Citrus Sinensis ID: 027587

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAEESL
Secondary Structure (PSIPRED)
ccHHHHHHHHccccccccccccccccHHcccccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHcHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccHHHcHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcc
Coil and Loop (DISEMBL)
MTVDGILRNvyntttasttdatLLDAQITLvdtnsnlianendqngavsagamkSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAgavedsaggddmdVKAFANVTERlsggvyafdqpaaaspfqveGAIVGFGngvevvggrgkrgrvmlepLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAEESL
Flexible Loop (DISEMBL)
mtvdgilrnvyntttasttdatlLDAQITLVDTNSNLIanendqngavsagamksvDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVggrgkrgrvmlepldkaaqqrqRRMIKNResaarsrerkqAYQVELESLAVRleeeneqllkekviryvtnaeesl
Low Complexity Region (SEG)
MTVDGILRNVYNtttasttdatlldaQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIvgfgngvevvggrgkrgrvMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRleeeneqllkekVIRYVTNAEESL
Disordered region (IsUnstruct)
****GILRNVYNTTTASTTDATLLDAQITLVDTNSNLIA****************VDDVWREIV******************EDFLAK************MDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRG***********************************************************KVIRYV*******
Disordered Region (DISOPRED)
MTVDGILRNVYN*********************************************DVW***********************DFLAKAGA***********************************************************************************************YQVELESLAVRLEEEN*************NA****
Disordered Region (DISEMBL)
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDK************************AYQVELESLAVRLEEENEQLLKEKVIRYVTNAEESL
Disordered Region (DISPRO)
*T*DGI***VYNTT****************************************SVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFA************FD*PAA**************************************************SAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERxxxxxxxxxxxxxxxxxxxxxxxxxKVIRYVTNAEESL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
P42777	270	G-box-binding factor 4 OS	no	no	0.647	0.529	0.65	7e-42
Q9LES3	297	ABSCISIC ACID-INSENSITIVE	no	no	0.705	0.525	0.361	2e-17
Q9C5Q2	262	ABSCISIC ACID-INSENSITIVE	no	no	0.705	0.595	0.368	1e-14
Q9SJN0	442	Protein ABSCISIC ACID-INS	no	no	0.760	0.380	0.301	6e-13
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.312	0.165	0.423	2e-10
Q6ZDF3	318	bZIP transcription factor	no	no	0.380	0.264	0.387	2e-10
Q9M7Q3	454	ABSCISIC ACID-INSENSITIVE	no	no	0.140	0.068	0.615	4e-10
Q9M7Q2	431	ABSCISIC ACID-INSENSITIVE	no	no	0.294	0.150	0.529	6e-10
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.334	0.188	0.5	1e-09
Q84JK2	285	Protein FD OS=Arabidopsis	no	no	0.199	0.154	0.590	2e-06

>sp|P42777|GBF4_ARATH G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1

 Score =  170 bits (430), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 17/160 (10%)

Query: 54  KSVDDVWREIVSGEKKE--MKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTE 111
           KSVDDVW+EIVSGE+K   MKEE  +++MTLEDFLAKA    D    D++DVK     TE
Sbjct: 85  KSVDDVWKEIVSGEQKTIMMKEEEPEDIMTLEDFLAKAEM--DEGASDEIDVKI---PTE 139

Query: 112 RLSG-GVYAFDQPAA-ASPFQ-VEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQR 168
           RL+  G Y FD P    S FQ VEG++   G GV     RGKRGRVM+E +DKAA QRQ+
Sbjct: 140 RLNNDGSYTFDFPMQRHSSFQMVEGSM---GGGV----TRGKRGRVMMEAMDKAAAQRQK 192

Query: 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           RMIKNRESAARSRERKQAYQVELE+LA +LEEENEQLLKE
Sbjct: 193 RMIKNRESAARSRERKQAYQVELETLAAKLEEENEQLLKE 232

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LES3|AI5L2_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 2 OS=Arabidopsis thaliana GN=DPBF3 PE=1 SV=1

 Score = 89.0 bits (219), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 99/191 (51%), Gaps = 35/191 (18%)

Query: 54  KSVDDVWREIV------SGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMD----- 102
           K+VD+VW++I       S  ++  K+  + EM TLED L KAG V ++  G + D     
Sbjct: 91  KTVDEVWKDIQQNKNGGSAHERRDKQPTLGEM-TLEDLLLKAGVVTETIPGSNHDGPVGG 149

Query: 103 ------VKAFANVTERLSGGVY----AFDQPAAASPFQV--------EGAIVGFGNGVEV 144
                      N+T+      Y    +  QP A  P+ V        + +++G  +  + 
Sbjct: 150 GSAGSGAGLGQNITQVGPWIQYHQLPSMPQPQAFMPYPVSDMQAMVSQSSLMGGLSDTQT 209

Query: 145 VGGRGKRGRVML-EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENE 203
            G    R RV   E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE    RLEEENE
Sbjct: 210 PG----RKRVASGEVVEKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENE 265

Query: 204 QLLKEKVIRYV 214
           +L K+K +  +
Sbjct: 266 RLRKQKEVEKI 276

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5Q2|AI5L3_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 3 OS=Arabidopsis thaliana GN=DPBF4 PE=1 SV=1

 Score = 80.1 bits (196), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/179 (36%), Positives = 89/179 (49%), Gaps = 23/179 (12%)

Query: 54  KSVDDVWREIVSGE-------KKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAF 106
           K+VD+VWR+I   +           K+  + E+ TLED L +AG V ++       V   
Sbjct: 76  KTVDEVWRDIQQDKNGNGTSTTTTHKQPTLGEI-TLEDLLLRAGVVTET-------VVPQ 127

Query: 107 ANVTERLSGGVYA--FDQPAAASPFQVEGA-----IVGFGNGVEVVGGRGKRGRVMLEPL 159
            NV    S G +     QP     F          +V  G   +     G R RV  E +
Sbjct: 128 ENVVNIASNGQWVEYHHQPQQQQGFMTYPVCEMQDMVMMGGLSDTPQAPG-RKRVAGEIV 186

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE 218
           +K  ++RQ+RMIKNRESAARSR RKQAY  ELE    RLEEENE+L + K +  +  +E
Sbjct: 187 EKTVERRQKRMIKNRESAARSRARKQAYTHELEIKVSRLEEENEKLRRLKEVEKILPSE 245

Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJN0|ABI5_ARATH Protein ABSCISIC ACID-INSENSITIVE 5 OS=Arabidopsis thaliana GN=ABI5 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 110/272 (40%), Gaps = 104/272 (38%)

Query: 34  NSNLIANEND--QNGAVSAGAM---KSVDDVWREIV------------------------ 64
           N   IANE+   + G+++  A    K+VD+VW EI                         
Sbjct: 130 NKRGIANESSLPRQGSLTLPAPLCRKTVDEVWSEIHRGGGSGNGGDSNGRSSSSNGQNNA 189

Query: 65  -SGEKKEMKEEAIDEMMTLEDFLAKAGAVED----------------------------- 94
            +G +   ++    EM TLEDFL KAG V +                             
Sbjct: 190 QNGGETAARQPTFGEM-TLEDFLVKAGVVREHPTNPKPNPNPNQNQNPSSVIPAAAQQQL 248

Query: 95  ----------SAGGDDMDVKAFANVTERLSGGVYAFDQPAAA------------------ 126
                     S  G  M V   +   +R  GG Y    P  A                  
Sbjct: 249 YGVFQGTGDPSFPGQAMGVGDPSGYAKRTGGGGYQQAPPVQAGVCYGGGVGFGAGGQQMG 308

Query: 127 -----SPFQVEGAIVGFGN--------GVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKN 173
                SP   +G  +G G         GV++ G RG++ RV+  P++K  ++RQRRMIKN
Sbjct: 309 MVGPLSPVSSDG--LGHGQVDNIGGQYGVDMGGLRGRK-RVVDGPVEKVVERRQRRMIKN 365

Query: 174 RESAARSRERKQAYQVELESLAVRLEEENEQL 205
           RESAARSR RKQAY VELE+   +L+EEN QL
Sbjct: 366 RESAARSRARKQAYTVELEAELNQLKEENAQL 397

