bits (103), Expect = 3e-06
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
             +R+ +K     LH A    ++ ++E+L           +  G TPL+ A      D  
Sbjct: 129 ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA 188

Query: 175 LALLENS-TSASHEGPNGKTALHAAAMK 201
           + L+E            G  A   A  +
Sbjct: 189 VLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
             +   +K+  T L  A+   + D   +L ++        +N G     +A +     + 
Sbjct: 163 SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVK 219

Query: 175 LALLEN 180
              L N
Sbjct: 220 KFFLNN 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 7e-06
 Identities = 30/162 (18%), Positives = 49/162 (30%), Gaps = 19/162 (11%)

Query: 35  NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVE 94
           N  LH               V+E+L   P LLLQ +  G  PLH +  F           
Sbjct: 1   NYPLHQACM-----ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQA--------- 46

Query: 95  RAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA 154
                +  +  L              +      +  +V +  V       +         
Sbjct: 47  ----HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY-DRPLKPDLNKI 101

Query: 155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALH 196
            N G T L++A   +  ++   L+EN  S   +    +  LH
Sbjct: 102 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLH 143

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 160 TPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
            PL+ A        V  LL    +    +  +G+  LH +         S+ LS  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.4 bits (108), Expect = 1e-07
 Identities = 17/121 (14%), Positives = 31/121 (25%), Gaps = 18/121 (14%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
            +     A K G  D V+  V + + +    E     +  A    ++   E        +
Sbjct: 2   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI 61

Query: 133 CHQNVDVVEIL--------------TKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
              +   +  L                           DG T L    +      + ALL
Sbjct: 62  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDN----QAIKALL 117

Query: 179 E 179
           +
Sbjct: 118 Q 118

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.2 bits (105), Expect = 6e-07
 Identities = 18/142 (12%), Positives = 41/142 (28%), Gaps = 13/142 (9%)

Query: 75  TPLHVAAKFGHSDIVRVLVER-------------AKLLQHENEELESGIRTARHMIRMTN 121
             L  AA+ G  D VR+L+                 L         + +     + R   
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 122 KEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENS 181
            + +         +    +  +  +      + +    T L+ A ++   ++V  L++  
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYG 123

Query: 182 TSASHEGPNGKTALHAAAMKSY 203
                +    KTA   +     
Sbjct: 124 ADVHTQSKFCKTAFDISIDNGN 145

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 8e-05
 Identities = 8/47 (17%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 49  NASTKFVEEILEKCPLLLLQVNAK---GETPLHVAAKFGHSDIVRVL 92
            A+    +E++E        V+ +    +T   ++   G+ D+  +L
Sbjct: 106 WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
           LH A  H + +VVE+L K   D  ++ +   KT   ++ D  + D+   +L+
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLA-EILQ 153

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (105), Expect = 9e-07
 Identities = 19/149 (12%), Positives = 43/149 (28%), Gaps = 16/149 (10%)

Query: 32  KTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRV 91
             K   L   +++++       + + +     + L   +   ET LH+A +      + +
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 92  LVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP 151
           +      L   +  L+         +       N    + +                   
Sbjct: 64  V----DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA------------SI 107

Query: 152 YSANNDGKTPLYMAADYRSSDMVLALLEN 180
             AN  G+TPL +A   +       L + 
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQA 136

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 3e-04
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 2/40 (5%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVE--RAKLLQHENEELE 107
           N  GETPL +A +  H     +L +    +   H + E E
Sbjct: 111 NESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHVEYE 150

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAV 132
           G+TPLH+A   G+   V  LV             + G       + + N  + T LH AV
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNL---------FQQGGRE-----LDIYNNLRQTPLHLAV 48

Query: 133 CHQN 136
               
Sbjct: 49  ITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 5e-06
 Identities = 15/94 (15%), Positives = 37/94 (39%), Gaps = 1/94 (1%)

Query: 110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYR 169
           +     +  +  K   + L  AV + ++ +V++L +   +        G + L+ A+   
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ-MYSGSSALHSASGRG 188

Query: 170 SSDMVLALLENSTSASHEGPNGKTALHAAAMKSY 203
              +V  L+ +   +S +  +  T L  A  +  
Sbjct: 189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
             +       ++ALH A     + +V  L +   D     N    TPL +A   R  D++
Sbjct: 168 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 9e-05
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 18/87 (20%)

Query: 54  FVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTA 113
            + ++L +    +      G + LH A+  G   +VR L             + SG    
Sbjct: 158 SMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL-------------VRSGAD-- 202

Query: 114 RHMIRMTNKEKNTALHEAVCHQNVDVV 140
                + N   +T L  A   + +D++
Sbjct: 203 ---SSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDY---PYSANNDGKTPLYMA 165
           +T LH AV   N+  V  L              NN  +TPL++A
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 4e-04
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVR 90
             N   +TPL VA      DI+R
Sbjct: 205 LKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 157 DGKTPLYMAADYRSSDMVLALLENSTSA----SHEGPNGKTALHAAAMKSYF 204
           DG TPL++A    +   V  L+                 +T LH A + +  
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 9e-06
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 68  QVNAKGETPLHVAAKFGHSDIVRVLVER 95
             N KG+T   +A  +G +++V ++   
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 115 HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV 174
             + + + E N  LH A    ++ VVE L K         N+ G T   +A  Y  +++V
Sbjct: 90  ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 149

Query: 175 LALLEN 180
             +  N
Sbjct: 150 SLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 21/154 (13%), Positives = 48/154 (31%), Gaps = 14/154 (9%)

Query: 75  TPLHVAAKFGHSDIVRVLVER--------------AKLLQHENEELESGIRTARHMIRMT 120
             L  AA  G  + +  L++                ++++  N E+   +        + 
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN 180
           ++     +H+A     +D ++ L +   D     N         A +     +   +   
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 181 STSASHEGPNGKTALHAAAMKSYFGKFSYTLSVG 214
           +++  H    G TA   A +       S   + G
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 1e-05
 Identities = 14/121 (11%), Positives = 32/121 (26%), Gaps = 14/121 (11%)

Query: 73  GETPLHVAAKFGHSDIVRVLVE--------------RAKLLQHENEELESGIRTARHMIR 118
               L  AA  G  + VR L+E                +++   +  +   +        
Sbjct: 3   SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPN 62

Query: 119 MTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALL 178
             +    T        +      ++           +  G+ P+ +A +    D+   L 
Sbjct: 63  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR 122

Query: 179 E 179
            
Sbjct: 123 A 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 5e-04
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 73  GETPLHVAAKFGHSDIVRVLVERA 96
           G  P+ +A + GH D+ R L   A
Sbjct: 102 GRLPVDLAEELGHRDVARYLRAAA 125

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 5e-05
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 70  NAKGETPLHVAAKFGHSDIVRVLVE 94
           +A+G TPL +A + G  D+V +L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 7e-04
 Identities = 23/175 (13%), Positives = 49/175 (28%), Gaps = 26/175 (14%)

Query: 5   LFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPL 64
           L  AAA G+++         ++RLL  +  +     +  ++  + A    +         
Sbjct: 6   LSGAAARGDVQ--------EVRRLLHRELVH----PDALNRFGKTALQVMMFGSTAIAL- 52

Query: 65  LLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEK 124
                       L       +              +    +    +      + + +   
Sbjct: 53  -----------ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTG 101

Query: 125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE 179
              +H AV   +  VV           +  +  G TPL +A    + D+V  L  
Sbjct: 102 ALPIHLAVQEGHTAVVSF--LAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 9e-04
 Identities = 20/146 (13%), Positives = 34/146 (23%), Gaps = 15/146 (10%)

Query: 72  KGETPLHVAAKFGHSDIVRVLVERAK--------------LLQHENEELESGIRTARHMI 117
           +    L  AA  G    VR L+ R                 +        +     +   
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGAS 60

Query: 118 RMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL 177
                   T+               +  E        +  G  P+++A     + +V  L
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 178 LENSTSASHEGPNGKTALHAAAMKSY 203
              S         G T L  A  +  
Sbjct: 121 AAES-DLHRRDARGLTPLELALQRGA 145

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.97
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.95
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.88

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-42  Score=250.26  Aligned_cols=209  Identities=19%  Similarity=0.195  Sum_probs=178.6

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHH---HhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKR---LLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      +||||.||..|+.+++++|++.|.++   +..+..|.||||+  |+..|+.+++++|++    .+..++..|..|.||||
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~--A~~~g~~~iv~~Ll~----~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHL--AAILGEASTVEKLYA----AGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCSSCCCTTSCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccch--HHhhccccccccccc----ccccccccccccchhhh
Confidence            59999999999999999999998774   3567889999999  999999999999887    46678889999999999


