Citrus Sinensis ID: 027593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEEEEEcccHHHHccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccEEccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEccccccHHHHHccEHHHHHccEEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEcccccEccccccccHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
malpsqqtvdypsfklvivgdggtgkTTFVKRHLtgefekkyeptigvevhpldfftncgkirfycwdtagqekfgglrdgyyihgqCAIIMFDVTArltyknvptwhrdlcrvcenipivlcgnkvdvknrqvKAKQVTFHRKKNLQYYEISAksnynfekPFLYLARKlagdpnlhfvespalappevQIDLAAQQQHEAELAAaasqplpdddddafe
Flexible Loop (DISEMBL)
malpsqqtvdypsfklvivgdggtgKTTFVKRHltgefekkyeptigvevhpldFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPivlcgnkvdvknrqvkakqvtfhrkknlqyYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAaasqplpdddddAFE
Low Complexity Region (SEG)
MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDlaaqqqheaelaaaaSQPLPDDDDDAFE
Disordered region (IsUnstruct)
*********DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE****************************************
Disordered Region (DISOPRED)
************SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA*************************************************
Disordered Region (DISEMBL)
********VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Disordered Region (DISPRO)
******QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA**************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q8H156	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.986	1e-129
P41918	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.977	1e-128
P38548	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-125
P38547	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.959	1e-125
P41919	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-124
P38546	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-124
P41916	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.945	1e-124
P54766	209	GTP-binding nuclear prote	N/A	no	0.945	1.0	0.990	1e-122
P54765	209	GTP-binding nuclear prote	N/A	no	0.945	1.0	0.985	1e-121
P41917	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.963	1e-118

>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.
Arabidopsis thaliana (taxid: 3702)

>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1

 Score =  456 bits (1173), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 216/221 (97%), Positives = 218/221 (98%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD+ F+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 216/221 (97%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQID+A QQ+HE E+  AA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Vicia faba (taxid: 3906)

>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/221 (95%), Positives = 215/221 (97%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQ  HE EL AA +QPLPDDDD+AFE
Sbjct: 181 ESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1

 Score =  444 bits (1143), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 214/221 (96%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQ HE EL  AA+  LPDDDD+AFE
Sbjct: 181 ESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 214/221 (96%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEV IDLAAQ  HE EL  AA+QPLPDDDD+AFE
Sbjct: 181 ESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 209/221 (94%), Positives = 215/221 (97%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           E+PALAPPEV ID+A QQ++EAEL  AA+QPLPDDDDD FE
Sbjct: 181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/209 (99%), Positives = 209/209 (100%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ
Sbjct: 1   NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR
Sbjct: 61  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 120

Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI
Sbjct: 121 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 180

Query: 193 DLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           DLAAQQQHEAELAAAASQPLPDDDDDAF+
Sbjct: 181 DLAAQQQHEAELAAAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/209 (98%), Positives = 208/209 (99%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ
Sbjct: 1   NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR
Sbjct: 61  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 120

Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI
Sbjct: 121 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 180

Query: 193 DLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           DLAAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 181 DLAAQQQHEAELAQAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/221 (96%), Positives = 219/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEV +D+AAQQQ+EA+LAAAA+QPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
20149262	221	GTP-binding protein [Helianthus annuus]	1.0	1.0	0.990	1e-128
297738907	260	unnamed protein product [Vitis vinifera]	1.0	0.85	0.990	1e-128
296081995	254	unnamed protein product [Vitis vinifera]	1.0	0.870	0.990	1e-128
225430202	221	PREDICTED: GTP-binding nuclear protein R	1.0	1.0	0.990	1e-127
388518503	221	unknown [Lotus japonicus]	1.0	1.0	0.986	1e-127
15240474	221	GTP-binding nuclear protein Ran-3 [Arabi	1.0	1.0	0.986	1e-127
356507752	221	PREDICTED: GTP-binding nuclear protein R	1.0	1.0	0.981	1e-127
344189955	221	Ran3A-1 [Dimocarpus longan] gi|344189957	1.0	1.0	0.986	1e-127
297792995	221	hypothetical protein ARALYDRAFT_918663 [	1.0	1.0	0.981	1e-127
388519813	221	unknown [Lotus japonicus]	1.0	1.0	0.981	1e-127

>gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 221/221 (100%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQID+AAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDMAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 40  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 99

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 100 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 159

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 160 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 219

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 220 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081995|emb|CBI21000.3| unnamed protein product [Vitis vinifera]

 Score =  461 bits (1187), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 34  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 93

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 94  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 153

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 154 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 213

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 214 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430202|ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518503|gb|AFK47313.1| unknown [Lotus japonicus]

 Score =  460 bits (1183), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 221/221 (100%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240474|ref|NP_200330.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] gi|76789666|sp|Q8H156.2|RAN3_ARATH RecName: Full=GTP-binding nuclear protein Ran-3; AltName: Full=Ras-related nuclear protein 3 gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|332009215|gb|AED96598.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507752|ref|XP_003522628.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] gi|356507754|ref|XP_003522629.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 220/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAEL AAASQPLPDDDD++FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDESFE 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344189955|gb|AEM97804.1| Ran3A-1 [Dimocarpus longan] gi|344189957|gb|AEM97805.1| Ran3A-2 [Dimocarpus longan] gi|344189959|gb|AEM97806.1| Ran3A-3 [Dimocarpus longan] gi|344189961|gb|AEM97807.1| Ran3A-4 [Dimocarpus longan] gi|344189963|gb|AEM97808.1| Ran3A-5 [Dimocarpus longan] gi|344189965|gb|AEM97809.1| Ran3A-6 [Dimocarpus longan] gi|344189967|gb|AEM97810.1| Ran3A-7 [Dimocarpus longan] gi|344189969|gb|AEM97811.1| Ran3A-8 [Dimocarpus longan] gi|344189971|gb|AEM97812.1| Ran3A-9 [Dimocarpus longan] gi|344189973|gb|AEM97813.1| Ran3A-10 [Dimocarpus longan] gi|344189975|gb|AEM97814.1| Ran3A-11 [Dimocarpus longan] gi|380690692|gb|AFD93406.1| Ras-like GTP-binding protein 3A-14 [Dimocarpus longan] gi|380690694|gb|AFD93407.1| Ras-like GTP-binding protein 3A-13 [Dimocarpus longan] gi|391358664|gb|AFM43803.1| Ran3A-12 [Dimocarpus longan]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAEL AAASQPLPDDDDDAFE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELQAAASQPLPDDDDDAFE 221

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792995|ref|XP_002864382.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] gi|297310217|gb|EFH40641.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata]

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQID+AAQQQHEAELAAAASQPLPDDDDD FE
Sbjct: 181 ESPALAPPEVQIDIAAQQQHEAELAAAASQPLPDDDDDTFE 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519813|gb|AFK47968.1| unknown [Lotus japonicus]

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 220/221 (99%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELA AASQPLPDDDDDAF+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2161600	221	RAN3 "RAN GTPase 3" [Arabidops	1.0	1.0	0.918	2e-111
TAIR|locus:2147715	221	RAN2 "RAS-related GTP-binding	1.0	1.0	0.909	8.7e-111
TAIR|locus:2147700	221	RAN-1 "RAS-related nuclear pro	1.0	1.0	0.904	7.8e-110
SGD|S000005711	220	GSP2 "GTP binding protein (mam	0.981	0.986	0.751	9.6e-89
WB|WBGene00004302	215	ran-1 [Caenorhabditis elegans	0.936	0.962	0.787	2.3e-87
UNIPROTKB|O17915	215	ran-1 "GTP-binding nuclear pro	0.936	0.962	0.787	2.3e-87
SGD|S000004284	219	GSP1 "Ran GTPase" [Saccharomyc	0.977	0.986	0.746	6e-87
CGD|CAL0005360	214	GSP1 [Candida albicans (taxid:	0.941	0.971	0.754	8.9e-86
UNIPROTKB|Q59P43	214	GSP1 "RAN-like GTP binding pro	0.941	0.971	0.754	8.9e-86
ASPGD|ASPL0000033427	215	ran [Emericella nidulans (taxi	0.932	0.958	0.757	1.8e-85

TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
 Identities = 203/221 (91%), Positives = 204/221 (92%)

Query:     1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 221
             ESPALAPPEVQID               SQPLPDDDDD FE
Sbjct:   181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 201/221 (90%), Positives = 204/221 (92%)

Query:     1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 221
             ESPALAPPEV +D               +QPLPDDDDDAFE
Sbjct:   181 ESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=TAS

TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 200/221 (90%), Positives = 203/221 (91%)

Query:     1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDDDAFE 221
             E+PALAPPEV ID               +QPLPDDDDD FE
Sbjct:   181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 163/217 (75%), Positives = 182/217 (83%)

Query:     1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             M+ P+Q   + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G
Sbjct:     1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             +I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct:    61 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct:   121 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 217
              SPALAPPEVQ+D               + PLPD+DD
Sbjct:   181 ASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217

GO:0005634 "nucleus" evidence=IEA;IGI;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 163/207 (78%), Positives = 174/207 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDDDDD 218
             +D                  LPDDDDD
Sbjct:   188 MDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 163/207 (78%), Positives = 174/207 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDDDDD 218
             +D                  LPDDDDD
Sbjct:   188 MDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005515 "protein binding" evidence=IPI

SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 162/217 (74%), Positives = 181/217 (83%)

Query:     1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             M+ P+    + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G
Sbjct:     1 MSAPAANG-EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             +I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct:    60 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct:   120 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 179

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 217
              SPALAPPEVQ+D               + PLPD+DD
Sbjct:   180 ASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216

GO:0005737 "cytoplasm" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;TAS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 157/208 (75%), Positives = 175/208 (84%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDXXXXXXXXXXXXXXXSQPLPDDDD 217
             VQ+D               + PLPD+DD
Sbjct:   184 VQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 157/208 (75%), Positives = 175/208 (84%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDXXXXXXXXXXXXXXXSQPLPDDDD 217
             VQ+D               + PLPD+DD
Sbjct:   184 VQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=ISS

ASPGD|ASPL0000033427 ran [Emericella nidulans (taxid:162425)]

 Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
 Identities = 156/206 (75%), Positives = 174/206 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHP+ F TN G I+F  WDTAG
Sbjct:     7 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPIKFTTNLGTIQFDVWDTAG 66

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK 
Sbjct:    67 QEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKE 126

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+ +L FV +PALAPPEVQ
Sbjct:   127 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNASLEFVAAPALAPPEVQ 186

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDDDD 217
             +D               +QPLPD+DD
Sbjct:   187 VDATLMQQYSDEMAAAANQPLPDEDD 212

GO:0005622 "intracellular" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006997 "nucleus organization" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.7804	0.9276	0.9490	yes	no
A2WSI7	RAN1_ORYSI	No assigned EC number	0.965	0.9049	0.9049	N/A	no
O17915	RAN_CAEEL	No assigned EC number	0.8172	0.8914	0.9162	yes	no
P54766	RAN1B_LOTJA	No assigned EC number	0.9904	0.9457	1.0	N/A	no
P54765	RAN1A_LOTJA	No assigned EC number	0.9856	0.9457	1.0	N/A	no
P41917	RAN2_ARATH	No assigned EC number	0.9638	1.0	1.0	yes	no
P41916	RAN1_ARATH	No assigned EC number	0.9457	1.0	1.0	yes	no
P38546	RAN1_SOLLC	No assigned EC number	0.9547	1.0	1.0	N/A	no
P38547	RAN2_SOLLC	No assigned EC number	0.9592	1.0	1.0	N/A	no
P38542	RAN_BRUMA	No assigned EC number	0.8133	0.9457	0.9720	N/A	no
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.965	0.9049	0.9049	yes	no
Q9VZ23	RAN_DROME	No assigned EC number	0.7429	0.9683	0.9907	yes	no
P38548	RAN_VICFA	No assigned EC number	0.9547	1.0	1.0	N/A	no
P41919	RANB1_TOBAC	No assigned EC number	0.9547	1.0	1.0	N/A	no
P41918	RANA1_TOBAC	No assigned EC number	0.9773	1.0	1.0	N/A	no
A2YEQ6	RAN3_ORYSI	No assigned EC number	0.8082	0.9909	0.9690	N/A	no
A2Y7R5	RAN2_ORYSI	No assigned EC number	0.9523	0.9502	0.9502	N/A	no
Q6FR65	GSP1_CANGA	No assigned EC number	0.7725	0.9547	0.9859	yes	no
Q4R4M9	RAN_MACFA	No assigned EC number	0.7804	0.9276	0.9490	N/A	no
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.9523	0.9502	0.9502	yes	no
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.7836	0.9411	0.9719	yes	no
Q8K586	RANT_RAT	No assigned EC number	0.7463	0.9276	0.9490	no	no
P38544	RAN_ONCVO	No assigned EC number	0.7894	0.9457	0.9720	N/A	no
P52301	RAN_XENLA	No assigned EC number	0.7804	0.9276	0.9490	N/A	no
P28748	SPI1_SCHPO	No assigned EC number	0.7677	0.9547	0.9768	yes	no
P32836	GSP2_YEAST	No assigned EC number	0.7649	0.9819	0.9863	yes	no
P32835	GSP1_YEAST	No assigned EC number	0.7649	0.9773	0.9863	yes	no
Q5R556	RAN_PONAB	No assigned EC number	0.7804	0.9276	0.9490	yes	no
P79735	RAN_DANRE	No assigned EC number	0.7707	0.9276	0.9534	yes	no
P62828	RAN_RAT	No assigned EC number	0.7804	0.9276	0.9490	yes	no
P41914	RAN_TETPY	No assigned EC number	0.6018	0.9366	0.9282	N/A	no
Q7RVL0	GSP1_NEUCR	No assigned EC number	0.7536	0.9366	0.9627	N/A	no
Q69XM7	RAN3_ORYSJ	No assigned EC number	0.8082	0.9909	0.9690	no	no
Q7ZZX9	RAN_CARAU	No assigned EC number	0.7658	0.9276	0.9534	N/A	no
P62825	RAN_CANFA	No assigned EC number	0.7804	0.9276	0.9490	yes	no
P62826	RAN_HUMAN	No assigned EC number	0.7804	0.9276	0.9490	yes	no
P62827	RAN_MOUSE	No assigned EC number	0.7804	0.9276	0.9490	yes	no
Q9P4E9	GSP1_CANAW	No assigned EC number	0.7692	0.9411	0.9719	N/A	no
Q9YGC0	RAN_SALSA	No assigned EC number	0.7658	0.9276	0.9534	N/A	no
Q61820	RANT_MOUSE	No assigned EC number	0.7414	0.9276	0.9490	no	no
Q8H156	RAN3_ARATH	No assigned EC number	0.9864	1.0	1.0	yes	no
P33519	RAN_DICDI	No assigned EC number	0.6731	0.9276	0.9669	yes	no
Q8TFK3	GSP1_YARLI	No assigned EC number	0.7451	0.9411	0.9719	yes	no
P42558	RAN_CHICK	No assigned EC number	0.7804	0.9276	0.9490	yes	no
P38545	RAN_PLAFA	No assigned EC number	0.6682	0.9547	0.9859	yes	no
P41915	RAN_TETTH	No assigned EC number	0.6009	0.9366	0.92	N/A	no
Q6GL85	RAN_XENTR	No assigned EC number	0.7756	0.9276	0.9490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	0.0
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-158
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-148
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-134
pfam00071	162	pfam00071, Ras, Ras family	1e-65
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	7e-52
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-42
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-36
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-35
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-34
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	7e-32
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-31
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	7e-31
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-30
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-30
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-30
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-30
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-30
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-29
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-28
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	9e-28
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	5e-27
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-27
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	5e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-26
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-25
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-25
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	3e-25
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	1e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	2e-24
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	8e-24
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-23
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-23
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	1e-22
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-22
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-22
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-21
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-21
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-21
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	9e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-20
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-19
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-19
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	3e-19
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-19
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	6e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	9e-18
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-18
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-17
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	3e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	3e-17
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-16
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-16
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	2e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-15
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	5e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-12
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	4e-12
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	4e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-11
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-10
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	5e-05
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-05
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-04
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	6e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	8e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.002
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.003

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  500 bits (1290), Expect = 0.0
 Identities = 217/219 (99%), Positives = 219/219 (100%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP+QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDA 219
           ESPALAPPEVQIDLAAQQQHEAELAAAA+QPLPDDDDDA
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDDA 219

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  434 bits (1119), Expect = e-158
 Identities = 167/213 (78%), Positives = 184/213 (86%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           QQ  + P FKL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F+TNCG I F 
Sbjct: 2   QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN 61

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
            WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRD+ RVCENIPIVL GN
Sbjct: 62  VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGN 121

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           KVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKPFL+LAR+L  DPNL FV +PAL
Sbjct: 122 KVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPAL 181

Query: 186 APPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 218
           AP E+QID     Q E EL AAA+ PLPDDDDD
Sbjct: 182 APEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  411 bits (1057), Expect = e-148
 Identities = 162/200 (81%), Positives = 174/200 (87%)

Query: 19  VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78
           VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGL
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138
           RDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120

Query: 139 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198
           +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A   
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180

Query: 199 QHEAELAAAASQPLPDDDDD 218
           Q+E +L  AA+  LPD+DDD
Sbjct: 181 QYEHDLEVAATTALPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  374 bits (962), Expect = e-134
 Identities = 144/166 (86%), Positives = 154/166 (92%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPLDF TN GKIRF  WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           VK KQ+TFHRKKNLQYYEISAKSNYNFEKPFL+LARKL G+PNL F
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  199 bits (509), Expect = 1e-65
 Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDGG GK++ + R    +F ++Y PTIGV+ +      +   ++   WDTAGQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R 132
           F  LR  YY   Q  ++++D+T+R +++NV  W  ++ R   EN+PIVL GNK D+++ R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            V  ++     ++  L + E SAK+N N E+ F  LAR++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  164 bits (418), Expect = 7e-52
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GKT+ + R +  +F + Y+ TIGV+        +  K++   WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKN 131
           +F  +   YY     AI+++DVT R +++N+  W  +L      NIPI+L GNK D    
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           RQV   +A+Q  F ++  L ++E SAK+  N ++ F  LAR
Sbjct: 121 RQVSTEEAQQ--FAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  140 bits (355), Expect = 3e-42
 Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF----FTNCGK-IRFYCWD 68
           FK++++GD G GK++ + R   G+F ++Y+ TIGV     DF        GK ++   WD
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV-----DFKTKTIEVDGKRVKLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  +   YY     A++++D+T R +++N+  W ++L      N+ I+L GNK 
Sbjct: 56  TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKS 115

Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D++  RQV  ++   F  +  L ++E SAK+N N E+ F  LAR++
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (337), Expect = 4e-39
 Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FK+V++GDGG GKTT + R +  EF + Y PTIG              I+   WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 129
           QE++  LR  YY      +I++D T R  + +    W  +L  +  +++PI+L GNK+D+
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 130 KNRQ-----------------VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARK 170
            + Q                 V A +       N    E SAKS    N  + F  L RK
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 171 L 171
           L
Sbjct: 184 L 184

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  125 bits (316), Expect = 1e-36
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQ 72
           K+++VG+G  GK++ ++R + G F K Y+ TIGV+      F       +R   WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  I++F  T R +++ + +W   +   C +IP+VL   K+D+ ++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121

Query: 133 Q-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +  ++     ++  L  +  S K ++N  + F YLA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 27/172 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKIR 63
           KLV++G GG GK+    R ++GEF ++Y+PTI           G     LD         
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT-LDIL------- 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE+F  +RD Y  +G   I+++ +T+R +++ +      + RV   E++PIV
Sbjct: 53  ----DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108

Query: 122 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D++N RQV  ++      +    + E SAK+N N ++ F  L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  118 bits (298), Expect = 8e-34
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYC 66
            FKLV++GD   GK++ V R +  EF +  E TIG       F T      +   ++F  
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAA-----FLTQTVNLDDTT-VKFEI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE++  L   YY     AI+++D+T+  +++   +W ++L      NI I L GN
Sbjct: 55  WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    RQV  ++   +  +  L + E SAK+  N  + F  +ARKL
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  113 bits (285), Expect = 7e-32
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK++ + R     F++    TIGV+        +  K++   WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  L   YY   Q  I+++DVT R T+ N+ TW  +L       +   +L GNK+D +N
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  ++   F RK N+ + E SAK+    ++ F  L  K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  111 bits (281), Expect = 3e-31
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 27/166 (16%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----CGK-IRFYCWD 68
           FK+V++GD G GK+  + R    EF    + TIGVE     F T      GK I+   WD
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-----FATRTIQIDGKTIKAQIWD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVL 122
           TAGQE++  +   YY     A++++D+T + T++NV  W      H D      NI I+L
Sbjct: 59  TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIML 113

Query: 123 CGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            GNK D+++ R V   +AK   F  K  L + E SA    N E+ F
Sbjct: 114 VGNKSDLRHLRAVPTEEAKA--FAEKNGLSFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  110 bits (278), Expect = 7e-31
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKIRFYCWD 68
            KLV +GD   GKT+ + R +   F+ +Y+ TIG+     DF +         +R   WD
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI-----DFLSKTMYVDDKTVRLQLWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127
           TAGQE+F  L   Y      A++++D+T R ++ N   W  D+     N   IVL GNK 
Sbjct: 56  TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115

Query: 128 DV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+   RQV  ++     ++ N  + E SAK+ +N ++ F  +A+ L
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  110 bits (277), Expect = 1e-30
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 31/173 (17%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKI 62
           +KLV++G GG GK+    + + G F   Y+PTI           G     LD        
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-LDIL------ 53

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++PI
Sbjct: 54  -----DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108

Query: 121 VLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VL GNK D+++ R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  111 bits (279), Expect = 1e-30
 Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 21/204 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFTNCGKIRFYCWDT 69
           FK++++GD G GKT+ +KR++ G F + Y+ TIGV+    V   D  T     R   WD 
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVV---RLQLWDI 57

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCG 124
           AGQE+FGG+   YY     AII+FDVT   T++ V  W  DL  +V     E IP +L  
Sbjct: 58  AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117

Query: 125 NKVDVKNRQVKAKQVTFHR--KKN--LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHF 179
           NK D+K  ++        +  K+N  + ++E SAK N N E+   +L +  L  D  L  
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQ- 176

Query: 180 VESPALAPPEVQIDLAAQQQHEAE 203
                    +  IDL  +      
Sbjct: 177 ---SPEPDEDNVIDLKQETTTSKS 197

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  109 bits (275), Expect = 2e-30
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT  V+R  +G F ++   TIGV+           +++   WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  +   YY     AII +D+T R ++++VP W  ++ +    N+ ++L GNK D++ +
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 133 QVKAKQVTFHRKKNLQYY-------EISAKSNYNFEKPFLYLARKL 171
               ++V F     L  +       E SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  109 bits (275), Expect = 2e-30
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCG 60
             +KLV++G GG GK+    + + G F  +Y+PTI           G     LD      
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-LDIL---- 55

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 118
                  DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++
Sbjct: 56  -------DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDV 108

Query: 119 PIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           PIVL GNK D++N R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 PIVLVGNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  108 bits (273), Expect = 5e-30
 Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 13/167 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCG--KIRFYCWD 68
           FK+V++G+G  GKT+ V R++  +F +K+E T         FF    N G  +I    WD
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS-----FFQKTVNIGGKRIDLAIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE++  L   YY     AI+++D+T   +++ V  W ++L ++   NI +V+ GNK+
Sbjct: 56  TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115

Query: 128 D-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           D  + R V   +   + +    +++E SAK+    E+ FL LA+++ 
Sbjct: 116 DLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  106 bits (268), Expect = 3e-29
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVTVDDRLVTLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123
           TAGQE+F  L   +Y    C ++++DVT   +++++ +W  +          EN P V+ 
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115

Query: 124 GNKVDV-KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           GNK+D+ + RQV  K+       K N+ Y+E SAK   N ++ F  +AR 
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  103 bits (260), Expect = 4e-28
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     F   +  TIG++        +  KI+   WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   +++N+  W R++     E++  +L GNK D++ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLAR 169
               + V+    + L      ++ E SAK+N N E+ FL LA+
Sbjct: 124 ----RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  103 bits (258), Expect = 9e-28
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
            F  +   YY     A++++D+T R T+ ++ +W  D  R     N+ I+L GNK D+++
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123

Query: 132 RQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+  + +    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  101 bits (254), Expect = 3e-27
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYC 66
           P++KLV+VG GG GK+    + +   F   Y+PTI       D +T   +I     R   
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE------DSYTKQCEIDGQWARLDI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE+F  +R+ Y   G+  +++F VT R +++ V  +H  + RV   +  P++L G
Sbjct: 55  LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114

Query: 125 NKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D+++++  +++      R+  + Y E SAK   N +K F  L R
Sbjct: 115 NKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  101 bits (253), Expect = 5e-27
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 27/173 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR---------- 63
           FKL+++GD G GK+  + R     + + Y  TIGV     DF     KIR          
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DF-----KIRTIELDGKTVK 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      II++DVT + ++ NV  W +++ R   EN+  +L
Sbjct: 53  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112

Query: 123 CGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK D+ +++V    +AK+  F  +  + + E SAK+  N E+ F+ +AR++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  100 bits (252), Expect = 5e-27
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK- 130
           +F  +   YY     A++++D+T+R ++  +  W  D  R     +I I+L GNK D++ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119

Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 98.4 bits (245), Expect = 5e-26
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        N  KI+   WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L GNK D++  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 98.7 bits (246), Expect = 7e-26
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P        ++  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAGQE+F  L   ++      ++MFD+T+  ++ NV  W   L     CEN  IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 97.9 bits (244), Expect = 8e-26
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           V+VG GG GK++ +   L GE          T   +V+  +      K+     DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58

Query: 74  KFGGLRDGYYIHG-----QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
           +FGGL                +++ D T R + ++            E IPI+L GNK+D
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKID 117

Query: 129 -VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLAR 169
            ++ R+V+         K   +  +E+SAK+    ++ F  L  
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 97.2 bits (242), Expect = 2e-25
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD   GK+  V+R L   +E +   T  + ++  +       I    WDTAGQE+
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134
           F  +   YY      I++FDVT ++TYKN+  W+ +L      IP ++  NK+D+    V
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-V 120

Query: 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
             K+  F  K NL  Y +SA    N  K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 96.9 bits (241), Expect = 2e-25
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125

Query: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +  RQV  +  Q       +  Y+E SAK   N    F    R+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 97.6 bits (243), Expect = 3e-25
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  +++   WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 74  KFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
           +F  +   YY   HG   I+++DVT   ++ NV  W +++ + C+++  VL GNK D   
Sbjct: 67  RFRTITSTYYRGTHG--VIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124

Query: 132 RQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF-----LYLARKLAGDPN 176
           R+V        F  +  +  +E SAK N N E+ F     L L  K      
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  V+R   G F      TIGV+           KI+   WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  +L GNK+D+  R
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 96.5 bits (240), Expect = 1e-24
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA       DY  FK+V++GD G GK+  + R    EF  + + TIGVE           
Sbjct: 1   MAHRVDHEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIP 119
            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 60  TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119

Query: 120 IVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           I++ GNK D+ + R V  +       K+ L + E SA    N EK F  +  ++      
Sbjct: 120 IMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI-----Y 174

Query: 178 HFVESPALAPPE 189
           H +   ALA  E
Sbjct: 175 HIISKKALAAQE 186

Length = 216

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 95.9 bits (238), Expect = 2e-24
 Identities = 58/183 (31%), Positives = 96/183 (52%), Gaps = 7/183 (3%)

Query: 1   MALPSQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC 59
           M   S Q+  Y  SFK++++GD G GK++ +   ++   E    PTIGV+          
Sbjct: 1   MGSSSGQSSGYDLSFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGG 59

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENI 118
            +++   WDTAGQE+F  L   YY + Q  I+++DVT R T+ N+   W +++     N 
Sbjct: 60  KRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQ 119

Query: 119 PIV--LCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 174
             V  L GNKVD ++ +  +++  +   ++    + E SAK+  N E+ F  LA K+   
Sbjct: 120 DCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEV 179

Query: 175 PNL 177
           P+L
Sbjct: 180 PSL 182

Length = 211

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 94.5 bits (236), Expect = 2e-24
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGDG  GKT  +  + T +F  +Y PT+  + +  +   +  ++    WDTAGQE+
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD----- 128
           +  LR   Y      ++ F V +  +++NV T W+ ++   C N+PI+L G K+D     
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 129 --VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +K  + K K +T             ++Y E SA +    ++ F    R
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE++  +RD Y   G+  + +F + +R +++++ T+   + RV   +++P+V
Sbjct: 55  ----DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110

Query: 122 LCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+  R V  +Q     +   + Y E SAK+    E+ F  L R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +KLV++G GG GK+    + + G F +KY+PTI       VEV       +  +      
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-------DGQQCMLEIL 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 126 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ +V  K+      R+    + E SAK+  N  + F  L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 94.1 bits (234), Expect = 8e-24
 Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 15/169 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC------GKIRFYCW 67
           F+L+++GD   GK++ +KR   G F +  +PT+GV     DFF+         +I+   W
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV-----DFFSRLIEIEPGVRIKLQLW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGN 125
           DTAGQE+F  +   YY +    +++FD+T R ++++V  W  +            +L G+
Sbjct: 58  DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117

Query: 126 KVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           K D+++ RQV + +     +   ++Y E SA++  N E+ F  L +++ 
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF-YCWDTA 70
              K+V+VGDGG GKT  +  +  G F ++Y PT+  E +        GKI     WDTA
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV 129
           GQE +  LR   Y      +I + V    +  NV   W+ ++   C   PIVL G K D+
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120

Query: 130 ---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 164
              KN   K +      VT  + +++        Y E SAK   N ++ F
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 91.3 bits (227), Expect = 3e-23
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F ++ E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++DVT   ++ ++P+W  + C    +   +P +L GNK D+
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDL 121

Query: 130 K-NRQVKAKQVT-FHRKKNLQYYEISAK---SNYNFEKPFLYLARKL 171
           +   QV       F    ++  +E SAK    N + E  F+ LA KL
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEV----HPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++G F +KY+PTI       +EV      L+         
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAG E+F  +RD Y  +GQ  I+++ +  + T++++      + RV   E +PI+
Sbjct: 55  ----DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 122 LCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNKVD++  R+V  A+      +    + E SAKS     + F  + R++
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 90.0 bits (223), Expect = 1e-22
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           F+L+++GD G GKT  + R    EF   +  TIGV+        +  K+R   WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KN 131
           ++  +   YY   Q   +++D+++  +Y+++  W  D+     E +  +L GNK D  + 
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 132 RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168
           RQV  +Q     K+    ++E SA +N N ++ F  L 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 87.8 bits (218), Expect = 6e-22
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            K+VIVGD   GK+T + R L  +    +Y+P             +    +F   DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 129
           E +  +R  YY   + ++ +FD+   +    + +    +++    E  +PI+L GNK+D+
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 130 KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
           ++ ++K      F +        +SA++  N +  F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 88.8 bits (220), Expect = 8e-22
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  + +    F ++  L + E SAK+  N E+ F+  A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 87.2 bits (216), Expect = 2e-21
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK- 130
           E+F  +   YY      ++++DVT + ++ N+  W  ++      ++ I+L GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R VK +      ++  + + E SAK+  N E  F  +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (216), Expect = 2e-21
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GDG  GKT+ +     G F + YEPT+  E +  D F +   +    WDTAGQE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK--- 130
           F  LR   Y      ++ F V    + +NV + W  ++   C  + +VL   K D++   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 131 NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
           N + +      +        R    +Y E SAK N    + F   AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 11/158 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 164
           +V    V+  R + L      +++E SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 85.9 bits (213), Expect = 3e-21
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTA 70
            K+++VG GG GK+    + +  EF + YEPT      +   LD      +++    DTA
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD----GEEVQLNILDTA 56

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128
           GQE +  +RD Y+  G+  +++F +T   ++  +  +   + RV   +N+P++L GNK D
Sbjct: 57  GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116

Query: 129 -VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               RQV   +      +  + Y E SAK+  N +K F  L R++
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 16/168 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----TNCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F  KY+PTI       D +      +C +      D
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE------DSYRKQIEVDCQQCMLEILD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ ++ ++      + RV   E++P++L GNK
Sbjct: 56  TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK 115

Query: 127 VDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ +V +K+      R+  N  + E SAKS  N ++ F  L R++
Sbjct: 116 CDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 85.1 bits (211), Expect = 8e-21
 Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQ 72
           K++ +G+ G GK+  +KR+  G F  KY PTIG++  V  +    N  ++R   +D +G 
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS-VRNK-EVRVNFFDLSGH 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNK 126
            ++  +R+ +Y   Q  ++++DVT R +++ + +W +++          ENI +V+C NK
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D  K+R V   +   +   K  +Y+E SA +     + F  L   +
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 85.0 bits (211), Expect = 9e-21
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           LV+VGDG  GKT  +  + T  F + Y PT+  E +  D   +   +    WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV----- 129
             LR   Y      +I F V +  +++NV   W+ ++   C N+PI+L G K+D+     
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119

Query: 130 ---KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
              +  + K + VT+ + + L       +Y E SA +   
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 83.4 bits (206), Expect = 5e-20
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDIL------- 58

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIV 121
               DTAGQE++  +RD Y   GQ  + ++ +T+R +++ + ++   + RV +   +P++
Sbjct: 59  ----DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+ + RQV   +     +   + + E SAK   N ++ F  L R++
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 82.9 bits (205), Expect = 1e-19
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 23/175 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF--------Y 65
            K+V++GDG +GKT+ ++R     F K Y+ TIG+     DFF+   +I           
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGL-----DFFSR--RITLPGSLNVTLQ 53

Query: 66  CWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPI 120
            WD  GQ+  G + D  YI+G Q   +++D+T   +++N+  W   + +V E       +
Sbjct: 54  VWDIGGQQIGGKMLDK-YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 121 VLCGNKVDV-KNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           VL GNK D+  NRQV A K   F ++ +++   +SAK+       F  +A +L G
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NR 132
           F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 167
           ++  +Q      +   +++ E SAK N+N ++ FL L
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 81.4 bits (201), Expect = 3e-19
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 37/178 (20%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---------------VEVHPLDFFTNC 59
           KLV++GDGG GKT    +     F + Y+PTI                +EV         
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEV--------- 51

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-- 117
                   DTAGQE++  LRD +   G+  I+++ +T+R T++ V  +   + RV +   
Sbjct: 52  -------LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESA 104

Query: 118 --IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +PI++ GNK D    +  + +      R+   ++ E SAK+N N E+ F  L R L
Sbjct: 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 18/169 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +K+V++G GG GK+    + +   F + Y+PTI       VE+                 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-------L 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +R+ Y   GQ  ++++ VT+  +   +      + R+   +N+P+VL GN
Sbjct: 55  DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114

Query: 126 KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ RQV +   V+  ++  N+ +YE SA+   N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 79.0 bits (194), Expect = 2e-18
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%)

Query: 38  FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97
           F+  Y+ TIG++      + + G +R   WDTAGQE+F  L   Y      AI+++D+T 
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 98  RLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 154
           R +++N   W +D L    +++ I L GNK D+ + R+V  ++ +   ++ N  ++E SA
Sbjct: 65  RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 155 KSNYNFEKPFLYLARKLAGDPNL 177
           K+ +N +  F  +A KL   PNL
Sbjct: 125 KAGHNIKVLFKKIAAKL---PNL 144

Length = 176

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 79.0 bits (195), Expect = 6e-18
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 44/195 (22%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-----D 68
           +++V++G    GKT  V R L G FE++Y PTI       DF      IR   +     D
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE------DFHRKLYSIRGEVYQLDILD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---------- 118
           T+G   F  +R    + G   I++F +  R +++ V       CR+ E I          
Sbjct: 55  TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKNK 107

Query: 119 -------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 168
                  P+V+CGNK D    R+V+  +V       +N  Y+E+SAK N N ++ F  L 
Sbjct: 108 TKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

Query: 169 RKLAG-----DPNLH 178
             LA       P+LH
Sbjct: 168 -SLAKLPNEMSPSLH 181

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 77.2 bits (190), Expect = 8e-18
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 15  KLVIVGDGGTGKTTFVKR-HLTG-EFEKKYEPTIGVEVH----PLDFFTNCGKIRFYCWD 68
           +  +VGD   GK+  V+  H  G  F+K Y  T G ++     P+   ++   +  + +D
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSD--SVELFIFD 59

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI--PIVLCGNK 126
           +AGQE F  + +  +       +++DVT  +++ N   W   +      +  P VL GNK
Sbjct: 60  SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNK 119

Query: 127 VD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D    R+V A Q     +   L++YE SAK    +E PFL LAR
Sbjct: 120 CDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 77.6 bits (191), Expect = 9e-18
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT+ +     GEF ++Y PT+  E +  D   +   ++   WDTAGQE+
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV---- 129
           +  LR   Y      +I F +    + +NV T W  ++ R C N+P++L G K D+    
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEA 121