Participates in ABA-regulated gene expression during seed development and subsequent vegetative stage by acting as the major mediator of ABA repression of growth. Binds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 and Em6 genes promoters. Can also trans-activate its own promoter, suggesting that it is autoregulated. Plays a role in sugar-mediated senescence.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 52/85 (61%), Gaps = 16/85 (18%)

Query: 125 AASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERK 184
           + SP+   G + G  +G                 ++K  ++RQRRMIKNRESAARSR RK
Sbjct: 314 SPSPYMFNGGVRGRKSGT----------------VEKVVERRQRRMIKNRESAARSRARK 357

Query: 185 QAYQVELESLAVRLEEENEQLLKEK 209
           QAY VELE+   +L+EEN++L +++
Sbjct: 358 QAYTVELEAEVAKLKEENDELQRKQ 382

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZDF3|TRAB1_ORYSJ bZIP transcription factor TRAB1 OS=Oryza sativa subsp. japonica GN=TRAB1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 60/116 (51%), Gaps = 32/116 (27%)

Query: 94  DSAGGDDMDVKAFANVTERLSGGVYAFDQPAAASPFQVEGAIVGFGNGVEVVGGRGKRGR 153
           DSAG  D D+ +                 P A  P+  EG I G  +G  V         
Sbjct: 193 DSAGKGDGDLSS-----------------PMAPVPYPFEGVIRGRRSGGNV--------- 226

Query: 154 VMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
                 +K  ++RQRRMIKNRESAARSR RKQAY +ELE+   +L+E+N +L K++
Sbjct: 227 ------EKVVERRQRRMIKNRESAARSRARKQAYTMELEAEVQKLKEQNMELQKKQ 276

Transcription activator that mediates abscisic acid (ABA) signaling. Binds specifically to the ABA-responsive element (ABRE) of the EMP1 and RAB16A gene promoters.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9M7Q3|AI5L6_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 6 OS=Arabidopsis thaliana GN=ABF3 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/52 (61%), Positives = 43/52 (82%)

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKV 210
           L+K  ++RQ+RMIKNRESAARSR RKQAY +ELE+   +L+E NE+L K++V
Sbjct: 368 LEKVIERRQKRMIKNRESAARSRARKQAYTMELEAEIAQLKELNEELQKKQV 419

Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1

 Score = 64.3 bits (155), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 48/68 (70%), Gaps = 3/68 (4%)

Query: 142 VEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEE 201
           V  V  RG+R    LE   K  ++RQRRMIKNRESAARSR RKQAY +ELE+   +L++ 
Sbjct: 333 VPYVLNRGRRSNTGLE---KVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKT 389

Query: 202 NEQLLKEK 209
           N++L K++
Sbjct: 390 NQELQKKQ 397

Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 50/78 (64%), Gaps = 4/78 (5%)

Query: 142 VEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEE 201
           V  V GRG+R    LE   K  ++RQ+RMIKNRESAARSR RKQAY +ELE+    L+  
Sbjct: 293 VPYVFGRGRRSNTGLE---KVVERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLV 349

Query: 202 NEQLLKEKV-IRYVTNAE 218
           N+ L K++  I    N+E
Sbjct: 350 NQDLQKKQAEIMKTHNSE 367

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JK2|FD_ARATH Protein FD OS=Arabidopsis thaliana GN=FD PE=1 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/44 (59%), Positives = 32/44 (72%)

Query: 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
           R +RMIKNRESAARSR RKQAY  ELE     L+ EN +L +++
Sbjct: 217 RHKRMIKNRESAARSRARKQAYTNELELEVAHLQAENARLKRQQ 260

Transcription factor required for the transition to flowering promoted by FT.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
225460656	275	PREDICTED: G-box-binding factor 4 [Vitis	0.909	0.730	0.657	1e-67
224085121	314	predicted protein [Populus trichocarpa]	0.904	0.636	0.614	4e-58
449497099	301	PREDICTED: G-box-binding factor 4-like [	0.904	0.664	0.598	1e-57
449446409	314	PREDICTED: G-box-binding factor 4-like [	0.904	0.636	0.561	1e-55
224062878	305	predicted protein [Populus trichocarpa]	0.904	0.655	0.590	1e-55
21554353	315	unknown [Arabidopsis thaliana]	0.886	0.622	0.556	8e-52
255566614	299	transcription factor, putative [Ricinus	0.945	0.698	0.575	1e-51
15240086	315	basic leucine zipper transcription facto	0.886	0.622	0.552	1e-51
207999344	314	basic-leucine zipper [Humulus lupulus]	0.927	0.652	0.6	2e-50
297791457	308	hypothetical protein ARALYDRAFT_494588 [	0.900	0.646	0.532	2e-49

>gi|225460656|ref|XP_002266826.1| PREDICTED: G-box-binding factor 4 [Vitis vinifera]

 Score =  261 bits (667), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 142/216 (65%), Positives = 173/216 (80%), Gaps = 15/216 (6%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVW 60
           MTVDG+LRNVY  + A  +++TL+DA+ITLVD+ +  +A   +  GA +A   K+VDDVW
Sbjct: 38  MTVDGLLRNVY--SAAPPSESTLVDAEITLVDSGTGAMA---ELEGAPAA---KTVDDVW 89

Query: 61  REIVSGE--KKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVY 118
           REIV+G   ++E KEE  D+MMTLEDFLAKAGAVE+   G+D DVK    VT+RLSGG++
Sbjct: 90  REIVAGGGGRRECKEEVEDDMMTLEDFLAKAGAVEEE--GEDRDVK-VPLVTQRLSGGIF 146

Query: 119 AFDQ--PAAASPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRES 176
           AFD   P+  +P QVEG+++GFGNG+E+VGGRGKR   +LEPLDKAAQQ+QRRMIKNRES
Sbjct: 147 AFDPVPPSPITPAQVEGSVIGFGNGMEIVGGRGKRRAPVLEPLDKAAQQKQRRMIKNRES 206

Query: 177 AARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212
           AARSRERKQAYQVELES AVRLEEENEQLLKEK  R
Sbjct: 207 AARSRERKQAYQVELESSAVRLEEENEQLLKEKAER 242

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085121|ref|XP_002307500.1| predicted protein [Populus trichocarpa] gi|222856949|gb|EEE94496.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 142/231 (61%), Positives = 160/231 (69%), Gaps = 31/231 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGA-------VSAGAM 53
           MTVDGILRNVY    + +T++TLL AQITL++T +       + NG        V     
Sbjct: 57  MTVDGILRNVY---ASPSTESTLLGAQITLMETPNPPPPPPIETNGTDNQDMSVVIPQET 113

Query: 54  KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERL 113
           K+ DD+WREIV+G +KEMK+E  DEMMTLEDFLAKAGAV D  G D  DVK      ERL
Sbjct: 114 KTADDIWREIVAG-RKEMKDEP-DEMMTLEDFLAKAGAV-DVVGEDGDDVKMPQ--PERL 168

Query: 114 SGGVYAFDQPAAASPFQV----EGAIVGFGNGVEV-----------VGGRGKRGRVMLEP 158
           SGG+YAFD P   S FQV    EG+IVGFGNGVEV            G   +   V++EP
Sbjct: 169 SGGLYAFD-PVPPSAFQVLDKVEGSIVGFGNGVEVELVAGSGGGGGGGRGKRGRTVVMEP 227

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
           LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK
Sbjct: 228 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497099|ref|XP_004160311.1| PREDICTED: G-box-binding factor 4-like [Cucumis sativus]

 Score =  228 bits (581), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 134/224 (59%), Positives = 164/224 (73%), Gaps = 24/224 (10%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD---TNSNLIANENDQNGAVSAGAMKSVD 57
           MTVDG+L N +++    T  + LLDAQITLVD   TNS+ + + N  + +V A   K+VD
Sbjct: 57  MTVDGLLPNAFDSN--PTESSILLDAQITLVDPTTTNSSAVIDSNHNSSSV-APPPKTVD 113

Query: 58  DVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGV 117
           DVWREIVSGE+KE+KEE  +E++TLEDFL K+GAV         DVK F   TERLSGG+
Sbjct: 114 DVWREIVSGERKELKEEVANEIITLEDFLMKSGAVPVE------DVK-FPQ-TERLSGGI 165