Q ss_pred             HHHHhCCHHHHHHHHHhhhhhhhhhhH-----------------------------hhhhhhhHHHHhhhccccCchHhH
Q 027562           79 VAAKFGHSDIVRVLVERAKLLQHENEE-----------------------------LESGIRTARHMIRMTNKEKNTALH  129 (222)
Q Consensus        79 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~l~  129 (222)
                      +|+..++.+++++|++.+.........                             ...........++.++..|.||||
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            999999999999998765432211000                             000001112334567889999999


Q ss_pred             HHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHH
Q 027562          130 EAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSY  209 (222)
Q Consensus       130 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~  209 (222)
                      +|+..++.+++++|++.+.+.....+..|.||||+|+..++.+++++|+++|++++.+|..|.||||+|+..++.+++++
T Consensus       164 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~  243 (255)
T d1oy3d_         164 VAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL  243 (255)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHH
T ss_pred             ccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHH
Confidence            99999999999999999998776778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCc
Q 027562          210 TLSVGIS  216 (222)
Q Consensus       210 Ll~~ga~  216 (222)
                      |+++||+
T Consensus       244 Ll~~Ga~  250 (255)
T d1oy3d_         244 LRAHGAP  250 (255)
T ss_dssp             HHHTTCC
T ss_pred             HHHcCCC
Confidence            9999996

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-38  Score=226.15  Aligned_cols=195  Identities=23%  Similarity=0.276  Sum_probs=175.2

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH-HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV-IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      |+.|+.+|..|+++.|+.+++.. ...+.+|..|+||||+  |+..|+.+++++++...    ......+..+.++++.+
T Consensus         4 ~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~--Aa~~g~~e~~~~l~~~~----~~~~~~~~~~~~~~~~~   77 (223)
T d1uoha_           4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHW--ACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIA   77 (223)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH--HHHHTCHHHHHHHHHHT----CCSCCCCTTCCCHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHH--HHHhhhhcccccccccc----ccccccccccccccccc
Confidence            67899999999999999998764 5566889999999999  99999999999887743    33445567789999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..++.+++++|++.|.+++.                  .+..|.||||+|+..|+.+++++|++.|.+ ++..+..|.|
T Consensus        78 ~~~~~~~i~~~Ll~~~~d~~~------------------~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t  138 (223)
T d1uoha_          78 ASAGRDEIVKALLGKGAQVNA------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEAT  138 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCC
T ss_pred             ccccccchhHHHhccCceeEe------------------eCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCc
Confidence            999999999999999887665                  788999999999999999999999999998 6688999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          161 PLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |||+|+..++.+++++|++.|.+++.++..|+||||.|+..|+.+++++|+++|||+++.+
T Consensus       139 ~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d  199 (223)
T d1uoha_         139 AMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIEN  199 (223)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             cchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999865

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=220.72  Aligned_cols=185  Identities=22%  Similarity=0.206  Sum_probs=171.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||+|+..|+.++++++++.+.+....+..+.++++.  ++..++.++++++++    .+..++..|..|.||||+|+
T Consensus        38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~Ll~----~~~d~~~~d~~g~tpL~~A~  111 (223)
T d1uoha_          38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHI--AASAGRDEIVKALLG----KGAQVNAVNQNGCTPLHYAA  111 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHhhhhcccccccccccccccccccccccccc--cccccccchhHHHhc----cCceeEeeCCCCCchhhHHH
Confidence            489999999999999999999888777777789999999  999999999988877    34567889999999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..|+.+++++|+++|.+++.                  .+..|.||+|+|+..+..+++++|.+.+.+ .+..|..|+||
T Consensus       112 ~~~~~e~~~~Ll~~g~d~~~------------------~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~-i~~~d~~g~Tp  172 (223)
T d1uoha_         112 SKNRHEIAVMLLEGGANPDA------------------KDHYEATAMHRAAAKGNLKMIHILLYYKAS-TNIQDTEGNTP  172 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTCCCH
T ss_pred             HcCCHHHHHHHHHCCCCCCC------------------cCCCCCccchhhhhcCCcchhhhhccccce-eeeccCCCCce
Confidence            99999999999999988766                  788999999999999999999999999998 67889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHh
Q 027562          162 LYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                      ||.|+..++.+++++|+++|++++.+|..|+||||+|. .|+.+++++||+
T Consensus       173 L~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         173 LHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             eccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            99999999999999999999999999999999999984 689999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-37  Score=220.43  Aligned_cols=209  Identities=18%  Similarity=0.179  Sum_probs=168.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH-HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV-IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      |+|||+||.+|+.+.|+.|++.. .+.+..+.+|.||||+  |+..|+.+++++|++.... ....+..+..|.+|++++
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~--A~~~g~~~iv~~Ll~~ga~-~~~~~~~~~~~~~~~~~~   77 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHW--SVSFQAHEITSFLLSKMEN-VNLDDYPDDSGWTPFHIA   77 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHH--HHHTTCHHHHHHHHTTCTT-CCGGGCCCTTSCCHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHH--HHHcCCccccchhhhhhcc-cccccccccccccccccc
Confidence            78999999999999999999964 4556888999999999  9999999999999874221 112345677899999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhh--hHhhhh---------------hhhHHHHhhhccccCchHhHHHHhcCChHHHHHH
Q 027562           81 AKFGHSDIVRVLVERAKLLQHEN--EELESG---------------IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEIL  143 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~--~~~~~~---------------~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L  143 (222)
                      +..+..++++.++..+...+...  .....+               +..........+..|.||+|+|+..|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            99999999999988876543321  111111               1111222344678899999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCc
Q 027562          144 TKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE-NSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       144 l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~  216 (222)
                      ++.+....+..|..|+||||+|+..++.+++++|++ .|++++.+|..|+||||+|+   +.+++++|+++|+|
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh---hHHHHHHHHHcCCC
Confidence            998866577889999999999999999999999996 69999999999999999998   45789999999997

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=223.32  Aligned_cols=217  Identities=18%  Similarity=0.138  Sum_probs=148.8

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHH-hhhhcCCCchhHHhhhcccccccHHHHHHHHHh-------------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRL-LTAKTKNTILHVNIRSKESENASTKFVEEILEK-------------------   61 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~-------------------   61 (222)
                      +|+|+.|++.|+.++|++|++.|.+++ ..+..|.||||+  |+..|+.+++++|++....                   
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~--A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHN--AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH--HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHH--HHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            489999999999999999999999988 445689999999  9999999999988663211                   


Q ss_pred             ----------CCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhh----------hhhhh---------
Q 027562           62 ----------CPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELE----------SGIRT---------  112 (222)
Q Consensus        62 ----------~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~----------~~~~~---------  112 (222)
                                ........+..+.++++.|+..+....++.++......+.......          +++..         
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                      0111112223344444444444444444444443322221110000          00000         


Q ss_pred             H-------HHHhhhccccCchHhHHHHhc----CChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh-c
Q 027562          113 A-------RHMIRMTNKEKNTALHEAVCH----QNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLE-N  180 (222)
Q Consensus       113 ~-------~~~~~~~~~~~~~~l~~a~~~----~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~  180 (222)
                      .       ...++..+..+.++...+...    +..+++++|++.|++ ++..+..|.||||.|+..++.+++++|++ .
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            0       001122445555554443322    233466667777776 45678899999999999999999999997 5


Q ss_pred             CCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          181 STSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       181 g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      |++++.+|.+|.||||+|++.|+.+++++||++|||+|+.|
T Consensus       243 g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         243 HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccc
Confidence            99999999999999999999999999999999999999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=2.4e-36  Score=222.67  Aligned_cols=205  Identities=23%  Similarity=0.225  Sum_probs=166.5

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      |+|+.||.+|++++|++|++.|++++..|..|.||||+  |+..|+.+++++|++.    +......+..+.+||+.++.
T Consensus        42 t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~--A~~~g~~eiv~~Ll~~----~~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQ--ACIDDNVDMVKFLVEN----GANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHH--HHHTTCHHHHHHHHHT----TCCTTCCCTTSCCHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHH--HHhcCCceeeeeeccc----cccccccccccccccccccc
Confidence            78999999999999999999999999999999999999  9999999999999874    44456678889999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhhhhH---------HH---------------------------------Hhhhc
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGIRTA---------RH---------------------------------MIRMT  120 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~---------~~---------------------------------~~~~~  120 (222)
                      .++.++++.|+++|...+..+.....++...         ..                                 .....
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            9999999999999876655433211111000         00                                 01124


Q ss_pred             cccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHH
Q 027562          121 NKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAM  200 (222)
Q Consensus       121 ~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~  200 (222)
                      +..|.||||.|+..|+.+++++|++.|++ ++..+..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|++
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             cCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            56788999999999999999999998888 56778889999999999999999999999999999999889999999864