Query: 130 --KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
             K      + V   + K +       +Y E SA +    +  F    R
Sbjct: 122 VAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 77.7 bits (191), Expect = 9e-18
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQ
Sbjct: 3   SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      II F + +  +Y+NV   WH ++C  C N+PI+L G K D++N
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 76.1 bits (187), Expect = 3e-17
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K ++VGD   GK   +     G  E  Y   +G++        +  +++   WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NR 132
           +F  +   Y    Q  I+++D+T R ++  +  W +++      +P +L GN++ +   R
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
           QV  +Q   +  +  + ++E+S   N+N  + F  LAR +     L     P  +PP+
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV-----LMRHGRPPQSPPQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 75.7 bits (186), Expect = 3e-17
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VGD   GKT  + R     F+K Y+ TIGV+     F           WDTAGQE+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVK 130
           F  +   YY   Q  II+FD+T   + ++   W  D  +  EN P    + L G K D+ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119

Query: 131 N----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176
           +      ++   +   R+   +Y+ +SA +  N  + F +    L  +  
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENV-RDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 76.0 bits (187), Expect = 3e-17
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +LV +G  G GKT  ++R L   FE K+  T+  E+H  ++     K+     DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKN 131
           F  +R     +G    +++ V    +++ V     ++  V E+  +PIV+ GNK+D +  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL---- 185
           RQV+A     T     N  + E SAK N N  + F    ++L    NL    SPAL    
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVF----KELLQQANLPSWLSPALRRRR 175

Query: 186 --APPEVQ 191
             AP E+Q
Sbjct: 176 ESAPSEIQ 183

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 16/193 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           K+V++G    GKT+ V+R++   F    Y+ TIG              +    WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           ++  +   YY   + AI+ +D+T   +++    W ++L  + E+  I LCG K D+  + 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121

Query: 134 VKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE-SPALA 186
              +QV FH  ++       Q++E S+K+  N ++ F    +K+A D    FV  +    
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAED----FVSRANNQM 173

Query: 187 PPEVQIDLAAQQQ 199
             E  +DL  ++ 
Sbjct: 174 NTEKGVDLGQKKN 186

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++  F   ++PTI            E   LD         
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDIL------- 55

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQ +F  +RD Y   G+  II + VT R +++    +   + RV   E+IP+V
Sbjct: 56  ----DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           L GNKVD++  RQV  ++     R+ N  ++E SA   +  +  F  L R++ 
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N  
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
                  ++K + V     + +        Y E SAK+ 
Sbjct: 122 HTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD G+GK++ + + + GEF  +     G  +       +        WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNK 126
                +           ++++D+T R +   V     W  +L ++   IP++L GNK
Sbjct: 61  L--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.9 bits (171), Expect = 3e-15
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++V+ G GG GK++ V R + G F + Y PTI      +    +C K        DT G
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---ISCSKSICTLQITDTTG 58

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 127
             +F  ++      G   I+++ +T++ + + +   +  +C       E IPI+L GNK 
Sbjct: 59  SHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKC 118

Query: 128 D-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           D   +R+V + +     R  N  + E SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------VEVHPLDFFTNCGKIRFYCWD 68
           K+ ++G    GK++   + + G F + Y PTI       +     ++  +   +     D
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEY--HLEIV-----D 55

Query: 69  TAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 124
           TAGQ+++  L   Y   IHG   I+++ VT+R +++ V   +  +  +   E++PIVL G
Sbjct: 56  TAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D+   RQV A++           + E SAK N N E+ F
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSN 157
            +   +++   +   + Y +  A + 
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAK 145

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 67.1 bits (164), Expect = 5e-14
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  ++      F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N P++L G K D++ 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRT 119

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 65.1 bits (159), Expect = 2e-13
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V+VGDG  GKT+ +  + T  +  +Y PT        D F+     +   +R    DT
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT------AFDNFSVVVLVDGKPVRLQLCDT 55

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQ++F  LR   Y      ++ F V    +++N+   W  ++ +     PI+L G + D
Sbjct: 56  AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115

Query: 129 --------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   ++  +   K V+  R K L       +Y E SA +  N ++ F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++++G  G GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNVKFTVWDVGGQDK 55

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   YY +    I + D + R   + +     +L ++         P+++  NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112

Query: 130 KNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                +++      +   + +       SA +    ++   +L
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 62.2 bits (151), Expect = 4e-12
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 22/130 (16%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF------ 54

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 55  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109

Query: 122 LCGNKVDVKN 131
           L G ++D+++
Sbjct: 110 LVGTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 61.8 bits (150), Expect = 4e-12
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V VGDG  GKT  +  + +  F   Y PT+       D F+     +   +    WDT
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV------FDNFSANVVVDGNTVNLGLWDT 56

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128
           AGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L      +PIVL G K+D
Sbjct: 57  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116

Query: 129 VKN 131
           +++
Sbjct: 117 LRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73
           KL++VG GG GKT+  K+ +  +F+     T G+ V           KIR   WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N 131
            +      +       +++FD+        VP W R +       P++L G  +D     
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
             +K              + +S K+     +
Sbjct: 123 DILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+ ++GD   GKT+ + +++ GEF+++Y  T+GV            +I F  WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FGGLRDGYYI--HGQCAII-MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDV 129
           F    +   +      AI+ MFD+T + T  ++  W+R   R      IPI L G K D+
Sbjct: 62  F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYDL 116

Query: 130 -------KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                  +  ++  +   + +         S   + N +K F ++  K+
Sbjct: 117 FADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.9 bits (142), Expect = 6e-11
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165
               +++ HR+  + Y + +  +       ++
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYI 157

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 17/154 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           + +VG   +GKTT V    +G+F +   PT+G  +  +      G +    WD  GQ +F
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRF 57

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVK 130
             + + Y       + + D   R     +     +L  + E      IP+++ GNK D+ 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114

Query: 131 NRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 159
                 + +     K++       Y ISAK   N
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD   GKT+ + R++   F K    T+G       +    G      WDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKN 131
           F GL   Y       I+ +DV+   + + +    R L       E+    + GNK+D+  
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 132 RQVKA---------------KQVTFH----------RKKNLQ----------YYEISAKS 156
               A               +QVT            + K L            +E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 157 NYNFEKPFLYLAR 169
            YN ++ F YL  
Sbjct: 175 GYNVDELFEYLFN 187

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYC 66
           K+ ++G  G GK+    R LT  F  +YEP +         ++   +       +I    
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL-----EI---- 51

Query: 67  WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 114
            DT GQ++          LR  DG+       ++++ +T R ++  V       R++ + 
Sbjct: 52  QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104

Query: 115 CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 159
              IP++L GNK D+ + RQV   +      +    ++E+SA  NY 
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFY--CWD 68
            K V+VGDG  GKT  +  +    F ++Y PT+       D +      G  ++    +D
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------FDHYAVSVTVGGKQYLLGLYD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKV 127
           TAGQE +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++
Sbjct: 55  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114

Query: 128 DVKN 131
           D+++
Sbjct: 115 DLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 25/128 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++IVG    GKTT + + L GE      PTIG  V  + +      IRF  WD  GQE
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVEEIVY----KNIRFLMWDIGGQE 70

Query: 74  KFGGLRDG---YYIHGQCAIIMFDVT--ARLT------YKNVPTWHRDLCRVCENIPIVL 122
               LR     YY +    I++ D T   RL       YK +   H DL        +++
Sbjct: 71  S---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAVLLV 121

Query: 123 CGNKVDVK 130
             NK D+K
Sbjct: 122 LANKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 50.8 bits (121), Expect = 6e-08
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       + + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           +  +R   Y      +I FD++   T  +V   W  +    C N  +VL G K+D++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 25/131 (19%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWD 68
           +I+G    GKTTF+++  T +F K Y+        PT+G+ +  ++     GK R   WD
Sbjct: 3   LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMFWD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL-----TYKNVPTWHRDLCRVCENIPIV 121
             GQE+   L D YY      I + D T   R       ++ V   +  L    E +P++
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEAL----EGVPLL 112

Query: 122 LCGNKVDVKNR 132
           +  NK D+ + 
Sbjct: 113 VLANKQDLPDA 123

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRF 64
           +++V++GD G GK++       G +E           YE T+ V+            +  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEAT-------LVV 53

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
           Y  D   QE    L D     G   +I++ VT R +++        L   R  E+IPI+L
Sbjct: 54  Y--DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIIL 111

Query: 123 CGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159
            GNK D V++R+V     +A  V F    + ++ E SA   +N
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVF----DCKFIETSAALQHN 150

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++I+G    GKTT + +   GE      PTIG  V  + +      ++F  WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
           E    L   Y+ +    I + D   R     +     +L  +       + P+++  NK 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 128 DVKN 131
           D+  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD----- 68
            ++ ++G  G GKT  V++ L  EF ++Y PT    ++      +      +  D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN- 117
               TAGQE    +F GLR+      +  I+++D+ +  ++  V    + +   R   N 
Sbjct: 61  RYPGTAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 118 -IPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYN 159
             PIV+ GNK D +  +   + V      +     Y E SAK N++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++V +G  G GKTT + +    EF +   PTIG  V  +++      ++F  WD  G+ K
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEY----KNLKFTIWDVGGKHK 55

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY++ Q  + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++    + + +  W  ++   C +  I+L G K D++   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDL 133

Query: 134 VKAKQVTFHRKKNLQYYEISA 154
               +++  ++  + Y +  A
Sbjct: 134 STLMELSNQKQAPISYEQGCA 154

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 41.6 bits (98), Expect = 5e-05
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++G   +GKTT +   L     +     PT+G     ++ F   G + F  +D +GQ 
Sbjct: 2   ILVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVG---FNVESFKK-GNLSFTAFDMSGQG 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127
           K+ GL + YY + Q  I + D + RL              H D+      IPI+   NK+
Sbjct: 57  KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKH--RRIPILFYANKM 114

Query: 128 DVKNRQVKAK 137
           D+ +     K
Sbjct: 115 DLPDALTAVK 124

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++V++GD G GK++ +   ++ EF +         TI  +V P    T    I     DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT---TIV----DT 56

Query: 70  AGQEKFGGLRDGYY--IHGQCAI-IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
           + + +    R      I     I +++ V    T + + T W   + R+   +PI+L GN
Sbjct: 57  SSRPQ---DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113

Query: 126 KVDV--KNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           K D+   + Q   ++        F  ++     E SAK+  N  + F Y A+K
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEF--REIETCVECSAKTLINVSEVF-YYAQK 163

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTY----KNISFTVWDVGGQDK 69

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY + Q  I + D   R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--------------------PLD 54
           ++++VGD G GK++ V   + G    +   TIG  V                       D
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 55  FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
           FF          WD +G E++   R  +Y      I + D++ R T  ++  W  +   V
Sbjct: 83  FFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---V 132

Query: 115 CEN----------------IPIVLCGNKVDVKNRQ 133
                              +P ++ GNK D+  ++
Sbjct: 133 AATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167

Length = 334

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97

Length = 181

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.2 bits (89), Expect = 8e-04
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAG 71
           KL IVG+  +GK+  V R+LTG + +   P  G    EV  +D  ++   IR    D  G
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVL-VDGQSHLLLIR----DEGG 56

Query: 72  QE--KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCG--N 125
               +F G  D         I +F +    +++ V   +  L   R    IP++L G  +
Sbjct: 57  APDAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109

Query: 126 KVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   N +V    +A+Q+     K   YYE  A    N E+ F   A+K+
Sbjct: 110 AISASNPRVIDDARARQLC-ADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNLKFTMWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY +    I + D   R
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDR 97

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR 80

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.98
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.98
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.98
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.98
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.98
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.98
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.98
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.98
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.97
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.97
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.97
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.97
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.97
PTZ00369	189	Ras-like protein; Provisional	99.97
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.97
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.97
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.97
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.97
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.97
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.97
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.97
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.97
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
PLN03108	210	Rab family protein; Provisional	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.96
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.96
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.96
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.96
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.96
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.96
PLN03118	211	Rab family protein; Provisional	99.96
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.96
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
PLN00223	181	ADP-ribosylation factor; Provisional	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.95
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.95
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.95
PTZ00133	182	ADP-ribosylation factor; Provisional	99.95
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.95
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.95
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.95
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.95
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.94
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.94
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.94
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.94
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.94
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.94
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.94
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.94
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.94
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.93
PLN00023	334	GTP-binding protein; Provisional	99.93
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.93
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.93
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.93
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.93
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.92
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.92
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.92
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.92
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.92
PRK15494	339	era GTPase Era; Provisional	99.91
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.91
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
PTZ00099	176	rab6; Provisional	99.9
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.89
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.89
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.89
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.89
COG1100	219	GTPase SAR1 and related small G proteins [General	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.88
PRK12298	390	obgE GTPase CgtA; Reviewed	99.88
PRK04213	201	GTP-binding protein; Provisional	99.88
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.87
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.87
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.87
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.87
PRK00089	292	era GTPase Era; Reviewed	99.87
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.87
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.87
PRK12297	424	obgE GTPase CgtA; Reviewed	99.87
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.86
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.86
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.86
cd00881	189	GTP_translation_factor GTP translation factor fami	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.85
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.85
PRK12296	500	obgE GTPase CgtA; Reviewed	99.85
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.84
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.84
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.84
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.84
COG0486	454	ThdF Predicted GTPase [General function prediction	99.84
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
PRK11058	426	GTPase HflX; Provisional	99.83
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.82
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.82
PRK05433	600	GTP-binding protein LepA; Provisional	99.82
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.82
PRK00093	435	GTP-binding protein Der; Reviewed	99.82
COG1160	444	Predicted GTPases [General function prediction onl	99.81
CHL00189	742	infB translation initiation factor 2; Provisional	99.81
PRK05306	787	infB translation initiation factor IF-2; Validated	99.81
KOG1673	205	consensus Ras GTPases [General function prediction	99.81
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.8
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.8
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.8
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.8
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.79
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.79
PRK10218	607	GTP-binding protein; Provisional	99.79
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.78
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.78
COG1160	444	Predicted GTPases [General function prediction onl	99.78
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.78
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.78
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.77
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.77
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.77
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.77
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
COG2229	187	Predicted GTPase [General function prediction only	99.75
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.75
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.75
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.75
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.74
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.74
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.74
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.73
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.73
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.72
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.72
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
COG0218	200	Predicted GTPase [General function prediction only	99.71
PRK12736	394	elongation factor Tu; Reviewed	99.71
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.7
PRK12735	396	elongation factor Tu; Reviewed	99.7
PRK04004	586	translation initiation factor IF-2; Validated	99.7
COG1084	346	Predicted GTPase [General function prediction only	99.69
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.69
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.67
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.67
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.67
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
PLN03126	478	Elongation factor Tu; Provisional	99.65
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.65
CHL00071	409	tufA elongation factor Tu	99.65
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.65
PRK13351	687	elongation factor G; Reviewed	99.64
PLN00043	447	elongation factor 1-alpha; Provisional	99.64
PRK00049	396	elongation factor Tu; Reviewed	99.64
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.63
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.62
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.62
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.61
COG2262	411	HflX GTPases [General function prediction only]	99.61
PTZ00141	446	elongation factor 1- alpha; Provisional	99.61
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.61
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.6
COG0536	369	Obg Predicted GTPase [General function prediction	99.6
PRK00007	693	elongation factor G; Reviewed	99.6
PRK09602	396	translation-associated GTPase; Reviewed	99.59
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.58
COG3596	296	Predicted GTPase [General function prediction only	99.57
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.57
PRK12739	691	elongation factor G; Reviewed	99.56
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.56
COG1163	365	DRG Predicted GTPase [General function prediction	99.56
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.54
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.53
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.53
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.53
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.52
PRK12740	668	elongation factor G; Reviewed	99.47
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.46
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.45
PRK09866	741	hypothetical protein; Provisional	99.45
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.44
KOG1145	683	consensus Mitochondrial translation initiation fac	99.43
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.42
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.42
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.42
KOG0090	238	consensus Signal recognition particle receptor, be	99.42
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.41
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.4
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.37
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.36
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.35
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.35
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.33
PTZ00416	836	elongation factor 2; Provisional	99.33
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.33
PRK13768	253	GTPase; Provisional	99.33
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.31
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.31
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.31
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.3
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.29
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.29
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.28
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.27
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.26
PTZ00258	390	GTP-binding protein; Provisional	99.26
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.25
PRK07560	731	elongation factor EF-2; Reviewed	99.23
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.22
PRK14845	1049	translation initiation factor IF-2; Provisional	99.22
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.22
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.21
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.2
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.19
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.18
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.17
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.17
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.17
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.15
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.14
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.14
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.12
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.11
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.11
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.09
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.09
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.08
KOG3887	347	consensus Predicted small GTPase involved in nucle	99.08
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.07
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.05
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.05
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.04
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.02
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.0
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.0
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.0
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	98.99
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.99
PRK09601	364	GTP-binding protein YchF; Reviewed	98.99
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.98
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.98
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.98
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.98
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.98
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	98.97
COG3276	447	SelB Selenocysteine-specific translation elongatio	98.97
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.97
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.97
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.97
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.96
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.95
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.95
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.94
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.94
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	98.94
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.93
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.93
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.92
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.92
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.92
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.91
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.91
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.9
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.9
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.9
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.9
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.9
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.89
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.89
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.89
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.89
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.89
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.89
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.89
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.89
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.88
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.88
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.88
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.88
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.88
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.88
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.88
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.87
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.87
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.87
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.87
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.87
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.87
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.87
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.87
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.86
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.86
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.86
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.86
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.85
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.85
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.85
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.85
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.85
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.85
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.84
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.84
PRK10908	222	cell division protein FtsE; Provisional	98.84
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.84
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.84
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.84
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.84
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.83
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.83
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.83
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.83
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.83
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.83
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.83
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.83
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.83
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.82
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.82
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.82
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.82
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.82
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.82
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.82
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.82
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.81
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.81
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.81
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.81
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.81
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.81
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.8
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.8
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.8
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.8
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.79
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.79
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
cd03246	173	ABCC_Protease_Secretion This family represents the	98.79
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.79
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.79
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.79
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.79
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.79
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.79
COG0488	530	Uup ATPase components of ABC transporters with dup	98.78
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.78
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.78
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.78
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.78
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.78
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.77
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	98.77
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.77
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.77
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.77
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.77
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.77
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.77
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.77
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.77
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.77
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.76
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.76
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.76
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.76
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.76
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.76
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.76
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.76
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.75
COG0488	530	Uup ATPase components of ABC transporters with dup	98.75
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.74
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.74
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.74
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.74
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.74
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.74
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.74
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.74
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.74
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.73
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.73
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.73
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.73
KOG0410	410	consensus Predicted GTP binding protein [General f	98.73
COG1123	539	ATPase components of various ABC-type transport sy	98.73
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.73
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.72
COG1161	322	Predicted GTPases [General function prediction onl	98.72
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.72
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.72
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.72
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.72
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.72
KOG1143	591	consensus Predicted translation elongation factor	98.72
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.71
COG4988	559	CydD ABC-type transport system involved in cytochr	98.71
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.71

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=1.1e-37  Score=233.93  Aligned_cols=217  Identities=99%  Similarity=1.560  Sum_probs=192.9

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      |++|+.+...++.+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+...+.
T Consensus         1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   80 (219)
T PLN03071          1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (219)
T ss_pred             CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence            78988888889999999999999999999999999999888899999998888887888889999999999999999999


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      .+++.++++++|||++++.+|..+..|+..+....++.|+++|+||+|+..+....+...++...++.++++||++|.|+
T Consensus        81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence            99999999999999999999999999999998777789999999999997655555555677777899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCC
Q 027593          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDD  217 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (221)
                      +++|.+|++.+........++.|...++....+....+..++.++.+....+.++++
T Consensus       161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (219)
T PLN03071        161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDD  217 (219)
T ss_pred             HHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            999999999998877777778888888888888889999998888887766655554

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=9.9e-37  Score=228.74  Aligned_cols=212  Identities=78%  Similarity=1.284  Sum_probs=189.0

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ...++.+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|+..+...+..++..++
T Consensus         4 ~~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~   83 (215)
T PTZ00132          4 MDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQ   83 (215)
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCC
Confidence            35677899999999999999999988999988888999999888888888888999999999999999888888999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ++++|||+++..+|..+..|...+.....+.|+++++||+|+.++....+...+....++.++++|+++|.|++++|.+|
T Consensus        84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~i  163 (215)
T PTZ00132         84 CAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWL  163 (215)
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999988877777899999999999976555555556677778899999999999999999999


Q ss_pred             HHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCcc
Q 027593          168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDA  219 (221)
Q Consensus       168 ~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (221)
                      ++++..+|.++++|||+..+.+..+|+...+...+.+++++.-++|++||++
T Consensus       164 a~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (215)
T PTZ00132        164 ARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDDL  215 (215)
T ss_pred             HHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCCC
Confidence            9999999999999999944444449999999999999999888898888763

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-36  Score=214.31  Aligned_cols=174  Identities=33%  Similarity=0.564  Sum_probs=159.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .-.+-+||.|+|.+|+|||+|+.||..+.|...+..|+|++....+..+++..+.+++|||+||++|++....|++++++
T Consensus         5 ~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahG   84 (205)
T KOG0084|consen    5 EYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   84 (205)
T ss_pred             ccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCe
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCce-EEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQ-YYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~-~~~~s~~~~~~i~~~~  164 (221)
                      +|+|||+++..||.++..|+.++.++. .+.|.++|+||||+.+ +.+..+ ...++..++++ ++++||+++.+++++|
T Consensus        85 ii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F  164 (205)
T KOG0084|consen   85 IIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAF  164 (205)
T ss_pred             EEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHH
Confidence            999999999999999999999999986 4679999999999976 445554 44889999999 9999999999999999


Q ss_pred             HHHHHHHhCCCCCccccC
Q 027593          165 LYLARKLAGDPNLHFVES  182 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~e  182 (221)
                      ..|+..+..+.......+
T Consensus       165 ~~la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  165 LTLAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHHHhcccCCCCC
Confidence            999999988766554444

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.5e-35  Score=200.15  Aligned_cols=169  Identities=31%  Similarity=0.540  Sum_probs=155.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .-..+||+++|.+|+|||+|+.+|+.+.+.+....++|++...+.+.+++....+.+|||+|+++|+.+...|++.++++
T Consensus         8 ~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGi   87 (209)
T KOG0080|consen    8 YDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGI   87 (209)
T ss_pred             cceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCcee
Confidence            44569999999999999999999999999988888999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      |+|||++.+.+|.++..|+.++.-++.  +.-.++|+||.|.+. +.+. .+.+.+++.+++.|+++||++.++++.+|.
T Consensus        88 IlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Fe  167 (209)
T KOG0080|consen   88 ILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFE  167 (209)
T ss_pred             EEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHH
Confidence            999999999999999999999988864  455679999999873 4443 456799999999999999999999999999


Q ss_pred             HHHHHHhCCCCCc
Q 027593          166 YLARKLAGDPNLH  178 (221)
Q Consensus       166 ~l~~~l~~~~~~~  178 (221)
                      .++.++++.|.+.
T Consensus       168 elveKIi~tp~l~  180 (209)
T KOG0080|consen  168 ELVEKIIETPSLW  180 (209)
T ss_pred             HHHHHHhcCcchh
Confidence            9999999988765

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-35  Score=205.58  Aligned_cols=165  Identities=33%  Similarity=0.601  Sum_probs=151.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|..++|||||+-||..+.|.....+|+|..+..+++.++...+.+.+|||+|+++|.++.++|+++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|||+++.+||..++.|+..+....+ +.-+.+|+||+|+.. +.+.. +...++...+..|+++||+++.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            99999999999999999999988754 556678999999987 55544 5568899999999999999999999999999


Q ss_pred             HHHHhCCC
Q 027593          168 ARKLAGDP  175 (221)
Q Consensus       168 ~~~l~~~~  175 (221)
                      ++.+....
T Consensus       163 a~~lp~~~  170 (200)
T KOG0092|consen  163 AEKLPCSD  170 (200)
T ss_pred             HHhccCcc
Confidence            99987644

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-34  Score=206.10  Aligned_cols=168  Identities=30%  Similarity=0.577  Sum_probs=156.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+-+||+++|.+|||||+++.+|..+.+...+..++|++....++..++..+.+++|||+||+++......|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +++|||+++..||+++..|+..+.++.+ ..|.++|+||+|+.. +++..+ ..+++..+++.|+++||++|.||.++|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            9999999999999999999999999864 899999999999986 555555 4588999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 027593          166 YLARKLAGDPN  176 (221)
Q Consensus       166 ~l~~~l~~~~~  176 (221)
                      .|++.+..+..
T Consensus       168 ~La~~i~~k~~  178 (207)
T KOG0078|consen  168 SLARDILQKLE  178 (207)
T ss_pred             HHHHHHHhhcc
Confidence            99999986443

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-34  Score=202.00  Aligned_cols=170  Identities=31%  Similarity=0.554  Sum_probs=153.6

Q ss_pred             CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc
Q 027593            5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (221)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   84 (221)
                      .....+.+++||+++|..++||||||++|+.+.+...|..|+|++.-..++.+.+..+++++|||+||++|+.+...|++
T Consensus        14 ~~~~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~R   93 (221)
T KOG0094|consen   14 ATFGAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR   93 (221)
T ss_pred             cccCccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhcc
Confidence            34566788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCCh
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      ++.++|+|||+++..||++...|++.......  +.-+++|+||.|+.+ ++...+ ....+..++..|+++|++.|.|+
T Consensus        94 ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NV  173 (221)
T KOG0094|consen   94 DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENV  173 (221)
T ss_pred             CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCH
Confidence            99999999999999999999999999988764  355679999999976 455444 44678888999999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 027593          161 EKPFLYLARKLAGD  174 (221)
Q Consensus       161 ~~~~~~l~~~l~~~  174 (221)
                      +++|..|+.++...
T Consensus       174 k~lFrrIaa~l~~~  187 (221)
T KOG0094|consen  174 KQLFRRIAAALPGM  187 (221)
T ss_pred             HHHHHHHHHhccCc
Confidence            99999999877553

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.2e-33  Score=207.06  Aligned_cols=188  Identities=82%  Similarity=1.318  Sum_probs=159.4

Q ss_pred             EcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh
Q 027593           19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR   98 (221)
Q Consensus        19 ~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~   98 (221)
                      +|.+|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+|||+|++.+...+..++++++++++|||++++
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999988888889999999888888888899999999999999999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCc
Q 027593           99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~  178 (221)
                      .+|..+..|+..+....++.|+++|+||+|+..+.+..+...++...++.++++||++|.|++++|.+|++.+.....+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  160 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  160 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence            99999999999998877789999999999997655555556777788899999999999999999999999998765544


Q ss_pred             cccCCCCCCcccccchHHHHHHHHHHHH
Q 027593          179 FVESPALAPPEVQIDLAAQQQHEAELAA  206 (221)
Q Consensus       179 ~~~ep~~~~~~~~~~~~~~~~~~~~~~~  206 (221)
                      ....|...++....++...+...+.++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (200)
T smart00176      161 FVAMPALAPPEVVMDPALAAQYEHDLEV  188 (200)
T ss_pred             eccCcccCCcccccChhhhhhhhHHHHH
Confidence            4455555545444455555555554443

Ran is involved in the active transport of proteins through nuclear pores.

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=3.4e-33  Score=204.57  Aligned_cols=165  Identities=23%  Similarity=0.502  Sum_probs=147.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|..|||||||+.+|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.++++++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            46999999999999999999999988888888888888887788888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |||++++.+|.++..|+..+....++.|+++|+||+|+.. +.+.. +...++...++.++++||++|.|++++|.+|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999999987778899999999999965 33433 345777888999999999999999999999999


Q ss_pred             HHhCCCC
Q 027593          170 KLAGDPN  176 (221)
Q Consensus       170 ~l~~~~~  176 (221)
                      .+..+..
T Consensus       165 ~i~~~~~  171 (189)
T cd04121         165 IVLMRHG  171 (189)
T ss_pred             HHHHhcC
Confidence            8875443

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-34  Score=197.98  Aligned_cols=164  Identities=32%  Similarity=0.551  Sum_probs=153.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      -+.+|+.++|..|+|||+|+.+|....|.+.+..|+|+++-...+++++..+.+++|||+|++.+++....|++.+.+++
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|||++.+++|..+..|+..+.++. +++-+++++||+|+.. +.+..+ ...+++++++.++++||+++.+++++|..+
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT  163 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999984 8999999999999976 445544 458999999999999999999999999999


Q ss_pred             HHHHhCC
Q 027593          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      ++.+...
T Consensus       164 a~~Iy~~  170 (216)
T KOG0098|consen  164 AKEIYRK  170 (216)
T ss_pred             HHHHHHH
Confidence            9988764

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.8e-33  Score=196.25  Aligned_cols=215  Identities=76%  Similarity=1.214  Sum_probs=202.8

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      |.+|+.+   ...++++++|..|.||||++++++.+.|...+.++.|...++....-+.+.+++..|||+|++.+.....
T Consensus         1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd   77 (216)
T KOG0096|consen    1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD   77 (216)
T ss_pred             CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence            6776655   7889999999999999999999999999999999999999998777776789999999999999999999


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      .++-+..+.+++||++.+....++..|...+...+.++|+++++||.|.+.++...+...+.+..++.+++.|++++.+.
T Consensus        78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999999999999999999999999999888778888888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027593          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD  218 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      +.-|.++++.+..+|.+.++..|...||+...|...+++.+..+.++...++|++||+
T Consensus       158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~  215 (216)
T KOG0096|consen  158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDK  215 (216)
T ss_pred             ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999983

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=1.8e-32  Score=198.65  Aligned_cols=158  Identities=28%  Similarity=0.485  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|+|||||+.+|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6999999999999999999999999888889998666 445677888899999999999999999999999999999999


Q ss_pred             eCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-----------ccH-HHHHHHHhcCc-eEEEeecCCCCC
Q 027593           94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKA-KQVTFHRKKNL-QYYEISAKSNYN  159 (221)
Q Consensus        94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----------~~~-~~~~~~~~~~~-~~~~~s~~~~~~  159 (221)
                      |++++.||.++ ..|+..+....++.|+++|+||+|+.+..           +.. +...++...++ .++++||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 68999988777789999999999996531           223 34577777787 699999999999


Q ss_pred             hHHHHHHHHHHHh
Q 027593          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 i~~~~~~l~~~l~  172 (221)
                      ++++|..+++.+.
T Consensus       161 V~~~F~~~~~~~~  173 (176)
T cd04133         161 VKAVFDAAIKVVL  173 (176)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999764

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=3.1e-32  Score=196.45  Aligned_cols=164  Identities=87%  Similarity=1.432  Sum_probs=146.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.+........++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888889888888777777888899999999999999888889999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |+++..+|..+..|...+.....+.|+++|+||+|+.......+...+....++.++++||++|.|++++|.+|++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            99999999999999999988777899999999999976555455556667778899999999999999999999999987


Q ss_pred             CCCC
Q 027593          174 DPNL  177 (221)
Q Consensus       174 ~~~~  177 (221)
                      .|.+
T Consensus       161 ~~~~  164 (166)
T cd00877         161 NPNL  164 (166)
T ss_pred             cccc
Confidence            7654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=6.9e-33  Score=192.52  Aligned_cols=166  Identities=31%  Similarity=0.638  Sum_probs=150.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ...-+||.++|.+|+|||||+|+|+..+|...+..++|.+.-.+.+.+++..+.+++|||+|+++|.++...+++.+|.+
T Consensus         6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcC   85 (210)
T KOG0394|consen    6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCC   85 (210)
T ss_pred             cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceE
Confidence            34569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCc---ccccHH-HHHHHHhc-CceEEEeecCCCCC
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKAK-QVTFHRKK-NLQYYEISAKSNYN  159 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~---~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~  159 (221)
                      ++|||+.++.||+++..|+..+....     ...|+|+++||.|+..   +++..+ ...+|... +++||++||+...+
T Consensus        86 vlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~N  165 (210)
T KOG0394|consen   86 VLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATN  165 (210)
T ss_pred             EEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccccc
Confidence            99999999999999999999987764     2679999999999966   566654 45777765 57999999999999


Q ss_pred             hHHHHHHHHHHHhCCC
Q 027593          160 FEKPFLYLARKLAGDP  175 (221)
Q Consensus       160 i~~~~~~l~~~l~~~~  175 (221)
                      +..+|..+++..+.+.
T Consensus       166 V~~AFe~ia~~aL~~E  181 (210)
T KOG0394|consen  166 VDEAFEEIARRALANE  181 (210)
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999887654

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=3.2e-32  Score=198.51  Aligned_cols=161  Identities=24%  Similarity=0.411  Sum_probs=141.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ...+||+++|.+|+|||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..+++++++++
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~i   81 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL   81 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEE
Confidence            45789999999999999999999999998888888886553 56778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeec
Q 027593           91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~  154 (221)
                      +|||++++.||.++ ..|...+....++.|+++|+||+|+..             +.+.. +..+++...++ +|+++||
T Consensus        82 lvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SA  161 (182)
T cd04172          82 ICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSA  161 (182)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCc
Confidence            99999999999997 799999988878899999999999853             12333 45578888885 8999999


Q ss_pred             CCCCC-hHHHHHHHHHHHh
Q 027593          155 KSNYN-FEKPFLYLARKLA  172 (221)
Q Consensus       155 ~~~~~-i~~~~~~l~~~l~  172 (221)
                      ++|.| ++++|..++++..
T Consensus       162 k~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         162 LQSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            99998 9999999998643

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=1.7e-33  Score=188.71  Aligned_cols=161  Identities=33%  Similarity=0.594  Sum_probs=151.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      -++.+|+|.+|+|||+|+-+|..+.|...|..++|++....++.+.|..+.++|||++|+++|+.....|++..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc--HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ||+++.+||.+...|++.+...++..|-++|+||+|..++.+.  .+...++...++.+|++|++.+.+++..|.-|.+.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999876543  35678999999999999999999999999999987


Q ss_pred             HhC
Q 027593          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +.+
T Consensus       168 vl~  170 (198)
T KOG0079|consen  168 VLQ  170 (198)
T ss_pred             HHH
Confidence            754

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=4.6e-32  Score=200.36  Aligned_cols=161  Identities=29%  Similarity=0.601  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +.|+++|..|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..++++++++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            36899999999999999999999998888899998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhc-CceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |++++.+|.++..|+..+.... .+.|+++|+||+|+.. +.+..+ ..+++... ++.++++||++|.|++++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999999887654 5799999999999964 444433 33556554 789999999999999999999999


Q ss_pred             HHhCC
Q 027593          170 KLAGD  174 (221)
Q Consensus       170 ~l~~~  174 (221)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=5.2e-32  Score=199.45  Aligned_cols=162  Identities=31%  Similarity=0.538  Sum_probs=139.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |..+||+++|..|||||||+.+|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.++..+..+++++++++
T Consensus         1 ~~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~i   79 (191)
T cd01875           1 MQSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFI   79 (191)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEE
Confidence            45699999999999999999999999998888889886553 44567888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcC-ceEEEeec
Q 027593           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~-~~~~~~s~  154 (221)
                      +|||++++.||+++. .|...+....++.|+++|+||+|+.+..             +. .+...++...+ ++++++||
T Consensus        80 lvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA  159 (191)
T cd01875          80 ICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA  159 (191)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence            999999999999996 6888777666789999999999996431             12 23345667777 58999999


Q ss_pred             CCCCChHHHHHHHHHHHhC
Q 027593          155 KSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~  173 (221)
                      ++|.|++++|..+++.+..
T Consensus       160 k~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         160 LNQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998764

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.5e-31  Score=194.64  Aligned_cols=159  Identities=23%  Similarity=0.399  Sum_probs=138.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|++|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++++++++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            379999999999999999999999998888888876653 5677888889999999999999999999999999999999


Q ss_pred             EeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeecCC
Q 027593           93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~~~  156 (221)
                      ||++++.||.++ ..|...+....++.|+++|+||+|+.+             +.+.. +..+++...++ +|+++||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999996 799999988878899999999999853             12333 45578888886 899999999


Q ss_pred             CCC-hHHHHHHHHHHHh
Q 027593          157 NYN-FEKPFLYLARKLA  172 (221)
Q Consensus       157 ~~~-i~~~~~~l~~~l~  172 (221)
                      |.+ ++++|..++++..
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.4e-31  Score=201.03  Aligned_cols=163  Identities=21%  Similarity=0.353  Sum_probs=142.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ...+||+++|..|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..+++++++++
T Consensus        11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vI   89 (232)
T cd04174          11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVL   89 (232)
T ss_pred             eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEE
Confidence            45689999999999999999999999998888889886664 45778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEEEeec
Q 027593           91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~~~s~  154 (221)
                      +|||+++..+|..+ ..|...+....++.|+++|+||+|+..             +.+.. +..+++...++ .|+++||
T Consensus        90 lVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSA  169 (232)
T cd04174          90 LCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSA  169 (232)
T ss_pred             EEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccC
Confidence            99999999999984 799999988777899999999999853             23333 45688888898 6999999


Q ss_pred             CCCC-ChHHHHHHHHHHHhCC
Q 027593          155 KSNY-NFEKPFLYLARKLAGD  174 (221)
Q Consensus       155 ~~~~-~i~~~~~~l~~~l~~~  174 (221)
                      ++|. |++++|..+++.+.++
T Consensus       170 ktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         170 FTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             CcCCcCHHHHHHHHHHHHHHh
Confidence            9997 8999999999987653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=3.9e-31  Score=193.14  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|..|||||||+++|+.+.+...+.++.|.++....+.+++..+.+.+||++|++.+...+..++++++++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998888999998888888888888899999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-------cccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      |++++.+|.++..|+..+....+ ..| ++|+||+|+...       ....+...++...+++++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998877644 455 688999998521       112233456677789999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027593          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      ++++.+..-|
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999886533