Query: 118 YAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGRVM-----LEPLDKAAQQRQR 168
           ++FD P  ++ FQ    +EG+I+GF NGV+++G  G  GR       LEPLDKAA+QRQR
Sbjct: 166 FSFD-PIPSTTFQALDKIEGSIIGFANGVDLIGSGGSGGRGKRGRAALEPLDKAAEQRQR 224

Query: 169 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212
           RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL+EK  R
Sbjct: 225 RMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLREKAER 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446409|ref|XP_004140964.1| PREDICTED: G-box-binding factor 4-like [Cucumis sativus]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 133/237 (56%), Positives = 164/237 (69%), Gaps = 37/237 (15%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDT----------------NSNLIANENDQ 44
           MTVDG+L N +++    T  + LLDAQITLVD+                NS+ + + N  
Sbjct: 57  MTVDGLLPNAFDSNP--TESSILLDAQITLVDSPNPSSLHIDTTTPTTTNSSAVIDSNHN 114

Query: 45  NGAVSAGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVK 104
           + +V A   K+VDDVWREIVSGE+KE+KEE  +E++TLEDFL K+GAV         DVK
Sbjct: 115 SSSV-APPPKTVDDVWREIVSGERKELKEEVANEIITLEDFLMKSGAVPVE------DVK 167

Query: 105 AFANVTERLSGGVYAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGRVM----- 155
            F   TERLSGG+++FD P  ++ FQ    +EG+I+GF NGV+++G  G  GR       
Sbjct: 168 -FPQ-TERLSGGIFSFD-PIPSTTFQALDKIEGSIIGFANGVDLIGSGGSGGRGKRGRAA 224

Query: 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212
           LEPLDKAA+QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL+EK  R
Sbjct: 225 LEPLDKAAEQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLREKAER 281

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062878|ref|XP_002300915.1| predicted protein [Populus trichocarpa] gi|222842641|gb|EEE80188.1| predicted protein [Populus trichocarpa]

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 137/232 (59%), Positives = 159/232 (68%), Gaps = 32/232 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANE-------NDQNGAVSAGAM 53
           MTVDGILR+VY    + +T++TLLDAQITL+++  +L   +       +     +     
Sbjct: 56  MTVDGILRSVY---ASPSTESTLLDAQITLMESPDHLPHPQIETDDTDDQDMSDIIPQEN 112

Query: 54  KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERL 113
           K+ DD+WREIV G +KEMK+E  DEMMTLEDFLAKAGAV D  G D  +VK      ERL
Sbjct: 113 KTADDIWREIVVG-RKEMKDEP-DEMMTLEDFLAKAGAV-DVVGEDGDEVKMPP--PERL 167

Query: 114 SGGVYAFDQPAAASPFQV----EGAIVGFGNGVEV------------VGGRGKRGRVMLE 157
           SGG+YAFD    +S FQV    EG+IVGFGNGVEV             G   +   V +E
Sbjct: 168 SGGLYAFDSLPPSS-FQVLDKEEGSIVGFGNGVEVELVAGSGGGGSGGGRGKRGRGVAME 226

Query: 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
           PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK
Sbjct: 227 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 278

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554353|gb|AAM63460.1| unknown [Arabidopsis thaliana]

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 128/230 (55%), Positives = 156/230 (67%), Gaps = 34/230 (14%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD-----------TNSNLIANENDQNGAVS 49
           MTV+GIL + + +   + T+++LLDA I L+D           T S+++   +   G  +
Sbjct: 59  MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVV---DHGGGTET 115

Query: 50  AGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKA 105
               KSVD+VWRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK 
Sbjct: 116 TRGGKSVDEVWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI 174

Query: 106 FANVTERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGG--RGKRGRVMLEP 158
              VT       Y FD  A   +PFQ    VEG+IV FGNG++V GG  RGKR RVM+EP
Sbjct: 175 --PVTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEP 226

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           LDKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE
Sbjct: 227 LDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKE 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566614|ref|XP_002524291.1| transcription factor, putative [Ricinus communis] gi|223536382|gb|EEF38031.1| transcription factor, putative [Ricinus communis]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 133/231 (57%), Positives = 157/231 (67%), Gaps = 22/231 (9%)

Query: 1   MTVDGILRN-------VYNTTTA--STTDATLLDAQITLVDTNSNLIANENDQNGAVSAG 51
           MTVDGI+R+       +Y+T     +T D+TLLDAQITL+D  +     + + + A  + 
Sbjct: 60  MTVDGIIRSSNNNNSNIYSTPAPIPTTADSTLLDAQITLIDNPTPPPPPQMETSTAAISQ 119

Query: 52  AMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTE 111
           + K+VDDVWREIVSG +KEMKEE  DEMMTLEDFLAKAGAV+     D  D         
Sbjct: 120 SNKTVDDVWREIVSG-RKEMKEEQPDEMMTLEDFLAKAGAVDVVEDEDLDDEVKMPLPLP 178

Query: 112 RLS--GGVYAFDQPA----AASPFQ----VEGAIVGFGNGVEVVGGRGKRG--RVMLEPL 159
                GG+YAFD P     A++ FQ    VEG+IV FGNG    GG   +    V++EPL
Sbjct: 179 SPLSSGGMYAFDSPVSVPQASNAFQILDKVEGSIVAFGNGGNTGGGGRGKRGRSVVMEPL 238

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKV 210
           DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQ+LKEKV
Sbjct: 239 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQMLKEKV 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240086|ref|NP_199221.1| basic leucine zipper transcription factor [Arabidopsis thaliana] gi|9758567|dbj|BAB09068.1| unnamed protein product [Arabidopsis thaliana] gi|18175622|gb|AAL59898.1| unknown protein [Arabidopsis thaliana] gi|20465651|gb|AAM20294.1| unknown protein [Arabidopsis thaliana] gi|28317385|tpe|CAD29862.1| TPA: basic leucine zipper transcription factor [Arabidopsis thaliana] gi|332007673|gb|AED95056.1| basic leucine zipper transcription factor [Arabidopsis thaliana]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 156/230 (67%), Gaps = 34/230 (14%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD-----------TNSNLIANENDQNGAVS 49
           MTV+GIL + + +   + T+++LLDA I L+D           T S+++   +   G  +
Sbjct: 59  MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVV---DHGGGTET 115

Query: 50  AGAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKA 105
               KSVD++WRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK 
Sbjct: 116 TRGGKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI 174

Query: 106 FANVTERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGG--RGKRGRVMLEP 158
              VT       Y FD  A   +PFQ    VEG+IV FGNG++V GG  RGKR RVM+EP
Sbjct: 175 --PVTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEP 226

Query: 159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           LDKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE
Sbjct: 227 LDKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKE 276

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|207999344|emb|CAQ53097.1| basic-leucine zipper [Humulus lupulus]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 138/230 (60%), Positives = 164/230 (71%), Gaps = 25/230 (10%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVDTNS-----NLIANENDQN-GAV-SAGAM 53
           MTVDG LRNVY+ T A+  ++TLLDAQITL+D               D N G++ S+ A 
Sbjct: 59  MTVDGFLRNVYDATPAA--ESTLLDAQITLIDPTPIASVSAAAVATGDLNSGSIGSSSAP 116

Query: 54  KSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFL-AKAGAVEDSAGGDDMDVKAF-ANVTE 111
           K+VD+VWREI+SG++KE KEE  D +MTLEDFL AK G     A  ++ DVK+  A +TE
Sbjct: 117 KTVDEVWREIISGDRKECKEEEQDMVMTLEDFLLAKTGI----ASVEEEDVKSLPAPLTE 172

Query: 112 RLSGGVYAFDQPAAASPFQ----VEGAIVGFGNGVEVVGGRGKRGRVM-----LEPLDKA 162
            LS G+++FD     SP Q    VEG+I+GFGNGVEV+GG G  GR       LEPLDKA
Sbjct: 173 SLSSGLFSFDS-IPPSPLQALDNVEGSIIGFGNGVEVIGGGGAGGRGKRGRNVLEPLDKA 231

Query: 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR 212
           AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEEN++LLKEK  R
Sbjct: 232 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENDRLLKEKAER 281

Source: Humulus lupulus

Species: Humulus lupulus

Genus: Humulus

Family: Cannabaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791457|ref|XP_002863613.1| hypothetical protein ARALYDRAFT_494588 [Arabidopsis lyrata subsp. lyrata] gi|297309448|gb|EFH39872.1| hypothetical protein ARALYDRAFT_494588 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/229 (53%), Positives = 153/229 (66%), Gaps = 30/229 (13%)