Q ss_pred             hccchhHHHHHhcCCccc
Q 027562          201 KSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       201 ~~~~~~~~~Ll~~ga~~~  218 (222)
                          +++++|.+.+..-|
T Consensus       275 ----~~~~~L~~~~~~~~  288 (291)
T d1s70b_         275 ----DILGYLEELQKKQN  288 (291)
T ss_dssp             ----GGGHHHHHHHHHTT
T ss_pred             ----HHHHHHHHHhhhcc
Confidence                57777776655443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.7e-36  Score=220.05  Aligned_cols=205  Identities=18%  Similarity=0.133  Sum_probs=167.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHH--------HHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCC
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREV--------IKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKG   73 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~--------~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   73 (222)
                      .||||+||..|+.++++.|+...        +|++..|..|.||||+  |+..|+.+++++|++    .+.+++..+..|
T Consensus        34 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~--A~~~g~~~iv~~Ll~----~Gad~n~~~~~g  107 (277)
T d2fo1e1          34 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML--AVLARRRRLVAYLMK----AGADPTIYNKSE  107 (277)
T ss_dssp             CCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCSCCCCTTC
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecc--ccccccccccccccc----cccccccccccc
Confidence            48999999999999999987653        4567788999999999  999999999999987    356678889999


Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhhhhhh---hhhHhhhh------------hhhH--------------HHHhhhccccC
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERAKLLQH---ENEELESG------------IRTA--------------RHMIRMTNKEK  124 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~~~~------------~~~~--------------~~~~~~~~~~~  124 (222)
                      .|||+.|+..++.++++++...+.....   .+......            ....              ....+..+..|
T Consensus       108 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  187 (277)
T d2fo1e1         108 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG  187 (277)
T ss_dssp             CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred             cccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCC
Confidence            9999999999999999988776533221   11100000            0000              11123456678


Q ss_pred             chHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc
Q 027562          125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       125 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  204 (222)
                      .||+|.++..++.+++++++.......+..|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|++.|+.
T Consensus       188 ~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         188 RTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             CCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH
Confidence            99999999999999999877654444678899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHh
Q 027562          205 GKFSYTLS  212 (222)
Q Consensus       205 ~~~~~Ll~  212 (222)
                      +++++|++
T Consensus       268 ~iv~lL~~  275 (277)
T d2fo1e1         268 NIVDIFDR  275 (277)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-37  Score=216.81  Aligned_cols=198  Identities=19%  Similarity=0.174  Sum_probs=169.5

Q ss_pred             ChHHHHHHHcCCchhHHHH----HHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAAAGNLEPFKDI----AREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~l----l~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      +||||+|+..|+.+++..+    ...+.+++..+..|.||||+  |+..|+.+++++|++    .+.+++..|..|.|||
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~--A~~~~~~~iv~~L~~----~g~d~~~~d~~g~t~l   76 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHL--AVITNQPEIAEALLG----AGCDPELRDFRGNTPL   76 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHH--HHHTTCHHHHHCCCS----CCCCSCCCCTTCCCHH
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccc--ccccccccccccccc----cccccccccccccccc
Confidence            6999999999997655554    45666777889999999999  999999888877765    5667788899999999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCC
Q 027562           78 HVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANND  157 (222)
Q Consensus        78 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  157 (222)
                      +.++..+..++++.+++.+.......            ........|.+|+|.|+..++.+++++++..|.......+..
T Consensus        77 ~~~~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~  144 (221)
T d1iknd_          77 HLACEQGCLASVGVLTQSCTTPHLHS------------ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN  144 (221)
T ss_dssp             HHHHHHTCHHHHHHHHHSTTTTSSSC------------GGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT
T ss_pred             ccccccccccccchhhhhcccccccc------------cccccccccchhhhHHhhcCChhheeeecccCcccccccccC
Confidence            99999999999999999875543311            122245668999999999999999999999999866666778


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          158 GKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       158 g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      |.||||+|+..++.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.+.+.
T Consensus       145 G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~~  204 (221)
T d1iknd_         145 GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLEN  204 (221)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGG
T ss_pred             CCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            999999999999999999999999999999999999999999999999999999998763

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=227.15  Aligned_cols=101  Identities=26%  Similarity=0.240  Sum_probs=75.4

Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                      .+..|.+|++.|+..++.+++++|++.|++ ++..+..+.||||.++..+..++++++++.|++++.+|..|.||||+|+
T Consensus       260 ~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~  338 (408)
T d1n11a_         260 GNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA  338 (408)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             ccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHH
Confidence            455677788888888888888888888777 4455666677777777777777777777777777777777777777777


Q ss_pred             HhccchhHHHHHhcCCcccccc
Q 027562          200 MKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       200 ~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      +.|+.+++++|+++|||+++.+
T Consensus       339 ~~g~~~iv~~Ll~~GAd~n~~d  360 (408)
T d1n11a_         339 QQGHTDIVTLLLKNGASPNEVS  360 (408)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HcCCHHHHHHHHHCCCCCCCCC
Confidence            7777777777777777777654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.7e-34  Score=205.74  Aligned_cols=171  Identities=23%  Similarity=0.249  Sum_probs=151.2

Q ss_pred             hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhh
Q 027562           30 TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESG  109 (222)
Q Consensus        30 ~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  109 (222)
                      -+++|.||||+  |+++|+.+++++|++.... ...++.++..|.||||+|+..|+.+++++|++.|++++.        
T Consensus         5 i~~~G~t~Lh~--A~~~~~~~~v~~Ll~~~a~-~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~--------   73 (255)
T d1oy3d_           5 VTEDGDTALHL--AVIHQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV--------   73 (255)
T ss_dssp             CCTTCCCHHHH--HHHTTCHHHHHHHHHHHTT-SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC--------
T ss_pred             CCcCCCCHHHH--HHHcCCHHHHHHHHHcCCC-cccccCcCCCCCCccchHHhhcccccccccccccccccc--------
Confidence            46799999999  9999999999999986433 445778899999999999999999999999999998776        


Q ss_pred             hhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCC----------------------------------------
Q 027562          110 IRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPD----------------------------------------  149 (222)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~----------------------------------------  149 (222)
                                .+..|.||||+|+..++.+++++|++.+..                                        
T Consensus        74 ----------~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (255)
T d1oy3d_          74 ----------AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR  143 (255)
T ss_dssp             ----------CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------
T ss_pred             ----------cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHH
Confidence                      789999999999999999999999875421                                        


Q ss_pred             ------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCcc-CCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          150 ------YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASH-EGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       150 ------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                            ..+..+..|.||||+|+..++.+++++|++++++.+. .+..|.||||+|+..++.+++++|+++|++++.++
T Consensus       144 ~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d  222 (255)
T d1oy3d_         144 DEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM  222 (255)
T ss_dssp             CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             hhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCC
Confidence                  1134566799999999999999999999999998886 46789999999999999999999999999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=100.00  E-value=9.8e-32  Score=188.72  Aligned_cols=190  Identities=19%  Similarity=0.200  Sum_probs=157.9

Q ss_pred             chhHHHHHHHHHHHHh-hhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHH
Q 027562           14 LEPFKDIAREVIKRLL-TAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVL   92 (222)
Q Consensus        14 ~~~v~~ll~~~~~~~~-~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~L   92 (222)
                      .|+|++|++.|.|++. .|.+|.||||+  ||..|+.+++++|++    .+..++..+..+.++++.++..+........
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~--A~~~g~~e~v~~Ll~----~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHL--AARFARADAAKRLLD----AGADANSQDNTGRTPLHAAVAADAMGVFQIL   75 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHH--HHHcCCHHHHHHHHh----hcccccccccccccccccccccccccccccc
Confidence            4789999999999985 68999999999  999999999999988    4556788899999999999999888776665


Q ss_pred             HHhhhhhhhhhh----------------HhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCC
Q 027562           93 VERAKLLQHENE----------------ELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANN  156 (222)
Q Consensus        93 l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~  156 (222)
                      ............                .....+......++..+..|.||++.++..+..++++.+++.+.+ .+..|.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~  154 (209)
T d1ot8a_          76 LRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDD  154 (209)
T ss_dssp             HTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT
T ss_pred             ccccccccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccc-cccccc
Confidence            554322111000                011111122223456888999999999999999999999999988 668899


Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHH
Q 027562          157 DGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYT  210 (222)
Q Consensus       157 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  210 (222)
                      .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|++.|+.+++++|
T Consensus       155 ~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         155 KDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999999999999986

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=7.4e-34  Score=207.75  Aligned_cols=199  Identities=19%  Similarity=0.208  Sum_probs=156.0