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4.8e-31  Score=190.30  Aligned_cols=161  Identities=34%  Similarity=0.558  Sum_probs=141.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999988888888888888777778888889999999999999999889999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      ||++++.+|..+..|+..+.... ++.|+++|+||+|+... ... .+..+++...+++++++||++|.|++++|..+++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876653 57899999999999653 333 3445677777899999999999999999999998


Q ss_pred             HHhC
Q 027593          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            7753

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.98  E-value=6.4e-31  Score=195.28  Aligned_cols=162  Identities=35%  Similarity=0.599  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+|||+|++.+...+..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            689999999999999999999998888888899988877777777 7789999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcC-ceEEEeecCCCCChHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~  164 (221)
                      ||++++.+|..+..|...+....     ...|+++|+||+|+.. ..... +..+++...+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            99999999999999988776532     4689999999999973 33333 4456777777 689999999999999999


Q ss_pred             HHHHHHHhCCC
Q 027593          165 LYLARKLAGDP  175 (221)
Q Consensus       165 ~~l~~~l~~~~  175 (221)
                      .+|++.+....
T Consensus       161 ~~l~~~l~~~~  171 (201)
T cd04107         161 RFLVKNILAND  171 (201)
T ss_pred             HHHHHHHHHhc
Confidence            99999887654

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04124 RabL2 RabL2 subfamily

Probab=99.98  E-value=1.1e-30  Score=187.50  Aligned_cols=159  Identities=31%  Similarity=0.527  Sum_probs=138.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+++++.+.+.+...++.+.+.......+++..+.+.+|||+|++.+...+..+++.++++++|+
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777777777777777888899999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |++++.++..+..|+..+....++.|+++++||+|+... ...+...++...+++++++|+++|.|++++|..+++.+..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998777678999999999998532 2233345566667899999999999999999999987654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.98  E-value=1.1e-30  Score=188.55  Aligned_cols=162  Identities=30%  Similarity=0.573  Sum_probs=142.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|+|||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            46999999999999999999999999988888999988877778888888999999999999988888889999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.+|..+..|+..+.... .+.|+++++||+|+.+. .... +....+...+++++++|+++|.|++++|.+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887764 47899999999999753 3332 34466677788999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04110 Rab35 Rab35 subfamily

Probab=99.98  E-value=1.3e-30  Score=193.28  Aligned_cols=165  Identities=32%  Similarity=0.549  Sum_probs=145.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|..+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++.++++++
T Consensus         4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii   83 (199)
T cd04110           4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI   83 (199)
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence            35799999999999999999999988887778888888888778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +|||++++.+|..+..|+..+....+..|+++|+||+|+.... .. .+...++...+.+++++|+++|.|++++|.+|.
T Consensus        84 lv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~  163 (199)
T cd04110          84 VVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCIT  163 (199)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHH
Confidence            9999999999999999999988777789999999999997532 23 334456667789999999999999999999999


Q ss_pred             HHHhCCC
Q 027593          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      +.+....
T Consensus       164 ~~~~~~~  170 (199)
T cd04110         164 ELVLRAK  170 (199)
T ss_pred             HHHHHhh
Confidence            9987643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04117 Rab15 Rab15 subfamily

Probab=99.98  E-value=1.1e-30  Score=187.46  Aligned_cols=157  Identities=29%  Similarity=0.547  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|+|||||+++|+.+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.++++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888889888888778888888899999999999999988899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |++++.+|..+..|+..+..... +.|+++|+||+|+... .+. .+...++...+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            99999999999999998876653 6899999999998643 333 34456677778999999999999999999999874

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.98  E-value=1.1e-30  Score=189.25  Aligned_cols=160  Identities=31%  Similarity=0.500  Sum_probs=138.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|+..+...+..++..++++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            48999999999999999999999998877778887444 44567788889999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ||++++.+|..+..|...+....  ++.|+++|+||+|+.+ +.+.. +...++...+++++++||++|.|++++|.+|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            99999999999998887776642  5799999999999864 33443 34467777889999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       161 ~~~~~  165 (172)
T cd04141         161 REIRR  165 (172)
T ss_pred             HHHHH
Confidence            98775

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.98  E-value=1.7e-30  Score=187.41  Aligned_cols=160  Identities=33%  Similarity=0.610  Sum_probs=140.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.++++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999998888777788888888888888888889999999999999988889999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      ||++++.+|..+..|+..+.... ++.|+++++||+|+... ... .+...++...+++++++|+++|.|++++|..|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999887765 57899999999998643 333 3345666777899999999999999999999999


Q ss_pred             HHh
Q 027593          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=99.98  E-value=2.2e-30  Score=186.72  Aligned_cols=159  Identities=28%  Similarity=0.583  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|+..+...+..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999888777888887777777777777899999999999999988999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..+|..+..|+..+.... ...|+++|+||+|+.+.. .. .+..+++...+++++++|+++|.|++++|.++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999887765 478999999999996532 22 33445667778899999999999999999999987


Q ss_pred             Hh
Q 027593          171 LA  172 (221)
Q Consensus       171 l~  172 (221)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            64

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.97  E-value=2.5e-30  Score=187.90  Aligned_cols=157  Identities=25%  Similarity=0.435  Sum_probs=132.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+++|+.+.+...+.++.+..+. ....+.+..+.+.+|||+|++.+...+..++++++++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999998888888876554 34567777899999999999999999889999999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcC-ceEEEeecCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |++++.+|.++. .|...+....++.|+++|+||+|+...             .+.. +..+++...+ +.++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            999999999997 598888776678999999999998542             1222 2234555665 68999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027593          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~~i~~~~~~l~~~l  171 (221)
                      .|++++|..++++.
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998853

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.8e-31  Score=179.98  Aligned_cols=169  Identities=30%  Similarity=0.536  Sum_probs=152.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+-+|++++|+.|+|||+|+.+|+.+++..+..+++|++.....+.+.+..+.+++|||+|+++|++..+.|++.+-+.+
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAl   86 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL   86 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceE
Confidence            34689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|||++++++|..+..|+...+... +++-+++++||.|+.. +++.. +...++....+.+.++|+++|++++++|...
T Consensus        87 LVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c  166 (214)
T KOG0086|consen   87 LVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  166 (214)
T ss_pred             EEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHH
Confidence            9999999999999999999988874 5788899999999975 45555 4557888888899999999999999999999


Q ss_pred             HHHHhCCCCCcc
Q 027593          168 ARKLAGDPNLHF  179 (221)
Q Consensus       168 ~~~l~~~~~~~~  179 (221)
                      ++.+..+-+.-.
T Consensus       167 ~~tIl~kIE~GE  178 (214)
T KOG0086|consen  167 ARTILNKIESGE  178 (214)
T ss_pred             HHHHHHHHhhcC
Confidence            999887654433

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.97  E-value=2.4e-30  Score=186.69  Aligned_cols=159  Identities=27%  Similarity=0.545  Sum_probs=140.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+...+..+++.++++++|+
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888899998888888888888999999999999998888889999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc------CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      |++++.+|..+..|+..+....      .+.|+++|+||+|+.. .....+ ...++...+++++++|+++|.|++++|.
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999887764      3689999999999963 333333 3356677788999999999999999999


Q ss_pred             HHHHHHh
Q 027593          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-31  Score=178.49  Aligned_cols=164  Identities=34%  Similarity=0.606  Sum_probs=148.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      .-+||+++|..|+|||+|+++|..|.|++....++|++...+++.+++..+.+++|||+|++++++....|++.++++++
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +||++...+|.-+..|+..+..+. ...-.|+|+||.|+.++ +++.. ..++.....+.|.++|++...+++++|..++
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            999999999999999999998875 45667899999999875 44443 3367777888999999999999999999999


Q ss_pred             HHHhCCC
Q 027593          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      ..+....
T Consensus       166 ~rli~~a  172 (213)
T KOG0095|consen  166 CRLISEA  172 (213)
T ss_pred             HHHHHHH
Confidence            8886643

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.5e-30  Score=185.06  Aligned_cols=167  Identities=32%  Similarity=0.514  Sum_probs=154.1

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ..-.+.+||.++|.+|+|||-|+.+|..+.|......|+|++....++.+++..+..++|||+||++|+.....|++.+.
T Consensus         9 ~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAv   88 (222)
T KOG0087|consen    9 EEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAV   88 (222)
T ss_pred             cccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccc
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++++|||++...+|+++..|+.+++.+. ++.++++|+||+|+.+ +.+.. +...++...++.++++||+.+.+++.+|
T Consensus        89 GAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF  168 (222)
T KOG0087|consen   89 GALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAF  168 (222)
T ss_pred             eeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHH
Confidence            9999999999999999999999999997 6899999999999986 44444 4568899999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027593          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      ..+...+...
T Consensus       169 ~~~l~~I~~~  178 (222)
T KOG0087|consen  169 ERVLTEIYKI  178 (222)
T ss_pred             HHHHHHHHHH
Confidence            9988887653

>cd04127 Rab27A Rab27a subfamily

Probab=99.97  E-value=2.6e-30  Score=188.84  Aligned_cols=162  Identities=32%  Similarity=0.558  Sum_probs=140.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec----------CeEEEEEEEeCCCcccccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~D~~g~~~~~~~~~~   81 (221)
                      +.+||+++|++|||||||++++..+.+...+.++.+.++......+.          +..+.+.+||++|++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999988888888887776665543          45689999999999999999999


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      ++++++++++|||+++..+|..+..|+..+....  ++.|+++|+||+|+.. +.... +..+++...+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999887653  5789999999999865 33333 345677788899999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027593          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~  173 (221)
                      .|++++|..|++.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.97  E-value=4.8e-30  Score=186.25  Aligned_cols=156  Identities=28%  Similarity=0.498  Sum_probs=132.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+.+++.+.+...+.++.+. .......+++..+.+.+|||+|++.+...+..++.+++++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCccee-eeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            79999999999999999999999998888888763 33445667888899999999999999999999999999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcC-ceEEEeecCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |++++.+|.++. .|...+....++.|+++|+||+|+.+..             +. .+..+++...+ +.++++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999986 6888777666789999999999995421             22 23345666677 48999999999


Q ss_pred             CChHHHHHHHHHH
Q 027593          158 YNFEKPFLYLARK  170 (221)
Q Consensus       158 ~~i~~~~~~l~~~  170 (221)
                      .|++++|..+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999874

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>PTZ00369 Ras-like protein; Provisional

Probab=99.97  E-value=4.7e-30  Score=188.85  Aligned_cols=162  Identities=28%  Similarity=0.536  Sum_probs=138.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ++++||+++|.+|||||||+++|+.+.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+...+..+++.+++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            5679999999999999999999999888777778877555 456777888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||+++..+|..+..|...+....  ++.|+++++||+|+... .+.. +...++...+++++++||++|.|++++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999988876653  47899999999998642 2232 334566667889999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |++.+..
T Consensus       162 l~~~l~~  168 (189)
T PTZ00369        162 LVREIRK  168 (189)
T ss_pred             HHHHHHH
Confidence            9998764

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.97  E-value=5e-30  Score=184.21  Aligned_cols=158  Identities=36%  Similarity=0.701  Sum_probs=145.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|||||||+++|..+.+...+.++.|.+.......+++..+.+.+||++|++.+...+..++.+++++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ++++.||..+..|+..+....+ ..|+++++||+|+.. +.+.. +...++..++.+|+++|++++.++.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999998887 699999999999986 45544 45578888899999999999999999999999987


Q ss_pred             h
Q 027593          172 A  172 (221)
Q Consensus       172 ~  172 (221)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04136 Rap_like Rap-like subfamily

Probab=99.97  E-value=4.2e-30  Score=184.70  Aligned_cols=158  Identities=32%  Similarity=0.578  Sum_probs=133.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+ ......+.+++..+.+.+|||+|++++...+..+++.++++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            48999999999999999999998888777777766 33445567778888999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ||+++..+|..+..|...+....  .+.|+++++||+|+.. +.... +...+....+.+++++||++|.|++++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887653  4789999999999864 33333 23355666678999999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd04175 Rap1 Rap1 subgroup

Probab=99.97  E-value=5.7e-30  Score=184.31  Aligned_cols=159  Identities=30%  Similarity=0.545  Sum_probs=135.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|.+|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.++++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            58999999999999999999998888777777777554 34567777889999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ||+++..+|..+..|...+....  .+.|+++++||+|+.... ...+ ...++...+++++++||++|.|++++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988886543  579999999999996532 2322 3356677789999999999999999999999


Q ss_pred             HHHh
Q 027593          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8764

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.97  E-value=5.2e-30  Score=184.10  Aligned_cols=157  Identities=31%  Similarity=0.669  Sum_probs=137.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +||+++|.+|+|||||+++++.+.+...+.++.+.++......+.  +..+.+.+|||||++.+...+..+++.++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988888888888888877777666  678899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |||++++.+|..+..|+..+.....+.|+++|+||+|+.. ..+.. +...++...+++++++|+++|.|++++|.+|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999998887777899999999999864 33333 344667778899999999999999999999876


Q ss_pred             H
Q 027593          170 K  170 (221)
Q Consensus       170 ~  170 (221)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            3

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=8e-31  Score=175.65  Aligned_cols=164  Identities=26%  Similarity=0.534  Sum_probs=149.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+|+.++|...+|||+|+.+|....+.+.+-.+.|++...+++.-....+.+++|||+|+++++.+...+++++.++|+
T Consensus        20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgfiL   99 (193)
T KOG0093|consen   20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   99 (193)
T ss_pred             ceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceEEE
Confidence            35799999999999999999999999999999999999999988777788999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +||++|.+||..+..|...+...+ .+.|+|+++||||+.... +..+ ...++..+|..||++|++.+.+++++|..++
T Consensus       100 myDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~lv  179 (193)
T KOG0093|consen  100 MYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFERLV  179 (193)
T ss_pred             EEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHHHH
Confidence            999999999999999999988776 689999999999998643 4444 5688999999999999999999999999999


Q ss_pred             HHHhCCC
Q 027593          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      ..+....
T Consensus       180 ~~Ic~km  186 (193)
T KOG0093|consen  180 DIICDKM  186 (193)
T ss_pred             HHHHHHh
Confidence            9887643

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.97  E-value=6.4e-30  Score=191.10  Aligned_cols=161  Identities=24%  Similarity=0.432  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+|+|.+|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.|...+..++..+|++++||
T Consensus         2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvf   80 (222)
T cd04173           2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICF   80 (222)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEE
Confidence            79999999999999999999999998888888886654 46778888999999999999999999999999999999999


Q ss_pred             eCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593           94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      |++++.+|.++ ..|...+....++.|+++|+||+|+...             .+.. +...++...++ .|++|||+++
T Consensus        81 dis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~~  160 (222)
T cd04173          81 DISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRSS  160 (222)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCcC
Confidence            99999999998 4788777766778999999999998542             1222 34467777785 8999999998


Q ss_pred             C-ChHHHHHHHHHHHhCCC
Q 027593          158 Y-NFEKPFLYLARKLAGDP  175 (221)
Q Consensus       158 ~-~i~~~~~~l~~~l~~~~  175 (221)
                      . |++++|...+++.....
T Consensus       161 ~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         161 ERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CcCHHHHHHHHHHHHHhcc
Confidence            8 59999999999876543

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.97  E-value=8.5e-30  Score=184.32  Aligned_cols=159  Identities=28%  Similarity=0.461  Sum_probs=137.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|.+|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||+|++.+...+..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988889999988887788888888999999999999999999999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccc---cH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV---KA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~---~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ++++.++..+..|+..+....  ...|+++|+||.|+.....   .. +...++...+++++++||++|.|++++|..|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876542  3578999999999854321   12 23356667788999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            97753

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04134 Rho3 Rho3 subfamily

Probab=99.97  E-value=1e-29  Score=187.02  Aligned_cols=158  Identities=31%  Similarity=0.509  Sum_probs=133.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+...+..++..++++++|||
T Consensus         2 kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~d   80 (189)
T cd04134           2 KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFS   80 (189)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEEE
Confidence            8999999999999999999999988777778775543 455667778999999999999999998999999999999999


Q ss_pred             CCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-------------cH-HHHHHHHhcC-ceEEEeecCCCC
Q 027593           95 VTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KA-KQVTFHRKKN-LQYYEISAKSNY  158 (221)
Q Consensus        95 ~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-------------~~-~~~~~~~~~~-~~~~~~s~~~~~  158 (221)
                      ++++.+|..+. .|+..+....++.|+++|+||+|+.....             .. +...++...+ +.++++||++|.
T Consensus        81 v~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~  160 (189)
T cd04134          81 VDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLNR  160 (189)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcCC
Confidence            99999999886 68888887777899999999999865321             11 2334555555 689999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027593          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~  173 (221)
                      |++++|.+|++.+..
T Consensus       161 ~v~e~f~~l~~~~~~  175 (189)
T cd04134         161 GVNEAFTEAARVALN  175 (189)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            999999999998764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=1e-29  Score=182.34  Aligned_cols=158  Identities=30%  Similarity=0.565  Sum_probs=134.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..+++.++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999998888777777776444 44566777788899999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      ||+++..+|.++..|...+....  .+.|+++|+||+|+..+.... +....+...+++++++|+++|.|++++|.++++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999988888887653  478999999999997654443 334566677889999999999999999999987


Q ss_pred             HH
Q 027593          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=1.4e-29  Score=183.37  Aligned_cols=160  Identities=32%  Similarity=0.618  Sum_probs=138.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ...+||+++|++|||||||+++|+.+.+.+.+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+++++
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i   82 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL   82 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence            45699999999999999999999999888877788888777777888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccH-HHHHHHHhcC-ceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~  163 (221)
                      +|||++++.+|..+..|...+....     .+.|+++++||+|+..+.... +..+++...+ .+++++||++|.|+.++
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~  162 (170)
T cd04116          83 LTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAA  162 (170)
T ss_pred             EEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHH
Confidence            9999999999999999988776543     368999999999997554444 3446666666 48999999999999999


Q ss_pred             HHHHHHH
Q 027593          164 FLYLARK  170 (221)
Q Consensus       164 ~~~l~~~  170 (221)
                      |..+++.
T Consensus       163 ~~~~~~~  169 (170)
T cd04116         163 FEEAVRR  169 (170)
T ss_pred             HHHHHhh
Confidence            9999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=1.4e-29  Score=189.84  Aligned_cols=161  Identities=30%  Similarity=0.510  Sum_probs=139.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ..+.+.+|||+|++.+...+..+++.+|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999888888888999888877777754 578999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ||++++.+|..+..|...+....    .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999887764    2467999999999964 33333 344677777899999999999999999999


Q ss_pred             HHHHHhCC
Q 027593          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988753

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=1.5e-29  Score=181.98  Aligned_cols=158  Identities=29%  Similarity=0.547  Sum_probs=133.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|.+|+|||||+++++.+.+...+.++.+ ........+++..+.+.+|||+|++.+...+..++++++++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            58999999999999999999999988877766665 44455677777788999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ||+++..+|.++..|...+....  .+.|+++|+||+|+... .... +...++...+++++++||++|.|+.++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887653  57999999999998542 2222 33455556678999999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=1.9e-29  Score=181.77  Aligned_cols=160  Identities=34%  Similarity=0.600  Sum_probs=139.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..++..++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999888887778888888888888888888899999999999988888899999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|..+..|+..+..... +.|+++|+||+|+.. +.... +...++...++.++++||++|.|++++|.+|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998877664 589999999999865 33333 34456666788999999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            764

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=1.9e-29  Score=181.76  Aligned_cols=159  Identities=33%  Similarity=0.599  Sum_probs=137.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|+|||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999888887778888888777778888877899999999999998888899999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |+|++++.+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+. .++++|+++|.|++++|.++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999887654 57899999999998653 3232 34456666665 78999999999999999999


Q ss_pred             HHH
Q 027593          168 ARK  170 (221)
Q Consensus       168 ~~~  170 (221)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=2.2e-29  Score=185.63  Aligned_cols=162  Identities=29%  Similarity=0.585  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+++|++|||||||+++|+.+.+.. .+.++.+.++......+++..+.+.+|||||+..+...+..+++.++++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            589999999999999999998888753 5667777777776778888889999999999999988888899999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      +|+++..+|.++..|+..+.... ...|+++|+||+|+.. +... .+...+....+++++++|+++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999888765 3789999999999963 3333 3344666777889999999999999999999999


Q ss_pred             HHhCCC
Q 027593          170 KLAGDP  175 (221)
Q Consensus       170 ~l~~~~  175 (221)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987664

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.97  E-value=4.2e-29  Score=180.52  Aligned_cols=161  Identities=32%  Similarity=0.562  Sum_probs=140.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||++|++.+......+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            45899999999999999999999888877777888888888888888888999999999999988888889999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|++++.+|..+..|+..+.... ++.|+++|+||.|+.. ..... +...++...++.++++|++++.|++++|..++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887653 6799999999999864 33333 33456677789999999999999999999999


Q ss_pred             HHHh
Q 027593          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       163 ~~~~  166 (168)
T cd01866         163 KEIY  166 (168)
T ss_pred             HHHH
Confidence            8764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=2.5e-29  Score=184.86  Aligned_cols=161  Identities=32%  Similarity=0.602  Sum_probs=140.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||++|+..+...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887778888888888888888888899999999999999888999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |++++.+|..+..|+..+.... ...|+++++||+|+.+ +.... ....++...+++++++|+++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887764 3689999999999874 33333 3345666678899999999999999999999999


Q ss_pred             HhCC
Q 027593          171 LAGD  174 (221)
Q Consensus       171 l~~~  174 (221)
                      +..+
T Consensus       161 ~~~~  164 (188)
T cd04125         161 IIKR  164 (188)
T ss_pred             HHHH
Confidence            8754

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=2.3e-29  Score=180.62  Aligned_cols=157  Identities=33%  Similarity=0.624  Sum_probs=138.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.++++++|+
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            68999999999999999999999988888888888888888888888899999999999999888899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..+|.++..|+..+.... ++.|+++++||+|+... .... +...++...++.++++|++++.|++++|.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999988876554 68999999999999653 3333 3446677778999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=4.1e-29  Score=184.53  Aligned_cols=162  Identities=27%  Similarity=0.475  Sum_probs=139.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+|+|++|+|||||+++|+.+.+.. .+.++.+.++....+.+.+..+.+.+||++|+..+...+..++..++++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 5778888888777888888889999999999999988888899999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-----ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ||+++..+|..+..|+..+....++.|+++|+||+|+....     ... +...++...+.+++++|++++.|++++|.+
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999887766689999999999985321     111 233556667789999999999999999999


Q ss_pred             HHHHHhCCC
Q 027593          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |++.+.+.+
T Consensus       161 i~~~~~~~~  169 (193)
T cd04118         161 VAEDFVSRA  169 (193)
T ss_pred             HHHHHHHhc
Confidence            999887654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=3.7e-29  Score=187.51  Aligned_cols=164  Identities=32%  Similarity=0.539  Sum_probs=143.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+||++|++++...+..+++.++++
T Consensus         9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~   88 (216)
T PLN03110          9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA   88 (216)
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence            44679999999999999999999998888777788999888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... ....++...+++++++||++|.|++++|..
T Consensus        89 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~  168 (216)
T PLN03110         89 LLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQT  168 (216)
T ss_pred             EEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887764 4799999999999854 33333 344566677899999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |+..+.+
T Consensus       169 l~~~i~~  175 (216)
T PLN03110        169 ILLEIYH  175 (216)
T ss_pred             HHHHHHH
Confidence            9998865

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=4.1e-29  Score=180.91  Aligned_cols=159  Identities=32%  Similarity=0.604  Sum_probs=137.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-ccccccccCccEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~   91 (221)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|++.+. ..+..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999988887788888888888888888888999999999998876 467888999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCC---CCChHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKS---NYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~---~~~i~~~~  164 (221)
                      |||++++.+|..+..|+..+....  .+.|+++|+||+|+... .... ...+++...+++++++||++   +.+++++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887653  57999999999998653 3333 34466677789999999998   88999999


Q ss_pred             HHHHHHH
Q 027593          165 LYLARKL  171 (221)
Q Consensus       165 ~~l~~~l  171 (221)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998865

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=1.4e-30  Score=176.63  Aligned_cols=175  Identities=29%  Similarity=0.466  Sum_probs=155.6

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      |.+..+....-.+|||+++|..-+|||+|+-+|+.++|..+...+...+.....+.+.+....+++|||+|+++|..+-.
T Consensus         1 ~~~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGP   80 (218)
T KOG0088|consen    1 MMLETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGP   80 (218)
T ss_pred             CCccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCc
Confidence            55566666777899999999999999999999999999998888877777777788888889999999999999999999


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      -|++.++++++|||++|+.||+.++.|...++.... .+.+++|+||.|++. +++.. +....++..+..++++||+.+
T Consensus        81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N  160 (218)
T KOG0088|consen   81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN  160 (218)
T ss_pred             eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence            999999999999999999999999999999988764 578899999999975 44443 566788899999999999999


Q ss_pred             CChHHHHHHHHHHHhCCC
Q 027593          158 YNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~  175 (221)
                      .|+.++|..|...+....
T Consensus       161 ~Gi~elFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  161 VGISELFESLTAKMIEHS  178 (218)
T ss_pred             cCHHHHHHHHHHHHHHHh
Confidence            999999999999887754

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=4.5e-29  Score=179.83  Aligned_cols=155  Identities=28%  Similarity=0.456  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++ ......+...+.+.+|||+|++.+...+..++..++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777766444 334556677789999999999999888888899999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |+++..+|..+..|...+....    ++.|+++|+||+|+.. +.... +....+...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999888776643    5789999999999965 33333 3345666678899999999999999999998


Q ss_pred             HH
Q 027593          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=4.2e-29  Score=186.53  Aligned_cols=163  Identities=28%  Similarity=0.549  Sum_probs=139.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+. +..+.+.+|||+|++.+...+..+++++++++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            35899999999999999999999888877777888877777777663 56789999999999999988899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||++++.+|.++..|+..+....  ...|+++++||+|+... .+.. +...++...+++++++|+++|.|++++|.+
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887654  35678999999998653 3333 344677778899999999999999999999


Q ss_pred             HHHHHhCC
Q 027593          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+...
T Consensus       161 l~~~~~~~  168 (211)
T cd04111         161 LTQEIYER  168 (211)
T ss_pred             HHHHHHHH
Confidence            99988654

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=3.8e-29  Score=183.78  Aligned_cols=162  Identities=30%  Similarity=0.468  Sum_probs=134.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+|+|++|+|||||+++|+.+.+...+.++.+..+.. ..... +..+.+.+|||+|++.+...+..++..+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998887777777665543 34444 6678999999999999988888899999999999


Q ss_pred             EeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-----cc-HHHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----~~-~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~  164 (221)
                      ||+++..+|+++. .|...+....++.|+++|+||+|+....     .. .+..+++...+. +++++||++|.|++++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  159 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence            9999999999986 5887776666789999999999985422     22 234466777777 89999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 027593          165 LYLARKLAGDPN  176 (221)
Q Consensus       165 ~~l~~~l~~~~~  176 (221)
                      ..+++.+.....
T Consensus       160 ~~l~~~~~~~~~  171 (187)
T cd04132         160 DTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHhhhh
Confidence            999999876543

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=6.9e-29  Score=178.53  Aligned_cols=159  Identities=33%  Similarity=0.571  Sum_probs=132.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|+|||||+++++.+.+...+.++.+.. ......+++..+.+.+|||||++++...+..+++.++++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            35899999999999999999999887766666666533 34456677778899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCccc-ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |+|+++..+|..+..|...+....  .+.|+++++||+|+.... ... +...++...+++++++||++|.|++++|+.|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999988877653  478999999999996532 233 3345666778899999999999999999999


Q ss_pred             HHHH
Q 027593          168 ARKL  171 (221)
Q Consensus       168 ~~~l  171 (221)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=7.6e-29  Score=178.28  Aligned_cols=160  Identities=34%  Similarity=0.695  Sum_probs=139.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.....++.+.++......+++..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999888887777788888888878888888889999999999998888899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..++..+..|+..+.... ++.|+++++||+|+.. ..... ....++...+++++++|+.++.|+++++..|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998887765 6899999999999865 33333 3445667778999999999999999999999987


Q ss_pred             HhC
Q 027593          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +..
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            753

Rab GTPases are implicated in vesicle trafficking.

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=3e-29  Score=184.69  Aligned_cols=160  Identities=33%  Similarity=0.543  Sum_probs=134.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++++...+..+++.++++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999998888777777776444 3345667778899999999999999999999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +++..+|..+..|+..+....    .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988876543    4689999999999864 33333 33456677788999999999999999999999


Q ss_pred             HHHhCCC
Q 027593          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      +.+....
T Consensus       160 ~~l~~~~  166 (190)
T cd04144         160 RALRQQR  166 (190)
T ss_pred             HHHHHhh
Confidence            9886543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=1.2e-28  Score=179.12  Aligned_cols=157  Identities=29%  Similarity=0.494  Sum_probs=131.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   95 (221)
                      |+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+...+..++..++++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            68999999999999999999888777766665443 34566777888999999999999999989999999999999999


Q ss_pred             CChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcCc-eEEEeecCCCCC
Q 027593           96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEISAKSNYN  159 (221)
Q Consensus        96 ~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~~s~~~~~~  159 (221)
                      ++..+|+++. .|...+....++.|+++|+||+|+....             +. .+..+++...+. .++++|+++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999986 5898888777899999999999986421             11 123356777775 899999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      ++++|..+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987653

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=1.1e-28  Score=177.01  Aligned_cols=157  Identities=32%  Similarity=0.565  Sum_probs=135.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++++.+...+.++.+.++....+.+.+..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999988887777788888888888888877789999999999999888888999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCC-cccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-NRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~-~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |++++.+|..+..|+..+..... +.|+++++||+|+. ......+ ........++.++++|++++.|+++++.+|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998766543 69999999999994 3343443 345666778999999999999999999999875

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=1.5e-28  Score=176.65  Aligned_cols=159  Identities=35%  Similarity=0.618  Sum_probs=138.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.++++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999998888776788888888888888888899999999999998888888899999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      +|+++..+|.....|+..+.... +..|+++++||+|+.. ..... +...++...++.++++|+++|.|++++|.+|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998887765 5789999999999863 22222 344667777899999999999999999999998


Q ss_pred             HH
Q 027593          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.2e-28  Score=183.99  Aligned_cols=163  Identities=32%  Similarity=0.545  Sum_probs=142.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.++++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            46999999999999999999999888887778888888888788888888999999999999988888899999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||+++..+|..+..|...+.... +..|+++++||+|+... .... +..+++...+++++++|++++.|++++|.+++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999989988776553 57999999999999653 3333 34567777889999999999999999999999


Q ss_pred             HHHhCC
Q 027593          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+.++
T Consensus       165 ~~~~~~  170 (210)
T PLN03108        165 AKIYKK  170 (210)
T ss_pred             HHHHHH
Confidence            988754

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.3e-28  Score=177.16  Aligned_cols=158  Identities=30%  Similarity=0.566  Sum_probs=132.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+|+|++|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++++...+..+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998888776666665 333455667777899999999999999998899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |+++..+|..+..|...+....  .+.|+++++||+|+... .... ....++...+.+++++||++|.|++++|.+|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999888776653  36899999999999653 3333 334566777899999999999999999999998


Q ss_pred             HHh
Q 027593          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            764

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=1.6e-28  Score=176.77  Aligned_cols=158  Identities=27%  Similarity=0.542  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      +||+++|++|||||||++++..+  .+...+.++.|.++......+. +..+.+.+|||+|+..+...+..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999997754  5667778888888777766664 56799999999999988888888999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +|+|+++..+|..+..|+..+.....+.|+++|+||+|+... ..... ...+....+++++++|++++.|++++|..|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            999999999999999999988776667999999999999643 23332 2345566678999999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.4e-28  Score=181.25  Aligned_cols=156  Identities=21%  Similarity=0.390  Sum_probs=123.6

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHhcCC-----CCCcccCCcee-EeeeEE--------EEecCeEEEEEEEeCCCcccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~-~~~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      .+||+++|..|||||||+. ++..+.     +...+.++.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            4899999999999999995 554433     33445666652 222222        25678889999999999875  3


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCc--------------------ccccH
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQVKA  136 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~--------------------~~~~~  136 (221)
                      ....++++++++++|||++++.||.++. .|...+....++.|+++|+||+|+..                    +.+..
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4566889999999999999999999997 69988877767899999999999863                    22333


Q ss_pred             -HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593          137 -KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       137 -~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                       +..+++...+++|+++||++|.|++++|..++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence             4557888889999999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=2.6e-28  Score=175.13  Aligned_cols=157  Identities=35%  Similarity=0.623  Sum_probs=137.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.....++.+.++......+.+..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            68999999999999999999988887778888888888777777777899999999999998888888999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..+|..+..|+..+....  .+.|+++++||+|+....... +...++...+++++++|+++|.|+++++..+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999998887764  478999999999997544333 4456777788999999999999999999988775

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04142 RRP22 RRP22 subfamily

Probab=99.96  E-value=2.5e-28  Score=180.40  Aligned_cols=163  Identities=20%  Similarity=0.289  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      +||+|+|.+|||||||+++|+.+.+...+.++.+.......+.+++..+.+.+|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999887777777776666556677777889999999997654221        2234788


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcc-cccHHHH-HHH-HhcCceEEEeecCCCC
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QVKAKQV-TFH-RKKNLQYYEISAKSNY  158 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~-~~~~~~~-~~~-~~~~~~~~~~s~~~~~  158 (221)
                      +|++++|||++++.+|..+..|...+....    ++.|+++|+||+|+... ....+.. .++ ...+++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            999999999999999999999988876653    57899999999999653 2333322 333 3457899999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027593          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~  176 (221)
                      |++++|..+++.+..+.+
T Consensus       161 ~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         161 HILLLFKELLISATTRGR  178 (198)
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            999999999998876543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01862 Rab7 Rab7 subfamily

Probab=99.96  E-value=3e-28  Score=176.57  Aligned_cols=161  Identities=31%  Similarity=0.635  Sum_probs=136.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.....++.+.++......+.+..+.+.+||+||+..+...+..+++.++++++++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988887777788887777777788888899999999999988888889999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcC-----CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcC-ceEEEeecCCCCChHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~  165 (221)
                      |+++..++..+..|...+.....     +.|+++|+||+|+.. ..... ....+....+ .+++++|+++|.|++++|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888887655543     789999999999973 32222 3335556665 7999999999999999999


Q ss_pred             HHHHHHhCC
Q 027593          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999987754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=172.20  Aligned_cols=163  Identities=28%  Similarity=0.546  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+.+++.++|.+-+|||+|++.|..|++.....|+.|++....-+.+ .+..+.+++|||+|++++++....|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35799999999999999999999999999999999999887765555 35678999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCE-EEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++|||.+|++||+-+..|+..-....  +.+++ .+|++|+|+.. +++..+ ...++..+++.|+++|+++|.|++++|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            99999999999999999998876654  34444 68999999975 556554 558899999999999999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      ..|++.+..
T Consensus       166 ~mlaqeIf~  174 (213)
T KOG0091|consen  166 DMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHH
Confidence            999998754

>cd04126 Rab20 Rab20 subfamily

Probab=99.96  E-value=2.8e-28  Score=182.14  Aligned_cols=155  Identities=29%  Similarity=0.479  Sum_probs=127.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+++|+.+.+.. +.++.+..+.....    ..+.+.+|||+|++.+...+..+++.++++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999988864 46677665544332    5678999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCc--------------------ccccH-HHHHHHHhcC-----
Q 027593           94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQVKA-KQVTFHRKKN-----  146 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~--------------------~~~~~-~~~~~~~~~~-----  146 (221)
                      |++++.+|.++..|...+... ..+.|+++|+||+|+.+                    +.+.. +...++...+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999998877766554 35689999999999864                    22223 3345666554     


Q ss_pred             ---------ceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       147 ---------~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                               ++|+++||++|.|++++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     689999999999999999999988764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.96  E-value=4.7e-28  Score=175.83  Aligned_cols=155  Identities=26%  Similarity=0.453  Sum_probs=129.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|+|||||+++++.+.+...+.++. .+.......+++..+.+.+||++|+..+...+..++++++++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            689999999999999999998888877776665 3445556777888899999999999999999899999999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      |++++.+|..+. .|...+....++.|+++++||+|+...             .+.. +...++...+. .++++||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999999885 688877766568999999999998532             2222 34466677777 8999999999


Q ss_pred             CChHHHHHHHHH
Q 027593          158 YNFEKPFLYLAR  169 (221)
Q Consensus       158 ~~i~~~~~~l~~  169 (221)
                      .|++++|..+..
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999987764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.96  E-value=2.7e-28  Score=174.23  Aligned_cols=150  Identities=23%  Similarity=0.366  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++|+.+.+.+.+.++ +..+ ...+.+++..+.+.+||++|++.     ..+++.++++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            58999999999999999999988887665544 3333 35677788888999999999974     34677899999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc---ccccHHH-HHHHHhc-CceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKAKQ-VTFHRKK-NLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~---~~~~~~~-~~~~~~~-~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |++++.+|.++..|...+....  ++.|+++|+||+|+..   +.+..+. .+++... ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999887764  5789999999999842   3334332 3555554 589999999999999999999