Query: 1   MTVDGILRNVYNTTTASTTDATLLDAQITLVD----------TNSNLIANENDQNGAVSA 50
           MTV+GIL + + +   + T+++LLDA ITL+D          T S+++  ++D  G  + 
Sbjct: 51  MTVEGILHDTFASDPPAPTESSLLDASITLMDASPAPMEITTTVSDVV--DHDGGGTETT 108

Query: 51  GAMKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVT 110
              KSVD+VWRE+VSG  K MKEE  +E+MTLEDFLAKA   +++A  +D+DVK      
Sbjct: 109 RGGKSVDEVWREMVSGVGKGMKEETQEEIMTLEDFLAKAAVEDETATAEDLDVKIPPTTN 168

Query: 111 ERLSGGVYAFDQPAAA-SPFQ----VEGAIVGFGNGVEVVGGRG------KRGRVMLEPL 159
                  Y FD  A   +PFQ    VEG+IV FGNG++V GG G      KR RVM+EPL
Sbjct: 169 -------YGFDYSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGGSGGVRGKRARVMVEPL 221

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           DKAA QRQRRMIKNRESAARSRERKQAYQVELE+LA +LEEENE L KE
Sbjct: 222 DKAAAQRQRRMIKNRESAARSRERKQAYQVELEALAAKLEEENELLSKE 270

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2172507	315	AT5G44080 [Arabidopsis thalian	0.850	0.596	0.458	1.6e-31
TAIR|locus:2024224	270	GBF4 "G-box binding factor 4"	0.633	0.518	0.543	2.1e-29
UNIPROTKB|Q8RZ35	388	P0489B03.11 "Putative ABA resp	0.153	0.087	0.764	4e-14
TAIR|locus:2049425	442	ABI5 "ABA INSENSITIVE 5" [Arab	0.162	0.081	0.75	1.3e-12
TAIR|locus:2103665	297	AREB3 "ABA-responsive element	0.162	0.121	0.694	3.7e-12
UNIPROTKB|Q6ZDF3	318	TRAB1 "bZIP transcription fact	0.158	0.110	0.714	1.5e-11
TAIR|locus:2118969	454	ABF3 "AT4G34000" [Arabidopsis	0.158	0.077	0.714	2.3e-11
TAIR|locus:2063275	262	EEL "AT2G41070" [Arabidopsis t	0.162	0.137	0.694	5.9e-10
TAIR|locus:2076018	331	DPBF2 "AT3G44460" [Arabidopsis	0.158	0.105	0.714	1.7e-09

TAIR|locus:2172507 AT5G44080 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 99/216 (45%), Positives = 121/216 (56%)

Query:     1 MTVDGILRNVYNXXXXXXXXXXXXXXQITLVDTN------SNLIANEN-DQNGAV-SAGA 52
             MTV+GIL + +                I L+D +      +   A++  D  G   +   
Sbjct:    59 MTVEGILHDTFASDPPAPTESSLLDASINLMDASPAPMEITTTTASDVVDHGGGTETTRG 118

Query:    53 MKSVDDVWREIVSGEKKEMKEEAIDEMMTLEDFLAKAGAVED----SAGGDDMDVKAFAN 108
              KSVD++WRE+VSGE K MKEE  +E+MTLEDFLAKA AVED    +A  +D+DVK    
Sbjct:   119 GKSVDEIWREMVSGEGKGMKEETSEEIMTLEDFLAKA-AVEDETAVTASAEDLDVKI--P 175

Query:   109 VTERLSGGVYAFDQPAAA-SPFQ----VEGAIXXXXXXXXXXXXXXXXXXX--MLEPLDK 161
             VT       Y FD  A   +PFQ    VEG+I                     M+EPLDK
Sbjct:   176 VTN------YGFDHSAPPHNPFQMIDKVEGSIVAFGNGLDVYGGGARGKRARVMVEPLDK 229

Query:   162 AAQQRQRRMIKNRESAARSRERKQAYQVELESLAVR 197
             AA QRQRRMIKNRESAARSRERKQAYQVELE+LA +
Sbjct:   230 AAAQRQRRMIKNRESAARSRERKQAYQVELEALAAK 265

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:2024224 GBF4 "G-box binding factor 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 87/160 (54%), Positives = 105/160 (65%)

Query:    43 DQNGAVSAGAMKSVDDVWREIVSGEKKE--MKEEAIDEMMTLEDFLAKAGAVEDSAGGDD 100
             D+N +V+ G  KSVDDVW+EIVSGE+K   MKEE  +++MTLEDFLAKA    D    D+
Sbjct:    77 DRN-SVNNG--KSVDDVWKEIVSGEQKTIMMKEEEPEDIMTLEDFLAKAEM--DEGASDE 131

Query:   101 MDVKAFANVTERLSG-GVYAFDQPAAA-SPFQ-VEGAIXXXXXXXXXXXXXXXXXXXMLE 157
             +DVK     TERL+  G Y FD P    S FQ VEG++                   M+E
Sbjct:   132 IDVKI---PTERLNNDGSYTFDFPMQRHSSFQMVEGSMGGGVTRGKRGRV-------MME 181

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVR 197
              +DKAA QRQ+RMIKNRESAARSRERKQAYQVELE+LA +
Sbjct:   182 AMDKAAAQRQKRMIKNRESAARSRERKQAYQVELETLAAK 221

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA;IDA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q8RZ35 P0489B03.11 "Putative ABA response element binding factor" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 129 (50.5 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
 Identities = 26/34 (76%), Positives = 30/34 (88%)

Query:   160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             +K  ++RQRRMIKNRESAARSR RKQAY VELE+
Sbjct:   299 EKTVERRQRRMIKNRESAARSRARKQAYTVELEA 332

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2049425 ABI5 "ABA INSENSITIVE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             P++K  ++RQRRMIKNRESAARSR RKQAY VELE+
Sbjct:   350 PVEKVVERRQRRMIKNRESAARSRARKQAYTVELEA 385

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0048316 "seed development" evidence=IMP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0010182 "sugar mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010200 "response to chitin" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009845 "seed germination" evidence=IEP;RCA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009686 "gibberellin biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0009933 "meristem structural organization" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0019915 "lipid storage" evidence=RCA

GO:0050826 "response to freezing" evidence=RCA

TAIR|locus:2103665 AREB3 "ABA-responsive element binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 3.7e-12, Sum P(2) = 3.7e-12
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query:   157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE
Sbjct:   219 EVVEKTVERRQKRMIKNRESAARSRARKQAYTHELE 254

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|Q6ZDF3 TRAB1 "bZIP transcription factor TRAB1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 127 (49.8 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 25/35 (71%), Positives = 31/35 (88%)

Query:   159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             ++K  ++RQRRMIKNRESAARSR RKQAY +ELE+
Sbjct:   226 VEKVVERRQRRMIKNRESAARSRARKQAYTMELEA 260

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2118969 ABF3 "AT4G34000" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 25/35 (71%), Positives = 31/35 (88%)

Query:   159 LDKAAQQRQRRMIKNRESAARSRERKQAYQVELES 193
             L+K  ++RQ+RMIKNRESAARSR RKQAY +ELE+
Sbjct:   368 LEKVIERRQKRMIKNRESAARSRARKQAYTMELEA 402

GO:0003677 "DNA binding" evidence=ISS;IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0000303 "response to superoxide" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0008219 "cell death" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

TAIR|locus:2063275 EEL "AT2G41070" [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
 Identities = 25/36 (69%), Positives = 30/36 (83%)

Query:   157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             E ++K  ++RQ+RMIKNRESAARSR RKQAY  ELE
Sbjct:   184 EIVEKTVERRQKRMIKNRESAARSRARKQAYTHELE 219

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA;TAS

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2076018 DPBF2 "AT3G44460" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
 Identities = 25/35 (71%), Positives = 29/35 (82%)

Query:   158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELE 192
             P +   ++RQRRMIKNRESAARSR R+QAY VELE
Sbjct:   242 PPEILMERRQRRMIKNRESAARSRARRQAYTVELE 276

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0033613 "activating transcription factor binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA;IDA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
smart00338	65	smart00338, BRLZ, basic region leucin zipper	3e-12
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	2e-10
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	1e-07
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	0.003