Q ss_pred             ChHHHHHHHcC-CchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHH----HhCCccccccccCCChH
Q 027562            2 DPNLFKAAAAG-NLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEIL----EKCPLLLLQVNAKGETP   76 (222)
Q Consensus         2 ~~~l~~A~~~g-~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~t~   76 (222)
                      +||||.+++.+ ..++++.|.+.+.+. ..+..|.||||+  |+..|+.++++.|+...    ...+.+++.+|..|+||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~-~~~~~g~T~Lh~--A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNI-IDPRHNRTVLHW--IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTT-CCCSSCCCHHHH--HHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCc-CCCCCCccHHHH--HHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCee
Confidence            58888665554 556666666666654 233469999999  99999999999987653    34577899999999999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcC---------
Q 027562           77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED---------  147 (222)
Q Consensus        77 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~---------  147 (222)
                      ||+|+..|+.+++++|+++|++++.                  ++..|.||+++|+..++.++++++...+         
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Gad~n~------------------~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGADPTI------------------YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCC------------------CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             ecccccccccccccccccccccccc------------------ccccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            9999999999999999999998877                  4455555555555555555554443321         


Q ss_pred             ------------------------------CC-------CCCCCCCCCCCHHHHHHHcCCHHHHHHHH-hcCCCCccCCC
Q 027562          148 ------------------------------PD-------YPYSANNDGKTPLYMAADYRSSDMVLALL-ENSTSASHEGP  189 (222)
Q Consensus       148 ------------------------------~~-------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g~~~~~~~~  189 (222)
                                                    ..       .....+..|+||||+++..++.+++++++ ..+.+++.++.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~  219 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  219 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCC
Confidence                                          10       11244557899999999999999998765 68889999999


Q ss_pred             CCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          190 NGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       190 ~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      .|+||||+|+..|+.+++++|+++|||+++.+
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d  251 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD  251 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcC
Confidence            99999999999999999999999999999865

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.1e-32  Score=209.26  Aligned_cols=208  Identities=25%  Similarity=0.280  Sum_probs=161.2

Q ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAK   82 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~   82 (222)
                      ||||.||..|+.++|++|++.|.+++..|..|.||||+  |+..|+.+++++|++.    +.+++..+..|.||||+|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~--A~~~g~~~iv~~Ll~~----gadi~~~~~~g~t~L~~A~~   75 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHM--AARAGHTEVAKYLLQN----KAKVNAKAKDDQTPLHCAAR   75 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHH--HHHHTCHHHHHHHHHH----TCCSSCCCTTSCCHHHHHHH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHH--HHHcCCHHHHHHHHHC----cCCCCCCCCCCCCHHHHHHH
Confidence            89999999999999999999999999899999999999  9999999999999984    45688899999999999999


Q ss_pred             hCCHHHHHHHHHhhhhhhhhhhHhhhhh---------------hhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcC
Q 027562           83 FGHSDIVRVLVERAKLLQHENEELESGI---------------RTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKED  147 (222)
Q Consensus        83 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  147 (222)
                      .|+.+++++|+..+............+.               ..........+..+.++++.|+..++.+++++|++.+
T Consensus        76 ~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~  155 (408)
T d1n11a_          76 IGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD  155 (408)
T ss_dssp             HTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999988665433222111110               1111222345667778888888888888888888888


Q ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          148 PDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       148 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      .+ ++..+..|.+||++|+..++.+++++|+++|++++..+..|.||++.+....+.+..+.|+..+...
T Consensus       156 ~~-~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~  224 (408)
T d1n11a_         156 AH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA  224 (408)
T ss_dssp             CC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CC-CCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccc
Confidence            77 5566777888888888888888888888888887777666666666666666666666555555443

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-31  Score=190.39  Aligned_cols=181  Identities=20%  Similarity=0.181  Sum_probs=151.7

Q ss_pred             CCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhH---hhhhhh
Q 027562           35 NTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEE---LESGIR  111 (222)
Q Consensus        35 ~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~---~~~~~~  111 (222)
                      .+|||+  |+..|+.+.++.|++   ..+..++.+|.+|+||||+|+..|+.+++++|+++|++++..+..   +..++.
T Consensus         1 n~pLh~--A~~~g~~~~v~~Ll~---~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~   75 (229)
T d1ixva_           1 NYPLHQ--ACMENEFFKVQELLH---SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFH   75 (229)
T ss_dssp             CCHHHH--HHHHTCHHHHHHHHH---HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHH
T ss_pred             CHhHHH--HHHcCCHHHHHHHHH---cCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccc
Confidence            489999  999999998888766   456678899999999999999999999999999999887654322   111111


Q ss_pred             hH---------H--------HHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Q 027562          112 TA---------R--------HMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMV  174 (222)
Q Consensus       112 ~~---------~--------~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~  174 (222)
                      ..         .        ......+..+.++++.++..++.++++.|+..+.. ....+..|+||||+|+..++.+++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~  154 (229)
T d1ixva_          76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLI  154 (229)
T ss_dssp             HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc-ccccCCCCCCccchhhhccccccc
Confidence            11         0        01223456678999999999999999999999988 557789999999999999999999


Q ss_pred             HHHHhcC-CCCccCCCCCccHHHHHHHhccchhHHHHHh-cCCcccccc
Q 027562          175 LALLENS-TSASHEGPNGKTALHAAAMKSYFGKFSYTLS-VGISILISF  221 (222)
Q Consensus       175 ~~Ll~~g-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~ga~~~~~~  221 (222)
                      ++|++.| .+++.++..|+||||+|+..++.+++++|++ +|+|+++.+
T Consensus       155 ~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d  203 (229)
T d1ixva_         155 ELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  203 (229)
T ss_dssp             HHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCC
T ss_pred             ccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcC
Confidence            9999987 6889999999999999999999999999996 599999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.1e-32  Score=193.03  Aligned_cols=169  Identities=24%  Similarity=0.172  Sum_probs=147.7

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhh
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRT  112 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  112 (222)
                      +|.||||+  |+..|+.+++..+++.+...+..++.+|..|+||||+|+..|+.+++++|++.|++++.           
T Consensus         1 dG~t~Lh~--A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-----------   67 (221)
T d1iknd_           1 DGDSFLHL--AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-----------   67 (221)
T ss_dssp             CCCCTTHH--HHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-----------
T ss_pred             CCChHHHH--HHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccc-----------
Confidence            59999999  99999998888888777777788999999999999999999999999999999988776           


Q ss_pred             HHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCC-----CCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccC
Q 027562          113 ARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP-----YSANNDGKTPLYMAADYRSSDMVLALLENSTSASHE  187 (222)
Q Consensus       113 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~-----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~  187 (222)
                             .+..|.+|++.++..+..++++.|++.+....     ......|.||+|.|+..++.+++++|++.|+.++..
T Consensus        68 -------~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  140 (221)
T d1iknd_          68 -------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ  140 (221)
T ss_dssp             -------CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC
T ss_pred             -------cccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc
Confidence                   78999999999999999999999998765422     234446889999999999999999999999998876


Q ss_pred             C-CCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          188 G-PNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       188 ~-~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                      + ..|.||||+|++.|+.+++++|+++|+|+++.+
T Consensus       141 ~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_         141 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  175 (221)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             cccCCCCccccccccccHHHHHHHHhcCCcccccC
Confidence            5 579999999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.1e-31  Score=177.32  Aligned_cols=153  Identities=20%  Similarity=0.228  Sum_probs=104.4

Q ss_pred             CchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHH
Q 027562           36 TILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH  115 (222)
Q Consensus        36 ~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  115 (222)
                      +|||+  |+..|+.+++++|++    .+.+++.+|..|.||||+|+ .|+.+++++|+++|++++.              
T Consensus         3 ~~Lh~--Aa~~g~~~~v~~Ll~----~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~--------------   61 (156)
T d1ihba_           3 NELAS--AAARGDLEQLTSLLQ----NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL--------------   61 (156)
T ss_dssp             HHHHH--HHHHTCHHHHHHHTT----SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC--------------
T ss_pred             HHHHH--HHHcCCHHHHHHHHH----CCCCcCccCCcccccccccc-ccccccccccccccccccc--------------
Confidence            56666  666666666666555    34445566666666666554 4566666666666665544              


Q ss_pred             HhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCC-CCccCCCCCccH
Q 027562          116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENST-SASHEGPNGKTA  194 (222)
Q Consensus       116 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~g~t~  194 (222)
                          .+..+.++++.++..+..+.++.+++.+.+ .+..+..|.+|+++|+..++.+++++|+++|+ +++.++..|.||
T Consensus        62 ----~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~Tp  136 (156)
T d1ihba_          62 ----KDRTGFAVIHDAARAGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  136 (156)
T ss_dssp             ----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             ----ccccCccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccCCCCCCH
Confidence                566667777777777777777777776666 44666777777777777777777777777665 667777777777


Q ss_pred             HHHHHHhccchhHHHHHhcC
Q 027562          195 LHAAAMKSYFGKFSYTLSVG  214 (222)
Q Consensus       195 l~~a~~~~~~~~~~~Ll~~g  214 (222)
                      ||+|+..++.+++++|+++|
T Consensus       137 L~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         137 CDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHhcC
Confidence            77777777777777777776

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-31  Score=179.21  Aligned_cols=156  Identities=22%  Similarity=0.195  Sum_probs=142.9