Q ss_pred             HHHH
Q 027593          167 LARK  170 (221)
Q Consensus       167 l~~~  170 (221)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01892 Miro2 Miro2 subfamily

Probab=99.96  E-value=3.7e-28  Score=175.61  Aligned_cols=161  Identities=19%  Similarity=0.214  Sum_probs=134.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+.+||+++|.+|||||||+++|+.+.+. ..+.++.+..+....+.+++..+.+.+||++|+..+...+..++..+|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999987 77888888777777777788888999999999999988888999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCc-eEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|++++.+|..+..|...+.. ..+.|+++|+||+|+.+.. .. .+..+++...++ .++++||+++.|++++|..
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999988888775532 2378999999999985432 21 223355566666 4699999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            999765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04148 RGK RGK subfamily

Probab=99.96  E-value=9.8e-28  Score=180.28  Aligned_cols=189  Identities=18%  Similarity=0.258  Sum_probs=143.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc-CccEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII   91 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-~~~~~i~   91 (221)
                      +||+++|++|+|||||+++|+.+.+. ..+.++.+.+.....+.+++....+.+|||+|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999998888876 5566666656677778888888999999999987  223344556 8999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |||++++.+|..+..|+..+....  .+.|+++|+||+|+.. ..+..+ ...++...+++++++||+++.|++++|.+|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988887653  5799999999999864 333333 345666678899999999999999999999


Q ss_pred             HHHHhCCCCCccccCC---CCCCcccccchHHHHHHHHHH
Q 027593          168 ARKLAGDPNLHFVESP---ALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       168 ~~~l~~~~~~~~~~ep---~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      ++.+..........++   .....+...-.....+.+..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~  198 (221)
T cd04148         159 VRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKL  198 (221)
T ss_pred             HHHHHhhhccccccCccccccccCccchHHHHHHHHHHHH
Confidence            9998754443334443   334444444444444444333

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>PLN03118 Rab family protein; Provisional

Probab=99.96  E-value=6.7e-28  Score=180.34  Aligned_cols=167  Identities=31%  Similarity=0.537  Sum_probs=139.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .....+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus        10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~   88 (211)
T PLN03118         10 GYDLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQG   88 (211)
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCE
Confidence            345579999999999999999999887765 4567788888877778888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHH-HHHHHHhhc--CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           89 AIIMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +++|||+++..+|..+.. |...+....  ...|+++|+||+|+... ... .+...++...++.++++|++++.|++++
T Consensus        89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l  168 (211)
T PLN03118         89 IILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQC  168 (211)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence            999999999999999874 655554432  36799999999998643 332 2344666777889999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 027593          164 FLYLARKLAGDPN  176 (221)
Q Consensus       164 ~~~l~~~l~~~~~  176 (221)
                      |.+|.+.+...+.
T Consensus       169 ~~~l~~~~~~~~~  181 (211)
T PLN03118        169 FEELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHHHhhhh
Confidence            9999999987664

>cd04135 Tc10 TC10 subfamily

Probab=99.96  E-value=9.2e-28  Score=174.41  Aligned_cols=157  Identities=25%  Similarity=0.397  Sum_probs=129.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|+|||||+++|+.+.+...+.++.+. .....+.+++..+.+.+|||+|+..+...+..++..++++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-eeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            58999999999999999999998887766666653 33445667777888999999999999999999999999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEeecCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      |++++.+|.++. .|...+....++.|+++++||+|+.+..             +.. +...++...+. .++++||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999999885 6888777666789999999999985421             111 23355566665 7999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027593          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~~i~~~~~~l~~~l  171 (221)
                      .|++++|..++.++
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.96  E-value=4.9e-28  Score=184.19  Aligned_cols=157  Identities=30%  Similarity=0.527  Sum_probs=131.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+...+..++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998877777776 455566778888899999999999988888788889999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhh----------cCCCCEEEEEeCCCCCc-ccccHHHH-HHHH-hcCceEEEeecCCCCCh
Q 027593           94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVKAKQV-TFHR-KKNLQYYEISAKSNYNF  160 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~-~~~~~~~~~s~~~~~~i  160 (221)
                      |+++..+|+++..|...+...          ..+.|+++|+||+|+.. +.+..+.. ++.. ..++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887653          24789999999999964 33343333 3333 23678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027593          161 EKPFLYLARKL  171 (221)
Q Consensus       161 ~~~~~~l~~~l  171 (221)
                      +++|.+|+...
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999864

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=1.3e-27  Score=171.34  Aligned_cols=158  Identities=31%  Similarity=0.562  Sum_probs=133.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|+|||||+++++.+.+.....++.+.+.......+.+..+.+.+||++|+..+...+..+++.++++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            68999999999999999999988876666666666666666666777889999999999988888888999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..++..+..|...+..... +.|+++++||+|+... ....+ ..+.....++.++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999888877653 6899999999998743 33333 335566678899999999999999999999886


Q ss_pred             H
Q 027593          171 L  171 (221)
Q Consensus       171 l  171 (221)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=4.5e-28  Score=176.88  Aligned_cols=160  Identities=22%  Similarity=0.286  Sum_probs=124.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+.++||+++|.+|||||||++++..+.+. .+.++.|.+...    +...++.+++||+||++.++..+..++++++++
T Consensus        14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i   88 (181)
T PLN00223         14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            466799999999999999999998877764 456777755432    333568999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCCCcccccHHHHHHHHhc-----CceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..++.....++..+..  ..++.|+++++||+|+.+.....+........     .+.++++||++|+|+.+
T Consensus        89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e  168 (181)
T PLN00223         89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence            999999999999887766665533  23579999999999997643222222222111     23466899999999999


Q ss_pred             HHHHHHHHHhCC
Q 027593          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|++|+..+..+
T Consensus       169 ~~~~l~~~~~~~  180 (181)
T PLN00223        169 GLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987653

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=1.8e-27  Score=171.91  Aligned_cols=159  Identities=28%  Similarity=0.527  Sum_probs=133.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|.+|||||||+++|..+.+...+.++.+.. ......+++..+.+.+||+||+..+...+..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999888877777777644 345566777889999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcC-ceEEEeecCCCCChHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|++++.++..+..|...+....  .+.|+++++||.|+... .... +...+....+ ++++++||+++.|+.++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            99999999999999988876643  47999999999998643 2222 3334555555 789999999999999999999


Q ss_pred             HHHHh
Q 027593          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      ++.+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=8.5e-28  Score=173.16  Aligned_cols=157  Identities=22%  Similarity=0.400  Sum_probs=127.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCccEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~~~~i~v~   93 (221)
                      ||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+.. +......+++.+|++++|+
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            689999999999999999988877666666654333 44567788888999999999885 3445667889999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC-CChHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL  167 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~-~~i~~~~~~l  167 (221)
                      |+++..+|..+..|...+....   .+.|+++|+||+|+.. +.+.. +...++...+.+++++|++++ .|++++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988877653   3799999999999854 33333 344677777899999999999 5999999999


Q ss_pred             HHHHh
Q 027593          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98654

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd00154 Rab Rab family

Probab=99.96  E-value=1.3e-27  Score=170.56  Aligned_cols=155  Identities=38%  Similarity=0.742  Sum_probs=136.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||++++..+.+...+.++.+.++........+....+.+||+||+..+...+..++++++++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999998888887777888898888888888888899999999999988888899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCC-ccccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~-~~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+++..++..+..|+..+.... ...|+++++||+|+. ..... .+...+....+.+++++|++++.|+++++.+|.
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999998887775 579999999999996 33333 334466667789999999999999999998875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04149 Arf6 Arf6 subfamily

Probab=99.96  E-value=7.2e-28  Score=173.91  Aligned_cols=155  Identities=20%  Similarity=0.295  Sum_probs=120.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +++.+||+++|++|||||||++++..+.+. .+.++.|.++...    ....+.+.+|||+|+..+...+..++..++++
T Consensus         6 ~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~i   80 (168)
T cd04149           6 GNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETV----TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGL   80 (168)
T ss_pred             CCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEE----EECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            356799999999999999999998777664 3556766655422    23568999999999999988889999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..+|.++..|+..+...  ..+.|+++|+||+|+.+.....+.....     ....+.++++||++|.|+++
T Consensus        81 i~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~  160 (168)
T cd04149          81 IFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE  160 (168)
T ss_pred             EEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHH
Confidence            9999999999998887776665432  3578999999999986532222222221     12235789999999999999


Q ss_pred             HHHHHHH
Q 027593          163 PFLYLAR  169 (221)
Q Consensus       163 ~~~~l~~  169 (221)
                      +|.+|.+
T Consensus       161 ~~~~l~~  167 (168)
T cd04149         161 GLTWLSS  167 (168)
T ss_pred             HHHHHhc
Confidence            9999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=1.3e-27  Score=172.77  Aligned_cols=158  Identities=23%  Similarity=0.344  Sum_probs=123.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|.+|||||||++++..+.+.. +.+|.+.....    +...++.+.+|||||+..+...+..+++.++++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999988776543 55666644432    33356899999999999888888899999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhc------CceEEEeecCCCCChHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +++..++.++..|+..+...  ..+.|+++|+||+|+.......+........      ...++++||++|.|++++|.+
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            99999999988888877643  2468999999999997542222222322211      236889999999999999999


Q ss_pred             HHHHHhCCCCC
Q 027593          167 LARKLAGDPNL  177 (221)
Q Consensus       167 l~~~l~~~~~~  177 (221)
                      |++.+..++.+
T Consensus       156 l~~~~~~~~~~  166 (169)
T cd04158         156 LSRQLVAAGVL  166 (169)
T ss_pred             HHHHHhhcccc
Confidence            99988877654

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=4.3e-27  Score=170.07  Aligned_cols=160  Identities=34%  Similarity=0.614  Sum_probs=134.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.++|+++|++|||||||++++..+.+.+...++.+.+.......+.+..+.+.+||++|+..+...+..++..++++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            56999999999999999999988787777677777777777777788888899999999999888888889999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|..+..|+..+..... ..|+++++||+|+.. +..... ...+.......++++|+++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            9999999999999999888766543 689999999999864 333333 2344455568899999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            764

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=5.8e-27  Score=170.34  Aligned_cols=157  Identities=31%  Similarity=0.513  Sum_probs=128.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      .||+++|++|||||||+++|+.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++..++++++||
T Consensus         2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (175)
T cd01870           2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCF   80 (175)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEEE
Confidence            58999999999999999999988887777777764443 35567778889999999999998888888899999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccccc--------------HHHHHHHHhcC-ceEEEeecCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------AKQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--------------~~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |+++..+|..+. .|...+....++.|+++|+||+|+......              .+..+++...+ ..++++||++|
T Consensus        81 ~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~  160 (175)
T cd01870          81 SIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKTK  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccccC
Confidence            999999998885 588877766678999999999998542211              12234444444 48999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027593          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~~i~~~~~~l~~~l  171 (221)
                      .|++++|.+|+++.
T Consensus       161 ~~v~~lf~~l~~~~  174 (175)
T cd01870         161 EGVREVFEMATRAA  174 (175)
T ss_pred             cCHHHHHHHHHHHh
Confidence            99999999998754

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.6e-29  Score=171.73  Aligned_cols=163  Identities=32%  Similarity=0.583  Sum_probs=143.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec---------CeEEEEEEEeCCCccccccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGY   82 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~D~~g~~~~~~~~~~~   82 (221)
                      +-+|.+.+|.+|+||||++.+|..|+|..+...+.|++...+.+..+         +..+++++|||+|+++++++...+
T Consensus         8 ylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAF   87 (219)
T KOG0081|consen    8 YLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAF   87 (219)
T ss_pred             HHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHH
Confidence            35688899999999999999999999999999999999888776553         345889999999999999999999


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCccc-ccHH-HHHHHHhcCceEEEeecCCCC
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ-VKAK-QVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~-~~~~-~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++.+=+++++||.++..||.+++.|+..+..+  +.+..+++++||+|+++.. +..+ ..+++..+++|||++||.+|.
T Consensus        88 fRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~  167 (219)
T KOG0081|consen   88 FRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT  167 (219)
T ss_pred             HHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence            99999999999999999999999999988765  4788899999999998744 3333 458899999999999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 027593          159 NFEKPFLYLARKLAGD  174 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~  174 (221)
                      ++++..+.+...++++
T Consensus       168 Nv~kave~LldlvM~R  183 (219)
T KOG0081|consen  168 NVEKAVELLLDLVMKR  183 (219)
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999998888877764

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.95  E-value=6.2e-27  Score=168.27  Aligned_cols=158  Identities=31%  Similarity=0.583  Sum_probs=132.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            5899999999999999999998888776666655333 345567778899999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |+++..+|.++..|...+....  .+.|+++|+||+|+.. ..... .........+.+++++|++++.|++++|..+.+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999998888887763  5799999999999975 22332 334556667789999999999999999999998


Q ss_pred             HHh
Q 027593          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04129 Rho2 Rho2 subfamily

Probab=99.95  E-value=1.4e-26  Score=170.08  Aligned_cols=160  Identities=31%  Similarity=0.475  Sum_probs=129.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      .||+|+|++|+|||||++++..+.+.+.+.++.+..+ .....+++..+.+.+||++|+..+......++..+++++++|
T Consensus         2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~   80 (187)
T cd04129           2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGF   80 (187)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEEE
Confidence            5899999999999999999888888766655554333 335566777788999999999888777777788999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-----------cc-HHHHHHHHhcCc-eEEEeecCCCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VK-AKQVTFHRKKNL-QYYEISAKSNYN  159 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-----------~~-~~~~~~~~~~~~-~~~~~s~~~~~~  159 (221)
                      ++++..+|..+. .|...+....++.|+++|+||+|+....           .. .+...++...+. .++++||++|.|
T Consensus        81 ~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~  160 (187)
T cd04129          81 AVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGEG  160 (187)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCCC
Confidence            999999999986 6999888777789999999999985421           11 233456666764 899999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 027593          160 FEKPFLYLARKLAGD  174 (221)
Q Consensus       160 i~~~~~~l~~~l~~~  174 (221)
                      ++++|.++++.+...
T Consensus       161 v~~~f~~l~~~~~~~  175 (187)
T cd04129         161 VDDVFEAATRAALLV  175 (187)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999877653

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.95  E-value=2.8e-27  Score=172.01  Aligned_cols=156  Identities=24%  Similarity=0.330  Sum_probs=121.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      +..+||+++|++|||||||++++..+.+. .+.++.+.......    ...+.+.+||++|+..+...+..+++++++++
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii   85 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQGLI   85 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence            55799999999999999999998777764 35567765554322    24689999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|++++.++.....|+..+...  .++.|+++|+||+|+.+.....+.....     ....+.++++||++|.|++++
T Consensus        86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~  165 (175)
T smart00177       86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEG  165 (175)
T ss_pred             EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHH
Confidence            999999999998888777766432  3578999999999996532222211111     122345778999999999999


Q ss_pred             HHHHHHHH
Q 027593          164 FLYLARKL  171 (221)
Q Consensus       164 ~~~l~~~l  171 (221)
                      |++|...+
T Consensus       166 ~~~l~~~~  173 (175)
T smart00177      166 LTWLSNNL  173 (175)
T ss_pred             HHHHHHHh
Confidence            99998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.95  E-value=4.9e-27  Score=171.63  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=122.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ...++||+++|++|||||||++++..+.+.. +.++.+..+..    +...++.+++|||+|++.+...+..+++.++++
T Consensus        14 ~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i   88 (182)
T PTZ00133         14 GKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVET----VEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGL   88 (182)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEE----EEECCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            3456999999999999999999987777754 55677755532    233568999999999999998999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..++.....++..+...  ..+.|+++|+||.|+.+.....+....     .....+.++++||++|.|+++
T Consensus        89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e  168 (182)
T PTZ00133         89 IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYE  168 (182)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHH
Confidence            9999999999998877666655332  346899999999998653221221111     111234567899999999999


Q ss_pred             HHHHHHHHHhCC
Q 027593          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|.+|.+.+.+.
T Consensus       169 ~~~~l~~~i~~~  180 (182)
T PTZ00133        169 GLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHh
Confidence            999999887653

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.95  E-value=3.8e-27  Score=168.71  Aligned_cols=151  Identities=24%  Similarity=0.336  Sum_probs=116.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||++++..+.+.. +.++.|......    ....+.+.+||++|+..+...+..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~~-~~pt~g~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVETV----EYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCcc-cCCCCCcceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            489999999999999999987887753 566777554322    235688999999999998888899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |+++..+|..+..|+..+...  ..+.|+++++||+|+.+.....+.....     ....+.++++||++|.|++++|++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            999999998888766655432  2468999999999996532222211111     122446789999999999999998


Q ss_pred             HHH
Q 027593          167 LAR  169 (221)
Q Consensus       167 l~~  169 (221)
                      |+.
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.95  E-value=1.8e-27  Score=171.26  Aligned_cols=150  Identities=15%  Similarity=0.155  Sum_probs=122.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   95 (221)
                      |+++|++|||||||+++|+.+.+...+.++.|...    ..+++.++.+.+||++|+..+...+..++++++++++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            78999999999999999998877777777877542    33455678999999999999999999999999999999999


Q ss_pred             CChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH------HHHHHHHhcCceEEEeecCC------CCChHHH
Q 027593           96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA------KQVTFHRKKNLQYYEISAKS------NYNFEKP  163 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~------~~~~~~~~~~~~~~~~s~~~------~~~i~~~  163 (221)
                      ++..+|.....|+..+....++.|+++|+||+|+.......      +...++...++.++++||++      ++|++++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence            99999998888888776555789999999999986533221      12234455678899998888      9999999


Q ss_pred             HHHHHH
Q 027593          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      |..+..
T Consensus       158 ~~~~~~  163 (164)
T cd04162         158 LSQLIN  163 (164)
T ss_pred             HHHHhc
Confidence            987753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.95  E-value=9.9e-27  Score=170.29  Aligned_cols=161  Identities=21%  Similarity=0.277  Sum_probs=126.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ..+||+++|++|||||||+++++.+.+... .++.|.+.....+.+ ++..+.+.+|||+|++.+...+..+++.+++++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            468999999999999999999888776543 566666665555544 346789999999999988888889999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHH------hcCceEEEeecCCCCChHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~i~~  162 (221)
                      +|+|+++..++..+..|+..+....  .+.|+++++||+|+.......+...+..      ...++++++||++|.|+++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            9999999999988888877766543  4789999999999864321122112111      1135688999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      ++.+|++.+..
T Consensus       161 l~~~l~~~l~~  171 (183)
T cd04152         161 GLEKLYEMILK  171 (183)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd00157 Rho Rho (Ras homology) family

Probab=99.95  E-value=2.4e-26  Score=166.37  Aligned_cols=155  Identities=29%  Similarity=0.519  Sum_probs=126.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.. ..........+..+.+.+||+||+..+...+..+++.++++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999988887665555554 333445566778899999999999988888888889999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-------------cHHHHHHHHhcCc-eEEEeecCCCC
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY  158 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~  158 (221)
                      |+++..+|.... .|...+.....+.|+++|+||+|+.....             ..+...+....+. +++++|+++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            999999997765 57777777667899999999999865432             1233455666666 99999999999


Q ss_pred             ChHHHHHHHHH
Q 027593          159 NFEKPFLYLAR  169 (221)
Q Consensus       159 ~i~~~~~~l~~  169 (221)
                      |+++++..|.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04154 Arl2 Arl2 subfamily

Probab=99.95  E-value=7.9e-27  Score=169.38  Aligned_cols=155  Identities=17%  Similarity=0.266  Sum_probs=119.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+..++|+++|++|||||||++++..+ ....+.++.|.....  ..+  ..+.+.+||+||++.+...+..++..++++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~--~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKT--LEY--EGYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            456799999999999999999997755 344555666643332  233  357899999999998888888899999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..+|.....|+..+...  ..+.|+++|+||+|+.+.....+.....     ....++++++||++|.|+++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  165 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ  165 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence            9999999999998888777766442  2579999999999996543222222222     23457899999999999999


Q ss_pred             HHHHHHH
Q 027593          163 PFLYLAR  169 (221)
Q Consensus       163 ~~~~l~~  169 (221)
                      +|.+++.
T Consensus       166 l~~~l~~  172 (173)
T cd04154         166 GIDWLVD  172 (173)
T ss_pred             HHHHHhc
Confidence            9988763

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=1e-26  Score=170.44  Aligned_cols=161  Identities=32%  Similarity=0.572  Sum_probs=146.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      ..+||+++|.+|+|||+|..+|+.+.|...+.++++ +.+...+.+++....+.++||+|++.+......++.+++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            579999999999999999999999999999999998 7777788899999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHHH-HHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~~-~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ||+++++.||+.+..++..+....  ...|+++|+||+|+.. +.+..+. ..++...+++|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            999999999999999999885543  4689999999999987 5666554 57788889999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998766

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=9.5e-29  Score=163.23  Aligned_cols=158  Identities=27%  Similarity=0.547  Sum_probs=139.3

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593           17 VIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        17 ~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   95 (221)
                      +++|.+++|||+|+-+|-.|.|. .....+.|+++..+.+.+++..+.+++|||+||+++++....|++.+|+++++||+
T Consensus         1 mllgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydi   80 (192)
T KOG0083|consen    1 MLLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI   80 (192)
T ss_pred             CccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence            37899999999998877666653 34467899999999999999999999999999999999999999999999999999


Q ss_pred             CChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593           96 TARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      .+..||++...|+..+..+.. ...+++++||||+.. +.+. .+...++..+++||.++|+++|.+++.+|..|+..+.
T Consensus        81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~  160 (192)
T KOG0083|consen   81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK  160 (192)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence            999999999999999988753 577889999999954 4443 3566889999999999999999999999999999987


Q ss_pred             CC
Q 027593          173 GD  174 (221)
Q Consensus       173 ~~  174 (221)
                      +.
T Consensus       161 k~  162 (192)
T KOG0083|consen  161 KL  162 (192)
T ss_pred             Hh
Confidence            64

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=4e-26  Score=164.60  Aligned_cols=157  Identities=18%  Similarity=0.299  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|.+|||||||+++|..+.+...+..+..  .......+.+..+.+.+|||+|+..+...+..++..++++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999998887655333221  12233455667889999999999887777777789999999999


Q ss_pred             eCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHH-HHHHhc-C-ceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQV-TFHRKK-N-LQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~-~~~~~~-~-~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |++++.+|..+. .|...+....++.|+++|+||+|+.+....   .+.. ...... . ..++++||+++.|++++|..
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            999999999875 687777766668999999999999764332   1222 222222 2 37999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      +.+.+.
T Consensus       159 ~~~~~~  164 (166)
T cd01893         159 AQKAVL  164 (166)
T ss_pred             HHHHhc
Confidence            988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.95  E-value=3e-26  Score=164.01  Aligned_cols=155  Identities=33%  Similarity=0.590  Sum_probs=130.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|||||||+++++.+.+...+.++.+ +.........+..+.+.+||+||+..+...+..+++.++++++|+|
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999888877666666665 4455556666667899999999999888888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      +++..++.++..|...+.....  ..|+++++||+|+.. ..... ....+....+.+++++|++++.|+++++.+|.+.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999888888877654  899999999999976 33333 3345666667899999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.94  E-value=8.4e-26  Score=167.37  Aligned_cols=159  Identities=28%  Similarity=0.401  Sum_probs=128.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|.+|||||||+++|+.+.+...+.++.+ ......+.+.+..+.+.+||++|+..+...+..++..+|++++|+|
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666654 3344456667777899999999999888888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc--cccHHH-HHHH-HhcCceEEEeecCCCCChHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQ-VTFH-RKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~--~~~~~~-~~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +++..+|..+..|...+....  .+.|+++++||+|+...  ...... .+.. ...+.+++++|+++|.|++++|.+|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988877764  47999999999998542  222221 2222 23457899999999999999999999


Q ss_pred             HHHhCC
Q 027593          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+...
T Consensus       160 ~~~~~~  165 (198)
T cd04147         160 RQANLP  165 (198)
T ss_pred             HHhhcc
Confidence            977643

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04157 Arl6 Arl6 subfamily

Probab=99.94  E-value=2.1e-26  Score=165.25  Aligned_cols=151  Identities=24%  Similarity=0.395  Sum_probs=116.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +|+++|++|||||||++++..+.+ ...+.++.|.+....    ....+.+.+|||||+..+...+..++..++++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            589999999999999999877653 455667777544332    235688999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcccccHHHHH---HH--HhcCceEEEeecCCCCChHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVT---FH--RKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~~~~~~~~~---~~--~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      |+++..++.....|+..+....    .+.|+++++||+|+.......+...   ..  ....+.++++||++|.|++++|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            9999999988777777664431    4799999999999875432222111   11  1123468999999999999999


Q ss_pred             HHHHH
Q 027593          165 LYLAR  169 (221)
Q Consensus       165 ~~l~~  169 (221)
                      .+|..
T Consensus       157 ~~l~~  161 (162)
T cd04157         157 QWLQA  161 (162)
T ss_pred             HHHhc
Confidence            99864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.94  E-value=5.3e-26  Score=165.17  Aligned_cols=154  Identities=25%  Similarity=0.360  Sum_probs=119.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ...++|+++|++|+|||||+++++.+.+.. +.++.+.++...    ....+.+.+||+||+..+...+..++..+++++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEI----VYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEE----EECCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            346899999999999999999988877764 456666554332    224689999999999988888889999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-H----HHhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-F----HRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-~----~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|+++..++.....++..+...  ..+.|+++++||+|+.......+... +    .....++++++||++|.|++++
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            999999999888777666665433  24689999999999865321122111 1    1234567999999999999999


Q ss_pred             HHHHHH
Q 027593          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      |.+|++
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.94  E-value=6.8e-26  Score=167.19  Aligned_cols=147  Identities=19%  Similarity=0.318  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-----CeEEEEEEEeCCCcccccccccccccCccE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      +||+++|.+|+|||||+++|+.+.+...+.++.|.+.......+.     +..+.+.+|||+|++.+...+..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888888877776666553     467899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--------------------cCCCCEEEEEeCCCCCcc-cccHH-----HHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNR-QVKAK-----QVTFH  142 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~i~v~nk~D~~~~-~~~~~-----~~~~~  142 (221)
                      +++|||++++.||+++..|+..+...                    ..+.|+++|+||+|+.+. ....+     ...++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999988653                    136899999999998653 22221     23456


Q ss_pred             HhcCceEEEeecCCCCCh
Q 027593          143 RKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       143 ~~~~~~~~~~s~~~~~~i  160 (221)
                      ...+.+.+.+++.....+
T Consensus       161 ~~~~~~~i~~~c~~~~~~  178 (202)
T cd04102         161 EQGNAEEINLNCTNGRLL  178 (202)
T ss_pred             HhcCCceEEEecCCcccc
Confidence            778899888888865544

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=165.13  Aligned_cols=165  Identities=27%  Similarity=0.476  Sum_probs=144.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ...+|+.|+|..++|||+|+-.+..+.|+..+.|+.. +.+...+.++ +..+.+.+|||+||+.|..++.--+..+|.+
T Consensus         2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf   80 (198)
T KOG0393|consen    2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF   80 (198)
T ss_pred             ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence            4569999999999999999999999999999999998 6777788885 9999999999999999999888889999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcC-ceEEEee
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~-~~~~~~s  153 (221)
                      ++||++.++.||+++. .|+..+..++++.|+++|++|.|+.+..             +.. +....+...| ..|++||
T Consensus        81 l~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcS  160 (198)
T KOG0393|consen   81 LLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECS  160 (198)
T ss_pred             EEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeeh
Confidence            9999999999999975 8999999999999999999999997421             111 2345667777 5899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~~  176 (221)
                      +++..|++++|+..+++....++
T Consensus       161 a~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  161 ALTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhhCCcHHHHHHHHHHHhcccc
Confidence            99999999999999998877654

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.94  E-value=1.8e-25  Score=163.24  Aligned_cols=161  Identities=26%  Similarity=0.382  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      .||+++|++|+|||||+++++.+.+...+.++.+... .......+..+.+.+||+||+..+...+..++..+++++++|
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999988877665555554332 334556667788999999999988888888999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |+++..++..+..|...+....  .+.|+++++||+|+... .... +........+.+++++|++++.|+.+++.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999988877776643  46899999999998642 2222 233455666789999999999999999999999


Q ss_pred             HHhCCC
Q 027593          170 KLAGDP  175 (221)
Q Consensus       170 ~l~~~~  175 (221)
                      .+...+
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            887654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=5.4e-26  Score=151.79  Aligned_cols=165  Identities=33%  Similarity=0.543  Sum_probs=148.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+|-.++|.-|+|||+|+.+|...+|.....+++|+......+.+.+..+.+++|||+|+++++...+.|++.+-+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++.+.....+..|+..-+... ++.-+++++||.|++. +.+..+ ..+++...++.|.++|+++|.++++.|.+.+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            999999988888889988876653 5677889999999986 444444 5588999999999999999999999999999


Q ss_pred             HHHhCCCC
Q 027593          169 RKLAGDPN  176 (221)
Q Consensus       169 ~~l~~~~~  176 (221)
                      +.+.++-+
T Consensus       170 kkiyqniq  177 (215)
T KOG0097|consen  170 KKIYQNIQ  177 (215)
T ss_pred             HHHHHhhh
Confidence            99877543

>cd00879 Sar1 Sar1 subfamily

Probab=99.94  E-value=1.2e-25  Score=165.56  Aligned_cols=155  Identities=17%  Similarity=0.299  Sum_probs=118.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+++|++|||||||++++..+.+. .+.++.+.+..  .+.+  .+..+.+||+||+..+...+..++..+++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~--~i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSE--ELTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceE--EEEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            45799999999999999999998776653 44555554332  2233  3578999999999888888888899999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHHh----------------cCceEEEe
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI  152 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~~----------------~~~~~~~~  152 (221)
                      +|+|+++..++.....|...+....  .+.|+++++||+|+.......+.......                ..+.++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            9999999988887777777665432  46999999999998653222222222221                23578999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 027593          153 SAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~  170 (221)
                      ||++|.|++++|.+|++.
T Consensus       172 Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EecCCCChHHHHHHHHhh
Confidence            999999999999999875

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.94  E-value=1.6e-25  Score=160.40  Aligned_cols=151  Identities=19%  Similarity=0.303  Sum_probs=115.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      +|+++|++|||||||+++|..+.+.. ..++.+.+...  ... +....+.+||++|+..+...+..++..++++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~--~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEM--LQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEE--EEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999988877653 34566544332  222 346899999999999888888888999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +++..++.....|+..+...  ..+.|+++|+||+|+.......+..      ......+++++++||++|.|++++|.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            99999888888777766543  2579999999999986422111111      112223457899999999999999998


Q ss_pred             HHH
Q 027593          167 LAR  169 (221)
Q Consensus       167 l~~  169 (221)
                      |++
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.93  E-value=2.1e-25  Score=160.89  Aligned_cols=150  Identities=23%  Similarity=0.293  Sum_probs=117.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      +|+++|++|||||||++++..+ +...+.++.|.+...    +...+..+.+||+||+..+...+..++.+++++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~----~~~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTK----LRLDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEE----EEECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999997654 666677787765432    22356889999999999988889999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH------HHHHhc--CceEEEeecCCC------C
Q 027593           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK--NLQYYEISAKSN------Y  158 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~--~~~~~~~s~~~~------~  158 (221)
                      +++..++.++..|+..+....  .+.|+++|+||+|+.+.....+..      .++...  .+.++.+||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999888888776542  478999999999997643222211      122222  356788999998      8


Q ss_pred             ChHHHHHHHHH
Q 027593          159 NFEKPFLYLAR  169 (221)
Q Consensus       159 ~i~~~~~~l~~  169 (221)
                      |+++.|.||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999965

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PLN00023 GTP-binding protein; Provisional

Probab=99.93  E-value=5.2e-25  Score=170.12  Aligned_cols=142  Identities=21%  Similarity=0.391  Sum_probs=119.5

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-------------eEEEEEEEeCCCc
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQ   72 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~D~~g~   72 (221)
                      +...+...+||+|+|..|||||||+++|+.+.+...+.++.|.++....+.+++             ..+.+.+|||+|+
T Consensus        14 ~~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGq   93 (334)
T PLN00023         14 NGGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGH   93 (334)
T ss_pred             ccCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCC
Confidence            456678899999999999999999999999998888889999888776666542             4688999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-------------CCCCEEEEEeCCCCCccc------
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ------  133 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~i~v~nk~D~~~~~------  133 (221)
                      +.+..++..++++++++|+|||+++..+|.++..|+..+....             .+.|++||+||+|+....      
T Consensus        94 ErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s  173 (334)
T PLN00023         94 ERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSS  173 (334)
T ss_pred             hhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccc
Confidence            9999999999999999999999999999999999999987652             147999999999996531      


Q ss_pred             --ccHHHHHHHHhcCc
Q 027593          134 --VKAKQVTFHRKKNL  147 (221)
Q Consensus       134 --~~~~~~~~~~~~~~  147 (221)
                        ...+..+++...++
T Consensus       174 ~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        174 GNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccHHHHHHHHHHcCC
Confidence              12345577777664

>cd04151 Arl1 Arl1 subfamily

Probab=99.93  E-value=3.5e-25  Score=158.38  Aligned_cols=150  Identities=21%  Similarity=0.320  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|+|||||++++..+.+.. +.++.+.+...    +++..+.+++|||||+..+...+..++..++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999987776643 34555544332    23356889999999999888888999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +++..++.....+...+...  ..+.|+++++||+|+.+.....+.....     ...+.+++++|+++|.|++++|.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            99988876655554433221  2479999999999986533212211111     1223579999999999999999998


Q ss_pred             HH
Q 027593          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      ++
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            75

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.93  E-value=2.1e-25  Score=160.87  Aligned_cols=151  Identities=24%  Similarity=0.382  Sum_probs=112.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      +|+++|++|||||||+++++....      ...+.++.+....    .+...+..+.+|||||+..+...+..++..+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~----~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG----TIEVGNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceE----EEEECCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999664322      1222333333332    222246899999999999888888889999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-------HhcCceEEEeecCCCCC
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-------RKKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~~  159 (221)
                      +++|+|+++..++.....|+..+...  ..+.|+++++||+|+.......+.....       ....++++++||++|.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            99999999998888877777766553  2479999999999986543222222222       12356899999999999


Q ss_pred             hHHHHHHHHH
Q 027593          160 FEKPFLYLAR  169 (221)
Q Consensus       160 i~~~~~~l~~  169 (221)
                      +++++.+|+.
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999998864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.93  E-value=1.1e-24  Score=158.08  Aligned_cols=157  Identities=24%  Similarity=0.429  Sum_probs=123.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+++||+++|+.||||||+++++..+... ...||.|........    .++.+.+||++|+..++..|..|+..++++
T Consensus        11 ~~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~i   85 (175)
T PF00025_consen   11 KKKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGI   85 (175)
T ss_dssp             TTSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred             cCcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeecccccee
Confidence            477899999999999999999997655433 355666655544433    568899999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH---HH---HhcCceEEEeecCCCCChH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT---FH---RKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~---~~---~~~~~~~~~~s~~~~~~i~  161 (221)
                      |+|+|+++...+.+....+..+...  ..+.|+++++||+|..+.....+...   +.   ....+.++.+|+.+|.|+.
T Consensus        86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~  165 (175)
T PF00025_consen   86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVD  165 (175)
T ss_dssp             EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHH
T ss_pred             EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHH
Confidence            9999999998888777666666543  35799999999999876433222211   11   2346678999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          162 KPFLYLARKL  171 (221)
Q Consensus       162 ~~~~~l~~~l  171 (221)
                      +.+.||...+
T Consensus       166 e~l~WL~~~~  175 (175)
T PF00025_consen  166 EGLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhcC
Confidence            9999998764

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.93  E-value=1.1e-24  Score=155.79  Aligned_cols=150  Identities=23%  Similarity=0.376  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|||||||+++++.+. ...+.++.+.+......    ....+.+||+||+..+...+..++..++++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999977766 34455666655544332    46789999999999988888999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +++..++.....|+..+...  ..+.|+++++||+|+.......+.....     ....++++++|+++|.|++++|.+|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            99999998887777766553  2578999999999987543222222221     2245689999999999999999888


Q ss_pred             HH
Q 027593          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            64

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=1.5e-24  Score=158.19  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC-------CCCcccC------CceeEeeeEEEEe-----cCeEEEEEEEeCCCccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~~   76 (221)
                      +|+++|++|+|||||+++|+...       +...+.+      +.|++.......+     ++..+.+.+|||||+..+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            68999999999999999987632       1111222      3355555544333     5567889999999999998


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEee
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS  153 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~s  153 (221)
                      ..+..++..+|++++|+|+++..++.....|.....   .+.|+++|+||+|+.+........++....++   .++++|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence            888889999999999999998777666655543322   37899999999998643221112234444444   489999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027593          154 AKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l  171 (221)
                      |++|.|++++|.+|.+.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.92  E-value=2.1e-24  Score=158.03  Aligned_cols=155  Identities=17%  Similarity=0.266  Sum_probs=116.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+++|++|||||||++++..+.+. .+.++.+.+...    +...++.+.+||+||+..+...+..++..+++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEE----LAIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEE----EEECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            45699999999999999999998776553 334444443322    2224688999999999988888899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH---H---------hcCceEEEeecCC
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH---R---------KKNLQYYEISAKS  156 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~---~---------~~~~~~~~~s~~~  156 (221)
                      +|+|++++.++.....++..+...  ..+.|+++++||+|+.......+..+..   .         .....++.+|+++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            999999999988877777666542  2578999999999986432222211111   1         1234689999999