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 59.5 bits (145), Expect = 3e-12
 Identities = 25/45 (55%), Positives = 33/45 (73%)

Query: 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           ++R+RR  +NRE+A RSRERK+A   ELE    +LE ENE+L KE
Sbjct: 4   EKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKE 48

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           +R+RR  KNRE+A RSR RK+AY  ELE     LE EN+ L  E
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSE 48

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
            + R RR  +N E+A RSRE+K+  + ELE     LEEEN QL ++
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQK 47

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 18/43 (41%), Positives = 22/43 (51%)

Query: 166 RQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           R R+  +NRE+A RSR RK     +LE     L  EN  L  E
Sbjct: 3   RARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDE 45

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
smart00338	65	BRLZ basic region leucin zipper.	99.37
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.3
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.25
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.17
KOG3584	348	consensus cAMP response element binding protein an	99.14
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	99.12
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	98.88
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.07
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.51
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.5
KOG4571	294	consensus Activating transcription factor 4 [Trans	96.95
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	96.32
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	95.75
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	88.89
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	86.55
PRK00888	105	ftsB cell division protein FtsB; Reviewed	85.05
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	82.54
PRK10884	206	SH3 domain-containing protein; Provisional	81.96
PHA03162	135	hypothetical protein; Provisional	81.43
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	81.22
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	81.21
PHA03155	115	hypothetical protein; Provisional	80.71

>smart00338 BRLZ basic region leucin zipper

Probab=99.37  E-value=2.8e-12  Score=91.84  Aligned_cols=55  Identities=45%  Similarity=0.451  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      ++|+.+|+++||+||++||.||++|+.+||.+|..|+.+|..|+.++..|..++.
T Consensus         3 ~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~   57 (65)
T smart00338        3 DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELE   57 (65)
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999999999999999999988775

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.30  E-value=1.1e-11  Score=88.60  Aligned_cols=56  Identities=43%  Similarity=0.479  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      ..++.+|+++||+||++||.||+.|+.+||.+|..|+.+|..|+.++..|..++..
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~   58 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQS   58 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999887753

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.25  E-value=1.3e-11  Score=119.63  Aligned_cols=60  Identities=43%  Similarity=0.464  Sum_probs=52.8

Q ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      .+|.+..||+.|||||||||..||+|||+|+..||.++..|..||+.|+++...|+.+.+
T Consensus       274 ~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~  333 (655)
T KOG4343|consen  274 GSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLD  333 (655)
T ss_pred             ccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            578889999999999999999999999999999999999888888887777777765543

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.17  E-value=1.6e-10  Score=80.51  Aligned_cols=52  Identities=46%  Similarity=0.537  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT  215 (221)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~  215 (221)
                      ++++.+|. +||++|++||.||++|+.+|+.+|..|+.+|..|..++..|..+
T Consensus         3 ~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~E   54 (54)
T PF07716_consen    3 EEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLERE   54 (54)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            46777887 99999999999999999999999999999999999999998764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=99.14  E-value=6.5e-11  Score=108.10  Aligned_cols=57  Identities=32%  Similarity=0.459  Sum_probs=52.2

Q ss_pred             CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY  213 (221)
Q Consensus       157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~  213 (221)
                      ...|+...||+-|+.||||.|+.||+|||+|+.|||.+|..|+..|..|-.++..|.
T Consensus       283 ~~aee~trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLK  339 (348)
T KOG3584|consen  283 QGAEEATRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLK  339 (348)
T ss_pred             ccchhhhhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            346788899999999999999999999999999999999999999999988887665

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=99.12  E-value=5.7e-11  Score=113.56  Aligned_cols=61  Identities=31%  Similarity=0.372  Sum_probs=57.1

Q ss_pred             CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      ...|+...||.||+|||.+||+.||+|||+|++.||.+|.....||.+|++++++|...|-
T Consensus       243 TKaEEriLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~~N~  303 (472)
T KOG0709|consen  243 TKAEERILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELELSNR  303 (472)
T ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhhccH
Confidence            3467889999999999999999999999999999999999999999999999999998774

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=98.88  E-value=4.5e-09  Score=94.11  Aligned_cols=69  Identities=38%  Similarity=0.382  Sum_probs=59.5

Q ss_pred             CCCcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          148 RGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       148 ~~~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      .++|||...+++.- ++|-+||++|||..|+.+|.|||+.+.++|.++..|.+||+.|+.+.+.|+..|.
T Consensus        53 ~~~rKr~RL~HLS~-EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~  121 (292)
T KOG4005|consen   53 QPKRKRRRLDHLSW-EEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINE  121 (292)
T ss_pred             chHHHHHhhcccCH-HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677766666643 6899999999999999999999999999999999999999999988888876653

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.07  E-value=2.1e-07  Score=71.20  Aligned_cols=59  Identities=32%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTN  216 (221)
Q Consensus       158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~  216 (221)
                      ..+....|..||..|||.+|++||.||..++.+||.++..|+.+...|..++..+..+.
T Consensus        23 ~~q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   23 EEQIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556779999999999999999999999999999999887776666666665555443

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.51  E-value=0.00034  Score=63.13  Aligned_cols=65  Identities=23%  Similarity=0.300  Sum_probs=54.3

Q ss_pred             cccCCcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          153 RVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       153 r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      +..-.+.+.+..+-..|..||=+++++||.+.|.-.++...+|..|+.||+.|+.++++|+.++.
T Consensus       182 ~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~  246 (269)
T KOG3119|consen  182 SKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELA  246 (269)
T ss_pred             ccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334555556666666677999999999999999999999999999999999999999998764

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.50  E-value=0.00033  Score=63.71  Aligned_cols=54  Identities=28%  Similarity=0.260  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      .|-.|...+||+.|.+||.||-.++..||.+|..|+-+|..|-..+..|....+
T Consensus       205 ~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~  258 (279)
T KOG0837|consen  205 IKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVA  258 (279)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            344455679999999999999999999999999888877776655555554443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=96.95  E-value=0.0033  Score=57.94  Aligned_cols=54  Identities=26%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             HHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          164 QQRQRRM-IKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       164 ~rr~rR~-ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      +++.+|+ +.|...|.|=|.||++-.+.|+.+...|+.+|++||.+..+|..+..
T Consensus       225 ~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerEI~  279 (294)
T KOG4571|consen  225 EKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELEREIR  279 (294)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444443 45666799999999999999999999999999999999999988764

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=96.32  E-value=0.028  Score=46.68  Aligned_cols=58  Identities=28%  Similarity=0.318  Sum_probs=45.0

Q ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELES-------LAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~-------~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      +....|..||-.|||=-|+-||-|+=..-.+||.       +|.+|.+||.++..++..+...+.
T Consensus        48 EVvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e  112 (135)
T KOG4196|consen   48 EVVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYE  112 (135)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4446788888999999999999999888888885       566777777777777766666554

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=95.75  E-value=0.01  Score=59.40  Aligned_cols=51  Identities=33%  Similarity=0.351  Sum_probs=43.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .|-.||.=|||.+|+++|+||=..|..||..|..|+.|-++|.++.-++.+
T Consensus       489 IrDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~  539 (604)
T KOG3863|consen  489 IRDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS  539 (604)
T ss_pred             hhccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345678889999999999999999999999999999998888877655543

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=88.89  E-value=0.017  Score=54.67  Aligned_cols=57  Identities=21%  Similarity=0.142  Sum_probs=49.4

Q ss_pred             cHHHHHHHHHHHHhhHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 027587          160 DKAAQQRQRRMIKNRESAAR---SRERKQAYQVELESLAVRLE-EENEQLLKEKVIRYVTN  216 (221)
Q Consensus       160 e~~~~rr~rR~ikNReSA~r---SR~RKkay~~eLE~~v~~L~-~EN~~L~~~~e~l~~~~  216 (221)
                      .+.+.++..|+.+|+..|..   +|.||+.|+.+|+.+|+.|+ .+|..|..++..|.++.
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqne~  209 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQNEA  209 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCccccccccHH
Confidence            45579999999999999999   99999999999999999999 88887777776666543