Q ss_pred             CChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHH
Q 027562            1 MDPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVA   80 (222)
Q Consensus         1 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a   80 (222)
                      |.++||.||..|+.++|++|++.|.+++..|..|.||||+  |+ .++.+++++|++    .+..++..+..+.++++.+
T Consensus         1 ~~~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~--A~-~~~~ei~~~Ll~----~~a~~~~~~~~~~~~l~~~   73 (156)
T d1ihba_           1 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV--MK-LGNPEIARRLLL----RGANPDLKDRTGFAVIHDA   73 (156)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHH--CC-SSCHHHHHHHHH----TTCCTTCCCTTSCCHHHHH
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccc--cc-cccccccccccc----cccccccccccCccccccc
Confidence            3589999999999999999999999999999999999999  76 678888888876    4566788899999999999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCC
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKT  160 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t  160 (222)
                      +..+....++.+++.+...+.                  .+..|.+|+++|+..++.+++++|+++++...+.+|..|.|
T Consensus        74 ~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~T  135 (156)
T d1ihba_          74 ARAGFLDTLQTLLEFQADVNI------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT  135 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCC
T ss_pred             ccccccccccccccccccccc------------------cccccccccccccccccccccccccccccccccccCCCCCC
Confidence            999999999999999887665                  78899999999999999999999999988557788999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcC
Q 027562          161 PLYMAADYRSSDMVLALLENS  181 (222)
Q Consensus       161 ~l~~a~~~~~~~~~~~Ll~~g  181 (222)
                      |||+|+..++.+++++|+++|
T Consensus       136 pL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         136 ACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-30  Score=182.63  Aligned_cols=200  Identities=16%  Similarity=0.173  Sum_probs=153.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHH----HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIARE----VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPL   77 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~----~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L   77 (222)
                      +||||+||.+|+.+++++|++.    |.+++..+..|.||||+  |+..|+.++++.|++    .+...+..+..+.+++
T Consensus         4 ~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~--A~~~~~~~iv~~Ll~----~ga~~~~~~~~~~~~~   77 (228)
T d1k1aa_           4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL--AVITTLPSVVRLLVT----AGASPMALDRHGQTAA   77 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCcccee--hhccccccccccccc----cccccccccccccccc
Confidence            6899999999999999999874    44566788899999999  999999999998877    3555677888899999


Q ss_pred             HHHHHhCCHHHHHHHHHhhhhhhhhh----hHhhhh---------hhhHH-------HHhhhccccCchHhHHHHhcCCh
Q 027562           78 HVAAKFGHSDIVRVLVERAKLLQHEN----EELESG---------IRTAR-------HMIRMTNKEKNTALHEAVCHQNV  137 (222)
Q Consensus        78 ~~a~~~~~~~~~~~Ll~~~~~~~~~~----~~~~~~---------~~~~~-------~~~~~~~~~~~~~l~~a~~~~~~  137 (222)
                      +.|...++.++++.............    .....+         .....       .........+.++++.|+..+..
T Consensus        78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~  157 (228)
T d1k1aa_          78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL  157 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhh
Confidence            99999999999888776533211100    000000         00000       11123445678888888888888


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHH
Q 027562          138 DVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS  208 (222)
Q Consensus       138 ~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  208 (222)
                      ++++.+++.|.. .+..|..|.||||+|+..++.+++++|+++|++++.+|.+|+||||+|++.|+.+++|
T Consensus       158 ~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         158 SMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhccc-cccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            888888888877 5577888888999998888888888888888888888888899999888888887774

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.97  E-value=2.3e-31  Score=195.88  Aligned_cols=168  Identities=18%  Similarity=0.167  Sum_probs=133.2

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      .||||+|+..|+.+++++|++.+.+....+..+.+||+.  ++..++.++++.+++    .+...+..+..+.+++++|+
T Consensus        74 ~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~--a~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~a~  147 (291)
T d1s70b_          74 LTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHA--AASCGYLDIAEYLIS----QGAHVGAVNSEGDTPLDIAE  147 (291)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHHTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHCC
T ss_pred             CcHHHHHHhcCCceeeeeecccccccccccccccccccc--cccccccchhhcccc----cCcccccccccCcccccccc
Confidence            489999999999999999999998887888899999999  999999999888877    34556778899999999999


Q ss_pred             HhCCHHHHHHHHHhhh-hhhhhh--------------------------hHhhhh---------------hhhHHHHhhh
Q 027562           82 KFGHSDIVRVLVERAK-LLQHEN--------------------------EELESG---------------IRTARHMIRM  119 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~-~~~~~~--------------------------~~~~~~---------------~~~~~~~~~~  119 (222)
                      ..+..+.++.++.... ......                          ..+.++               +......++.
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~  227 (291)
T d1s70b_         148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI  227 (291)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             ccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccc
Confidence            9999999888886421 111000                          001111               1111234566


Q ss_pred             ccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Q 027562          120 TNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       120 ~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  180 (222)
                      ++..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||||+|++    +++++|.+.
T Consensus       228 ~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~  283 (291)
T d1s70b_         228 KDYDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEEL  283 (291)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHH
Confidence            889999999999999999999999999999 67889999999999965    566666553

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=173.27  Aligned_cols=151  Identities=16%  Similarity=0.185  Sum_probs=125.8

Q ss_pred             chhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHH
Q 027562           37 ILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHM  116 (222)
Q Consensus        37 ~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~  116 (222)
                      .|+.  |+..|+.++++.+++   ..+..++..|..|+||||+|+ .|+.+++++|++.+.+++.               
T Consensus         5 ~L~~--Aa~~g~~~~vk~lL~---~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~---------------   63 (156)
T d1bd8a_           5 RLSG--AAARGDVQEVRRLLH---RELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV---------------   63 (156)
T ss_dssp             HHHH--HHHHTCHHHHHHHHH---TTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC---------------
T ss_pred             HHHH--HHHcCCHHHHHHHHH---hCCCCCCccCCCCCccccccc-ccccccccccccccccccc---------------
Confidence            4777  788888777777765   355667778888888888876 4778888888888877665               


Q ss_pred             hhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHH
Q 027562          117 IRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALH  196 (222)
Q Consensus       117 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  196 (222)
                         .+..|.+|++.++..+..++++++++.|++ .+..|..|+||||+|+..++.+++++|+ .|++++.+|..|+||||
T Consensus        64 ---~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~-~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          64 ---QDTSGTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLE  138 (156)
T ss_dssp             ---CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHH
T ss_pred             ---cccccccccccccccccccccccccccccc-cccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHH
Confidence               677788899999999999999999998887 5577888999999999999999998777 68899999999999999


Q ss_pred             HHHHhccchhHHHHHhc
Q 027562          197 AAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       197 ~a~~~~~~~~~~~Ll~~  213 (222)
                      +|+..|+.+++++|++|
T Consensus       139 ~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhh
Confidence            99999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-30  Score=170.52  Aligned_cols=151  Identities=23%  Similarity=0.250  Sum_probs=134.5

Q ss_pred             hHHHHHHHcCCchhHHHHHHH-HHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            3 PNLFKAAAAGNLEPFKDIARE-VIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         3 ~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      ..|+.||.+|++++|++|++. +.+++..|..|.||||+  |+. ++.+++++|++    .+..++..+..|.+|++.++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~--A~~-~~~~~v~~Ll~----~~~~~~~~~~~~~~~l~~~~   76 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV--MMF-GSTAIALELLK----QGASPNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH--SCT-TCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccc--ccc-ccccccccccc----cccccccccccccccccccc
Confidence            579999999999999999985 67888889999999999  764 67788877776    34567888889999999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ..++.+++++++++|.+++.                  ++..|.||+|+|+..|+.+++++|+ .|++ .+..|..|+||
T Consensus        77 ~~~~~~~~~~~l~~~~~~n~------------------~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~Tp  136 (156)
T d1bd8a_          77 RTGFLDTLKVLVEHGADVNV------------------PDGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTP  136 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCC------------------CCTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCH
T ss_pred             cccccccccccccccccccc------------------ccCCCCeeecccccccccccccccc-cccc-ccccCCCCCCH
Confidence            99999999999999988766                  7889999999999999999999887 5777 66889999999


Q ss_pred             HHHHHHcCCHHHHHHHHhc
Q 027562          162 LYMAADYRSSDMVLALLEN  180 (222)
Q Consensus       162 l~~a~~~~~~~~~~~Ll~~  180 (222)
                      ||+|+..++.+++++|+++
T Consensus       137 L~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         137 LELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHhh
Confidence            9999999999999999875

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.2e-29  Score=167.41  Aligned_cols=149  Identities=19%  Similarity=0.213  Sum_probs=124.7