Q ss_pred             CCChHHHHHHHHHH
Q 027593          157 NYNFEKPFLYLARK  170 (221)
Q Consensus       157 ~~~i~~~~~~l~~~  170 (221)
                      +.|+++++.+|...
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.92  E-value=5e-24  Score=153.86  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc---------cccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~---------~~~~   84 (221)
                      .+|+++|++|+|||||+++++.+.+..  .+..+.+.......+...++.+.+|||||+........         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999988765532  22233333333333344568999999999743111000         1112


Q ss_pred             CccEEEEEEeCCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593           85 HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ..+++++|+|+++..++  .....|+..+.....+.|+++|+||+|+.......+...+....+.+++++||++|.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            35899999999987654  4445677766655558999999999999653322222344444567899999999999999


Q ss_pred             HHHHHHHHH
Q 027593          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      ++.+|.+.|
T Consensus       159 l~~~l~~~~  167 (168)
T cd01897         159 VKNKACELL  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.92  E-value=5.7e-24  Score=151.71  Aligned_cols=150  Identities=24%  Similarity=0.415  Sum_probs=116.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeC
Q 027593           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~   95 (221)
                      |+++|++|||||||++++..+.+...+.++.+......  .  .+.+.+.+||+||+..+...+..++..++++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~--~--~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKV--T--KGNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEE--E--ECCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            79999999999999999888888777777776554432  2  2348899999999998888888999999999999999


Q ss_pred             CChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ++..++.....|+..+...  ..+.|+++++||+|+............     ......+++++|+++|.|+++++.+|.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            9998887777666665432  247899999999998654322221111     122346789999999999999999886


Q ss_pred             H
Q 027593          169 R  169 (221)
Q Consensus       169 ~  169 (221)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.92  E-value=5.8e-24  Score=145.38  Aligned_cols=157  Identities=20%  Similarity=0.356  Sum_probs=127.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      ++++|.++|..||||||++++ +.+.......|+.|........    ..+.+.+||++|+...+..|..||..+|++|+
T Consensus        15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            389999999999999999999 5566667777787766655544    67899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCCCcccccHH------HHHHHHhcCceEEEeecCCCCChHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~i~v~nk~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      |+|++++..|++....+..+..  ...+.|+++++||.|+...-...+      .......+.++.+.||+.+|+++.+-
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            9999999998776654444322  234789999999999985322221      12344667889999999999999999


Q ss_pred             HHHHHHHHhC
Q 027593          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      +.||...++.
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>cd04155 Arl3 Arl3 subfamily

Probab=99.92  E-value=4.8e-24  Score=154.68  Aligned_cols=156  Identities=17%  Similarity=0.312  Sum_probs=114.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.++|+++|++|||||||++++....+ ..+.++.|.+....  ..  .+..+.+||++|+..+...+..+++.+++
T Consensus        10 ~~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i--~~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~   84 (173)
T cd04155          10 KSSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTV--QS--DGFKLNVWDIGGQRAIRPYWRNYFENTDC   84 (173)
T ss_pred             ccCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEE--EE--CCEEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence            345589999999999999999999665443 33455666444332  22  35789999999998887777888899999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhc-----CceEEEeecCCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~  161 (221)
                      +++|+|+++..++.....+...+...  ..+.|+++++||+|+.......+........     ...++++||++|.|++
T Consensus        85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~  164 (173)
T cd04155          85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQ  164 (173)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHH
Confidence            99999999988887777666555433  2479999999999986532222211111111     1247899999999999


Q ss_pred             HHHHHHHH
Q 027593          162 KPFLYLAR  169 (221)
Q Consensus       162 ~~~~~l~~  169 (221)
                      ++|++|++
T Consensus       165 ~~~~~l~~  172 (173)
T cd04155         165 EGMNWVCK  172 (173)
T ss_pred             HHHHHHhc
Confidence            99999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.5e-23  Score=162.16  Aligned_cols=167  Identities=15%  Similarity=0.061  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~~   86 (221)
                      +|+++|.+|||||||+|++++.. .....+.+++|..........++..+.+|||||.......        ...++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~-~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc-EeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            68999999999999999976544 3344556666666554444444567999999997543211        23456889


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH-HHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~-~~~~~s~~~~~~i~~~~  164 (221)
                      |++++|+|+++..+..  ..+...+..  .+.|+++|+||+|+.......+ ...+....+. +++++||++|.|+++++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~  156 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA  156 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence            9999999999876653  333333333  3789999999999964322222 2233333333 78999999999999999


Q ss_pred             HHHHHHHhCCCCCccccCCCCC
Q 027593          165 LYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      ..|...+...|.++..+..+..
T Consensus       157 ~~l~~~l~~~~~~~~~~~~t~~  178 (270)
T TIGR00436       157 AFIEVHLPEGPFRYPEDYVTDQ  178 (270)
T ss_pred             HHHHHhCCCCCCCCCCcccCCC
Confidence            9999998877766644444433

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01898 Obg Obg subfamily

Probab=99.92  E-value=7.6e-24  Score=153.15  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccc----cccccccc---ccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~----~~~~~~~~---~~~~   86 (221)
                      +|+++|.+|||||||++++.....  ......+.++......+...+ ..+.+|||||...    .......+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            689999999999999999765432  122223334333333333233 4899999999642    12222333   3459


Q ss_pred             cEEEEEEeCCCh-hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHh-cCceEEEeecCCCCCh
Q 027593           87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 ~~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~~i  160 (221)
                      |++++|+|+++. .++..+..|.+.+....   ...|+++|+||+|+.......+.. ..... .+.+++.+|++++.|+
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            999999999999 78888888888876653   368999999999986543333322 33344 2678999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|.+|.+.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999998874

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK15494 era GTPase Era; Provisional

Probab=99.91  E-value=3.3e-23  Score=164.58  Aligned_cols=170  Identities=17%  Similarity=0.244  Sum_probs=118.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-ccccc-------cc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRD-------GY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~-------~~   82 (221)
                      .+.++|+++|.+|||||||+|+|++..+ ..+.+..++|+......+...+..+.+|||||.... .....       ..
T Consensus        50 ~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~  128 (339)
T PRK15494         50 QKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS  128 (339)
T ss_pred             cceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence            4567999999999999999999876554 344556666666554444445568899999998532 22211       23


Q ss_pred             ccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc--CceEEEeecCCCCC
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISAKSNYN  159 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~  159 (221)
                      +..+|++++|+|+.+  ++.... .|+..+...  +.|.++|+||+|+.... ..+..+.....  ...++++||++|.|
T Consensus       129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~g  203 (339)
T PRK15494        129 LHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGKN  203 (339)
T ss_pred             hhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCccC
Confidence            678999999999765  455543 344444332  56778999999986532 22233333333  25799999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593          160 FEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       160 i~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      +++++.+|...+...|.++.-|..+..
T Consensus       204 v~eL~~~L~~~l~~~~~~~~~~~~td~  230 (339)
T PRK15494        204 IDGLLEYITSKAKISPWLYAEDDITDL  230 (339)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            999999999999888877754444433

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.91  E-value=1.5e-25  Score=155.30  Aligned_cols=163  Identities=32%  Similarity=0.570  Sum_probs=149.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ..-+|++|+|..++||||++.+|+.|.|-..+..++|++.-..++.+.+..+++.+||++|++++......|++.+++.+
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~v   97 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASV   97 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceE
Confidence            34699999999999999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +||+-+|+.||+....|.+.+......+|.++|-||.|+.+. ....+ ...+++.++..++.+|++...++..+|..|+
T Consensus        98 LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLa  177 (246)
T KOG4252|consen   98 LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLA  177 (246)
T ss_pred             EEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHH
Confidence            999999999999999999999999999999999999999764 44443 3467888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      ..+.+
T Consensus       178 eK~~q  182 (246)
T KOG4252|consen  178 EKLTQ  182 (246)
T ss_pred             HHHHH
Confidence            88765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.90  E-value=2.9e-22  Score=142.62  Aligned_cols=156  Identities=27%  Similarity=0.469  Sum_probs=119.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|++|+|||||+++++.+.+...+.++.+.+.........+....+.+||+||+..+...+..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            37999999999999999999888876555555666665555566666568999999999988888888888889999999


Q ss_pred             EeCCCh-hhhccHH-HHHHHHHhhcC-CCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +|.... .++.... .|...+..... +.|+++++||+|+.......... .+......+++++|+..+.|+.+++.+|-
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            998877 6665554 56666655544 78999999999997643233222 23333356799999999999999988763

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=2.6e-23  Score=145.83  Aligned_cols=147  Identities=16%  Similarity=0.210  Sum_probs=106.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~   85 (221)
                      ++|+++|.|+||||||+|++++.+  ......+|+|.......+...+..+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            689999999999999999966544  446778888888888777766689999999995433222      22333  57


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      .|++++|+|+++.+.-..+   ..++...  ++|+++++||+|... .....+...+...++++++++||.++.|+++++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e~--g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLEL--GIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHHT--TSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHHc--CCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            8999999999986433322   2233332  899999999999864 334445667777889999999999999999988


Q ss_pred             HHH
Q 027593          165 LYL  167 (221)
Q Consensus       165 ~~l  167 (221)
                      ..|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            765

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PTZ00099 rab6; Provisional

Probab=99.90  E-value=4.2e-22  Score=144.42  Aligned_cols=141  Identities=31%  Similarity=0.553  Sum_probs=121.4

Q ss_pred             CCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc
Q 027593           36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC  115 (221)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~  115 (221)
                      +.|...+.+|.|.++....+.+++..+.+.+|||+|++.+...+..+++.++++++|||++++.+|..+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788899999988888889999999999999999999999999999999999999999999999999999886654


Q ss_pred             -CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCC
Q 027593          116 -ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       116 -~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~  176 (221)
                       +..|+++|+||+|+.. +.+.. +....+...+..++++||++|.|++++|.+|++.+...+.
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~~  146 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLDN  146 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence             5789999999999964 33333 3446667778899999999999999999999999876553

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=1e-22  Score=142.80  Aligned_cols=162  Identities=24%  Similarity=0.352  Sum_probs=133.4

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ......+.+|+++|..++||||++.++-.+..... .||.|.......+    .++++++||.+|+..++..|..|+.+.
T Consensus        11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t   85 (181)
T KOG0070|consen   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNT   85 (181)
T ss_pred             hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCC
Confidence            34577899999999999999999999777777655 7888877776666    589999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCC
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~  159 (221)
                      +++|+|+|.+|++.+.+.+..+..+....  ...|+++++||.|+++.-...+..     .........+..++|.+|.|
T Consensus        86 ~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   86 QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            99999999999999988877766665554  588999999999998754433222     12223456788899999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      +.+.++++...+..
T Consensus       166 L~egl~wl~~~~~~  179 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998754

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=1.7e-22  Score=159.51  Aligned_cols=160  Identities=18%  Similarity=0.130  Sum_probs=119.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccccc----ccccc---cccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG----GLRDG---YYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~----~~~~~---~~~~   85 (221)
                      ..|+|+|.++||||||+++++...  +.....+++|..+....+.. ....+.+||+||.....    .+...   .+..
T Consensus       159 adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~  236 (335)
T PRK12299        159 ADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIER  236 (335)
T ss_pred             CCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhh
Confidence            579999999999999999976543  33455666777777665543 45679999999975321    22222   3557


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccc-cHHHH-HHHHhcCceEEEeecCCCCCh
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAKQV-TFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~-~~~~~-~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      ++++++|+|+++..+++.+..|...+..+.   .++|+++|+||+|+..... ..+.. .+....+.+++++||+++.|+
T Consensus       237 a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI  316 (335)
T PRK12299        237 TRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGL  316 (335)
T ss_pred             cCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCH
Confidence            899999999998878888888988887654   3689999999999865332 22222 233445678999999999999


Q ss_pred             HHHHHHHHHHHhCCC
Q 027593          161 EKPFLYLARKLAGDP  175 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~  175 (221)
                      ++++.+|.+.+...+
T Consensus       317 ~eL~~~L~~~l~~~~  331 (335)
T PRK12299        317 DELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999999999876543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.89  E-value=1e-22  Score=143.05  Aligned_cols=133  Identities=19%  Similarity=0.202  Sum_probs=94.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc-----cccccccccccCccEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA   89 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-----~~~~~~~~~~~~~~~~   89 (221)
                      ||+++|++|||||||+++|..+.+.  +.++.+.       .+     .-.+|||||+.     .+..... .++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~-----~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EY-----NDGAIDTPGEYVENRRLYSALIV-TAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EE-----cCeeecCchhhhhhHHHHHHHHH-HhhcCCEE
Confidence            8999999999999999997765431  2222221       11     11689999973     2232222 47899999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-HHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ++|+|++++.++... .|....     ..|+++++||+|+.+.....+. .++....+. +++++||++|.|++++|.+|
T Consensus        67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            999999999998663 444322     3499999999998654333332 344555555 79999999999999999887


Q ss_pred             H
Q 027593          168 A  168 (221)
Q Consensus       168 ~  168 (221)
                      +
T Consensus       141 ~  141 (142)
T TIGR02528       141 N  141 (142)
T ss_pred             h
Confidence            4

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd01878 HflX HflX subfamily

Probab=99.89  E-value=2e-22  Score=150.08  Aligned_cols=156  Identities=15%  Similarity=0.081  Sum_probs=107.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccccccc--------ccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGL--------RDG   81 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~--------~~~   81 (221)
                      .+.++|+|+|++|||||||+++++.+.....  ...+.+.......+.. +...+.+|||||.......        ...
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~  116 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLE  116 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHH
Confidence            4458999999999999999999776653221  1122222222222221 2238999999997321110        011


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      .+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.......   ........+++++|++++.|+
T Consensus       117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~gi  193 (204)
T cd01878         117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGEGL  193 (204)
T ss_pred             HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCCCH
Confidence            2568899999999999988877777776665543 468999999999986533221   334455678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027593          161 EKPFLYLARKL  171 (221)
Q Consensus       161 ~~~~~~l~~~l  171 (221)
                      ++++.+|...|
T Consensus       194 ~~l~~~L~~~~  204 (204)
T cd01878         194 DELLEAIEELL  204 (204)
T ss_pred             HHHHHHHHhhC
Confidence            99999988753

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.89  E-value=3.2e-22  Score=143.65  Aligned_cols=149  Identities=15%  Similarity=0.065  Sum_probs=98.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC---CCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      .|+++|.+|||||||+++|+..   .+.....+....+.......+.. +..+.+|||||++.+......++..+|++++
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~   80 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLL   80 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEEE
Confidence            6899999999999999997642   22211112222222222233321 4689999999998887666667889999999


Q ss_pred             EEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc----cHHHHHHHHh---cCceEEEeecCCCCChH
Q 027593           92 MFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFE  161 (221)
Q Consensus        92 v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~~i~  161 (221)
                      |+|+++.   .++..+    ..+ ......|+++++||+|+.....    ..+..+....   .+.+++++|++++.|++
T Consensus        81 V~d~~~~~~~~~~~~~----~~~-~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  155 (164)
T cd04171          81 VVAADEGIMPQTREHL----EIL-ELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE  155 (164)
T ss_pred             EEECCCCccHhHHHHH----HHH-HHhCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence            9999873   222222    111 1112359999999999965321    1122222222   46789999999999999


Q ss_pred             HHHHHHHH
Q 027593          162 KPFLYLAR  169 (221)
Q Consensus       162 ~~~~~l~~  169 (221)
                      +++..+.+
T Consensus       156 ~l~~~l~~  163 (164)
T cd04171         156 ELKEYLDE  163 (164)
T ss_pred             HHHHHHhh
Confidence            99988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.89  E-value=7.2e-22  Score=148.60  Aligned_cols=165  Identities=34%  Similarity=0.518  Sum_probs=133.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ++.+||+++|+.|||||||+++|..+.+...+.++.+..............+.+.+|||+|++.++..+..++..+++++
T Consensus         3 ~~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l   82 (219)
T COG1100           3 MKEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGIL   82 (219)
T ss_pred             cceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEE
Confidence            45599999999999999999999999998888888887777777766666889999999999999999999999999999


Q ss_pred             EEEeCCCh-hhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccc-------------cHHH-HHHHHh---cCceEEE
Q 027593           91 IMFDVTAR-LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-------------KAKQ-VTFHRK---KNLQYYE  151 (221)
Q Consensus        91 ~v~d~~~~-~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~-------------~~~~-~~~~~~---~~~~~~~  151 (221)
                      +|+|..+. .+++....|...+.... ...|+++++||+|+.....             .... ......   ....++.
T Consensus        83 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (219)
T COG1100          83 IVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLE  162 (219)
T ss_pred             EEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeE
Confidence            99999994 45555678998888876 3799999999999976432             1111 111111   1334899


Q ss_pred             eecC--CCCChHHHHHHHHHHHhCCC
Q 027593          152 ISAK--SNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       152 ~s~~--~~~~i~~~~~~l~~~l~~~~  175 (221)
                      +|+.  .+.++.++|..+.+.+....
T Consensus       163 ~s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         163 TSAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             eecccCCCcCHHHHHHHHHHHHHHhh
Confidence            9999  99999999999999886543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=6.6e-22  Score=161.64  Aligned_cols=153  Identities=23%  Similarity=0.248  Sum_probs=113.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------cccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   82 (221)
                      .+.++|+++|++|+|||||+|+|+... .......+|++.+.....+...+..+.+|||||.......        ...+
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~-~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQD-RAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            356899999999999999999976543 2334455676766665555445677899999998654332        2356


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +..+|++++|+|++++.++...  |+..+..  .+.|+++|+||+|+...    +...+....+++++.+|+++ .|+++
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence            7899999999999988776654  5544432  37899999999999643    11233455667889999997 69999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      ++..|.+.+..
T Consensus       351 ~~~~L~~~i~~  361 (442)
T TIGR00450       351 LVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.88  E-value=3.8e-22  Score=147.36  Aligned_cols=146  Identities=16%  Similarity=0.218  Sum_probs=105.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCCCcc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR   79 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   79 (221)
                      -+|+++|.+|+|||||+++|+.  +.+...+            ..+.|.+.......+.++...+.+|||||+..+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3899999999999999999886  4443332            2346667777666777778899999999999998888


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCceE
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQY  149 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~~  149 (221)
                      ..+++.+|++++|+|+++.. +.....++.....  .+.|+++|+||+|+......   .+.....       ...++++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV  159 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence            89999999999999998742 2222233333222  37899999999999643221   1112222       2236789


Q ss_pred             EEeecCCCCChHH
Q 027593          150 YEISAKSNYNFEK  162 (221)
Q Consensus       150 ~~~s~~~~~~i~~  162 (221)
                      +++|+++|.|+.+
T Consensus       160 v~~Sa~~g~~~~~  172 (194)
T cd01891         160 LYASAKNGWASLN  172 (194)
T ss_pred             EEeehhccccccc
Confidence            9999999988743

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=1.3e-21  Score=157.45  Aligned_cols=162  Identities=15%  Similarity=0.105  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccccccc-------ccccccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGL-------RDGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~-------~~~~~~~~   86 (221)
                      .|+|+|.+|||||||+|+++..+  +...+.+++|..+....+...+ ..+.++||||.......       ....+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            79999999999999999976543  3567778888888877665443 46999999997642211       11236788


Q ss_pred             cEEEEEEeCC---ChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHhcC--ceEEEeecCCC
Q 027593           87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN--LQYYEISAKSN  157 (221)
Q Consensus        87 ~~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~~  157 (221)
                      +++++|+|++   ....+.....|...+....   ..+|.++|+||+|+.......+.. .+....+  ..++.+||+++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            9999999988   4456666677777766543   368999999999986533222222 2333333  46899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCc
Q 027593          158 YNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~  178 (221)
                      .++++++..|...+...+.++
T Consensus       319 ~GIdeLl~~I~~~L~~~~~~~  339 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPREE  339 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcccC
Confidence            999999999999887776554

>PRK04213 GTP-binding protein; Provisional

Probab=99.88  E-value=4.7e-22  Score=147.70  Aligned_cols=153  Identities=20%  Similarity=0.182  Sum_probs=99.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc-----------ccccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR   79 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-----------~~~~~~~   79 (221)
                      ...++|+++|++|||||||+|++.++.+.  ....++++.........    .+.+|||||.           +.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            45689999999999999999998766543  23345666665544332    5899999993           4444444


Q ss_pred             ccccc----CccEEEEEEeCCChhhhcc---------H-HHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc
Q 027593           80 DGYYI----HGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK  145 (221)
Q Consensus        80 ~~~~~----~~~~~i~v~d~~~~~s~~~---------~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~  145 (221)
                      ..++.    .++++++|+|.+....+..         . ..+...+..  .+.|+++|+||+|+.... .....++....
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~  157 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL  157 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence            44443    3467788888764322100         0 011111211  379999999999986433 11222333333


Q ss_pred             Cc---------eEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          146 NL---------QYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       146 ~~---------~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ++         +++++||++| |+++++.+|.+.+..
T Consensus       158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            43         5799999999 999999999998654

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.88  E-value=1.1e-21  Score=161.15  Aligned_cols=151  Identities=18%  Similarity=0.188  Sum_probs=112.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------cccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~   82 (221)
                      ...++|+++|.+|+|||||+|+|+.... ....+..+++.+.....+...+..+.+|||||...+...        ...+
T Consensus       213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~  291 (449)
T PRK05291        213 REGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREA  291 (449)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence            3468999999999999999999775442 223445666666555444445578899999998654332        2235


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +..+|++++|+|++++.++.....|..     ..+.|+++|+||+|+.......      ...+.+++++|+++|.|+++
T Consensus       292 ~~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~  360 (449)
T PRK05291        292 IEEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDE  360 (449)
T ss_pred             HHhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHH
Confidence            788999999999999887775544443     3478999999999996432111      33456899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      ++.+|.+.+..
T Consensus       361 L~~~L~~~l~~  371 (449)
T PRK05291        361 LREAIKELAFG  371 (449)
T ss_pred             HHHHHHHHHhh
Confidence            99999998753

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=4.5e-21  Score=144.64  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=128.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~   81 (221)
                      .++.--|+++|.|++|||||+|+ +.|......++.+.+|+......+...+.++.++||||....+...        ..
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~-l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNA-LVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHH-HhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            46677899999999999999999 6677778889999999999998888889999999999977654332        22


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc-HHHHHHHH--hcCceEEEeecCCCC
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHR--KKNLQYYEISAKSNY  158 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~-~~~~~~~~--~~~~~~~~~s~~~~~  158 (221)
                      .+..+|++++|+|+.....-. ....++.+..  .+.|+++++||.|....... ....+...  ......+++||+.|.
T Consensus        82 sl~dvDlilfvvd~~~~~~~~-d~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPG-DEFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             HhccCcEEEEEEeccccCCcc-HHHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            377899999999998754432 1222333332  35799999999998764442 22222222  223479999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPA  184 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~  184 (221)
                      +++.+...+...|..+|.++.-|.-+
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp~d~it  184 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYPEDQIT  184 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCChhhcc
Confidence            99999999999999988877444333

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.88  E-value=2.3e-21  Score=138.14  Aligned_cols=147  Identities=18%  Similarity=0.153  Sum_probs=106.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      ++|+++|++|+|||||+++++.... ....+..+++.......+...+..+.+|||||...+...        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            6899999999999999999765543 222334455544444444434578999999997655332        1234678


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++++++|+|++++.+..+...+..     ....|+++|+||+|+......     .......+++.+|++++.|+++++.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~  150 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE  150 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence            999999999998877666554433     347999999999998754322     3344467899999999999999999


Q ss_pred             HHHHHH
Q 027593          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|...+
T Consensus       151 ~l~~~~  156 (157)
T cd04164         151 ALLELA  156 (157)
T ss_pred             HHHHhh
Confidence            988743

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.87  E-value=3.1e-21  Score=152.30  Aligned_cols=156  Identities=16%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCccccc----cccccc---ccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFG----GLRDGY---YIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~----~~~~~~---~~~   85 (221)
                      ..|+|+|.++||||||++++.....  .....+++|..+....+...+ ..+.+||+||.....    .+...+   +..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            6799999999999999999765442  233444555555554444333 789999999975322    222333   446


Q ss_pred             ccEEEEEEeCCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCCC
Q 027593           86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        86 ~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++++++|+|+++.   .++.++..|...+....   ..+|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            8999999999976   67777777777766543   478999999999997543222222 3444557789999999999


Q ss_pred             ChHHHHHHHHHHH
Q 027593          159 NFEKPFLYLARKL  171 (221)
Q Consensus       159 ~i~~~~~~l~~~l  171 (221)
                      |+++++.+|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.87  E-value=3.5e-21  Score=137.48  Aligned_cols=147  Identities=16%  Similarity=0.112  Sum_probs=102.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cCccEE
Q 027593           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCA   89 (221)
Q Consensus        18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~   89 (221)
                      |+|.+|+|||||++++........  ...+++.......+...+..+.+|||||+..+...      +..++  ..++++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            589999999999999776543322  23344443333333333468999999998766542      34445  489999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ++|+|+++.....   .+...+..  .++|+++++||+|+.+.. ...+...+....+++++++|+.++.|+++++..+.
T Consensus        79 i~v~d~~~~~~~~---~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          79 VNVVDATNLERNL---YLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             EEEeeCCcchhHH---HHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            9999998764422   33333332  378999999999996543 22333355566688999999999999999999988


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       154 ~~~  156 (158)
T cd01879         154 ELA  156 (158)
T ss_pred             HHh
Confidence            753

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.87  E-value=1.5e-21  Score=133.04  Aligned_cols=114  Identities=28%  Similarity=0.536  Sum_probs=89.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ||+|+|++|||||||+++|+.+...  .......+.++......+......+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999998887765  12334455555555666777777799999999998888777779999999999


Q ss_pred             EeCCChhhhccHHH---HHHHHHhhcCCCCEEEEEeCCC
Q 027593           93 FDVTARLTYKNVPT---WHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        93 ~d~~~~~s~~~~~~---~~~~~~~~~~~~p~i~v~nk~D  128 (221)
                      ||+++..++..+..   |+..+....++.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            99999999988754   4555555556899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.87  E-value=3e-21  Score=139.22  Aligned_cols=154  Identities=16%  Similarity=0.159  Sum_probs=103.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      .|+|+|++|+|||||+++|+.+.+.....+....+......... +....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            59999999999999999988776654322222222222222222 13678999999999888777777889999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHH-HHH------HhcCceEEEeecCCCCChHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFH------RKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~-~~~------~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      |+++........ .+..+..  .+.|+++|+||+|+.......  ... ...      ....++++++|++++.|+.+++
T Consensus        82 d~~~~~~~~~~~-~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T cd01887          82 AADDGVMPQTIE-AIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             ECCCCccHHHHH-HHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence            998753221111 1122222  378999999999986432111  111 111      1124689999999999999999


Q ss_pred             HHHHHHH
Q 027593          165 LYLARKL  171 (221)
Q Consensus       165 ~~l~~~l  171 (221)
                      ++|.+..
T Consensus       159 ~~l~~~~  165 (168)
T cd01887         159 EAILLLA  165 (168)
T ss_pred             HHHHHhh
Confidence            9998753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK00089 era GTPase Era; Reviewed

Probab=99.87  E-value=8.4e-21  Score=148.71  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=112.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc--------ccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~   82 (221)
                      ++.-.|+|+|++|||||||+|++++.. .....+.+.++...........+..+.+|||||......        .....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~-~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCc-eeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            456779999999999999999966443 344455555666555544444557899999999754332        22234


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhc-CceEEEeecCCCC
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNY  158 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~  158 (221)
                      +..+|++++|+|+++.  +.....+ ...+..  .+.|+++|+||+|+.. ........ .+.... ...++++|++++.
T Consensus        82 ~~~~D~il~vvd~~~~--~~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEK--IGPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCC--CChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            6789999999999883  2222222 222221  2689999999999973 22222222 232322 3679999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCcccc
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~  181 (221)
                      |+++++..|...+...|.++..+
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~~~  180 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYPED  180 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999999999888777655433

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.87  E-value=5.7e-21  Score=134.77  Aligned_cols=150  Identities=39%  Similarity=0.662  Sum_probs=116.1

Q ss_pred             EEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC
Q 027593           18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        18 v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   96 (221)
                      |+|++|+|||||+++++.... .....++. ................+.+||++|+..+......++..++++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999776665 23333444 5666666666667889999999998888777788889999999999999


Q ss_pred             ChhhhccHHHHH--HHHHhhcCCCCEEEEEeCCCCCcccccHH---HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        97 ~~~s~~~~~~~~--~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +..++.....|.  ..........|+++++||+|+........   ..........+++.+|+..+.|+++++.+|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999988887762  22233346899999999999876443332   2234455578999999999999999998875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.87  E-value=3.8e-21  Score=162.33  Aligned_cols=156  Identities=15%  Similarity=0.167  Sum_probs=116.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC-------CCCccc------CCceeEeeeEEEEe-----cCeEEEEEEEeCCCcccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYE------PTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~-------~~~~~~------~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~   75 (221)
                      -+|+++|+.++|||||+++|+...       +...+.      ...|.+.......+     ++..+.+.+|||||+..|
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            479999999999999999988642       112222      23477777655544     355689999999999999


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEe
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (221)
                      ...+..++..+|++++|+|+++...+.....|.....   .+.|+++|+||+|+..........++....++   .++++
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v  160 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA  160 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence            8888889999999999999999877766666654433   37899999999998653222112233333444   48999


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027593          153 SAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ||++|.|+++++.+|.+.+.
T Consensus       161 SAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       161 SAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             eccCCCCHHHHHHHHHHhCC
Confidence            99999999999999998653

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=8.8e-21  Score=153.41  Aligned_cols=159  Identities=16%  Similarity=0.187  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccc----cccccc---ccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----GLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----~~~~~~---~~~~   86 (221)
                      .|+|+|.++||||||+++++...  +.....+++|..+....+... ...+.+||+||.....    .+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak--~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAK--PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCC--CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            89999999999999999976544  233455667777765555433 5789999999975321    222333   4568


Q ss_pred             cEEEEEEeCCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 ~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      +++++|+|+++.   .++.+...|...+..+.   ..+|.++|+||+|+....  .....+....+.+++++||+++.|+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~~--e~l~~l~~~l~~~i~~iSA~tgeGI  315 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEAE--ENLEEFKEKLGPKVFPISALTGQGL  315 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCCH--HHHHHHHHHhCCcEEEEeCCCCCCH
Confidence            999999999864   56666677777776653   378999999999985321  2223344445578999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 027593          161 EKPFLYLARKLAGDPNL  177 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~  177 (221)
                      ++++.+|.+.+...+..
T Consensus       316 ~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        316 DELLYAVAELLEETPEF  332 (424)
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999988776643

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=3.6e-21  Score=159.60  Aligned_cols=153  Identities=22%  Similarity=0.220  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------ccccccccccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~   85 (221)
                      .+|+|+|.+|||||||+|+|+.+.. .....++|++.......+...+..+.+|||||...        +...+..++..
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999776543 34456777777666655554556789999999763        22233456789


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~  164 (221)
                      +|++++|+|+++..++.. ..+...+..  .+.|+++|+||+|+.....  +.... ...++ ..+++||++|.|++++|
T Consensus       118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~-~~~g~~~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAAL-WSLGLGEPHPVSALHGRGVGDLL  191 (472)
T ss_pred             CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHH-HhcCCCCeEEEEcCCCCCcHHHH
Confidence            999999999998766543 233444433  3799999999999864321  11111 12222 34789999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      .+|+..+..
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999998754

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.86  E-value=3.4e-21  Score=139.95  Aligned_cols=151  Identities=15%  Similarity=0.111  Sum_probs=104.2

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccc----cccc---cccccCccEE
Q 027593           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLR---DGYYIHGQCA   89 (221)
Q Consensus        18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~~~---~~~~~~~~~~   89 (221)
                      ++|++|||||||++++.....  ......+++.......+... +..+.+|||||....    ....   ..++..++++
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999776543  22233344444433333333 678899999996431    2222   2346789999


Q ss_pred             EEEEeCCCh------hhhccHHHHHHHHHhhc--------CCCCEEEEEeCCCCCcccccHHH--HHHHHhcCceEEEee
Q 027593           90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~i~v~nk~D~~~~~~~~~~--~~~~~~~~~~~~~~s  153 (221)
                      ++|+|+++.      .++.....|...+....        ...|+++|+||+|+.........  ..........++.+|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999988      46776666766665432        37899999999999653322222  233344467899999


Q ss_pred             cCCCCChHHHHHHHHHH
Q 027593          154 AKSNYNFEKPFLYLARK  170 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~  170 (221)
                      ++++.|++++++.+.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.86  E-value=4.6e-21  Score=152.58  Aligned_cols=153  Identities=15%  Similarity=0.094  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCccc--ccccc------ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEK--FGGLR------DGY   82 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~--~~~~~------~~~   82 (221)
                      ..++|+++|.+|+|||||+|+|++....  .....+.|.......+.. ++..+.+|||+|...  .....      ...
T Consensus       188 ~~~~ValvG~~NvGKSSLln~L~~~~~~--v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~  265 (351)
T TIGR03156       188 DVPTVALVGYTNAGKSTLFNALTGADVY--AADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE  265 (351)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCcee--eccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHH
Confidence            3489999999999999999997765432  223334444444433322 346899999999722  11111      123


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.....    .........+++.+||++|.|++
T Consensus       266 ~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~----v~~~~~~~~~~i~iSAktg~GI~  341 (351)
T TIGR03156       266 VREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR----IERLEEGYPEAVFVSAKTGEGLD  341 (351)
T ss_pred             HHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh----HHHHHhCCCCEEEEEccCCCCHH
Confidence            678999999999999888777666655554432 3789999999999864211    11111122468999999999999


Q ss_pred             HHHHHHHHH
Q 027593          162 KPFLYLARK  170 (221)
Q Consensus       162 ~~~~~l~~~  170 (221)
                      +++..|...
T Consensus       342 eL~~~I~~~  350 (351)
T TIGR03156       342 LLLEAIAER  350 (351)
T ss_pred             HHHHHHHhh
Confidence            999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>cd01894 EngA1 EngA1 subfamily

Probab=99.86  E-value=6e-21  Score=135.99  Aligned_cols=147  Identities=20%  Similarity=0.143  Sum_probs=101.3

Q ss_pred             EEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc--------cccccccCccE
Q 027593           17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC   88 (221)
Q Consensus        17 ~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------~~~~~~~~~~~   88 (221)
                      +++|.+|+|||||+++++.... .......+++...........+..+.+|||||...+..        .....+..+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            5899999999999999765432 22233445555444444444457899999999876443        22345778999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +++|+|+.+..+.... .+...+..  .+.|+++|+||+|+......   .......+. .++++|++++.|+++++.+|
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  153 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI  153 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence            9999999876554432 12222222  26999999999999764322   222233455 78999999999999999999


Q ss_pred             HHH
Q 027593          168 ARK  170 (221)
Q Consensus       168 ~~~  170 (221)
                      .+.
T Consensus       154 ~~~  156 (157)
T cd01894         154 LEL  156 (157)
T ss_pred             Hhh
Confidence            875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.1e-20  Score=155.02  Aligned_cols=158  Identities=19%  Similarity=0.250  Sum_probs=110.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------cccc-c
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR-D   80 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~-~   80 (221)
                      ..++|+++|.+|+|||||+|+|+.... ....+..|++.......+...+..+.+|||||..+.          .... .
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            469999999999999999999876553 233456666665554444334456789999996322          1111 2


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HH--HHHHhcCceEEEeecC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV--TFHRKKNLQYYEISAK  155 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~--~~~~~~~~~~~~~s~~  155 (221)
                      .+++.+|++++|+|+++..++.++.. ...+..  .+.|+++|+||+|+........   ..  .+.....++++++||+
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~~-~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk  365 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQRV-LSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAK  365 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHHH-HHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECC
Confidence            34679999999999999888776643 333322  3789999999999964321111   11  1122234689999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027593          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~~  173 (221)
                      +|.|++++|..+.+.+..
T Consensus       366 ~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        366 TGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999997654

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.86  E-value=1.5e-20  Score=139.63  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC--cccCCceeEeeeEEEEec-----------------------------C---
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTN-----------------------------C---   59 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-----------------------------~---   59 (221)
                      ++|+++|+.|+|||||+..+. +....  ......+.+.......+.                             +   
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~-~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALS-GVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGET   79 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHh-CCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcc
Confidence            479999999999999999854 33111  111111222211111111                             0   


Q ss_pred             -eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH-
Q 027593           60 -GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-  137 (221)
Q Consensus        60 -~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~-  137 (221)
                       ...++.+|||||++.+...+...+..+|++++|+|++++.........+..+ ......|+++++||+|+........ 
T Consensus        80 ~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~  158 (203)
T cd01888          80 KLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL-EIMGLKHIIIVQNKIDLVKEEQALEN  158 (203)
T ss_pred             ccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH-HHcCCCcEEEEEEchhccCHHHHHHH
Confidence             1268999999999887776666778889999999998742111111122222 1122457999999999965321111 