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=86.55  E-value=0.12  Score=49.13  Aligned_cols=55  Identities=33%  Similarity=0.442  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhh
Q 027587          163 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLL-KEKVIRYVTNA  217 (221)
Q Consensus       163 ~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~-~~~e~l~~~~~  217 (221)
                      ++++++=+++||.+|-++|.|||..+..|+.+...+..+|..|. .+++.|..++.
T Consensus       283 ~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~~~~~~~l~~~~~  338 (395)
T KOG1414|consen  283 DERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLLLNEVELLRNEVK  338 (395)
T ss_pred             hhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccccchhhHHHhHHh
Confidence            45667778899999999999999999999999999999999998 66777766554

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=85.05  E-value=2.6  Score=33.17  Aligned_cols=33  Identities=18%  Similarity=0.054  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          182 ERKQAYQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      ...++.+.+++.++..|+.+|..|+++++.|+.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~   62 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG   62 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            455667788899999999999999999988875

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=82.54  E-value=4.6  Score=28.71  Aligned_cols=31  Identities=26%  Similarity=0.155  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          182 ERKQAYQVELESLAVRLEEENEQLLKEKVIR  212 (221)
Q Consensus       182 ~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l  212 (221)
                      ...+..+..|+.++..|+.+|..|+.+++.|
T Consensus        20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   20 YQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3455667899999999999999999999988

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>PRK10884 SH3 domain-containing protein; Provisional

Probab=81.96  E-value=11  Score=33.24  Aligned_cols=36  Identities=19%  Similarity=0.204  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          183 RKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       183 RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      ..+.-+..++..+..|+++|.+|+++++.++.++.+
T Consensus       122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884        122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444556666777888888888888777776654

>PHA03162 hypothetical protein; Provisional

Probab=81.43  E-value=1  Score=37.59  Aligned_cols=28  Identities=25%  Similarity=0.255  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          183 RKQAYQVELESLAVRLEEENEQLLKEKV  210 (221)
Q Consensus       183 RKkay~~eLE~~v~~L~~EN~~L~~~~e  210 (221)
                      +++.-+++|+.++.+|+-||..|++++.
T Consensus        10 k~~~tmEeLaaeL~kLqmENK~LKkkl~   37 (135)
T PHA03162         10 KAQPTMEDLAAEIAKLQLENKALKKKIK   37 (135)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566688999999999999999999983

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=81.22  E-value=16  Score=25.65  Aligned_cols=56  Identities=32%  Similarity=0.262  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587          161 KAAQQRQRRMIKNRESAARSRERKQ---AYQVELESLAVRLEEENEQLLKEKVIRYVTN  216 (221)
Q Consensus       161 ~~~~rr~rR~ikNReSA~rSR~RKk---ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~  216 (221)
                      +...|+.+=.+.-|.+-.|-...-+   ..+..|+.+...|..++..|..++..|..+|
T Consensus         5 k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen    5 KRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4456666666666666666555443   4567899999999999999999999998876

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=81.21  E-value=2.9  Score=30.46  Aligned_cols=21  Identities=43%  Similarity=0.433  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLK  207 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~  207 (221)
                      .+.+|+.++.+|+.||.-|+.
T Consensus        22 ~I~eL~~~n~~Le~EN~~Lk~   42 (59)
T PF01166_consen   22 QIAELEERNSQLEEENNLLKQ   42 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            345566666666666655554

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PHA03155 hypothetical protein; Provisional

Probab=80.71  E-value=2.2  Score=34.77  Aligned_cols=24  Identities=33%  Similarity=0.268  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLKEKV  210 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e  210 (221)
                      -+++|+.++.+|+-||..|++++-
T Consensus         9 tvEeLaaeL~kL~~ENK~LKkkl~   32 (115)
T PHA03155          9 DVEELEKELQKLKIENKALKKKLL   32 (115)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	4e-14
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	1e-10
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	4e-09
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-08
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	4e-08
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	2e-07
2wt7_B	90	Transcription factor MAFB; transcription, transcri	2e-06
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	2e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	7e-05
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	2e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           +R+ R++KNRE+A  SR +K+ Y   LE+    LE +N+ L++E
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEE 44

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 54.7 bits (132), Expect = 1e-10
 Identities = 15/44 (34%), Positives = 27/44 (61%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           +R++ + +NR +A+RSR++++ +   LE  A  L   N QL  E
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSE 44

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           + +R+ ++NR +A++SR+RK      LE     L+ +N +L   
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELAST 44

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 49.0 bits (117), Expect = 1e-08
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           ++R+ R  +N+ +AA+ R R++     L++   +LE+E   L  E
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTE 45

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 47.7 bits (114), Expect = 4e-08
 Identities = 14/44 (31%), Positives = 27/44 (61%)

Query: 165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           ++ ++M +N+ +A R R++K+A Q  L      LE++NE L + 
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKER 45

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 17/60 (28%), Positives = 29/60 (48%)

Query: 150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
            +    L   +    +++RR +KNR  AA  R ++   + ELE     L++E E+L  E 
Sbjct: 22  NQHLRGLSKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASEN 81

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 14/54 (25%), Positives = 27/54 (50%)

Query: 156 LEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEK 209
               +    +++RR +KNR  A   R ++   +  LE+   +L ++ EQL +E 
Sbjct: 18  FTKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEV 71

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 13/52 (25%), Positives = 29/52 (55%)

Query: 157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           + +DK + + + R  +N  +  +SR++ +   +E +   + L  ENE+L K+
Sbjct: 7   KTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 7e-06
 Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 67/206 (32%)

Query: 6   ILRNVYNTTTASTTDATLLDAQITLVDTNSNLIANENDQNGAVSAGAMKSVDDVWREIVS 65
           +L NV N       +A  L  +I L+ T    + +       +SA            I  
Sbjct: 249 VLLNVQNAKAW---NAFNLSCKI-LLTTRFKQVTD------FLSAATTT-------HISL 291

Query: 66  GEKKEMKEEAIDEMMTLEDFLAKAGAVEDSAGGDDMDVKAFANVTERLSGGVYAFDQPAA 125
                      DE+ +L                                      D P  
Sbjct: 292 DHHSMTLTP--DEVKSL-----------------------LLKYL-----DCRPQDLPRE 321

Query: 126 A---SPFQVEGAIVGFGNGVEVVGGRGKRGRVMLEPLDKAAQQRQRRMIKNRESAARSRE 182
               +P ++  +I+      E +    + G    +        +   +I++  +     E
Sbjct: 322 VLTTNPRRL--SIIA-----ESI----RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 183 RKQAYQVELESLAVRLEEEN--EQLL 206
            ++ +    + L+V     +    LL
Sbjct: 371 YRKMF----DRLSVFPPSAHIPTILL 392

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D Length = 63

 Score = 40.2 bits (94), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 4/55 (7%)

Query: 154 VMLEPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           ++ E  D AA +R R    N E+A RSR RK     +LE     L  +N  L  E
Sbjct: 2   IVPESSDPAALKRAR----NTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENE 52

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 39.1 bits (91), Expect = 7e-05
 Identities = 13/51 (25%), Positives = 28/51 (54%)

Query: 158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
            +DK + + + R  +N  +  +SR++ +   +E +   + L  ENE+L K+
Sbjct: 8   TVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKK 58

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKE 208
           +   +   +R  +NR +    R+RK+ +   LE+  V L+E +     E
Sbjct: 3   NSDQEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLE 51

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.66
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.41
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.35
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.3
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.27
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	98.98
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.76
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.69
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	98.49
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.41
2wt7_B	90	Transcription factor MAFB; transcription, transcri	97.94
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	97.2
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	95.5
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	92.85
3m48_A	33	General control protein GCN4; leucine zipper, synt	91.59
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	91.54
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	91.51
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	90.25
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	89.01
1nkp_B	83	MAX protein, MYC proto-oncogene protein; transcrip	88.87
1am9_A	82	Srebp-1A, protein (sterol regulatory element bindi	87.74
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	87.67
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	87.47
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	86.48
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	86.47
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	85.84
1nlw_A	80	MAD protein, MAX dimerizer; transcription factor,	85.24
1fmh_A	33	General control protein GCN4; coiled coil, leucine	84.82
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	84.62
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.56
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	83.63
1uo4_A	34	General control protein GCN4; four helix bundle, c	83.5
2bni_A	34	General control protein GCN4; four helix bundle, a	83.05
2hy6_A	34	General control protein GCN4; protein design, para	82.87
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.72
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	81.35