Q ss_pred             CchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHH
Q 027562           36 TILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARH  115 (222)
Q Consensus        36 ~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~  115 (222)
                      ||||.  |++.|+.+++++|++..    .+++ .+..|+||||+|+..++.++++.++........              
T Consensus         4 t~L~~--Aa~~g~~~~v~~LL~~g----a~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~--------------   62 (153)
T d1awcb_           4 KKLLE--AARAGQDDEVRILMANG----APFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA--------------   62 (153)
T ss_dssp             HHHHH--HHHHTCHHHHHHHHHHT----CCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC--------------
T ss_pred             HHHHH--HHHCCCHHHHHHHHHcC----CCcc-cccCCCccccccccccccccccccccccccccc--------------
Confidence            77888  78888888888887742    2233 477888899998888888888888877655443              


Q ss_pred             HhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHH
Q 027562          116 MIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTAL  195 (222)
Q Consensus       116 ~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l  195 (222)
                          .+..+.++++.++.....++++++...+.+ ....+..|+||||+|+..++.+++++|+++|++++.+|..|.|||
T Consensus        63 ----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl  137 (153)
T d1awcb_          63 ----RTKVDRTPLHMAASEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF  137 (153)
T ss_dssp             ----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ----cccccccccccccccccceeeecccccCCc-cccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHH
Confidence                556677889999999999999999998888 557888999999999999999999999999999999999999999


Q ss_pred             HHHHHhccchhHHHH
Q 027562          196 HAAAMKSYFGKFSYT  210 (222)
Q Consensus       196 ~~a~~~~~~~~~~~L  210 (222)
                      |+|+..|+.+++++|
T Consensus       138 ~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         138 DISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHhC
Confidence            999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.96  E-value=6.5e-31  Score=197.67  Aligned_cols=191  Identities=15%  Similarity=0.060  Sum_probs=148.0

Q ss_pred             ChHHHHHHHcCCchhHHH---HHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccc--cCCChH
Q 027562            2 DPNLFKAAAAGNLEPFKD---IAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVN--AKGETP   76 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~---ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~t~   76 (222)
                      .|||+.|+++|+.+++++   |++.|.+++..+..|+||||+  ||+.|+.+++++|++.    +..++..+  ..|+||
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~--Aa~~G~~~~v~~Ll~~----g~~~~~~~~~~~g~t~  164 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRL--AAENGHLHVLNRLCEL----APTEIMAMIQAENYHA  164 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHH--HHHTTCHHHHHHHHHS----CTTTHHHHHSHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHH--HHHCCCHHHHHHHHHc----CCCccccccccCCCCh
Confidence            379999999999877665   788899888899999999999  9999999999999883    33444443  468999


Q ss_pred             HHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCC-----
Q 027562           77 LHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYP-----  151 (222)
Q Consensus        77 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~-----  151 (222)
                      ||+|+..|+.+++++|++.|+....               .+..+..+.+|++.|+.+|+.+++++|++.|++..     
T Consensus       165 L~~Aa~~g~~~iv~~Ll~~~~~~~~---------------~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~  229 (346)
T d2ajaa1         165 FRLAAENGHLHVLNRLCELAPTEAT---------------AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIH  229 (346)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHH---------------HHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHC
T ss_pred             hHHHHHHhhHHHHHHHHHcCCcccc---------------cccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHH
Confidence            9999999999999999999876543               12244567788888999999999999998764200     


Q ss_pred             ---------------------------CCCCCC----------------CCCHHHHHHHcCCHHHHHHHHhcCCC-----
Q 027562          152 ---------------------------YSANND----------------GKTPLYMAADYRSSDMVLALLENSTS-----  183 (222)
Q Consensus       152 ---------------------------~~~~~~----------------g~t~l~~a~~~~~~~~~~~Ll~~g~~-----  183 (222)
                                                 ......                +.++++.++..+..+++++|++.+..     
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~  309 (346)
T d2ajaa1         230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP  309 (346)
T ss_dssp             TTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSS
T ss_pred             HHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcc
Confidence                                       000011                13567778888889999999987753     


Q ss_pred             CccCCCCCccHHHHHHHhccchhHHHHHhc
Q 027562          184 ASHEGPNGKTALHAAAMKSYFGKFSYTLSV  213 (222)
Q Consensus       184 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  213 (222)
                      .+..+.+|+||||+|++.|+.+++++||+.
T Consensus       310 ~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~  339 (346)
T d2ajaa1         310 TATIPGDANELLRLALRLGNQGACALLLSI  339 (346)
T ss_dssp             CCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred             cccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence            334456799999999999999999999975

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.8e-29  Score=167.09  Aligned_cols=150  Identities=26%  Similarity=0.265  Sum_probs=133.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCChHHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGETPLHVAA   81 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~~a~   81 (222)
                      +|||+.|++.|+.++|++|++.|.+.+ .+..|.||||+  |+..++.+.++.+..    ........+..+.++++.++
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~--a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~   75 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHL--AAQYGHFSTTEVLLR----AGVSRDARTKVDRTPLHMAA   75 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHH--HHHHTCHHHHHHHHT----TTCCTTCCCTTCCCHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccc--ccccccccccccccc----cccccccccccccccccccc
Confidence            689999999999999999999998664 67899999999  999999887766655    33334556778889999999


Q ss_pred             HhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCH
Q 027562           82 KFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTP  161 (222)
Q Consensus        82 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  161 (222)
                      ...+.++++++...+.+.+.                  .+..|.||||+|+..|+.+++++|++.|++ ++..|..|.||
T Consensus        76 ~~~~~~~~~~l~~~~~~~~~------------------~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tp  136 (153)
T d1awcb_          76 SEGHANIVEVLLKHGADVNA------------------KDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTA  136 (153)
T ss_dssp             HHTCHHHHHHHHTTTCCTTC------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred             ccccceeeecccccCCcccc------------------ccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCH
Confidence            99999999999999887665                  789999999999999999999999999999 66889999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 027562          162 LYMAADYRSSDMVLAL  177 (222)
Q Consensus       162 l~~a~~~~~~~~~~~L  177 (222)
                      ||+|+.+++.+++++|
T Consensus       137 l~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         137 FDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHhC
Confidence            9999999999999876

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.1e-28  Score=158.89  Aligned_cols=120  Identities=18%  Similarity=0.139  Sum_probs=110.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCC
Q 027562           73 GETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPY  152 (222)
Q Consensus        73 ~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~  152 (222)
                      +.++||.|++.|+.+++++|+++|++++.                  ++..|.||+|.|+ .|+.+++++|++.|++ ++
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~------------------~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~-~~   62 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA------------------PNSYGRRPIQVMM-MGSARVAELLLLHGAE-PN   62 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC------------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc------------------ccccccccccccc-cccccccccccccccc-cc
Confidence            56899999999999999999999998776                  7899999999775 7899999999999999 55


Q ss_pred             CCCCCCC-CHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHh
Q 027562          153 SANNDGK-TPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       153 ~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                      ..+..+. ||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        63 ~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          63 CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6666655 79999999999999999999999999999999999999999999999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-28  Score=173.34  Aligned_cols=153  Identities=17%  Similarity=0.163  Sum_probs=122.4

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccc---------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLL---------------   66 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~---------------   66 (222)
                      .||||.|+..|+.+++++|++.|.+.+.....|.++++.  +...+..++++.............               
T Consensus        41 ~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  118 (228)
T d1k1aa_          41 QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL--ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAV  118 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHH
T ss_pred             Cccceehhccccccccccccccccccccccccccccccc--ccccccccchhhhhhcccccccccccccccccccccccc
Confidence            589999999999999999999999888888899999999  777777777666654422221111               


Q ss_pred             -------------------cccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchH
Q 027562           67 -------------------LQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTA  127 (222)
Q Consensus        67 -------------------~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (222)
                                         ......+.++|+.|+..+...+++.+++.|...+.                  ++..|.||
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~------------------~d~~g~t~  180 (228)
T d1k1aa_         119 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA------------------QMYSGSSA  180 (228)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC------------------BCTTSCBH
T ss_pred             ccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhcccccc------------------ccccCcch
Confidence                               22233566777777777777777777776655444                  78899999


Q ss_pred             hHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Q 027562          128 LHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVL  175 (222)
Q Consensus       128 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~  175 (222)
                      +|+|+..|+.+++++|++.|++ ++.+|..|+||||+|+++++.++|+
T Consensus       181 L~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         181 LHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence            9999999999999999999999 6788999999999999999888874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=7.3e-29  Score=158.15  Aligned_cols=116  Identities=24%  Similarity=0.259  Sum_probs=106.4

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCC
Q 027562           74 ETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYS  153 (222)
Q Consensus        74 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~  153 (222)
                      .|||++|++.|+.+++++|++.|++++.                  .+..|.||+|+|+..|+.+++++|++.|++ .+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~------------------~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d-in~   63 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR------------------TLEGGRKPLHYAADCGQLEILEFLLLKGAD-INA   63 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC------------------CSSSSCCTTHHHHHHSTTTHHHHHHHSSCT-TTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc------------------ccccccccccccccccccccccccccccce-eee
Confidence            5899999999999999999999998776                  789999999999999999999999999999 668