Q ss_pred             --H-HHHHHh---cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          138 --Q-VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       138 --~-~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                        . .+....   .+.+++++|+++|.|+++++..|...+..
T Consensus       159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence              1 122222   25689999999999999999999886644

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.86  E-value=8.8e-21  Score=139.28  Aligned_cols=154  Identities=18%  Similarity=0.125  Sum_probs=107.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccC--------------CceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      +|+|+|.+|+|||||+++++..........              ..+.+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999776655432211              122333333333344467899999999888877778


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---H-HHHHHH-------------
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---K-QVTFHR-------------  143 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~-~~~~~~-------------  143 (221)
                      .++..+|++++|+|+.+....... .++.....  .+.|+++++||+|+.......   . ..+...             
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR  157 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence            888999999999999876544322 23333322  489999999999997522111   1 111221             


Q ss_pred             -hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          144 -KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       144 -~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                       ....+++++|++.|.|+++++.+|.+.+
T Consensus       158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         158 NGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence             2357899999999999999999999876

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.85  E-value=1.1e-20  Score=139.29  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=98.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC----CCCCc-ccCCceeEeeeE--EEEec------------CeEEEEEEEeCCCccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTG----EFEKK-YEPTIGVEVHPL--DFFTN------------CGKIRFYCWDTAGQEK   74 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~----~~~~~-~~~~~~~~~~~~--~~~~~------------~~~~~~~~~D~~g~~~   74 (221)
                      ++|+++|++|+|||||+++|+..    .+... .....|.+....  ...+.            +.+..+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            58999999999999999998752    11111 011112222221  12222            3367899999999865


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH-HH-H------H
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TF-H------R  143 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~-~~-~------~  143 (221)
                      +..........+|++++|+|+++.........+..  ... .+.|+++++||+|+.......   +.. +. .      .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~--~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI--GEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH--HHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            43333333567799999999987544333222221  111 267999999999986432111   111 11 1      1


Q ss_pred             hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          144 KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ..+++++++|+++|.|+++++..|...+.
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            24678999999999999999999998765

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=9.6e-20  Score=157.37  Aligned_cols=154  Identities=14%  Similarity=0.140  Sum_probs=118.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----------c
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------D   80 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----------~   80 (221)
                      |+.++|+++|++|||||||+|++.+...  ...+.+|+|.......+...+..+.+|||||...+....          .
T Consensus         1 ~~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~   78 (772)
T PRK09554          1 MKKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (772)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHH
Confidence            4568999999999999999999765433  456678999998888888888899999999987654321          1


Q ss_pred             ccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCC
Q 027593           81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      .++  ..+|++++|+|+++.+...   .+...+.+.  +.|+++++||+|+.+ +....+..++....+++++++|+.++
T Consensus        79 ~~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g  153 (772)
T PRK09554         79 HYILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRG  153 (772)
T ss_pred             HHHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecC
Confidence            222  3789999999999865422   233333332  799999999999864 34444455667778999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027593          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~~i~~~~~~l~~~l  171 (221)
                      .|++++++.+....
T Consensus       154 ~GIdeL~~~I~~~~  167 (772)
T PRK09554        154 RGIEALKLAIDRHQ  167 (772)
T ss_pred             CCHHHHHHHHHHhh
Confidence            99999999888764

>cd01895 EngA2 EngA2 subfamily

Probab=99.85  E-value=5.5e-20  Score=133.04  Aligned_cols=154  Identities=19%  Similarity=0.203  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc-----------ccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG   81 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~~~   81 (221)
                      .++|+++|.+|+|||||+++++..... ......+++.......+...+..+.+|||||.......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERV-IVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCccce-eccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            589999999999999999997765432 11223333333333333223456889999996543111           122


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--ccHHHH-HHHHhc----CceEEEeec
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA  154 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--~~~~~~-~~~~~~----~~~~~~~s~  154 (221)
                      .+..+|++++|+|++++.+......+ .....  .+.|+++++||+|+....  ...... ......    ..+++++|+
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLRIA-GLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHHHH-HHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            35688999999999988776544322 22221  378999999999986542  111111 222222    368999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 027593          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (221)
                      +++.|+.+++..+.+.
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999999988764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.85  E-value=4.8e-20  Score=151.86  Aligned_cols=158  Identities=18%  Similarity=0.178  Sum_probs=110.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------   79 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------   79 (221)
                      ...++|+++|.+|+|||||+|+++.... ....+..|++.......+...+..+.+|||||........           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4568999999999999999999775442 2234456667666555554445689999999976544322           


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHH----hcCceEEEee
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHR----KKNLQYYEIS  153 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~----~~~~~~~~~s  153 (221)
                      ..++..+|++++|+|++++.+......+ .....  .+.|+++|+||+|+.. .....+.. ....    ...++++++|
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~-~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLRIA-GLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHHHH-HHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            2357889999999999988776554332 22222  3789999999999972 21111111 1111    1247899999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 027593          154 AKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~  172 (221)
                      |++|.|++++|.++.+.+.
T Consensus       326 A~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988664

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.85  E-value=5.1e-21  Score=128.66  Aligned_cols=155  Identities=22%  Similarity=0.375  Sum_probs=123.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      .+..+.++|..+||||||+|....|.+..+..++.|......+    .+++.+.+||.+|+..++..|..|.+.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~t----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKVT----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEec----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            3578999999999999999987777887877888886655544    478999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHH-----hcCceEEEeecCCCCChHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      |+|+.+++.....+.-+..+....  .++|+++++||.|+++.....+......     ...+.+|-+|++...+++...
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~  174 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL  174 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence            999999877766555444443332  5899999999999987544333332222     223568999999999999999


Q ss_pred             HHHHHH
Q 027593          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      +||...
T Consensus       175 ~Wli~h  180 (186)
T KOG0075|consen  175 DWLIEH  180 (186)
T ss_pred             HHHHHH
Confidence            998874

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.85  E-value=4.5e-20  Score=151.16  Aligned_cols=160  Identities=16%  Similarity=0.119  Sum_probs=113.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc----c---ccccccC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----L---RDGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----~---~~~~~~~   85 (221)
                      -..|+|+|.++||||||+|+|+..+  +.....+++|..+....+...+..+.+||+||......    +   ....+..
T Consensus       159 ~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhier  236 (500)
T PRK12296        159 VADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIER  236 (500)
T ss_pred             cceEEEEEcCCCCHHHHHHHHhcCC--ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHh
Confidence            4689999999999999999976543  33455677787777776766668999999999643211    1   1223567


Q ss_pred             ccEEEEEEeCCCh----hhhccHHHHHHHHHhhc------------CCCCEEEEEeCCCCCcccccHHH-HHHHHhcCce
Q 027593           86 GQCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQ  148 (221)
Q Consensus        86 ~~~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~~  148 (221)
                      ++++++|+|+++.    ..+.++..+...+..+.            ..+|.++|+||+|+.+.....+. .......+++
T Consensus       237 advLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~  316 (500)
T PRK12296        237 CAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWP  316 (500)
T ss_pred             cCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCe
Confidence            8999999999863    34444555554443332            36899999999999653222222 2233345789


Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      ++++|++++.|+++++.+|...+...
T Consensus       317 Vf~ISA~tgeGLdEL~~~L~ell~~~  342 (500)
T PRK12296        317 VFEVSAASREGLRELSFALAELVEEA  342 (500)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999987554

>cd04163 Era Era subfamily

Probab=99.84  E-value=9.8e-20  Score=130.77  Aligned_cols=155  Identities=15%  Similarity=0.106  Sum_probs=102.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~   83 (221)
                      ...+|+++|++|+|||||++++++... .........+..............+.+|||||.......        ....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCce-EeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            468999999999999999999665432 222223333333333344445678999999997643322        23347


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhc-CceEEEeecCCCCCh
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF  160 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~~i  160 (221)
                      ..++++++|+|+++..... ...+...+...  +.|+++++||+|+.. .....+.. ...... ..+++.+|++++.++
T Consensus        81 ~~~d~i~~v~d~~~~~~~~-~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          81 KDVDLVLFVVDASEPIGEG-DEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             HhCCEEEEEEECCCccCch-HHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            7889999999999872211 12222333322  689999999999973 22222222 233333 368899999999999


Q ss_pred             HHHHHHHHHH
Q 027593          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      ++++..|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.84  E-value=1.9e-20  Score=133.63  Aligned_cols=139  Identities=16%  Similarity=0.071  Sum_probs=94.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i   90 (221)
                      +|+++|++|+|||||+|++. +.+.. ...+.       ...+...    .+|||||.......+    ...+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCCcc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999944 44321 11111       1222222    269999973222111    22367899999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCCCChHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +|+|+++..++..  .|+..+   ..+.|+++++||+|+.+.. .....++....+  .+++++|+++|.|++++|..+.
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence            9999998877643  343332   2367999999999986532 222334455555  4899999999999999999998


Q ss_pred             HHHh
Q 027593          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       144 ~~~~  147 (158)
T PRK15467        144 SLTK  147 (158)
T ss_pred             Hhch
Confidence            8664

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.84  E-value=2.9e-20  Score=135.60  Aligned_cols=153  Identities=15%  Similarity=0.123  Sum_probs=100.9

Q ss_pred             CCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------
Q 027593            3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------   74 (221)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------   74 (221)
                      ++..+......++|+++|++|+|||||+|+++...+...+.++.+.+........+   ..+.+|||||...        
T Consensus         8 ~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~   84 (179)
T TIGR03598         8 VKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN---DGFRLVDLPGYGYAKVSKEEK   84 (179)
T ss_pred             ccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC---CcEEEEeCCCCccccCChhHH
Confidence            33445566778999999999999999999987765555666677777665544433   2689999999532        


Q ss_pred             --cccccccccc---CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHHHhc
Q 027593           75 --FGGLRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK  145 (221)
Q Consensus        75 --~~~~~~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~~~~  145 (221)
                        +......+++   .++++++|+|++.+.+..+.. +...+..  .++|+++++||+|+.......    +........
T Consensus        85 ~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~  161 (179)
T TIGR03598        85 EKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKD  161 (179)
T ss_pred             HHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhc
Confidence              2222233443   357999999998764444432 2222222  278999999999986432111    111223332


Q ss_pred             --CceEEEeecCCCCChH
Q 027593          146 --NLQYYEISAKSNYNFE  161 (221)
Q Consensus       146 --~~~~~~~s~~~~~~i~  161 (221)
                        ...++++||++|.|++
T Consensus       162 ~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       162 ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             cCCCceEEEECCCCCCCC
Confidence              2479999999999874

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.84  E-value=1.1e-19  Score=134.42  Aligned_cols=158  Identities=15%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----------cccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGL   78 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~   78 (221)
                      .....++|+++|++|+|||||+++++.+.+...+.++.|.+........   +..+.+|||||...          +...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            4456789999999999999999998876666667777777665544332   36799999999532          2222


Q ss_pred             ccccccC---ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH-HHHHhcCceEEE
Q 027593           79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV-TFHRKKNLQYYE  151 (221)
Q Consensus        79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~-~~~~~~~~~~~~  151 (221)
                      ...++..   .+++++++|+..+...... .+...+..  .+.|+++++||+|+.......   +.. .........+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            2333433   3678888887765433221 11122221  278999999999986532211   111 222223678999


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027593          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +|++++.|+++++..|...+.
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987654

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.84  E-value=1e-19  Score=144.91  Aligned_cols=175  Identities=17%  Similarity=0.155  Sum_probs=128.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc--------ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD--------GYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~--------~~~   83 (221)
                      ..++|+++|.||+|||||+|. +.+.-...++.-+|+|++.....++-+++.+.++||+|..+......        ..+
T Consensus       216 ~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i  294 (454)
T COG0486         216 EGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAI  294 (454)
T ss_pred             cCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHHH
Confidence            368999999999999999998 66777788899999999999999998999999999999776544433        237


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      ..+|.+++|+|++....-.+... ..   ....++|+++|.||.|+.........   ....+.+.+.+|++++.|++.+
T Consensus       295 ~~ADlvL~v~D~~~~~~~~d~~~-~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~L  367 (454)
T COG0486         295 EEADLVLFVLDASQPLDKEDLAL-IE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDAL  367 (454)
T ss_pred             HhCCEEEEEEeCCCCCchhhHHH-HH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHHH
Confidence            79999999999998632222111 11   23347999999999999865432222   2233457899999999999999


Q ss_pred             HHHHHHHHhCCCCCccccCCCCCCcccccchHH
Q 027593          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAA  196 (221)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~  196 (221)
                      ...|.+.+...  ....+.+.....++..-.++
T Consensus       368 ~~~i~~~~~~~--~~~~~~~~i~~~Rh~~~L~~  398 (454)
T COG0486         368 REAIKQLFGKG--LGNQEGLFLSNLRHIQLLEQ  398 (454)
T ss_pred             HHHHHHHHhhc--ccccccceeecHHHHHHHHH
Confidence            99999977654  22233444444444333333

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=1.5e-20  Score=138.11  Aligned_cols=157  Identities=18%  Similarity=0.154  Sum_probs=107.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCC----------------cccCCceeEeeeEEEEec--CeEEEEEEEeCCCcc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~   73 (221)
                      +.++|+++|+.++|||||+.+|+......                ......+.+.......+.  .....+.++||||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            56899999999999999999987533211                011123344444444444  677899999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH---H-HHHHhc----
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ---V-TFHRKK----  145 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~---~-~~~~~~----  145 (221)
                      .|.......+..+|++++|+|+.+....... ..+.....  .+.|+++|+||+|+.........   . .+....    
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~-~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE-EHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH-HHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeecccccccccc-cccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            8877777778999999999999976433222 22222222  27889999999999742222111   1 121111    


Q ss_pred             --CceEEEeecCCCCChHHHHHHHHHHH
Q 027593          146 --NLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       146 --~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                        ..+++++|+++|.|+..+++.|.+.+
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence              36899999999999999999998865

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK11058 GTPase HflX; Provisional

Probab=99.83  E-value=6.2e-20  Score=149.32  Aligned_cols=156  Identities=17%  Similarity=0.144  Sum_probs=106.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccc--ccccc------cccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF--GGLRD------GYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~--~~~~~------~~~~   84 (221)
                      ++|+++|.+|||||||+|+++.....  .....++|.......+.. +...+.+|||+|....  ...+.      ..+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            68999999999999999997765432  223334444444333322 2237789999997331  22222      2257


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCce-EEEeecCCCCChHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~  162 (221)
                      .+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+......  .... ...+.+ ++.+||++|.|+++
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~-~~~~~~~~v~ISAktG~GIde  352 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDR-DEENKPIRVWLSAQTGAGIPL  352 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHH-HhcCCCceEEEeCCCCCCHHH
Confidence            8999999999999988777765555554432 37899999999998643111  1111 123444 48899999999999


Q ss_pred             HHHHHHHHHhCC
Q 027593          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      ++++|...+...
T Consensus       353 L~e~I~~~l~~~  364 (426)
T PRK11058        353 LFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHhhhc
Confidence            999999987543

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.83  E-value=3.1e-19  Score=150.21  Aligned_cols=155  Identities=13%  Similarity=0.114  Sum_probs=105.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+..+|+++|+.++|||||+++|..+.+.....+....+.....+...+ ...+.+|||||+..|...+...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~-~~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED-GKMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC-CcEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            34568999999999999999999887666543332222222223333322 22889999999999988888888999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHH-------hc--CceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KK--NLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-------~~--~~~~~~~s~~~~~~i  160 (221)
                      ++|+|+++.........+. ...  ..+.|+++++||+|+..... .+......       ..  ..+++++||++|.|+
T Consensus       163 ILVVda~dgv~~qT~e~i~-~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI  238 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAIS-HAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  238 (587)
T ss_pred             EEEEECCCCCCHhHHHHHH-HHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence            9999998753222222221 111  13789999999999864321 11111111       11  257999999999999


Q ss_pred             HHHHHHHHH
Q 027593          161 EKPFLYLAR  169 (221)
Q Consensus       161 ~~~~~~l~~  169 (221)
                      ++++.+|..
T Consensus       239 ~eLl~~I~~  247 (587)
T TIGR00487       239 DELLDMILL  247 (587)
T ss_pred             HHHHHhhhh
Confidence            999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=9.8e-20  Score=150.22  Aligned_cols=148  Identities=22%  Similarity=0.159  Sum_probs=103.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------cccccccccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~~~   85 (221)
                      ++|+++|.+|||||||+|+|+.... .......|++.......+...+..+.+|||||....        ......++..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            5899999999999999999765543 233445666655554444434588999999998761        2223445788


Q ss_pred             ccEEEEEEeCCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593           86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  162 (221)
                      +|++++|+|+++..+...  +..|+.   ..  +.|+++|+||+|.....   .........++ .++++||.+|.|+.+
T Consensus        81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~---~~~~~~~~lg~~~~~~iSa~~g~gv~~  152 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE---ADAYEFYSLGLGEPYPISAEHGRGIGD  152 (435)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch---hhHHHHHhcCCCCCEEEEeeCCCCHHH
Confidence            999999999987644322  223333   22  78999999999975421   12222234455 489999999999999


Q ss_pred             HHHHHHHH
Q 027593          163 PFLYLARK  170 (221)
Q Consensus       163 ~~~~l~~~  170 (221)
                      ++..+...
T Consensus       153 l~~~I~~~  160 (435)
T PRK00093        153 LLDAILEE  160 (435)
T ss_pred             HHHHHHhh
Confidence            99999873

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=2e-19  Score=120.12  Aligned_cols=158  Identities=21%  Similarity=0.320  Sum_probs=123.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ..-++++|+.+|..++||||++..+..+.. ....+|.|......++    .++.+.+||.+|+.+.+..|++|+....+
T Consensus        13 f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gtqg   87 (180)
T KOG0071|consen   13 FGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGTQG   87 (180)
T ss_pred             hCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCCce
Confidence            345689999999999999999999765543 4455677766655544    78999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +|||+|+.++...++.+..+..+...  ....|+++.+||.|+.+.....+..     +..+....-..++++.+|.|+.
T Consensus        88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~  167 (180)
T KOG0071|consen   88 LIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDGLK  167 (180)
T ss_pred             EEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchhHH
Confidence            99999999987777666555554443  2478999999999998755444322     2234445678899999999999


Q ss_pred             HHHHHHHHHH
Q 027593          162 KPFLYLARKL  171 (221)
Q Consensus       162 ~~~~~l~~~l  171 (221)
                      +-|.+|...+
T Consensus       168 eglswlsnn~  177 (180)
T KOG0071|consen  168 EGLSWLSNNL  177 (180)
T ss_pred             HHHHHHHhhc
Confidence            9999988754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.82  E-value=1.4e-19  Score=149.09  Aligned_cols=152  Identities=20%  Similarity=0.174  Sum_probs=109.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--------ccccccccccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--------~~~~~~~~~~~~   86 (221)
                      +|+++|.+|||||||+|+|+... ...+....|++.......+...+..+.+|||||...        +......++..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999976554 344556777777766665555567899999999632        233345567899


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  165 (221)
                      |++++|+|+.+....... .+...+..  .++|+++|+||+|+.......   ......++ .++++||..|.|+.+++.
T Consensus        80 d~vl~vvD~~~~~~~~d~-~i~~~l~~--~~~piilVvNK~D~~~~~~~~---~~~~~lg~~~~~~vSa~~g~gv~~ll~  153 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDE-EIAKWLRK--SGKPVILVANKIDGKKEDAVA---AEFYSLGFGEPIPISAEHGRGIGDLLD  153 (429)
T ss_pred             CEEEEEEeCCCCCCHHHH-HHHHHHHH--hCCCEEEEEECccCCcccccH---HHHHhcCCCCeEEEeCCcCCChHHHHH
Confidence            999999999875443321 22223333  278999999999986533221   22334555 799999999999999999


Q ss_pred             HHHHHHhC
Q 027593          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      .+.+.+..
T Consensus       154 ~i~~~l~~  161 (429)
T TIGR03594       154 AILELLPE  161 (429)
T ss_pred             HHHHhcCc
Confidence            99987744

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.82  E-value=2.5e-19  Score=151.55  Aligned_cols=157  Identities=14%  Similarity=0.167  Sum_probs=114.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC--CC-----Cc------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KK------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~--~~-----~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~   74 (221)
                      .-+++++|+.++|||||+.+|+...  ..     ..      .....|.+.......+     ++..+.+.+|||||+..
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3489999999999999999987532  11     11      1224466666554444     34578999999999999


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEE
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE  151 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~  151 (221)
                      +...+..++..+|++++|+|+++.........|.....   .+.|+++|+||+|+..........++....++   .+++
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~  163 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL  163 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence            98888889999999999999998766555555543322   37899999999998653222111223333344   4899


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027593          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +||++|.|+++++.+|.+.+.
T Consensus       164 iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        164 VSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             EecCCCCCHHHHHHHHHHhCc
Confidence            999999999999999998653

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.82  E-value=7.1e-19  Score=132.50  Aligned_cols=187  Identities=16%  Similarity=0.173  Sum_probs=132.0

Q ss_pred             CCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------
Q 027593            4 PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------   77 (221)
Q Consensus         4 ~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------   77 (221)
                      .+++....+.+.|+|+|.|++|||||.|.++ |......+....+|.......+..+..++.++||||.-....      
T Consensus        63 srde~e~~k~L~vavIG~PNvGKStLtN~mi-g~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l  141 (379)
T KOG1423|consen   63 SRDEEEAQKSLYVAVIGAPNVGKSTLTNQMI-GQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHL  141 (379)
T ss_pred             CCCchhcceEEEEEEEcCCCcchhhhhhHhh-CCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHH
Confidence            3455567889999999999999999999955 555556677777888888888888889999999999443211      


Q ss_pred             ------cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--------------ccHH
Q 027593           78 ------LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAK  137 (221)
Q Consensus        78 ------~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--------------~~~~  137 (221)
                            .......++|.+++++|+++........ .+..+.. ..+.|-++|.||.|.....              ....
T Consensus       142 ~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~-vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~  219 (379)
T KOG1423|consen  142 MMSVLQNPRDAAQNADCVVVVVDASATRTPLHPR-VLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL  219 (379)
T ss_pred             HHHhhhCHHHHHhhCCEEEEEEeccCCcCccChH-HHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence                  1223366899999999999744333222 2222222 2478999999999964321              1100


Q ss_pred             HHHHH-----------------HhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccc
Q 027593          138 QVTFH-----------------RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID  193 (221)
Q Consensus       138 ~~~~~-----------------~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~  193 (221)
                      ..+..                 +.+.-.+|.+|+++|+|++++.++|......+|..+..+-++..++++...
T Consensus       220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l~~  292 (379)
T KOG1423|consen  220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFLCS  292 (379)
T ss_pred             hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHHHH
Confidence            01110                 011124899999999999999999999999999988888888776665433

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.82  E-value=6.3e-19  Score=145.44  Aligned_cols=158  Identities=16%  Similarity=0.146  Sum_probs=110.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc-----------c
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R   79 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~-----------~   79 (221)
                      ...++|+++|.+|+|||||+|+++... .....+..|++.......+...+..+.+|||||.......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~-~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEE-RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            357999999999999999999976543 2234456677777766655555677899999996543221           1


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HH----HHhcCceEEEeec
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TF----HRKKNLQYYEISA  154 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~----~~~~~~~~~~~s~  154 (221)
                      ..++..+|++++|+|++++.+..+...+ ..+..  .++|+++++||+|+.+.....+.. ..    .....++++++||
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~-~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA  326 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLRIA-GLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA  326 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence            2356789999999999988666554332 22222  278999999999987432221111 11    1123578999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 027593          155 KSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~  172 (221)
                      ++|.|+.+++..+.+...
T Consensus       327 ~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999887554

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.81  E-value=1.9e-19  Score=143.04  Aligned_cols=152  Identities=19%  Similarity=0.102  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------cccccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~   84 (221)
                      ..|+++|.||+|||||+|+ +.+.....+..++|+|++.........+..+.++||+|.....         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNR-L~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNR-LTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHH-HhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            6899999999999999999 5566678888999999999888777777889999999976422         22334477


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP  163 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~  163 (221)
                      .+|+++||+|.....+-.+. .....++  ..++|+++|+||+|...   ..+.......+|+ ..+.+||..|.|+.++
T Consensus        83 eADvilfvVD~~~Git~~D~-~ia~~Lr--~~~kpviLvvNK~D~~~---~e~~~~efyslG~g~~~~ISA~Hg~Gi~dL  156 (444)
T COG1160          83 EADVILFVVDGREGITPADE-EIAKILR--RSKKPVILVVNKIDNLK---AEELAYEFYSLGFGEPVPISAEHGRGIGDL  156 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHH-HHHHHHH--hcCCCEEEEEEcccCch---hhhhHHHHHhcCCCCceEeehhhccCHHHH
Confidence            89999999999876544321 1222222  23799999999999862   2223333445555 7899999999999999


Q ss_pred             HHHHHHHHh
Q 027593          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      .+++...+.
T Consensus       157 ld~v~~~l~  165 (444)
T COG1160         157 LDAVLELLP  165 (444)
T ss_pred             HHHHHhhcC
Confidence            999999873

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.81  E-value=4.3e-19  Score=151.56  Aligned_cols=157  Identities=20%  Similarity=0.245  Sum_probs=107.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .+..+|+|+|+.++|||||+++|..+.+.....+....+....  .....+.+..+.+|||||+..|...+..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            4568999999999999999999876655432222221111122  22223456899999999999998888888999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHHH----HHHhc--CceEEEeecCCCCCh
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVT----FHRKK--NLQYYEISAKSNYNF  160 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~~----~~~~~--~~~~~~~s~~~~~~i  160 (221)
                      +++|+|+++.........|.. +.  ..+.|+++++||+|+.......  ..+.    .....  .++++++||++|.|+
T Consensus       322 aILVVDA~dGv~~QT~E~I~~-~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI  398 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAINY-IQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI  398 (742)
T ss_pred             EEEEEECcCCCChhhHHHHHH-HH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence            999999987543333222221 11  1378999999999987532211  1111    01112  368999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      ++++..|...
T Consensus       399 deLle~I~~l  408 (742)
T CHL00189        399 DKLLETILLL  408 (742)
T ss_pred             HHHHHhhhhh
Confidence            9999988774

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.81  E-value=1.1e-18  Score=150.31  Aligned_cols=155  Identities=14%  Similarity=0.168  Sum_probs=108.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+...|+|+|+.++|||||+++|..+.+....  ..|.+.......+...+..+.+|||||+..|...+...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            456789999999999999999998766554332  234444443333333357899999999999988888888899999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHHH----HHHhc--CceEEEeecCCCCChH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVT----FHRKK--NLQYYEISAKSNYNFE  161 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~~----~~~~~--~~~~~~~s~~~~~~i~  161 (221)
                      ++|+|+++.........|.. ..  ..+.|+++++||+|+.......  ..+.    .....  .++++++||++|.|++
T Consensus       365 ILVVdAddGv~~qT~e~i~~-a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~  441 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAINH-AK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID  441 (787)
T ss_pred             EEEEECCCCCCHhHHHHHHH-HH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence            99999987533222222221 11  1378999999999996532111  1111    11122  3689999999999999


Q ss_pred             HHHHHHHH
Q 027593          162 KPFLYLAR  169 (221)
Q Consensus       162 ~~~~~l~~  169 (221)
                      +++.+|..
T Consensus       442 eLle~I~~  449 (787)
T PRK05306        442 ELLEAILL  449 (787)
T ss_pred             HHHHhhhh
Confidence            99998875

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.81  E-value=5.7e-19  Score=119.97  Aligned_cols=166  Identities=23%  Similarity=0.374  Sum_probs=141.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .--.+||+++|.+..|||||+-.|+++.+...+..+.|+....+++.+.+..+.+.+||.+|++++.......-..+-++
T Consensus        17 n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaI   96 (205)
T KOG1673|consen   17 NLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAI   96 (205)
T ss_pred             cceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEE
Confidence            34479999999999999999999999999888888999999999999999999999999999999988888888899999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-------cccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +++||.+.+.....+..|...-+...+..-=|++++|.|.--.       .+.......+.-.+.+.|++|+...-++++
T Consensus        97 lFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~K  176 (205)
T KOG1673|consen   97 LFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQK  176 (205)
T ss_pred             EEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHHH
Confidence            9999999999999999998887777654444678999996321       122234466777889999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027593          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|..+..++..-|
T Consensus       177 IFK~vlAklFnL~  189 (205)
T KOG1673|consen  177 IFKIVLAKLFNLP  189 (205)
T ss_pred             HHHHHHHHHhCCc
Confidence            9999888886643

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.81  E-value=2.9e-18  Score=116.28  Aligned_cols=162  Identities=21%  Similarity=0.344  Sum_probs=130.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc--ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-cccccccccCccE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQC   88 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~~~~~~~~~~~~~   88 (221)
                      +..||+++|..++|||+++.+++.|.....  ..+|+...|....-+-++-.-.+.++||.|...+ ..+-.+|+.-+|+
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aDa   87 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFADA   87 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCce
Confidence            468999999999999999999887776443  3455554444333333455567999999998776 6677889999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      +++||+..+++||..+..+..++.+..  ...|+++++||+|+.+ +.+..+ ...|+....+..+++++.+...+-+.|
T Consensus        88 fVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~epf  167 (198)
T KOG3883|consen   88 FVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEPF  167 (198)
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhHH
Confidence            999999999999998887777776654  3689999999999964 444444 457888899999999999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      ..++..+.+
T Consensus       168 ~~l~~rl~~  176 (198)
T KOG3883|consen  168 TYLASRLHQ  176 (198)
T ss_pred             HHHHHhccC
Confidence            999998765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=9.1e-19  Score=151.65  Aligned_cols=155  Identities=25%  Similarity=0.223  Sum_probs=109.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------cccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~   83 (221)
                      ...+|+++|.+|||||||+|+|+... ......++|++...........+..+.+|||||....        ......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~-~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRR-EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            35789999999999999999976543 3445667888888777665555678999999997632        22234457


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  162 (221)
                      ..+|++++|+|+++...... ..|...+..  .+.|+++|+||+|+.....  ....+ ...+. ..+++||++|.|+.+
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~-~~lg~~~~~~iSA~~g~GI~e  426 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEF-WKLGLGEPYPISAMHGRGVGD  426 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHH-HHcCCCCeEEEECCCCCCchH
Confidence            89999999999986432211 134444433  4899999999999864321  11121 12222 357899999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      ++.+|+..+..
T Consensus       427 Ll~~i~~~l~~  437 (712)
T PRK09518        427 LLDEALDSLKV  437 (712)
T ss_pred             HHHHHHHhccc
Confidence            99999998754

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=9.6e-19  Score=143.65  Aligned_cols=156  Identities=19%  Similarity=0.158  Sum_probs=106.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------------------cccCCceeEeeeEEEEecC
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNC   59 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   59 (221)
                      .+++.++|+++|++++|||||+++|+...-  ..                           ......|+|.+.....+..
T Consensus         2 ~~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~   81 (425)
T PRK12317          2 KEKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET   81 (425)
T ss_pred             CCCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec
Confidence            367889999999999999999999873211  00                           1122567888888777877


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c---
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K---  135 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~---  135 (221)
                      .+..+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||+|+..... .   
T Consensus        82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~  161 (425)
T PRK12317         82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEE  161 (425)
T ss_pred             CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHH
Confidence            889999999999987766555557889999999999874233222222222222233356899999999964211 1   


Q ss_pred             --HHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593          136 --AKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       136 --~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  164 (221)
                        .+...+....+     .+++++|+++|.|+.+.+
T Consensus       162 ~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        162 VKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence              11122333333     579999999999998744

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.80  E-value=8e-19  Score=148.39  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=106.3

Q ss_pred             cCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc------ccccc--cCccEEEE
Q 027593           20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII   91 (221)
Q Consensus        20 G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~------~~~~~--~~~~~~i~   91 (221)
                      |.+|||||||+|++.+...  ...+.+|+|.......+..++..+.+|||||+..+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999776553  34556777777766555545567899999998876543      23333  36899999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+|+++.+..   ..+...+.+  .+.|+++++||+|+.++ ....+...+.+..+++++++|+++|.|++++++.+.+.
T Consensus        79 VvDat~ler~---l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        79 VVDASNLERN---LYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EecCCcchhh---HHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            9999875321   222222222  37999999999998543 33344456677788999999999999999999999886


Q ss_pred             H
Q 027593          171 L  171 (221)
Q Consensus       171 l  171 (221)
                      .
T Consensus       154 ~  154 (591)
T TIGR00437       154 I  154 (591)
T ss_pred             h
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=9.4e-20  Score=126.05  Aligned_cols=164  Identities=23%  Similarity=0.346  Sum_probs=122.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .+..|.|+|+|+.++|||||+.+ +...+...+    ...+..+......++.-++..+.+||..|++..+++|..|+..
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~~   92 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYWL   92 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHHH
Confidence            45578999999999999999987 332222111    1122233333444444457889999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhcCceEEEeecCCC
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~~~~~~~~s~~~~  157 (221)
                      ++++++++|+++++.|+.....+..+...  ..+.|+++.+||.|+.+.....+..      +.......++.++|+.+|
T Consensus        93 ~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvSal~g  172 (197)
T KOG0076|consen   93 AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVSALTG  172 (197)
T ss_pred             hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccchhhhc
Confidence            99999999999999998776555544332  3689999999999998754443322      222234578999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 027593          158 YNFEKPFLYLARKLAGD  174 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~  174 (221)
                      +|+++...|+++.+.++
T Consensus       173 egv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  173 EGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             ccHHHHHHHHHHHHhhc
Confidence            99999999999999876

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.80  E-value=1.8e-18  Score=146.12  Aligned_cols=152  Identities=18%  Similarity=0.098  Sum_probs=104.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCC---CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      +.|+++|+.++|||||+++|++..   +....  ..|++.......+...+..+.+||+||++.|...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~--~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEK--KRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHh--cCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            479999999999999999976422   22222  2344444333333333488999999999988877777788999999


Q ss_pred             EEEeCCCh---hhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc----HHHHHHHHhc----CceEEEeecCCCC
Q 027593           91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY  158 (221)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~  158 (221)
                      +|+|+++.   .+++.+    ..+..  .+.| +++|+||+|+.+....    .+...+....    +.+++++|+++|.
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99999984   232222    11211  2567 9999999999753311    1112233322    5789999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027593          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~  173 (221)
                      |+++++..|...+..
T Consensus       153 GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       153 GIGELKKELKNLLES  167 (581)
T ss_pred             CchhHHHHHHHHHHh
Confidence            999999998876543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.80  E-value=9.6e-19  Score=151.51  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=107.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc----------cc-cc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----------GL-RD   80 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----------~~-~~   80 (221)
                      ..++|+++|.+|||||||+|++++... .......|++.......+...+..+.+|||||.....          .. ..
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            458999999999999999999776543 2223455556555544333344567799999964211          11 12


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHh----cCceEEEeecC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRK----KNLQYYEISAK  155 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~----~~~~~~~~s~~  155 (221)
                      ..+..+|++++|+|+++..++.....+. .+..  .++|+++|+||+|+.+........ .....    ...+.+++||+
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~i~~-~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk  604 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLKVMS-MAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK  604 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHHHHH-HHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            2367899999999999987777665432 2222  379999999999996532211111 11111    23467899999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027593          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~~  173 (221)
                      +|.|+++++..+.+.+..
T Consensus       605 tg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        605 TGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999997764

>cd00880 Era_like Era (E

Probab=99.79  E-value=2.2e-18  Score=122.60  Aligned_cols=149  Identities=18%  Similarity=0.229  Sum_probs=101.9

Q ss_pred             EEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccccccc-------ccccCccEE
Q 027593           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRD-------GYYIHGQCA   89 (221)
Q Consensus        18 v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~-------~~~~~~~~~   89 (221)
                      ++|+.|+|||||+++++.... .......+.+........... ...+.+||+||.........       .++..++++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEV-AIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccc-cccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            589999999999999664332 323333444444433333222 57899999999876554333       367899999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-----HHHHHhcCceEEEeecCCCCChHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++|+|+.+........ +......  .+.|+++|+||+|+.........     .........+++++|+.++.|+.+++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~  156 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR  156 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence            9999999886665543 2222222  48999999999998754322222     12233346789999999999999999


Q ss_pred             HHHHHH
Q 027593          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      .++.+.
T Consensus       157 ~~l~~~  162 (163)
T cd00880         157 EALIEA  162 (163)
T ss_pred             HHHHhh
Confidence            988764

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.79  E-value=3e-18  Score=140.74  Aligned_cols=155  Identities=19%  Similarity=0.159  Sum_probs=107.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------cccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|+.++|||||+++|+.  |....                           ......|++.+.....+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            67789999999999999999999875  32211                           01124467777777777777


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-ccc---
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-QVK---  135 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~---  135 (221)
                      +..+.+|||||++.|.......+..+|++++|+|+++..++.... .+...+.......|+++++||+|+.+. ...   
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~  163 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA  163 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence            889999999999887665555678899999999999885432211 111122223334678999999999641 111   