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.66  E-value=1.7e-16  Score=111.04  Aligned_cols=54  Identities=33%  Similarity=0.447  Sum_probs=51.3

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      ||++||++||+||++||.|||+|+++||.+|..|+.||..|+.++..|...+.+
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~~   54 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDLYSH   54 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            588999999999999999999999999999999999999999999999987754

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.41  E-value=6.9e-13  Score=94.53  Aligned_cols=54  Identities=24%  Similarity=0.315  Sum_probs=51.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          164 QQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       164 ~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      +||++|+++||++|++||.||++|+.+|+.+|..|+.+|..|+.++..|..+..
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~   54 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEKE   54 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999999999999999999999999999999999999999987764

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.35  E-value=2.3e-12  Score=91.04  Aligned_cols=53  Identities=30%  Similarity=0.372  Sum_probs=50.8

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      ||++|+++||++|++||.||++|+.+||.+|..|+.+|..|..++..|..++.
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~   53 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA   53 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999998875

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.30  E-value=5.2e-12  Score=90.43  Aligned_cols=50  Identities=28%  Similarity=0.187  Sum_probs=44.1

Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          168 RRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       168 rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      ++..+||+||++||.||++|+.+||.+|..|+.+|..|..+++.|.....
T Consensus        12 ~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           12 LKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33345999999999999999999999999999999999999999987654

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.27  E-value=1.4e-11  Score=87.33  Aligned_cols=53  Identities=26%  Similarity=0.324  Sum_probs=49.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      |+.+|..+||++|++||.||++|+.+||.+|..|+.+|..|..++..|..+++
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~   53 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA   53 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35678888999999999999999999999999999999999999999998875

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=98.98  E-value=9.7e-10  Score=78.39  Aligned_cols=53  Identities=26%  Similarity=0.290  Sum_probs=45.5

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          165 QRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       165 rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      |+++++.+||.+|+|+|.||++++.+|+.++..|+.+|..|+.++..|..++.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~   54 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQ   54 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999999999998875

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.76  E-value=2.9e-08  Score=73.88  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      |+..+.-..|..+|.++|++||.+++....+++.+|..|+.||..|+.+++.|..++.
T Consensus        10 dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~   67 (78)
T 1gu4_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS   67 (78)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555556788999999999999999999999999999999999999999988764

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.69  E-value=5.8e-08  Score=73.63  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=51.6

Q ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          160 DKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      |+.+++-..|..+|.++|++||.+++....+++.++..|+.||..|+.+++.|..++.
T Consensus        10 dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~   67 (87)
T 1hjb_A           10 DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS   67 (87)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455566667788999999999999999999999999999999999999999988764

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=98.49  E-value=3.7e-07  Score=66.68  Aligned_cols=51  Identities=27%  Similarity=0.240  Sum_probs=41.8

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhh
Q 027587          167 QRRMIKNRESAARSRERKQAYQVELESLAVRLE-------EENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       167 ~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~-------~EN~~L~~~~e~l~~~~~  217 (221)
                      .+|+..||.+++..|.||++|+.+||.+|..|+       .||..|+.++..|..++.
T Consensus        10 ~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           10 SKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            577888999999999999999999999999886       455556666666666654

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.41  E-value=3.7e-08  Score=77.30  Aligned_cols=57  Identities=28%  Similarity=0.325  Sum_probs=43.6

Q ss_pred             CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRY  213 (221)
Q Consensus       157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~  213 (221)
                      ...+....|.+||..|||.+|++||.||.+.+.+||.++..|..+.+.|..++..|.
T Consensus        29 s~~e~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~l~   85 (107)
T 3a5t_A           29 SKEEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMK   85 (107)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSHHH
T ss_pred             CHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677899999999999999999999999999999766655544444444444443

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=97.94  E-value=5.5e-05  Score=57.67  Aligned_cols=58  Identities=24%  Similarity=0.206  Sum_probs=46.3

Q ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587          158 PLDKAAQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIRYVT  215 (221)
Q Consensus       158 ~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~  215 (221)
                      ..+....|..||-.|||..|+.||.||-....+||.++..|..+-+.|+.++..+..+
T Consensus        20 ~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~~e   77 (90)
T 2wt7_B           20 KDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARE   77 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678999999999999999999999999999988777666666666666555543

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=97.20  E-value=0.00047  Score=45.76  Aligned_cols=33  Identities=30%  Similarity=0.281  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      |+|+.+||.++..|+..|.+|..++..|+.+|.
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervstLq~EN~   34 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLSTLQNENQ   34 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            689999999999999999999999999999885

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=95.50  E-value=0.007  Score=46.20  Aligned_cols=37  Identities=19%  Similarity=0.273  Sum_probs=30.4

Q ss_pred             CcccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027587          157 EPLDKAAQQRQRRMIKNRESAARSRERKQAYQVELES  193 (221)
Q Consensus       157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKkay~~eLE~  193 (221)
                      ........|..||..|||..|++||+||-+.+.+|+.
T Consensus        54 s~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           54 SEYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            3445667899999999999999999999998887764

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=92.85  E-value=0.63  Score=32.63  Aligned_cols=43  Identities=23%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          170 MIKNRESAARSRERKQAYQVELESLAVRLEEENEQLLKEKVIR  212 (221)
Q Consensus       170 ~ikNReSA~rSR~RKkay~~eLE~~v~~L~~EN~~L~~~~e~l  212 (221)
                      .-|||..+++||+|=+..++-...-...-.+||++|+--+..+
T Consensus         6 ryknr~asrk~rakfkn~lqh~r~vaaaks~en~rlr~l~kqm   48 (63)
T 2c9l_Y            6 RYKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRLRLLLKQM   48 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence            4579999999999988877777666667779999988655443

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=91.59  E-value=0.21  Score=31.43  Aligned_cols=27  Identities=22%  Similarity=0.057  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          188 QVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      ++.||.+|+.|-.+|..|..+++-|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            568999999999999999999988875

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=91.54  E-value=0.26  Score=31.22  Aligned_cols=28  Identities=21%  Similarity=0.127  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .++.||.+|+.|-.+|..|..+++.|+.
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~   29 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLKX   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            4689999999999999999999988875

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=91.51  E-value=0.29  Score=31.36  Aligned_cols=32  Identities=19%  Similarity=0.039  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      .++.||.+|+.|-.+|..|..+++-|+.-+.+
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~   33 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAE   33 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            46899999999999999999999988865543

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=90.25  E-value=0.3  Score=31.26  Aligned_cols=32  Identities=28%  Similarity=0.105  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      .++.||.+|+.|..+|..|..++.-|+.-+.+
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~   33 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE   33 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence            35789999999999999999999888866543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=89.01  E-value=2.4  Score=32.79  Aligned_cols=31  Identities=39%  Similarity=0.295  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRYVT  215 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~  215 (221)
                      -+.+.+|+.+|.+|+.||..|+++.+.....
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~~   94 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHRQQ   94 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4678899999999999999999998876654

>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B

Probab=88.87  E-value=0.74  Score=33.23  Aligned_cols=34  Identities=6%  Similarity=0.060  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNAE  218 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~~  218 (221)
                      -.|+..|+.++..|+.+...|+++++.|.....+
T Consensus        46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~   79 (83)
T 1nkp_B           46 TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999988877654

>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C

Probab=87.74  E-value=0.85  Score=33.18  Aligned_cols=29  Identities=21%  Similarity=0.090  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRY  213 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~  213 (221)
                      -.|+..|+.++..|+++|..|+.+++...
T Consensus        49 i~YI~~Lq~~~~~L~~e~~~L~~~~~~~~   77 (82)
T 1am9_A           49 IDYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            48999999999999999999999988765

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=87.67  E-value=3.6  Score=30.74  Aligned_cols=66  Identities=15%  Similarity=0.044  Sum_probs=36.8

Q ss_pred             CcccccCCcccHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587          150 KRGRVMLEPLDKAAQQRQRRMIKNRESAARSRERKQ--AYQVELESLAVRLEEENEQLLKEKVIRYVT  215 (221)
Q Consensus       150 ~r~r~~~~~~e~~~~rr~rR~ikNReSA~rSR~RKk--ay~~eLE~~v~~L~~EN~~L~~~~e~l~~~  215 (221)
                      +..|...+..-+.+.-+.-+-++.++-.+..-.||+  .-+..-..++..|+++..++++.+..|...
T Consensus        13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l~~~   80 (84)
T 1gmj_A           13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKLKQS   80 (84)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            333433334334444444444455555555556665  445555567788888888888888888653