Q ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHh
Q 027562          154 ANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLS  212 (222)
Q Consensus       154 ~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  212 (222)
                      .|..|+||||+|+.+++.+++++|+++|++++.+|.+|.||||+|.    .+.++.||+
T Consensus        64 ~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~----~~~i~~LL~  118 (118)
T d1myoa_          64 PDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD----NQAIKALLQ  118 (118)
T ss_dssp             CSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS----STTTGGGGC
T ss_pred             cccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh----HHHHHHhcC
Confidence            8999999999999999999999999999999999999999999883    355666653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.95  E-value=3.7e-27  Score=165.16  Aligned_cols=155  Identities=17%  Similarity=0.148  Sum_probs=132.5

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHH--------------------------
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFV--------------------------   55 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l--------------------------   55 (222)
                      +||||+||.+|+.+++++|++.|.+++..+..+.++++.  ++..+........                          
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHA--AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA  101 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH--HHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence            589999999999999999999999988888899999998  5555544332222                          


Q ss_pred             ----HHHHHhCCccccccccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHH
Q 027562           56 ----EEILEKCPLLLLQVNAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEA  131 (222)
Q Consensus        56 ----~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a  131 (222)
                          .+.+...+..++..+..|.|||+.++..+..++++.+++.+.+++.                  .|..|.||||+|
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~------------------~d~~g~TpL~~A  163 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA------------------QDDKDETPLFLA  163 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC------------------CCTTCCCHHHHH
T ss_pred             chhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc------------------cccccccccchh
Confidence                2223334556677888999999999999999999999999887666                  789999999999


Q ss_pred             HhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Q 027562          132 VCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLAL  177 (222)
Q Consensus       132 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  177 (222)
                      +..|+.+++++|++.|++ ++..|..|+||||+|+++++.++|++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFAN-REITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999 668899999999999999999999976

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.3e-27  Score=153.75  Aligned_cols=123  Identities=24%  Similarity=0.243  Sum_probs=112.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHhcCCCCCCCC
Q 027562           75 TPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTKEDPDYPYSA  154 (222)
Q Consensus        75 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~  154 (222)
                      ++|+.|+..|+.+++++|+++|++++.                  ++..|.||||+|+..|+.+++++|++.|++ .+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~------------------~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~-~~~~   63 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL------------------PNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAA   63 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC------------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc------------------cccccccccccccccccccccccccccccc-cccc
Confidence            679999999999999999999998877                  789999999999999999999999999998 6788


Q ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCC-CCccHHHHH--HHhccchhHHHHHhcCCc
Q 027562          155 NNDGKTPLYMAADYRSSDMVLALLENSTSASHEGP-NGKTALHAA--AMKSYFGKFSYTLSVGIS  216 (222)
Q Consensus       155 ~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~-~g~t~l~~a--~~~~~~~~~~~Ll~~ga~  216 (222)
                      |..|+||||+|+.+++.+++++|+++|++++..+. .+.||++++  ...|+.+++++|+..+.+
T Consensus        64 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~  128 (130)
T d1ycsb1          64 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK  128 (130)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH
T ss_pred             cccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHh
Confidence            99999999999999999999999999999998764 588887765  577899999999987653

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.1e-27  Score=176.88  Aligned_cols=181  Identities=16%  Similarity=0.143  Sum_probs=119.7

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccc---cccHHHHHHHHHhCCccccccccCCChHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESE---NASTKFVEEILEKCPLLLLQVNAKGETPLH   78 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~t~L~   78 (222)
                      +||||+||..|+.++|++|++.|++++..|..|+||||.  |+..++   ...++.+++++..   .+...|..|+||||
T Consensus       108 ~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~--A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK--AVKSVNNYDSGTFEALLDYLYP---CLILEDSMNRTILH  182 (301)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHH--HHHSSHHHHTTCHHHHHHHHGG---GGGEECTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHH--hhhcccchhhhhHHHHHHHHhh---hhhhcccccCCHHH
Confidence            489999999999999999999999999999999999999  766654   4556666666543   35667889999999


Q ss_pred             HHHHhCC----HHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHH-----HHHHhcCCC
Q 027562           79 VAAKFGH----SDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVV-----EILTKEDPD  149 (222)
Q Consensus        79 ~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~-----~~Ll~~~~~  149 (222)
                      .++..+.    ...+++.++.....-.+.         ...........+.++++.+........+     ..++...  
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  251 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKK---------QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM--  251 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHG---------GGCCEEEC----------------CHHHHHCSHHHHHHHT--
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhc---------CCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC--
Confidence            8886543    344444333221110000         0000011222333344443332222222     2223322  


Q ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHH
Q 027562          150 YPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAA  199 (222)
Q Consensus       150 ~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~  199 (222)
                       .+.+|..|+||||+|++.++.+++++|+++|++++.+|..|.|||++|+
T Consensus       252 -in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 -LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             -TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             -ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence             4578999999999999999999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=163.39  Aligned_cols=182  Identities=23%  Similarity=0.206  Sum_probs=142.5

Q ss_pred             cCCCchhHHhhhcccccccHHHHHHHHHhCCcccccc-ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhh----
Q 027562           33 TKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQV-NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELE----  107 (222)
Q Consensus        33 ~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~----  107 (222)
                      ++.|+||.  |++.|+.+++++|++    .+.+++.+ +..|+||||+|+..|+.+++++|++.+...........    
T Consensus         4 ~~~~~L~~--Ai~~~~~e~vk~Ll~----~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~   77 (285)
T d1wdya_           4 EDNHLLIK--AVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFL   77 (285)
T ss_dssp             HHHHHHHH--HHHTTCHHHHHHHHH----TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCcHHHHH--HHHcCCHHHHHHHHH----CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhH
Confidence            57799999  999999999999987    34556654 45799999999999999999999998765433221100    


Q ss_pred             -----------------------------hhhhh---------H----------------HHHhhhccccCchHhHHHHh
Q 027562          108 -----------------------------SGIRT---------A----------------RHMIRMTNKEKNTALHEAVC  133 (222)
Q Consensus       108 -----------------------------~~~~~---------~----------------~~~~~~~~~~~~~~l~~a~~  133 (222)
                                                   +.+..         .                ..........|.||||+|+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  157 (285)
T d1wdya_          78 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE  157 (285)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred             HHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHH
Confidence                                         00000         0                01112345568999999999


Q ss_pred             cCChHHHHHHHhc-CCCCCCCCCCCCCCHHHHHHHcC----CHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHH
Q 027562          134 HQNVDVVEILTKE-DPDYPYSANNDGKTPLYMAADYR----SSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFS  208 (222)
Q Consensus       134 ~~~~~~~~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~  208 (222)
                      .|+.+++++|++. |.+ ++..+..+.++...+....    ..+++++|+++|++++.++..|.||||.|+..++.++++
T Consensus       158 ~~~~~~~~~Ll~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~  236 (285)
T d1wdya_         158 KGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ  236 (285)
T ss_dssp             HTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCHHHHHHHHhccCCC-cccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHH
Confidence            9999999999976 555 6688888988887765443    357999999999999999999999999999999999999


Q ss_pred             HHHh-cCCcccccc
Q 027562          209 YTLS-VGISILISF  221 (222)
Q Consensus       209 ~Ll~-~ga~~~~~~  221 (222)
                      +|++ .|++++..+
T Consensus       237 ~lL~~~g~din~~d  250 (285)
T d1wdya_         237 RLLEQEHIEINDTD  250 (285)
T ss_dssp             HHHHSSSCCTTCCC
T ss_pred             HHHHcCCCCCcCCC
Confidence            9997 599998765

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3e-25  Score=147.29  Aligned_cols=130  Identities=17%  Similarity=0.070  Sum_probs=112.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhc---CChHHHHHHHhcCCCCCC
Q 027562           76 PLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCH---QNVDVVEILTKEDPDYPY  152 (222)
Q Consensus        76 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~---~~~~~~~~Ll~~~~~~~~  152 (222)
                      .|..|++.++...+..++..|.++....            .....+..|+||||+|+..   +..+++++|++.|++ ++
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~------------~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-in   75 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKI------------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LD   75 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBC------------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TT
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCC------------CcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC-hh
Confidence            4567889999999888888887654410            0112366799999999974   678999999999999 67


Q ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccchhHHHHHhcCCccc
Q 027562          153 SANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISIL  218 (222)
Q Consensus       153 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~  218 (222)
                      .+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|++.|+.+++++|++.++...
T Consensus        76 ~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          76 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             hhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            899999999999999999999999999999999999999999999999999999999999987543

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.7e-26  Score=144.96  Aligned_cols=96  Identities=19%  Similarity=0.169  Sum_probs=92.3