Q ss_pred             --HHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593          136 --AKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       136 --~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  164 (221)
                        .+...+....+     ++++++||++|.|+.+++
T Consensus       164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence              12223343333     679999999999998644

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>PRK10218 GTP-binding protein; Provisional

Probab=99.79  E-value=4.7e-18  Score=143.35  Aligned_cols=157  Identities=16%  Similarity=0.198  Sum_probs=115.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      .-+|+++|+.++|||||+++|+.  +.+...            ...+.|.++......+.+.+..+.+|||||+..|...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999886  433222            1346788888888888888899999999999999988


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHHHHH-------HhcCce
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFH-------RKKNLQ  148 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~~~~-------~~~~~~  148 (221)
                      +..+++.+|++++|+|+.+.........|. ....  .+.|.++++||+|........   +.....       ....++
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~-~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P  161 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQTRFVTK-KAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP  161 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHHHHHHH-HHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence            899999999999999998764332222222 2222  378999999999986533221   111221       123477


Q ss_pred             EEEeecCCCC----------ChHHHHHHHHHHHh
Q 027593          149 YYEISAKSNY----------NFEKPFLYLARKLA  172 (221)
Q Consensus       149 ~~~~s~~~~~----------~i~~~~~~l~~~l~  172 (221)
                      ++++|+.+|.          ++..+++.|...+.
T Consensus       162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             EEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            9999999997          57788877777553

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.78  E-value=1.7e-18  Score=115.91  Aligned_cols=157  Identities=20%  Similarity=0.326  Sum_probs=120.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+++||+++|-.++||||++++ +.+.-+....++.|........   .++.++.+||++|+...+..|..|+.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~---~g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEY---DGTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEee---cCcEEEEEEecCCccccchhhhhhhhccceE
Confidence            46799999999999999999998 6677667777888866655444   2569999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHH-HH----HHHHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK-QV----TFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~-~~----~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      |+|+|.+|...|+++..-+..+...  ....|+.+..||.|+.-.....+ ..    ...+........+|+.++.|+..
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence            9999999999998776544444332  35789999999999754322221 11    12223345678899999999988


Q ss_pred             HHHHHHHH
Q 027593          163 PFLYLARK  170 (221)
Q Consensus       163 ~~~~l~~~  170 (221)
                      -.+++...
T Consensus       170 g~~wv~sn  177 (185)
T KOG0074|consen  170 GSDWVQSN  177 (185)
T ss_pred             cchhhhcC
Confidence            77776653

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.78  E-value=4.9e-18  Score=140.87  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=124.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc------ccccccc-
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------GLRDGYY-   83 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------~~~~~~~-   83 (221)
                      |+..+|+++|.||+|||||+|++.+.+  .....-+|+|...++......+.+++++|.||--...      ...+.|+ 
T Consensus         1 ~~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll   78 (653)
T COG0370           1 MKKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLL   78 (653)
T ss_pred             CCcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHh
Confidence            456789999999999999999965443  4567788999999999998888889999999944322      2223333 


Q ss_pred             -cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                       ...|.++-|.|+++.+..-.+...+.++     +.|++++.|++|..+ ..+..+..++.+.+++|.++++|+.|.|++
T Consensus        79 ~~~~D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~  153 (653)
T COG0370          79 EGKPDLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLE  153 (653)
T ss_pred             cCCCCEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHH
Confidence             3569999999999986654444333333     899999999999865 456667788889999999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027593          162 KPFLYLARKLAGDP  175 (221)
Q Consensus       162 ~~~~~l~~~l~~~~  175 (221)
                      ++...+.+....+.
T Consensus       154 ~l~~~i~~~~~~~~  167 (653)
T COG0370         154 ELKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHHhccccc
Confidence            99988888655443

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.78  E-value=8.4e-18  Score=133.77  Aligned_cols=158  Identities=18%  Similarity=0.218  Sum_probs=118.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------c
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------D   80 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------~   80 (221)
                      ..+||+++|.|++|||||+|+ +.+.......+..|+|++.+...+..++..+.++||+|..+-....           .
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            459999999999999999999 5566677788999999999999988888899999999966432222           2


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHH--HHHHh----cCceEEEee
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQV--TFHRK----KNLQYYEIS  153 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~--~~~~~----~~~~~~~~s  153 (221)
                      ..+..++.+++|+|++.+.+-.+.... ..+..  .++++++++||.|+.+. ....+..  .+...    ...+.+++|
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~ia-~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLRIA-GLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHHHH-HHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            226688999999999988664443322 22222  38999999999998653 2222222  22222    246899999


Q ss_pred             cCCCCChHHHHHHHHHHHhC
Q 027593          154 AKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |+++.++.++|..+......
T Consensus       333 A~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             ecCCCChHHHHHHHHHHHHH
Confidence            99999999999988876543

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.78  E-value=5.8e-18  Score=121.81  Aligned_cols=148  Identities=16%  Similarity=0.150  Sum_probs=98.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------ccccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLRDGYYI   84 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~~~~~~~~   84 (221)
                      .|+++|++|+|||||++.++.+.+.+...++.+.+.........+   .+.+|||||....          ......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999886677676777777666555444433   8899999994332          222223332


Q ss_pred             ---CccEEEEEEeCCChhhhc--cHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHH--HhcCceEEEee
Q 027593           85 ---HGQCAIIMFDVTARLTYK--NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFH--RKKNLQYYEIS  153 (221)
Q Consensus        85 ---~~~~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~--~~~~~~~~~~s  153 (221)
                         +.+.+++++|........  .+..|+...     ..|+++++||+|+.......    ......  .....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-----~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-----GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-----CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               356788898887653222  222333322     68999999999985422211    111112  13456889999


Q ss_pred             cCCCCChHHHHHHHHHH
Q 027593          154 AKSNYNFEKPFLYLARK  170 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~  170 (221)
                      ++++.++.+++..|.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998774

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.78  E-value=3.6e-18  Score=126.78  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=85.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc-cEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~-~~~i~v~   93 (221)
                      +|+++|++|||||||+++|..+.+...+..+. ................+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999988776655433221 111111111113457899999999999888888888898 9999999


Q ss_pred             eCCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCCCc
Q 027593           94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN  131 (221)
Q Consensus        94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~i~v~nk~D~~~  131 (221)
                      |+++. .++.....|+..+...    .+..|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99988 6676666665544322    25899999999999854

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.77  E-value=4.3e-18  Score=143.68  Aligned_cols=155  Identities=16%  Similarity=0.237  Sum_probs=114.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCCc------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      +|+++|+.++|||||+++|+.  |.+...            .....|.|.......+.+.+..+.+|||||+..|...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999885  333221            123457777777777777889999999999999988888


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCceEE
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQYY  150 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~~~  150 (221)
                      .++..+|++++|+|+.+.. ......|+.....  .+.|.++|+||+|+.+....   .+...+.       ....++++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~--~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl  159 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV  159 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHH--CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence            8899999999999998743 2333344444333  37899999999998653221   1222222       22357899


Q ss_pred             EeecCCCC----------ChHHHHHHHHHHHh
Q 027593          151 EISAKSNY----------NFEKPFLYLARKLA  172 (221)
Q Consensus       151 ~~s~~~~~----------~i~~~~~~l~~~l~  172 (221)
                      ++|++.|.          ++..+|+.|...+.
T Consensus       160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             echhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            99999985          78999999888654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.77  E-value=5.6e-19  Score=136.67  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=95.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--Cc--cc------------CCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KK--YE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~--~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      +|+++|++|+|||||+++++.....  ..  ..            ...+.+.......+...+..+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            5899999999999999997642211  00  00            01133333333444456678999999999877777


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCce--EEEeecCC
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEISAKS  156 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~--~~~~s~~~  156 (221)
                      +..++..+|++++|+|++..........|.. ...  .+.|.++++||+|............+....+..  .+.++...
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~-~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLWEF-ADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence            7788899999999999998655443333332 222  278999999999987653322222333334443  34455677


Q ss_pred             CCChHHHHHHH
Q 027593          157 NYNFEKPFLYL  167 (221)
Q Consensus       157 ~~~i~~~~~~l  167 (221)
                      +.++..+.+.+
T Consensus       158 ~~~~~~~vd~~  168 (268)
T cd04170         158 GDDFKGVVDLL  168 (268)
T ss_pred             CCceeEEEEcc
Confidence            77775544433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.77  E-value=1e-17  Score=126.66  Aligned_cols=150  Identities=15%  Similarity=0.067  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-------cccccccCcc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ   87 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~~~   87 (221)
                      +|+++|++|+|||||++++.+...  ......+++.......+...+..+++||+||......       ....+++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            799999999999999999765432  1222334444444444444567899999999754321       1234578999


Q ss_pred             EEEEEEeCCChhh-hccHHHHH--------------------------------------------HHH-----------
Q 027593           88 CAIIMFDVTARLT-YKNVPTWH--------------------------------------------RDL-----------  111 (221)
Q Consensus        88 ~~i~v~d~~~~~s-~~~~~~~~--------------------------------------------~~~-----------  111 (221)
                      ++++|+|+++... ...+...+                                            ..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987542 11111111                                            111           


Q ss_pred             -----------HhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          112 -----------CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       112 -----------~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                                 .....-.|+++|+||+|+....   +...++.  ...++++||+++.|++++|..|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~---~~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIE---ELDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCHH---HHHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       1111235899999999985422   1112332  24589999999999999999999865

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.77  E-value=3e-18  Score=127.77  Aligned_cols=146  Identities=19%  Similarity=0.200  Sum_probs=96.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-C----------------------------cccCCceeEeeeEEEEecCeEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFE-K----------------------------KYEPTIGVEVHPLDFFTNCGKIRFY   65 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (221)
                      +|+++|++|+|||||+++|+...-. .                            ......|++.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            6899999999999999997653211 0                            0011256666666666666777899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c-----HHHH
Q 027593           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-----AKQV  139 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~-----~~~~  139 (221)
                      +|||||+..+.......+..+|++++|+|++....-... ... .+.......++++|+||+|+..... .     .+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~-~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~  158 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHS-YILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL  158 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHH-HHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence            999999987765556668899999999999875321111 111 1112222345788999999864211 1     1112


Q ss_pred             HHHHhcC---ceEEEeecCCCCChHH
Q 027593          140 TFHRKKN---LQYYEISAKSNYNFEK  162 (221)
Q Consensus       140 ~~~~~~~---~~~~~~s~~~~~~i~~  162 (221)
                      .+....+   .+++++||++|.|+.+
T Consensus       159 ~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         159 AFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            2333344   4589999999999885

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.76  E-value=1.3e-18  Score=133.98  Aligned_cols=115  Identities=24%  Similarity=0.274  Sum_probs=83.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CCCCC--------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      +|+++|++|+|||||+++++.  |....              ......|++.......+..++..+.+|||||...+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999864  21110              11234566666666666667889999999999888777


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~  132 (221)
                      +...++.+|++++|+|+.+...-.....| .....  .++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~-~~~~~--~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQTETVW-RQADR--YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCEEEEEECCCCCCC
Confidence            88889999999999999875432222222 22222  37899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=3.3e-17  Score=120.51  Aligned_cols=147  Identities=16%  Similarity=0.068  Sum_probs=98.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      +.++|+++|+.++|||||+++++.....              .......|++.......+...+..+.++||||...+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            4689999999999999999998753110              01122456777776666666778899999999987766


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc-----C
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK-----N  146 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~-----~  146 (221)
                      .....+..+|++++|+|+.....-... .....+..  .+.| +++++||+|+.......+     ........     .
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQTR-EHLLLARQ--VGVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            666668899999999999865322221 22222222  2566 779999999853221111     11222222     4


Q ss_pred             ceEEEeecCCCCChH
Q 027593          147 LQYYEISAKSNYNFE  161 (221)
Q Consensus       147 ~~~~~~s~~~~~~i~  161 (221)
                      ++++++|+++|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            689999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.75  E-value=5.1e-17  Score=114.07  Aligned_cols=163  Identities=21%  Similarity=0.147  Sum_probs=114.4

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----cCCce---eEeeeEEEEec-CeEEEEEEEeCCCccccc
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----EPTIG---VEVHPLDFFTN-CGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~   76 (221)
                      ++...+++.||+|.|+-++||||+++++.........     ....+   +|.......+. +.+..+++++||||++++
T Consensus         3 ~~~~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           3 SAANKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK   82 (187)
T ss_pred             cccccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHH
Confidence            4456788999999999999999999996543321100     00111   11111111111 234778999999999999


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHh--cCceEEEeec
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK--KNLQYYEISA  154 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~--~~~~~~~~s~  154 (221)
                      ..|..+.+.+.++++++|.+.+..+ .....+.-+.. ....|+++++||.|+.+.....+..+....  ...+.+..++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~-~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTS-RNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhh-ccCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence            9999999999999999999999887 22223332222 223999999999999987666654444433  3789999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 027593          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (221)
                      ..+.+..+.+..+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999998877666554

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.75  E-value=2.9e-17  Score=122.81  Aligned_cols=159  Identities=14%  Similarity=0.217  Sum_probs=107.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCccccc-----ccccccccCccE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFG-----GLRDGYYIHGQC   88 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~-----~~~~~~~~~~~~   88 (221)
                      ||+++|++||||||+.+. +++++.+......|.|.......+. .+.+.+.+||+||+..+-     ......++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~v-IF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSV-IFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHH-HHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHH-HHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999997 7777766666667777766655553 456899999999987543     345667999999


Q ss_pred             EEEEEeCCChhhhccHH---HHHHHHHhhcCCCCEEEEEeCCCCCcccccHH--------HHHHHHhcC---ceEEEeec
Q 027593           89 AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKN---LQYYEISA  154 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--------~~~~~~~~~---~~~~~~s~  154 (221)
                      +|+|+|+.......++.   ..+..+.+.+++..+-++++|+|+.......+        ........+   +.++.+|.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999999555444444   44555666678999999999999864322221        113333444   77888888


Q ss_pred             CCCCChHHHHHHHHHHHhCCC
Q 027593          155 KSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      .+ +.+-++|..+++.|..+.
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTH
T ss_pred             cC-cHHHHHHHHHHHHHcccH
Confidence            87 699999999999988543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.75  E-value=8.1e-20  Score=127.73  Aligned_cols=163  Identities=33%  Similarity=0.529  Sum_probs=138.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-EEEEEEeCCCcccccccccccccCccEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      -+++.|+|..|+|||+++.+++.-.+...+..++|++........+... +++++||++||+++.....-|++.+.+.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            4899999999999999999999888887788899988887777666544 589999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccH---HHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~---~~~~~~~~~~~-~~~~~s~~~~~~i~~  162 (221)
                      |||++....|+....|.+.+....     ...|+++..||||........   ...++++.+++ .++++|++.+.++.+
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            999999999999999999986653     246788999999998754433   23366777776 699999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027593          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +-..++..+..+.
T Consensus       185 a~r~lVe~~lvnd  197 (229)
T KOG4423|consen  185 AQRELVEKILVND  197 (229)
T ss_pred             HHHHHHHHHHhhc
Confidence            9999998887654

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.75  E-value=3.1e-17  Score=138.00  Aligned_cols=152  Identities=23%  Similarity=0.263  Sum_probs=100.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEE------------ecCeEEEEEEEeCCCcccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFF------------TNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~------------~~~~~~~~~~~D~~g~~~~   75 (221)
                      +..-|+++|++++|||||+++|....+...    .+.+.|.+.......            +......+.+|||||++.|
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            345799999999999999999876655322    222333332221110            0011123889999999999


Q ss_pred             cccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc-------------HH--
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-------------AK--  137 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~-------------~~--  137 (221)
                      ...+..++..+|++++|+|+++.   .+++.+..    +..  .+.|+++++||+|+......             ..  
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~----l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHH----HHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            88888889999999999999874   33333221    111  37899999999998531000             00  


Q ss_pred             --H---------HHHH--------------HhcCceEEEeecCCCCChHHHHHHHHH
Q 027593          138 --Q---------VTFH--------------RKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       138 --~---------~~~~--------------~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                        .         ..+.              .....+++++||++|.|++++..+|..
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence              0         0001              011368999999999999999988764

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.74  E-value=3e-17  Score=133.77  Aligned_cols=160  Identities=18%  Similarity=0.158  Sum_probs=103.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEE----------------Ee----cC------eEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDF----------------FT----NC------GKI   62 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~----------------~~----~~------~~~   62 (221)
                      +++++|+++|+.++|||||++++. +.+....  ....|.|......                +.    +.      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            578999999999999999999854 3322111  1111222221100                00    11      146


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---HH-
Q 027593           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQ-  138 (221)
Q Consensus        63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~-  138 (221)
                      .+.+||+||++.|...+......+|++++|+|+++..........+..+ ......|+++++||+|+.......   +. 
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            8999999999988777777777889999999999753112222222222 222346789999999987532211   11 


Q ss_pred             HHHHHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       139 ~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ..+...   .+++++++|+++|.|+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            122222   2578999999999999999999988653

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.74  E-value=2.7e-17  Score=112.95  Aligned_cols=133  Identities=20%  Similarity=0.270  Sum_probs=85.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----ccccccccccCccEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDGYYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----~~~~~~~~~~~~~~~i   90 (221)
                      ||+++|+.|||||||+++|. +... .+..|..+.            ..=.++||||--.    +..........+|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~-~~~~-~~~KTq~i~------------~~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALN-GEEI-RYKKTQAIE------------YYDNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHc-CCCC-CcCccceeE------------ecccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            79999999999999999854 3322 222222211            1113479999432    2222233356899999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-HHHHHHHhcCc-eEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ++.|+++..+.-.- .....+     ++|+|-|+||+|+....... ...++....|+ ..|++|+.+|+|++++...|
T Consensus        69 ll~dat~~~~~~pP-~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L  141 (143)
T PF10662_consen   69 LLQDATEPRSVFPP-GFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYL  141 (143)
T ss_pred             EEecCCCCCccCCc-hhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHH
Confidence            99999987543211 111111     68999999999998322222 23344455554 57999999999999988766

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04169 RF3 RF3 subfamily

Probab=99.74  E-value=6.5e-18  Score=130.01  Aligned_cols=117  Identities=20%  Similarity=0.191  Sum_probs=82.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------c---ccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------K---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~--~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      -+|+++|++|+|||||+++++...-  ..               .   .....+.+.......+.+++..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            4799999999999999999874211  00               0   01123445555556677788999999999998


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      +|.......++.+|++++|+|+++..... ...+......  .++|+++++||+|+....
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~  139 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRD  139 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCC
Confidence            87776667788999999999998753222 1122222221  378999999999987643

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.74  E-value=1.7e-17  Score=124.61  Aligned_cols=145  Identities=20%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCeEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY   65 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~   65 (221)
                      +|+++|+.++|||||+.+|+...-  .                           .......|++.+.....+...+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999764211  0                           01122456777777777777788999


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCChhh---h----ccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc---cc
Q 027593           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y----KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VK  135 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~---~~  135 (221)
                      +|||||+..+.......+..+|++++|+|+++...   |    .....+.  +......+|+++++||+|+....   ..
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~iiivvNK~Dl~~~~~~~~~  158 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL--LARTLGVKQLIVAVNKMDDVTVNWSEER  158 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH--HHHHcCCCeEEEEEEccccccccccHHH
Confidence            99999987776555556778999999999998521   1    1122221  12222347899999999997321   11


Q ss_pred             H-H---HH-HHHHhc-----CceEEEeecCCCCChH
Q 027593          136 A-K---QV-TFHRKK-----NLQYYEISAKSNYNFE  161 (221)
Q Consensus       136 ~-~---~~-~~~~~~-----~~~~~~~s~~~~~~i~  161 (221)
                      . +   .. ......     ..+++++||++|.|++
T Consensus       159 ~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         159 YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            1 1   11 122222     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.73  E-value=6.7e-17  Score=131.69  Aligned_cols=161  Identities=18%  Similarity=0.156  Sum_probs=101.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEEE--e------------------c--C----e
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFF--T------------------N--C----G   60 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~~--~------------------~--~----~   60 (221)
                      ...+.++|+++|+.++|||||+.+|. +.+....  ....|.|.......  .                  .  +    .
T Consensus         5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (411)
T PRK04000          5 KVQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL   83 (411)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence            46788999999999999999999853 3322211  11233333321100  0                  0  0    1


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH---
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---  136 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---  136 (221)
                      ...+.+|||||+..+..........+|++++|+|+++.. .......+ ..+ ......|+++|+||+|+.+.....   
T Consensus        84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~  161 (411)
T PRK04000         84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-MAL-DIIGIKNIVIVQNKIDLVSKERALENY  161 (411)
T ss_pred             ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHcCCCcEEEEEEeeccccchhHHHHH
Confidence            368999999999877655444456779999999999653 11111111 111 122235789999999986532211   


Q ss_pred             HHH-HHHHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          137 KQV-TFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 ~~~-~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +.. .+...   .+.+++++|+++|.|++++++.|...+.
T Consensus       162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            111 22222   2578999999999999999999988653

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.73  E-value=3.8e-17  Score=123.78  Aligned_cols=116  Identities=20%  Similarity=0.185  Sum_probs=85.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC--------C--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFE--------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~--------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      +|+++|+.|+|||||+++++...-.        .        ......+.+.......+...+..+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            5899999999999999998753211        0        00123455555556666667889999999999988888


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      +..+++.+|++++|+|+++..... ...+......  .++|+++++||+|+....
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~  132 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGAD  132 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCC
Confidence            888899999999999999864432 2233333332  378999999999987543

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.1e-17  Score=110.94  Aligned_cols=158  Identities=22%  Similarity=0.316  Sum_probs=118.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .++.+|.++|..|+||||++-++-.+. .....|++|....    .+.+.+..+++||..|+-..+..|+.|+.+.+++|
T Consensus        16 e~e~rililgldGaGkttIlyrlqvge-vvttkPtigfnve----~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avI   90 (182)
T KOG0072|consen   16 EREMRILILGLDGAGKTTILYRLQVGE-VVTTKPTIGFNVE----TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVI   90 (182)
T ss_pred             ccceEEEEeeccCCCeeEEEEEcccCc-ccccCCCCCcCcc----ccccccccceeeEccCcccccHHHHHHhcccceEE
Confidence            378999999999999999988743333 2344556654333    33447899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|.+|+.........+..+...  ..+..+++++||.|........+..     .......+..+.+||..|.|++.+
T Consensus        91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~  170 (182)
T KOG0072|consen   91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA  170 (182)
T ss_pred             EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence            999999987665444333333222  3466778899999998765555433     223334578999999999999999


Q ss_pred             HHHHHHHHhC
Q 027593          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      .+|+.+.+..
T Consensus       171 ~DWL~~~l~~  180 (182)
T KOG0072|consen  171 MDWLQRPLKS  180 (182)
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.72  E-value=1.3e-16  Score=129.66  Aligned_cols=154  Identities=14%  Similarity=0.059  Sum_probs=101.0

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEE
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYC   66 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (221)
                      |+ +.-...+++.++|+++|+.++|||||+++|+....              ........|+|.......+...+..+.+
T Consensus         1 ~~-~~~~~~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~l   79 (394)
T TIGR00485         1 MA-KEKFERTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAH   79 (394)
T ss_pred             Cc-hhhhcCCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEE
Confidence            45 34444578899999999999999999999763210              0011223667777766677667788999


Q ss_pred             EeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccH-----HHHH
Q 027593           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVT  140 (221)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~-----~~~~  140 (221)
                      |||||++.|..........+|++++|+|+......... ..+..+..  .+.|.+ +++||+|+.+.....     +...
T Consensus        80 iDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~  156 (394)
T TIGR00485        80 VDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (394)
T ss_pred             EECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHH
Confidence            99999988765554456678999999999875322221 12222222  256755 689999986532211     1223


Q ss_pred             HHHhcC-----ceEEEeecCCCC
Q 027593          141 FHRKKN-----LQYYEISAKSNY  158 (221)
Q Consensus       141 ~~~~~~-----~~~~~~s~~~~~  158 (221)
                      +....+     ++++++|+.++.
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       157 LLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHhcCCCccCccEEECcccccc
Confidence            333332     789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=1.8e-16  Score=120.29  Aligned_cols=154  Identities=15%  Similarity=0.160  Sum_probs=113.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEE-EEEEEeCCCccccccccccc-------cc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKFGGLRDGY-------YI   84 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~~g~~~~~~~~~~~-------~~   84 (221)
                      -..|+++|.|++|||||++++...+  +...+...+|.++...++...+. .+.+-|+||...-....+..       +.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiE  273 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIE  273 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHH
Confidence            3568999999999999999965443  46778888899998877766554 49999999977655444432       56


Q ss_pred             CccEEEEEEeCCCh---hhhccHHHHHHHHHhh---cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCC
Q 027593           85 HGQCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        85 ~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      .+..+++|+|++..   ..++.+..+..++..+   ..++|.++|+||+|+.+.+... ..++...+.- .++++||+++
T Consensus       274 R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~  352 (366)
T KOG1489|consen  274 RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSG  352 (366)
T ss_pred             hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccc
Confidence            78999999999988   6666665554444333   4689999999999996332221 1344455444 4899999999


Q ss_pred             CChHHHHHHHHH
Q 027593          158 YNFEKPFLYLAR  169 (221)
Q Consensus       158 ~~i~~~~~~l~~  169 (221)
                      +++.++...|-.
T Consensus       353 egl~~ll~~lr~  364 (366)
T KOG1489|consen  353 EGLEELLNGLRE  364 (366)
T ss_pred             cchHHHHHHHhh
Confidence            999998766643

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=5.1e-16  Score=111.42  Aligned_cols=157  Identities=14%  Similarity=0.108  Sum_probs=109.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc----------ccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~   79 (221)
                      +....-|+++|.+++|||||||.+++.+-....+.++|.|+....+.+++.   +.++|.||-          +.+....
T Consensus        21 ~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i   97 (200)
T COG0218          21 EDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLI   97 (200)
T ss_pred             CCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHH
Confidence            345678999999999999999997776766788899999999988877654   889999992          2233333


Q ss_pred             ccccc---CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhc----Cce--E
Q 027593           80 DGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--Y  149 (221)
Q Consensus        80 ~~~~~---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~----~~~--~  149 (221)
                      ..|+.   +-.++++++|+.....-.+. ...+.+...  +.|+++++||+|........... ......    ...  +
T Consensus        98 ~~YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~  174 (200)
T COG0218          98 EEYLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWV  174 (200)
T ss_pred             HHHHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceE
Confidence            44443   34677888888766443222 233333332  89999999999987644343222 122111    112  7


Q ss_pred             EEeecCCCCChHHHHHHHHHHHh
Q 027593          150 YEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       150 ~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +..|+..+.|++++...|...+.
T Consensus       175 ~~~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         175 VLFSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EEEecccccCHHHHHHHHHHHhh
Confidence            78899999999999998888764

>PRK12736 elongation factor Tu; Reviewed

Probab=99.71  E-value=3e-16  Score=127.49  Aligned_cols=162  Identities=14%  Similarity=0.057  Sum_probs=107.1

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      ....++.++|+++|+.++|||||+++|+.....              .......|+|.......+...+..+.++||||+
T Consensus         6 ~~~~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh   85 (394)
T PRK12736          6 FDRSKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGH   85 (394)
T ss_pred             hccCCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCH
Confidence            345788999999999999999999997742110              011225567777766666666778899999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc-
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK-  145 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~-  145 (221)
                      ++|.......+..+|++++|+|+.....-... ..+..+..  .+.| +++++||+|+.+.....+     ...+.... 
T Consensus        86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~-~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~  162 (394)
T PRK12736         86 ADYVKNMITGAAQMDGAILVVAATDGPMPQTR-EHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYD  162 (394)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCchhHH-HHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhC
Confidence            87765555556788999999999875322221 22222222  2677 678899999864322211     11222222 


Q ss_pred             ----CceEEEeecCCCC--------ChHHHHHHHHHHH
Q 027593          146 ----NLQYYEISAKSNY--------NFEKPFLYLARKL  171 (221)
Q Consensus       146 ----~~~~~~~s~~~~~--------~i~~~~~~l~~~l  171 (221)
                          ..+++++|+++|.        ++..+++.|.+.+
T Consensus       163 ~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        163 FPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence                3589999999983        4667666666654

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.70  E-value=2.2e-16  Score=118.59  Aligned_cols=152  Identities=14%  Similarity=0.175  Sum_probs=94.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCC------------ceeEeeeEE------------------------EEec
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT------------IGVEVHPLD------------------------FFTN   58 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~------------~~~~~~~~~------------------------~~~~   58 (221)
                      ||+++|+.++|||||+++|..+.+.+.....            .|.+.....                        ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            6899999999999999998876664311100            111110000                        0111


Q ss_pred             CeEEEEEEEeCCCcccccccccccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~  136 (221)
                      ..+..+.++||||++.+.......+  ..+|++++|+|+.....-. ...++..+...  ++|+++|+||+|+.+.....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~~--~ip~ivvvNK~D~~~~~~~~  157 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALAL--NIPVFVVVTKIDLAPANILQ  157 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEECccccCHHHHH
Confidence            2346789999999988755443333  3689999999988654322 12233333322  78999999999985432221


Q ss_pred             HHH-H---HHH--------------------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593          137 KQV-T---FHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       137 ~~~-~---~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      +.. +   ...                          ....++|.+|+.+|.|+++++..|..
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            111 1   111                          11348999999999999998876654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12735 elongation factor Tu; Reviewed

Probab=99.70  E-value=3.7e-16  Score=127.02  Aligned_cols=160  Identities=12%  Similarity=0.026  Sum_probs=105.1

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ..+++.++|+++|+.++|||||+++|+....              ........|+|.......+...+..+.++||||+.
T Consensus         7 ~~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~   86 (396)
T PRK12735          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA   86 (396)
T ss_pred             CCCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH
Confidence            4568899999999999999999999875210              00112245677776666666666789999999998


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccH-----HHHHHHHhc--
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRKK--  145 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~-----~~~~~~~~~--  145 (221)
                      .|.......+..+|++++|+|+........ ...+..+..  .+.|.+ +++||+|+.......     +...+....  
T Consensus        87 ~f~~~~~~~~~~aD~~llVvda~~g~~~qt-~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~  163 (396)
T PRK12735         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCC
Confidence            776555566778999999999987532221 122222221  267865 679999986422111     111223322  


Q ss_pred             ---CceEEEeecCCCC----------ChHHHHHHHHHH
Q 027593          146 ---NLQYYEISAKSNY----------NFEKPFLYLARK  170 (221)
Q Consensus       146 ---~~~~~~~s~~~~~----------~i~~~~~~l~~~  170 (221)
                         ..+++++|+.+|.          ++..+++.|...
T Consensus       164 ~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        164 PGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             CcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence               3689999999984          456666666654

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.70  E-value=3.6e-16  Score=132.06  Aligned_cols=153  Identities=24%  Similarity=0.287  Sum_probs=97.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEEe--cCeE-----E-----EEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~-----~-----~~~~~D~~g~~~   74 (221)
                      .+...|+++|++++|||||++++.+......    ...+.|.+........  .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            4557899999999999999999654322111    1123333322211100  0111     1     278999999999


Q ss_pred             ccccccccccCccEEEEEEeCCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---c-------------
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---K-------------  135 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~-------------  135 (221)
                      |...+...+..+|++++|+|+++   ..++..+..    +..  .+.|+++++||+|+.....   .             
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~----~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAINI----LKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHH----HHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            98887777889999999999997   344433322    111  3789999999999842100   0             


Q ss_pred             -HH--------HHHHHH---------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593          136 -AK--------QVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       136 -~~--------~~~~~~---------------~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                       ..        ......               ...++++++|+.+|.|+++++..+..
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence             00        000101               12367999999999999998887754

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.69  E-value=4e-16  Score=119.19  Aligned_cols=156  Identities=15%  Similarity=0.115  Sum_probs=111.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-c--------cccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-G--------GLRDGY   82 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-~--------~~~~~~   82 (221)
                      .-.+|.|.|.||||||||++++...  .+...+.+.+|-..+...+..+..+++++||||.-+- -        ......
T Consensus       167 ~~pTivVaG~PNVGKSSlv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL  244 (346)
T COG1084         167 DLPTIVVAGYPNVGKSSLVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILAL  244 (346)
T ss_pred             CCCeEEEecCCCCcHHHHHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHH
Confidence            4578999999999999999985543  3566778888888888888888899999999994321 1        111122


Q ss_pred             ccCccEEEEEEeCCChhh--hccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc-CceEEEeecCCCCC
Q 027593           83 YIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKSNYN  159 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~  159 (221)
                      -.-.++++|++|.+....  .+....+...+..... .|+++|+||.|..+.....+........ +.....+++..+.+
T Consensus       245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (346)
T COG1084         245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCG  323 (346)
T ss_pred             HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhh
Confidence            234578999999886544  4555566666666655 8999999999987644444333233333 34467788888888


Q ss_pred             hHHHHHHHHHH
Q 027593          160 FEKPFLYLARK  170 (221)
Q Consensus       160 i~~~~~~l~~~  170 (221)
                      ++.+...+...
T Consensus       324 ~d~~~~~v~~~  334 (346)
T COG1084         324 LDKLREEVRKT  334 (346)
T ss_pred             HHHHHHHHHHH
Confidence            88877777665

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.69  E-value=1.2e-15  Score=129.59  Aligned_cols=155  Identities=13%  Similarity=0.056  Sum_probs=99.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +-|+++|+.++|||||+++|.+..... ......|+|.......+. ..+..+.+|||||++.|.......+..+|++++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lL   80 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALL   80 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEEE
Confidence            358999999999999999966322111 112224555544332221 123568999999999887666666889999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccH----HHHHHHHhc---CceEEEeecCCCCChHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA----KQVTFHRKK---NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~----~~~~~~~~~---~~~~~~~s~~~~~~i~~~  163 (221)
                      |+|+++...-.. ...+. +.... +.| +++|+||+|+.+.....    +...+....   ..+++++|+++|.|++++
T Consensus        81 VVda~eg~~~qT-~ehl~-il~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L  157 (614)
T PRK10512         81 VVACDDGVMAQT-REHLA-ILQLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDAL  157 (614)
T ss_pred             EEECCCCCcHHH-HHHHH-HHHHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHH
Confidence            999987422111 11111 21222 455 57999999986532111    112232222   368999999999999999


Q ss_pred             HHHHHHHH
Q 027593          164 FLYLARKL  171 (221)
Q Consensus       164 ~~~l~~~l  171 (221)
                      +..|....
T Consensus       158 ~~~L~~~~  165 (614)
T PRK10512        158 REHLLQLP  165 (614)
T ss_pred             HHHHHHhh
Confidence            99998754

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.67  E-value=4.7e-16  Score=126.37  Aligned_cols=189  Identities=16%  Similarity=0.186  Sum_probs=134.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ..+..+||+++|..|+|||||+-.++...+.+...+-...  -.+...+.-..+..+++|++..+..+.....-++.+++
T Consensus         5 ~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~v   82 (625)
T KOG1707|consen    5 ETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADV   82 (625)
T ss_pred             cCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhcCE
Confidence            3567899999999999999999998888887655443321  11113334455668999998766655665667899999


Q ss_pred             EEEEEeCCChhhhccHH-HHHHHHHhhc---CCCCEEEEEeCCCCCccccc-HHH--HHHHHhc--CceEEEeecCCCCC
Q 027593           89 AIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQ--VTFHRKK--NLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~-~~~--~~~~~~~--~~~~~~~s~~~~~~  159 (221)
                      ++++|+++++.+.+.+. .|+..+++..   -..|+|+|+||+|....... .+.  ..+....  --.+++|||++..+
T Consensus        83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n  162 (625)
T KOG1707|consen   83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN  162 (625)
T ss_pred             EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence            99999999999998875 8999998876   58999999999998754333 111  1111111  12478899999999


Q ss_pred             hHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHH
Q 027593          160 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA  205 (221)
Q Consensus       160 i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~  205 (221)
                      +.++|-..-+++..      ...|......+.+.+.........++
T Consensus       163 ~~e~fYyaqKaVih------Pt~PLyda~~qelkp~~v~al~RIFk  202 (625)
T KOG1707|consen  163 VSELFYYAQKAVIH------PTSPLYDAEEQELKPRCVKALKRIFK  202 (625)
T ss_pred             hHhhhhhhhheeec------cCccccccccccccHHHHHHHHHHHh
Confidence            99999665555443      33455555556666666666655554

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.67  E-value=1.5e-15  Score=112.36  Aligned_cols=156  Identities=15%  Similarity=0.219  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCce---eEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----cc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI   84 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~~   84 (221)
                      .++|+++|.+|+|||||+|.+++...........+   ++.....+.. .....+.+||+||..........+     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            37999999999999999999776443222222222   1111111111 112468999999975433222223     56


Q ss_pred             CccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc---------cHHHH----HH----HHh--
Q 027593           85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAKQV----TF----HRK--  144 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---------~~~~~----~~----~~~--  144 (221)
                      .+|.++++.+.    .|.... .|+..+...  +.|+++|+||+|+.....         ..+..    +.    ...  
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            77888887432    233333 455555444  689999999999842111         01111    11    111  