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=87.47  E-value=0.82  Score=28.89  Aligned_cols=28  Identities=7%  Similarity=-0.104  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .++.||.+|+.|-.+|..|..++.-|+.
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~   29 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIXK   29 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            4689999999999999999999888765

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=86.48  E-value=1.4  Score=27.72  Aligned_cols=27  Identities=4%  Similarity=-0.066  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          188 QVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      ++.||.+|+.|-.+|..|..++.-|+.
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk~   28 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIKX   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            578999999999999999999888765

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=86.47  E-value=0.91  Score=27.66  Aligned_cols=28  Identities=29%  Similarity=0.264  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          190 ELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       190 eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      .|-.-+..|+.||.+|+.++++|..+.-
T Consensus         3 qlnallasleaenkqlkakveellakvg   30 (31)
T 1p9i_A            3 QLNALLASLEAENKQLKAKVEELLAKVG   30 (31)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4556677899999999999999987653

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=85.84  E-value=0.069  Score=40.64  Aligned_cols=30  Identities=30%  Similarity=0.224  Sum_probs=25.3

Q ss_pred             CcccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027587          157 EPLDKAAQQRQRRMIKNRESAARSRERKQA  186 (221)
Q Consensus       157 ~~~e~~~~rr~rR~ikNReSA~rSR~RKka  186 (221)
                      ........|..||.-|||..|++||+||-.
T Consensus        58 s~~Ql~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           58 TESQLALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             CHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            445566789999999999999999999853

>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1

Probab=85.24  E-value=2  Score=31.21  Aligned_cols=34  Identities=15%  Similarity=0.003  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          184 KQAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       184 Kkay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      -.+||..|+.+...|..|+..|+++++.|..+.+
T Consensus        45 A~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~   78 (80)
T 1nlw_A           45 AKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3589999999999999999999999999987654

>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A

Probab=84.82  E-value=2.1  Score=26.41  Aligned_cols=29  Identities=28%  Similarity=0.125  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027587          188 QVELESLAVRLEEENEQLLKEKVIRYVTN  216 (221)
Q Consensus       188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~~~  216 (221)
                      +..||.+|.+-+.||-+|..++..|.-+|
T Consensus         3 vaqlekevaqaeaenyqleqevaqlehec   31 (33)
T 1fmh_A            3 VAQLEKEVAQAEAENYQLEQEVAQLEHEC   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence            45799999999999999999999998776

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=84.62  E-value=1.6  Score=29.96  Aligned_cols=27  Identities=22%  Similarity=0.017  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          188 QVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .+.|-.+|+.|+.||..|+++++.-.+
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~   31 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSN   31 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence            367889999999999999999977554

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.56  E-value=1.2  Score=30.43  Aligned_cols=19  Identities=26%  Similarity=0.323  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 027587          190 ELESLAVRLEEENEQLLKE  208 (221)
Q Consensus       190 eLE~~v~~L~~EN~~L~~~  208 (221)
                      +|..++..|++++.+|+++
T Consensus        30 eLk~k~~~L~~~~~el~~~   48 (53)
T 2yy0_A           30 EMKEKYEAIVEENKKLKAK   48 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444333

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=83.63  E-value=2.2  Score=26.75  Aligned_cols=27  Identities=11%  Similarity=-0.132  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          188 QVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       188 ~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      ++.||.+|+.|-.+|..|..+++-|+.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            578999999999999999999887765

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=83.50  E-value=1.5  Score=27.69  Aligned_cols=28  Identities=7%  Similarity=-0.096  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .+..||.+|+.|-.+|..|..++.-|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3578999999999999999999887764

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=83.05  E-value=1.6  Score=27.56  Aligned_cols=28  Identities=7%  Similarity=-0.024  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYV  214 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~  214 (221)
                      .++.||.+|+.|-.+|..|..++.-|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4678999999999999999999887764

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=82.87  E-value=1.7  Score=27.49  Aligned_cols=29  Identities=14%  Similarity=-0.010  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027587          187 YQVELESLAVRLEEENEQLLKEKVIRYVT  215 (221)
Q Consensus       187 y~~eLE~~v~~L~~EN~~L~~~~e~l~~~  215 (221)
                      .++.||.+|+.|-.+|..|..+++-|+.-
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~l   30 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAKA   30 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            35789999999999999999999888753

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.72  E-value=1.6  Score=32.20  Aligned_cols=22  Identities=32%  Similarity=0.216  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 027587          186 AYQVELESLAVRLEEENEQLLK  207 (221)
Q Consensus       186 ay~~eLE~~v~~L~~EN~~L~~  207 (221)
                      +.|.+|+.++.+|+.||.-|+.
T Consensus        22 e~I~EL~e~~~qLE~EN~~Lk~   43 (78)
T 1dip_A           22 EQIRELVEKNSQLERENTLLKT   43 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4566788888888888877764

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=81.35  E-value=3.3  Score=27.30  Aligned_cols=24  Identities=29%  Similarity=0.230  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          186 AYQVELESLAVRLEEENEQLLKEK  209 (221)
Q Consensus       186 ay~~eLE~~v~~L~~EN~~L~~~~  209 (221)
                      ....+||.+|+.|+.||.-|++-+
T Consensus        17 ~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           17 NKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHh
Confidence            345799999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	90.04
d1uklc_	61	SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}	86.65
d1nlwa_	79	Mad protein {Human (Homo sapiens) [TaxId: 9606]}	83.92
d1am9a_	80	SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}	83.1
d1nkpa_	88	Myc proto-oncogene protein {Human (Homo sapiens) [	82.41

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.04  E-value=0.067  Score=37.57  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=25.6

Q ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027587          160 DKAAQQRQRRMIKNRESAARSRERKQAYQVE  190 (221)
Q Consensus       160 e~~~~rr~rR~ikNReSA~rSR~RKkay~~e  190 (221)
                      -....+-.||.=||+..|++||+||-...++
T Consensus        43 Ql~lirDIRRRGKNKvAAqnCRKRKld~~d~   73 (74)
T d1sknp_          43 QRQLIRKIRRRGKNKVAARTCRQRRTDRHDK   73 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhhhhhhcc
Confidence            3556788899999999999999999776543

>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.41  Score=31.30  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          186 AYQVELESLAVRLEEENEQLLKEKV  210 (221)
Q Consensus       186 ay~~eLE~~v~~L~~EN~~L~~~~e  210 (221)
                      .|+..|+.++..|++||..|+....
T Consensus        33 ~YI~~Lq~~~~~L~~e~~~L~~~~~   57 (61)
T d1uklc_          33 DYIKYLQQVNHKLRQENMVLKLANQ   57 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999987764

>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Mad protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.92  E-value=0.89  Score=30.66  Aligned_cols=33  Identities=15%  Similarity=0.007  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      -.|+..|+.++..|..+...|++++..|..+..
T Consensus        46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~   78 (79)
T d1nlwa_          46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            579999999999999999999999988887653

>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.10  E-value=0.92  Score=30.84  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027587          186 AYQVELESLAVRLEEENEQLLKEKVIRY  213 (221)
Q Consensus       186 ay~~eLE~~v~~L~~EN~~L~~~~e~l~  213 (221)
                      .|+..|+.++..|+.+|..|+..+..+.
T Consensus        50 ~yI~~L~~~~~~L~~e~~~lk~~~~~~~   77 (80)
T d1am9a_          50 DYIRFLQHSNQKLKQENLSLRTAVHKSK   77 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6999999999999999999988887754

>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Myc proto-oncogene protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=1.1  Score=30.79  Aligned_cols=33  Identities=18%  Similarity=0.159  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027587          185 QAYQVELESLAVRLEEENEQLLKEKVIRYVTNA  217 (221)
Q Consensus       185 kay~~eLE~~v~~L~~EN~~L~~~~e~l~~~~~  217 (221)
                      -.|+..|+.++..|..+...|+++++.|..+.+
T Consensus        51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~   83 (88)
T d1nkpa_          51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478888888888888888888888877776543