Q ss_pred             chHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccc
Q 027562          125 NTALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYF  204 (222)
Q Consensus       125 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~  204 (222)
                      .|||++|+..|+.+++++|++.|++ ++..+..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc-cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            4799999999999999999999999 678899999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCcccccc
Q 027562          205 GKFSYTLSVGISILISF  221 (222)
Q Consensus       205 ~~~~~Ll~~ga~~~~~~  221 (222)
                      +++++|+++|+|++.++
T Consensus        82 ~~v~~Ll~~Gad~~~~d   98 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKG   98 (118)
T ss_dssp             HHHHHHHTTCCCSSSSS
T ss_pred             hhhhhhhcccccceeeC
Confidence            99999999999999865

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-26  Score=148.16  Aligned_cols=119  Identities=17%  Similarity=0.061  Sum_probs=106.7

Q ss_pred             ChHHHHHHHcCCchhHHHHHHHHHHHHhhhhcCCCchhHHhhhcccccccHHHHHHHHHhCCccccccccCCC-hHHHHH
Q 027562            2 DPNLFKAAAAGNLEPFKDIAREVIKRLLTAKTKNTILHVNIRSKESENASTKFVEEILEKCPLLLLQVNAKGE-TPLHVA   80 (222)
Q Consensus         2 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~~~L~~~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-t~L~~a   80 (222)
                      .++||.|+.+|++++|++|++.|.+++..+..|.||||+  |+ .|+.+++++|++    .+..++..+..+. ||||.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~--a~-~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~L~~A   76 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV--MM-MGSARVAELLLL----HGAEPNCADPATLTRPVHDA   76 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTS--SC-TTCHHHHHHHHT----TTCCCCCCCTTTCCCHHHHH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccc--cc-cccccccccccc----cccccccccccccccccccc
Confidence            468999999999999999999999999999999999998  65 588888888876    4556777777765 699999


Q ss_pred             HHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           81 AKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        81 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      ++.|+.+++++|+++|++++.                  +|..|.||+|+|+..|+.+++++|++
T Consensus        77 ~~~g~~~~v~~Ll~~ga~~~~------------------~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          77 AREGFLDTLVVLHRAGARLDV------------------RDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHHHHTCCSSC------------------CCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccc------------------ccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999998776                  78999999999999999999999985

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.2e-25  Score=165.79  Aligned_cols=135  Identities=19%  Similarity=0.162  Sum_probs=100.2

Q ss_pred             ccccc-ccCCChHHHHHHHhCCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCC-------
Q 027562           65 LLLQV-NAKGETPLHVAAKFGHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQN-------  136 (222)
Q Consensus        65 ~~~~~-~~~~~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~-------  136 (222)
                      .++.. |..|+||||+|+..|+.+++++|++.|++++.                  +|..|.||||.|+..++       
T Consensus        98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~------------------~d~~G~TpL~~A~~~~~~~~~~~~  159 (301)
T d1sw6a_          98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY------------------GDNMGESCLVKAVKSVNNYDSGTF  159 (301)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB------------------CCTTCCCHHHHHHHSSHHHHTTCH
T ss_pred             CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc------------------CCcccccHHHHhhhcccchhhhhH
Confidence            44543 78888999999988888899998888888776                  77888888888887553       


Q ss_pred             hHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCC----H--------HHHHHHHhcCCC---------------------
Q 027562          137 VDVVEILTKEDPDYPYSANNDGKTPLYMAADYRS----S--------DMVLALLENSTS---------------------  183 (222)
Q Consensus       137 ~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~----~--------~~~~~Ll~~g~~---------------------  183 (222)
                      .++++++...    ....|..|+||||.++..+.    .        .+++++.+.+..                     
T Consensus       160 ~~ll~~l~~~----~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (301)
T d1sw6a_         160 EALLDYLYPC----LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK  235 (301)
T ss_dssp             HHHHHHHGGG----GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred             HHHHHHHhhh----hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcch
Confidence            1344444332    33567788888887765432    1        123344443322                     


Q ss_pred             ----------------CccCCCCCccHHHHHHHhccchhHHHHHhcCCcccccc
Q 027562          184 ----------------ASHEGPNGKTALHAAAMKSYFGKFSYTLSVGISILISF  221 (222)
Q Consensus       184 ----------------~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~~~~~  221 (222)
                                      ++.+|..|+||||+|++.|+.+++++|+++|||+++.+
T Consensus       236 ~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n  289 (301)
T d1sw6a_         236 DSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  289 (301)
T ss_dssp             CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence                            67889999999999999999999999999999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-25  Score=142.46  Aligned_cols=95  Identities=21%  Similarity=0.256  Sum_probs=91.1

Q ss_pred             hHhHHHHhcCChHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCccCCCCCccHHHHHHHhccch
Q 027562          126 TALHEAVCHQNVDVVEILTKEDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTSASHEGPNGKTALHAAAMKSYFG  205 (222)
Q Consensus       126 ~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~a~~~~~~~  205 (222)
                      ++|+.|+..|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++|++++.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC-ccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            579999999999999999999999 6788999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCcccccc
Q 027562          206 KFSYTLSVGISILISF  221 (222)
Q Consensus       206 ~~~~Ll~~ga~~~~~~  221 (222)
                      ++++|+++||+++..+
T Consensus        82 ~v~~Ll~~ga~v~~~~   97 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMT   97 (130)
T ss_dssp             HHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCCccccc
Confidence            9999999999998654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=1.1e-26  Score=174.57  Aligned_cols=135  Identities=17%  Similarity=0.148  Sum_probs=98.6

Q ss_pred             ccccccCCChHHHHHHHhCCHHHHHH---HHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHH
Q 027562           66 LLQVNAKGETPLHVAAKFGHSDIVRV---LVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEI  142 (222)
Q Consensus        66 ~~~~~~~~~t~L~~a~~~~~~~~~~~---Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~  142 (222)
                      ++.++..|.|||++|+..|+.+++++   |++.|+.++.                  .+..|.||||+|+..|+.+++++
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~------------------~~~~g~taL~~Aa~~G~~~~v~~  144 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV------------------IQAENYQAFRLAAENGHLHVLNR  144 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--------------------CHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc------------------cCCCCCCHHHHHHHCCCHHHHHH
Confidence            34556678888888888888766655   6777777665                  67788888888888888888888


Q ss_pred             HHhcCCCCCCCCC--CCCCCHHHHHHHcCCHHHHHHHHhcCCCCc---cCCCCCccHHHHHHHhccchhHHHHHhcCCcc
Q 027562          143 LTKEDPDYPYSAN--NDGKTPLYMAADYRSSDMVLALLENSTSAS---HEGPNGKTALHAAAMKSYFGKFSYTLSVGISI  217 (222)
Q Consensus       143 Ll~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~g~t~l~~a~~~~~~~~~~~Ll~~ga~~  217 (222)
                      |++.|++ .+..+  ..|+||||+|+..|+.+++++|++.|++..   ..+..+.||++.|+..|+.+++++|+++|+++
T Consensus       145 Ll~~g~~-~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         145 LCELAPT-EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHSCTT-THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             HHHcCCC-ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            8888877 33333  357788888888888888888888876543   33345667777788888888888888888877


Q ss_pred             cc
Q 027562          218 LI  219 (222)
Q Consensus       218 ~~  219 (222)
                      +.
T Consensus       224 ~~  225 (346)
T d2ajaa1         224 AY  225 (346)
T ss_dssp             HH
T ss_pred             ch
Confidence            64

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=2.4e-23  Score=137.96  Aligned_cols=96  Identities=25%  Similarity=0.309  Sum_probs=80.1

Q ss_pred             cccCCChHHHHHHHh---CCHHHHHHHHHhhhhhhhhhhHhhhhhhhHHHHhhhccccCchHhHHHHhcCChHHHHHHHh
Q 027562           69 VNAKGETPLHVAAKF---GHSDIVRVLVERAKLLQHENEELESGIRTARHMIRMTNKEKNTALHEAVCHQNVDVVEILTK  145 (222)
Q Consensus        69 ~~~~~~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~  145 (222)
                      .+..|+||||+|++.   +..+++++|+++|++++.                  ++..|.||||+|+..|+.+++++|++
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~------------------~d~~g~TpLh~A~~~~~~~~v~~Ll~  102 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK------------------QTGKGSTALHYCCLTDNAECLKLLLR  102 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC------------------CCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh------------------hhhhhccccccccccccccccccccc
Confidence            356788888888875   567888889988887766                  78888999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC
Q 027562          146 EDPDYPYSANNDGKTPLYMAADYRSSDMVLALLENSTS  183 (222)
Q Consensus       146 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~  183 (222)
                      .|++ .+..|..|+||||+|+..++.+++++|++.++.
T Consensus       103 ~gad-~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         103 GKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             TTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             cCcc-ccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            8888 567888899999999999999999988886653