Q ss_pred             -cCceEEEeecC--CCCChHHHHHHHHHHHhCCC
Q 027593          145 -KNLQYYEISAK--SNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       145 -~~~~~~~~s~~--~~~~i~~~~~~l~~~l~~~~  175 (221)
                       ..-++|.+|+.  .+.++..+...+...|....
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~  187 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK  187 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence             12367888887  56789998888888876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.67  E-value=9.5e-17  Score=138.80  Aligned_cols=143  Identities=19%  Similarity=0.176  Sum_probs=96.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   75 (221)
                      .--+|+|+|+.++|||||+++|+.  +....  ..            ....|++.......+..++..+.+|||||+..+
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            346999999999999999999863  21100  01            113466666666666667889999999999888


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc----eEEE
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE  151 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~----~~~~  151 (221)
                      ...+...+..+|++++|+|+.+.........|.. ...  .+.|+++++||+|+...........+....+.    ..++
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~-~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip  165 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQ-ANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP  165 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHH-HHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence            7777888999999999999998655443333332 222  27899999999999764322212222222222    3566


Q ss_pred             eecCCC
Q 027593          152 ISAKSN  157 (221)
Q Consensus       152 ~s~~~~  157 (221)
                      +|+..+
T Consensus       166 is~~~~  171 (689)
T TIGR00484       166 IGAEDN  171 (689)
T ss_pred             cccCCC
Confidence            776654

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>cd04167 Snu114p Snu114p subfamily

Probab=99.66  E-value=4.5e-16  Score=116.54  Aligned_cols=113  Identities=21%  Similarity=0.243  Sum_probs=79.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc-----------------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ   72 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~   72 (221)
                      +|+++|+.|+|||||+++|+.......                 .....|++.......+     .+..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999886443211                 0112334443333332     345689999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ..+......++..+|++++|+|++...++.. ..+......  .+.|+++++||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9887777788899999999999987765432 222222222  368999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=3.7e-16  Score=116.89  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=79.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC--CCc------------ccCCceeEeeeEE--EEec--------CeEEEEEEEeCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHPLD--FFTN--------CGKIRFYCWDTA   70 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~--~~~------------~~~~~~~~~~~~~--~~~~--------~~~~~~~~~D~~   70 (221)
                      +|+++|+.++|||||+.+|+...-  ...            .....|.+.....  ..+.        +....+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            699999999999999999775321  100            0111233333222  2222        337889999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      |+..|......+++.+|++++|+|+...........+.....   .+.|+++++||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~---~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALK---ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHH---cCCCEEEEEECCCcc
Confidence            999999888889999999999999998765554333333222   268999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PLN03126 Elongation factor Tu; Provisional

Probab=99.65  E-value=1.2e-15  Score=125.87  Aligned_cols=150  Identities=13%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCC------CCC--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE------FEK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~------~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      +...++.++|+++|+.++|||||+++|+...      ...        ......|++.+.....+...+..+.++|+||+
T Consensus        75 ~~~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh  154 (478)
T PLN03126         75 FERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGH  154 (478)
T ss_pred             hhccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCH
Confidence            3356889999999999999999999987511      111        12334567766666666666778999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHh--
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRK--  144 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~--  144 (221)
                      ..|.......+..+|++++|+|+.....-... .++.....  -++| +++++||+|+.......+     ...+...  
T Consensus       155 ~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~-e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g  231 (478)
T PLN03126        155 ADYVKNMITGAAQMDGAILVVSGADGPMPQTK-EHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYE  231 (478)
T ss_pred             HHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcC
Confidence            98876666667789999999999876432222 22222222  2677 678999999865322111     1122222  


Q ss_pred             ---cCceEEEeecCCCCC
Q 027593          145 ---KNLQYYEISAKSNYN  159 (221)
Q Consensus       145 ---~~~~~~~~s~~~~~~  159 (221)
                         ..++++++|+.++.+
T Consensus       232 ~~~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        232 FPGDDIPIISGSALLALE  249 (478)
T ss_pred             CCcCcceEEEEEcccccc
Confidence               257899999988754

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.65  E-value=1.3e-14  Score=107.30  Aligned_cols=163  Identities=12%  Similarity=-0.007  Sum_probs=99.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-----------ccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGY   82 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-----------~~~   82 (221)
                      ++|+++|.+|+|||||+|.+++...........+.|...........+..+.++||||........           ...
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            489999999999999999977654433222233455544444333356789999999965432110           112


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCcccc--------cHHHHHHHHhcCceEEE
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQV--------KAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~~~~--------~~~~~~~~~~~~~~~~~  151 (221)
                      ....+++++|+++.. .+- .....+..+....+   -.++++++|+.|......        ..........++-.++.
T Consensus        81 ~~g~~~illVi~~~~-~t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            356799999999876 221 12233444433322   368899999999754221        12223344444544444


Q ss_pred             ee-----cCCCCChHHHHHHHHHHHhC-CCCCc
Q 027593          152 IS-----AKSNYNFEKPFLYLARKLAG-DPNLH  178 (221)
Q Consensus       152 ~s-----~~~~~~i~~~~~~l~~~l~~-~~~~~  178 (221)
                      .+     +..+.++.+++..|...+.. .+..+
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~~  191 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKPY  191 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCCC
Confidence            33     45577889999999998876 34333

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>CHL00071 tufA elongation factor Tu

Probab=99.65  E-value=4.2e-15  Score=121.39  Aligned_cols=148  Identities=14%  Similarity=0.054  Sum_probs=99.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      .+++.++|+++|++++|||||+++|+.....              .......|++.......+..++.++.++||||+..
T Consensus         8 ~~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~   87 (409)
T CHL00071          8 RKKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (409)
T ss_pred             CCCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHH
Confidence            3678899999999999999999998753110              11122367777776666666677899999999887


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHH-----HHHHHHhc---
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRKK---  145 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~-----~~~~~~~~---  145 (221)
                      +.......+..+|++++|+|+.....-.. ...+..+..  .+.| +++++||+|+.+.....+     ...+....   
T Consensus        88 ~~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~  164 (409)
T CHL00071         88 YVKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFP  164 (409)
T ss_pred             HHHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            76655666788999999999986532221 112222221  2678 678999999875322211     11222222   


Q ss_pred             --CceEEEeecCCCCC
Q 027593          146 --NLQYYEISAKSNYN  159 (221)
Q Consensus       146 --~~~~~~~s~~~~~~  159 (221)
                        ..+++++|+.+|.+
T Consensus       165 ~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        165 GDDIPIVSGSALLALE  180 (409)
T ss_pred             CCcceEEEcchhhccc
Confidence              26899999998864

>cd01850 CDC_Septin CDC/Septin

Probab=99.65  E-value=5.5e-15  Score=114.36  Aligned_cols=140  Identities=17%  Similarity=0.273  Sum_probs=85.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc------
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG------   76 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~------   76 (221)
                      .++|+|+|.+|+|||||+|+++.......          ..++.+..........++..+.+.+|||||.....      
T Consensus         4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~~   83 (276)
T cd01850           4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDCW   83 (276)
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhhH
Confidence            58999999999999999999877665432          22333334444444556667899999999943221      


Q ss_pred             --------------------cccccccc--CccEEEEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           77 --------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        77 --------------------~~~~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                                          ..+...+.  .+++++++++.+.. ..... ...+..+   ....|+++|+||+|+....
T Consensus        84 ~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l---~~~v~vi~VinK~D~l~~~  159 (276)
T cd01850          84 KPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRL---SKRVNIIPVIAKADTLTPE  159 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHH---hccCCEEEEEECCCcCCHH
Confidence                                11112333  35667777776542 22221 1223333   2378999999999985422


Q ss_pred             c----cHHHHHHHHhcCceEEEeecCC
Q 027593          134 V----KAKQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus       134 ~----~~~~~~~~~~~~~~~~~~s~~~  156 (221)
                      .    .....+.....++.+|......
T Consensus       160 e~~~~k~~i~~~l~~~~i~~~~~~~~~  186 (276)
T cd01850         160 ELKEFKQRIMEDIEEHNIKIYKFPEDE  186 (276)
T ss_pred             HHHHHHHHHHHHHHHcCCceECCCCCc
Confidence            1    1123355667788888766543

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK13351 elongation factor G; Reviewed

Probab=99.64  E-value=2.6e-15  Score=130.15  Aligned_cols=118  Identities=21%  Similarity=0.244  Sum_probs=86.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC-------------CCcc---cCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKY---EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~-------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      ....+|+|+|+.|+|||||+++|+...-             ..++   ....+.+.......+.+.+..+.+|||||+.+
T Consensus         6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~d   85 (687)
T PRK13351          6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHID   85 (687)
T ss_pred             ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHH
Confidence            3467999999999999999999875221             0000   01234444444445555678999999999998


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      +...+..+++.+|++++|+|+++.........|.. +..  .+.|+++++||+|+..
T Consensus        86 f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~-~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         86 FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQ-ADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHh--cCCCEEEEEECCCCCC
Confidence            88888888999999999999998766655444433 222  2789999999999754

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.64  E-value=3.3e-15  Score=122.76  Aligned_cols=151  Identities=17%  Similarity=0.214  Sum_probs=103.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +++.++|+++|+.++|||||+.+|+...-  .                           .......|+|.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            67889999999999999999998775211  0                           011223466666666666777


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhcc------HHHHHHHHHhhcCCC-CEEEEEeCCCCCccc
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN------VPTWHRDLCRVCENI-PIVLCGNKVDVKNRQ  133 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~-p~i~v~nk~D~~~~~  133 (221)
                      +..+.++|+||+.+|.......+..+|++++|+|+++. .|+.      .......+... .+. ++++++||+|+....
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~-~gi~~iIV~vNKmD~~~~~  161 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFT-LGVKQMICCCNKMDATTPK  161 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHH-cCCCcEEEEEEcccCCchh
Confidence            88999999999999988888888999999999999873 3321      11111111111 255 578899999976211


Q ss_pred             c--------cHHHHHHHHhcC-----ceEEEeecCCCCChHH
Q 027593          134 V--------KAKQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (221)
Q Consensus       134 ~--------~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~  162 (221)
                      .        ..+...+....+     ++++++|+++|.|+.+
T Consensus       162 ~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        162 YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            1        112223344443     6799999999999853

>PRK00049 elongation factor Tu; Reviewed

Probab=99.64  E-value=8.2e-15  Score=119.12  Aligned_cols=159  Identities=13%  Similarity=0.041  Sum_probs=104.6

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCC--------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ...++.++|+++|+.++|||||+++|+.....              .......|+|.......+...+..+.++||||+.
T Consensus         7 ~~~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~   86 (396)
T PRK00049          7 ERTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA   86 (396)
T ss_pred             cCCCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH
Confidence            35688999999999999999999998752110              0112256777777666666667789999999998


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccHH-----HHHHHHh---
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAK-----QVTFHRK---  144 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~~-----~~~~~~~---  144 (221)
                      .+.......+..+|++++|+|+.....-.. ...+..+..  .+.|.+ +++||+|+.......+     ...+...   
T Consensus        87 ~f~~~~~~~~~~aD~~llVVDa~~g~~~qt-~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~  163 (396)
T PRK00049         87 DYVKNMITGAAQMDGAILVVSAADGPMPQT-REHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDF  163 (396)
T ss_pred             HHHHHHHhhhccCCEEEEEEECCCCCchHH-HHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCC
Confidence            776655666789999999999987532221 122222222  267876 6899999864222111     1122222   


Q ss_pred             --cCceEEEeecCCCC----------ChHHHHHHHHH
Q 027593          145 --KNLQYYEISAKSNY----------NFEKPFLYLAR  169 (221)
Q Consensus       145 --~~~~~~~~s~~~~~----------~i~~~~~~l~~  169 (221)
                        ...+++++|++++.          ++..+++.|..
T Consensus       164 ~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~  200 (396)
T PRK00049        164 PGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS  200 (396)
T ss_pred             CccCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence              24689999999864          34555555554

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.63  E-value=7.7e-15  Score=115.22  Aligned_cols=62  Identities=16%  Similarity=0.265  Sum_probs=44.1

Q ss_pred             CCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH-HHHHHHhCCCCCcc
Q 027593          117 NIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHF  179 (221)
Q Consensus       117 ~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~-~l~~~l~~~~~~~~  179 (221)
                      .+|+++++||.|+.......+... .......++.+||+.+.++.++.+ .+...+...+.+..
T Consensus       214 ~KPvI~VlNK~Dl~~~~~~~~~l~-~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~  276 (318)
T cd01899         214 SKPMVIAANKADIPDAENNISKLR-LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEI  276 (318)
T ss_pred             CCcEEEEEEHHHccChHHHHHHHH-hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCcee
Confidence            469999999999753322122111 122356799999999999999997 69998877776554

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=5.5e-15  Score=119.42  Aligned_cols=168  Identities=17%  Similarity=0.196  Sum_probs=126.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCC-------CC------cccCCceeEeeeEEEEecCeE---EEEEEEeCCCccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEF-------EK------KYEPTIGVEVHPLDFFTNCGK---IRFYCWDTAGQEKFG   76 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~-------~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~D~~g~~~~~   76 (221)
                      .-+++|+-+-.-|||||..+++.-.-       ..      ......|+|....+.++.+.+   ..++++||||+.+|.
T Consensus        60 iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs  139 (650)
T KOG0462|consen   60 IRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFS  139 (650)
T ss_pred             ccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccccc
Confidence            45789999999999999999764111       11      123467888888888776555   999999999999999


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HHHHHHhcCceEEEee
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEIS  153 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~~~~~~~~~~~~~~s  153 (221)
                      ......+..++++++|+|++...--+.+..+...+.   .+..+|.|+||.|++......-   ..+.......+.+.+|
T Consensus       140 ~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe---~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vS  216 (650)
T KOG0462|consen  140 GEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE---AGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIYVS  216 (650)
T ss_pred             ceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH---cCCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEEEE
Confidence            999999999999999999998755444444333333   3889999999999987544332   2344455566899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCccccCCCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPAL  185 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~  185 (221)
                      |++|-++.+++.+|++.+.  |.....|.|..
T Consensus       217 AK~G~~v~~lL~AII~rVP--pP~~~~d~plr  246 (650)
T KOG0462|consen  217 AKTGLNVEELLEAIIRRVP--PPKGIRDAPLR  246 (650)
T ss_pred             eccCccHHHHHHHHHhhCC--CCCCCCCcchH
Confidence            9999999999999999875  33344555543

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=8.2e-15  Score=117.22  Aligned_cols=161  Identities=16%  Similarity=0.156  Sum_probs=114.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccc--------ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY   82 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~--------~~~   82 (221)
                      ..+.|+++|+||+|||||+|. +.+.....+.+..|+|++.....++-+++.+.+.||+|..+ .....        ...
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            459999999999999999998 66777788899999999999999998999999999999765 11111        223


Q ss_pred             ccCccEEEEEEeCC--ChhhhccHHHHHHHHHhhc-------CCCCEEEEEeCCCCCcccccHHH--H---HHHHhcCc-
Q 027593           83 YIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQVKAKQ--V---TFHRKKNL-  147 (221)
Q Consensus        83 ~~~~~~~i~v~d~~--~~~s~~~~~~~~~~~~~~~-------~~~p~i~v~nk~D~~~~~~~~~~--~---~~~~~~~~-  147 (221)
                      +..+|.+++|+|+.  +..+-..+...++......       ...|++++.||.|+.........  .   .......+ 
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            67899999999994  3333333333333332221       24789999999998654211111  1   11111123 


Q ss_pred             eEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          148 QYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       148 ~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ...++|+++++|++++...|...+..
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHH
Confidence            34559999999999999998887654

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.62  E-value=4.1e-15  Score=123.16  Aligned_cols=152  Identities=17%  Similarity=0.190  Sum_probs=98.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCC--C-----------------------------cccCCceeEeeeEEEEec
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K-----------------------------KYEPTIGVEVHPLDFFTN   58 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~   58 (221)
                      .++.++|+++|+.++|||||+++++...-.  .                             ......|+|.......+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            467799999999999999999998753210  0                             001123444555445555


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK  137 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~  137 (221)
                      ..+..+.++||||+..|.......+..+|++++|+|+.....-.....+  .+.......|+++++||+|+..... ..+
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence            5677899999999887755444457899999999999865322221111  1112222457899999999864211 111


Q ss_pred             -HH----HHHHh----cCceEEEeecCCCCChHHH
Q 027593          138 -QV----TFHRK----KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       138 -~~----~~~~~----~~~~~~~~s~~~~~~i~~~  163 (221)
                       ..    .+...    ...+++++|+++|.|+.++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence             11    11222    2478999999999999764

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.61  E-value=4.3e-15  Score=124.09  Aligned_cols=119  Identities=19%  Similarity=0.213  Sum_probs=84.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CCCC--C----------------cccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFE--K----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      +..+|+|+|+.|+|||||+++|+.  +...  .                ......|.++......+.+++..+.+|||||
T Consensus         9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG   88 (526)
T PRK00741          9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPG   88 (526)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCC
Confidence            456999999999999999999863  1110  0                0111235555555566667788999999999


Q ss_pred             cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      +..|......+++.+|++++|+|+++..... ...+......  .+.|+++++||+|+....
T Consensus        89 ~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~  147 (526)
T PRK00741         89 HEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGRE  147 (526)
T ss_pred             chhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccC
Confidence            9988877777889999999999998753221 1222222211  389999999999987644

>COG2262 HflX GTPases [General function prediction only]

Probab=99.61  E-value=2.8e-14  Score=112.33  Aligned_cols=174  Identities=16%  Similarity=0.137  Sum_probs=116.6

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccc--cccccccc
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK--FGGLRDGY   82 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~--~~~~~~~~   82 (221)
                      ..|..-.-..|+++|-.++|||||+|++....  .........|.++.+..+... +..+.+-||-|...  ...+...|
T Consensus       185 ~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~--~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AF  262 (411)
T COG2262         185 KKRSRSGIPLVALVGYTNAGKSTLFNALTGAD--VYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAF  262 (411)
T ss_pred             hhhcccCCCeEEEEeeccccHHHHHHHHhccC--eeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHH
Confidence            34555567899999999999999999966332  222344455555555444322 46788889999432  22222222


Q ss_pred             ------ccCccEEEEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecC
Q 027593           83 ------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAK  155 (221)
Q Consensus        83 ------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~  155 (221)
                            ...+|.++.|+|++++.....+......+... ...+|+++|.||.|.......   ........-..+.+||+
T Consensus       263 ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA~  339 (411)
T COG2262         263 KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISAK  339 (411)
T ss_pred             HHHHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEec
Confidence                  45889999999999996666665555555554 357999999999997644331   11111111158999999


Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCC
Q 027593          156 SNYNFEKPFLYLARKLAGDPNLHFVESPA  184 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~~~~~~~~~~ep~  184 (221)
                      +|.|++.++..|...+........+.-|.
T Consensus       340 ~~~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         340 TGEGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             cCcCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            99999999999999887655444444444

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.61  E-value=1.5e-14  Score=118.89  Aligned_cols=150  Identities=20%  Similarity=0.218  Sum_probs=100.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CcccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +++.++|+++|+.++|||||+.+++.  |...                           .......|.+.+.....+...
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            57889999999999999999999875  2111                           011224466666666667777


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh----ccHHHHHHHHHhhcCCCC-EEEEEeCCCCCc-
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY----KNVPTWHRDLCRVCENIP-IVLCGNKVDVKN-  131 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~----~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~-  131 (221)
                      +..+.++||||+.+|.......+..+|++++|+|+....   .|    ...+.|.  +... -+.| +++++||+|... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~--~~~~-~gi~~iiv~vNKmD~~~~  160 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHAL--LAFT-LGVKQMIVCINKMDDKTV  160 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHH--HHHH-cCCCeEEEEEEccccccc
Confidence            889999999999988777777788999999999998653   11    1111121  1111 1555 678999999532 


Q ss_pred             --ccccH-----HHHHHHHhc-----CceEEEeecCCCCChHH
Q 027593          132 --RQVKA-----KQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       132 --~~~~~-----~~~~~~~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                        .+...     +........     .++++++|+.+|.|+.+
T Consensus       161 ~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        161 NYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence              11111     111222222     46899999999999853

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.61  E-value=5e-15  Score=100.27  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---------cccccccC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH   85 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~~~~~   85 (221)
                      +|+|+|.+|+|||||+|+++... ........+.+.......+...+..+.++||||......         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            69999999999999999977533 333344445555543222222445567999999643211         12223478


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeC
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK  126 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk  126 (221)
                      +|++++|+|+.+... ......+..+.   ...|+++|+||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            899999999877321 22233334442   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.61  E-value=1e-14  Score=118.88  Aligned_cols=147  Identities=17%  Similarity=0.219  Sum_probs=96.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--CC-----------------------------cccCCceeEeeeEEEEecCeEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEF--EK-----------------------------KYEPTIGVEVHPLDFFTNCGKI   62 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~--~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (221)
                      ++|+++|+.++|||||+.+++...-  ..                             ......|+|.+.....+...+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            5899999999999999999763211  00                             0112334555555556666677


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH----
Q 027593           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK----  137 (221)
Q Consensus        63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~----  137 (221)
                      ++.++||||++.|.......+..+|++++|+|+.....-.....+.  +.......++++++||+|+..... ..+    
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence            9999999999887655556678999999999998664322222221  122223456889999999864221 111    


Q ss_pred             H-HHHHHhc---CceEEEeecCCCCChHH
Q 027593          138 Q-VTFHRKK---NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       138 ~-~~~~~~~---~~~~~~~s~~~~~~i~~  162 (221)
                      . ..+....   ..+++++|+++|.|+.+
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            1 1122222   35799999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN03127 Elongation factor Tu; Provisional

Probab=99.60  E-value=2.9e-14  Score=117.16  Aligned_cols=160  Identities=15%  Similarity=0.076  Sum_probs=101.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcC-----CCC---------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      ..++.++|+++|+.++|||||+++|...     ...         .......|+|.+.....+...+.++.++||||+..
T Consensus        57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~  136 (447)
T PLN03127         57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD  136 (447)
T ss_pred             cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc
Confidence            4678899999999999999999996521     110         01223467777777777777778899999999987


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcccccHHHH-----HHHHh----
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAKQV-----TFHRK----  144 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~~~~~-----~~~~~----  144 (221)
                      |-.........+|++++|+|+.....-.. ...+..+..  -+.| +++++||+|+.+.....+..     ++...    
T Consensus       137 f~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~  213 (447)
T PLN03127        137 YVKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFP  213 (447)
T ss_pred             hHHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            65544445567999999999886532221 122222222  2678 47889999986422211111     11111    


Q ss_pred             -cCceEEEeecC---CCCC-------hHHHHHHHHHHH
Q 027593          145 -KNLQYYEISAK---SNYN-------FEKPFLYLARKL  171 (221)
Q Consensus       145 -~~~~~~~~s~~---~~~~-------i~~~~~~l~~~l  171 (221)
                       ..++++++|+.   .+.+       +..+++.|...+
T Consensus       214 ~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        214 GDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             CCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence             13678888876   3444       456666665543

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.60  E-value=1.2e-14  Score=111.61  Aligned_cols=160  Identities=16%  Similarity=0.123  Sum_probs=109.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccc----ccc---ccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR----DGY---YIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~----~~~---~~~   85 (221)
                      .-|+++|.|++|||||++++...  .++....+.+|..+.-..+. .....|.+-|+||..+-.+.-    ..|   +..
T Consensus       160 ADVGLVG~PNaGKSTlls~vS~A--kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIER  237 (369)
T COG0536         160 ADVGLVGLPNAGKSTLLSAVSAA--KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIER  237 (369)
T ss_pred             cccccccCCCCcHHHHHHHHhhc--CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHh
Confidence            35789999999999999985543  35566677777777655554 455679999999976543322    222   567


Q ss_pred             ccEEEEEEeCCChhh---hccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHH-H-HHHHHhcCce-EEEeecCC
Q 027593           86 GQCAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK-Q-VTFHRKKNLQ-YYEISAKS  156 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~-~-~~~~~~~~~~-~~~~s~~~  156 (221)
                      +..++.|+|++..+.   .++......++..+.   .++|.++|+||+|+.......+ . ..+....+.. .+++|+.+
T Consensus       238 t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t  317 (369)
T COG0536         238 TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALT  317 (369)
T ss_pred             hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhc
Confidence            889999999986553   344444555555543   5899999999999654322222 2 2333333433 22299999


Q ss_pred             CCChHHHHHHHHHHHhCCC
Q 027593          157 NYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       157 ~~~i~~~~~~l~~~l~~~~  175 (221)
                      +.|++.+...+.+.+...+
T Consensus       318 ~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         318 REGLDELLRALAELLEETK  336 (369)
T ss_pred             ccCHHHHHHHHHHHHHHhh
Confidence            9999999999999776654

>PRK00007 elongation factor G; Reviewed

Probab=99.60  E-value=4.6e-15  Score=128.37  Aligned_cols=143  Identities=18%  Similarity=0.164  Sum_probs=96.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CCCCC--cc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   75 (221)
                      ...+|+|+|+.++|||||+++|+.  |....  .+            ....|++.+.....+...+..+.++||||+..+
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            356999999999999999999873  22111  01            124566776666666667789999999998877


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC----ceEEE
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN----LQYYE  151 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~----~~~~~  151 (221)
                      .......+..+|++++|+|+...........|.... .  .++|.++++||+|+.......-...+....+    ...++
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~-~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip  165 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQAD-K--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP  165 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHH-H--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence            666666788899999999988765444433333322 2  2789999999999876443222222222222    24567


Q ss_pred             eecCCC
Q 027593          152 ISAKSN  157 (221)
Q Consensus       152 ~s~~~~  157 (221)
                      +|+..+
T Consensus       166 isa~~~  171 (693)
T PRK00007        166 IGAEDD  171 (693)
T ss_pred             CccCCc
Confidence            777665

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.59  E-value=1.1e-13  Score=111.85  Aligned_cols=164  Identities=18%  Similarity=0.242  Sum_probs=101.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-----------------------c-CeEEEEEEEeC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----------------------N-CGKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~~~~~D~   69 (221)
                      ++|+++|.++||||||+|++......  ....+++|..+....+                       + .....+++||+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            68999999999999999997765442  2233444433333211                       1 12367899999


Q ss_pred             CCccc----cccccccc---ccCccEEEEEEeCCChh----------------hhc----cHHHH---------------
Q 027593           70 AGQEK----FGGLRDGY---YIHGQCAIIMFDVTARL----------------TYK----NVPTW---------------  107 (221)
Q Consensus        70 ~g~~~----~~~~~~~~---~~~~~~~i~v~d~~~~~----------------s~~----~~~~~---------------  107 (221)
                      ||...    .......+   ++++|++++|+|+....                -++    ++..|               
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~  159 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK  159 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            99542    33333344   78999999999996210                000    00000               


Q ss_pred             --------------------------HHHHHh----------------------hcCCCCEEEEEeCCCCCcccccHHHH
Q 027593          108 --------------------------HRDLCR----------------------VCENIPIVLCGNKVDVKNRQVKAKQV  139 (221)
Q Consensus       108 --------------------------~~~~~~----------------------~~~~~p~i~v~nk~D~~~~~~~~~~~  139 (221)
                                                ...+..                      ....+|+++|+||.|.........  
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~l~--  237 (396)
T PRK09602        160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEENIE--  237 (396)
T ss_pred             HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHHHH--
Confidence                                      000000                      002479999999999753221111  


Q ss_pred             HHHHhcCceEEEeecCCCCChHH-HHHHHHHHHhCCCCCcccc
Q 027593          140 TFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       140 ~~~~~~~~~~~~~s~~~~~~i~~-~~~~l~~~l~~~~~~~~~~  181 (221)
                      .+.......++.+||+.+.++.. +...+.+.+...|.++..+
T Consensus       238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d  280 (396)
T PRK09602        238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG  280 (396)
T ss_pred             HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence            11111355789999999999999 8888888888877666433

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.58  E-value=7.2e-15  Score=105.46  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe-cCeEEEEEEEeCCCccccccccccc---ccCccE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQC   88 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~~~~~~~~~---~~~~~~   88 (221)
                      .-.|+++|+.|||||+|+.+|..+...+.+.....    .....+ ...+..+.++|+||+.+.+......   ...+.+
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~   78 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG   78 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence            35799999999999999999988855443322211    111111 1234578999999999877644443   778999


Q ss_pred             EEEEEeCCC-hhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc
Q 027593           89 AIIMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN  131 (221)
Q Consensus        89 ~i~v~d~~~-~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~  131 (221)
                      +|||+|++. .....+...++..+....    ...|+++++||.|+..
T Consensus        79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            999999874 344455555555443332    4789999999999865

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.57  E-value=3.2e-14  Score=106.46  Aligned_cols=170  Identities=12%  Similarity=0.170  Sum_probs=112.9

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-------ccccc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLR   79 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-------~~~~~   79 (221)
                      +...++.++|+++|..|+|||||||+++.+...+-..-..+++.... ....+....+.+||+||...       ++...
T Consensus        33 ~l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~-~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~  111 (296)
T COG3596          33 QLTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTR-LRLSYDGENLVLWDTPGLGDGKDKDAEHRQLY  111 (296)
T ss_pred             hhcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhh-HHhhccccceEEecCCCcccchhhhHHHHHHH
Confidence            34577889999999999999999999775544332111112111111 11122347889999999665       45556


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc---------cc--HH-----HHHHHH
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VK--AK-----QVTFHR  143 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~---------~~--~~-----~~~~~~  143 (221)
                      ..++...|.++++.++.++.--.+...|.+.+.... +.++++++|.+|.....         ..  .+     ......
T Consensus       112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~-~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~  190 (296)
T COG3596         112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGL-DKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALG  190 (296)
T ss_pred             HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhcc-CceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHH
Confidence            677889999999999999876666666666554432 48999999999974321         11  11     111111


Q ss_pred             ---hcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCc
Q 027593          144 ---KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       144 ---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~  178 (221)
                         ..-.+.+..+...+-|++.+...++.++..+.+..
T Consensus       191 ~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~  228 (296)
T COG3596         191 RLFQEVKPVVAVSGRLPWGLKELVRALITALPVEARSP  228 (296)
T ss_pred             HHHhhcCCeEEeccccCccHHHHHHHHHHhCcccccch
Confidence               11357777888889999999999999887665543

>TIGR00503 prfC peptide chain release factor 3

Probab=99.57  E-value=2.4e-14  Score=119.71  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=84.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeCC
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~   70 (221)
                      .+..+|+|+|++++|||||+++++. +....                   ......|.++......+.+++..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999763 11111                   011234556666666777788999999999


Q ss_pred             CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~  132 (221)
                      |+..+.......+..+|++++|+|+++... .....+......  .+.|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence            998887766777889999999999987421 111222222221  37899999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PRK12739 elongation factor G; Reviewed

Probab=99.56  E-value=4.9e-14  Score=122.08  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=84.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCC--Ccc------------cCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFE--KKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~--~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      .+..+|+|+|+.++|||||+++|+..  ...  ..+            ....|++......++..++..+.++||||+..
T Consensus         6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~   85 (691)
T PRK12739          6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD   85 (691)
T ss_pred             cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence            34578999999999999999998642  110  001            12456666666666666778999999999988


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      +...+...+..+|++++|+|+...........|.. ...  .++|.++++||+|+..
T Consensus        86 f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~-~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         86 FTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQ-ADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCCCC
Confidence            77777778899999999999987643332222222 222  3789999999999864

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.56  E-value=3.3e-14  Score=122.10  Aligned_cols=151  Identities=20%  Similarity=0.179  Sum_probs=96.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-------------------------------ccCCceeEeeeEEEEec
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-------------------------------YEPTIGVEVHPLDFFTN   58 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~   58 (221)
                      ..+.++|+++|++++|||||+++++...-.-.                               .....|+|.......+.
T Consensus        21 ~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         21 RKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            45678999999999999999999775221000                               00113444455445555


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHH
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK  137 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~  137 (221)
                      ..+..+.++||||++.+.......+..+|++++|+|+.....-.....+.  +.......++++++||+|+.+ .....+
T Consensus       101 ~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~--~~~~~~~~~iivvvNK~D~~~~~~~~~~  178 (632)
T PRK05506        101 TPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSF--IASLLGIRHVVLAVNKMDLVDYDQEVFD  178 (632)
T ss_pred             cCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHH--HHHHhCCCeEEEEEEecccccchhHHHH
Confidence            56678899999998877554455578899999999997653322221111  111123467889999999864 111111


Q ss_pred             -----HHHHHHhcC---ceEEEeecCCCCChHH
Q 027593          138 -----QVTFHRKKN---LQYYEISAKSNYNFEK  162 (221)
Q Consensus       138 -----~~~~~~~~~---~~~~~~s~~~~~~i~~  162 (221)
                           ...+....+   .+++++|+++|.|+.+
T Consensus       179 ~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        179 EIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence                 112223333   4689999999999874

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.56  E-value=1.3e-13  Score=105.29  Aligned_cols=153  Identities=16%  Similarity=0.084  Sum_probs=106.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-------ccccccccC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~   85 (221)
                      ..+|+++|.|.+|||||++++. +.. ........+|..+......+.+..+++.|+||.-...       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LT-nt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLT-NTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHh-CCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            4789999999999999999955 333 3345566777777777888889999999999955432       223456899


Q ss_pred             ccEEEEEEeCCChhhh-ccHHHHHHH--------------------------------------------HHhhc-----
Q 027593           86 GQCAIIMFDVTARLTY-KNVPTWHRD--------------------------------------------LCRVC-----  115 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~~~~-----  115 (221)
                      +|++++|+|+...... +-+...++.                                            +..++     
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            9999999999865542 112111111                                            10000     


Q ss_pred             -----------------CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          116 -----------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       116 -----------------~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                                       .-+|.+.|.||.|+....   +...+.+..  ..+.+|+..+-|++++...|.+.+-
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~  289 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARKP--NSVPISAKKGINLDELKERIWDVLG  289 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence                             013889999999987522   111222222  7889999999999999999999874

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.1e-14  Score=99.04  Aligned_cols=153  Identities=19%  Similarity=0.303  Sum_probs=110.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.-|++++|-.++|||||++. +....-....||...|.....+    ++..++.+|.+|+...+..|..|+..++++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHM-LKdDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHM-LKDDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHH-HccccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            456899999999999999997 4433333444444333333333    67899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH------HHHHhc-----------CceEEEe
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKK-----------NLQYYEI  152 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~~-----------~~~~~~~  152 (221)
                      .+|+-+.+.|.+.+.-.+.+...  ....|+++.+||.|........+..      ..+...           .+..|.|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999999998877666655443  3689999999999997644222111      111111           1346778


Q ss_pred             ecCCCCChHHHHHHHHH
Q 027593          153 SAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~  169 (221)
                      |...+.+-.+.|.|+..
T Consensus       174 si~~~~gy~e~fkwl~q  190 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQ  190 (193)
T ss_pred             EEEccCccceeeeehhh
Confidence            88888877776666654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.8e-13  Score=109.99  Aligned_cols=152  Identities=16%  Similarity=0.197  Sum_probs=106.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC---eEEEEEEEeCCCcccccccccccccCccE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      +.+=|+++|+-..|||||+..+-.......  ..-|.|++.--+.+..   ....+.++||||++.|..++..-..-+|+
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            446799999999999999998655444332  2334555554444432   34689999999999999888877888999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHH--------HHhcCceEEEeecCCCCC
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTF--------HRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~  159 (221)
                      +++|+++++.--.+.+.    .+... ..+.|+++++||+|..+.+......++        .+.....++++||++|.|
T Consensus        82 aILVVa~dDGv~pQTiE----AI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          82 AILVVAADDGVMPQTIE----AINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEEccCCcchhHHH----HHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            99999999873333222    22211 138999999999999864433322211        122236799999999999


Q ss_pred             hHHHHHHHHH
Q 027593          160 FEKPFLYLAR  169 (221)
Q Consensus       160 i~~~~~~l~~  169 (221)
                      +.+++..+.-
T Consensus       158 i~eLL~~ill  167 (509)
T COG0532         158 IDELLELILL  167 (509)
T ss_pred             HHHHHHHHHH
Confidence            9998887765

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=1.4e-13  Score=108.44  Aligned_cols=154  Identities=21%  Similarity=0.261  Sum_probs=106.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcC--CCC---------------------------CcccCCceeEeeeEEEEecC
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFE---------------------------KKYEPTIGVEVHPLDFFTNC   59 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   59 (221)
                      ...+.++++++|+..+|||||+-+|+..  ...                           -......|.|.......+.-
T Consensus         3 ~~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet   82 (428)
T COG5256           3 SEKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET   82 (428)
T ss_pred             CCCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec
Confidence            3678999999999999999999997751  111                           11223456777777767766


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-cc
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQ  133 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~  133 (221)
                      ....++++|+||+..|-...-.-..++|+.++|+|+++.+   +|  ....+....+.....-..+|+++||+|+.. ++
T Consensus        83 ~k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde  162 (428)
T COG5256          83 DKYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDE  162 (428)
T ss_pred             CCceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCH
Confidence            7788999999998877766666688999999999999873   22  222222223333334566789999999974 33


Q ss_pred             ccHHHH-----HHHHhc-----CceEEEeecCCCCChHH
Q 027593          134 VKAKQV-----TFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       134 ~~~~~~-----~~~~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                      .+.++.     .+.+..     ..+|+++|+..|.|+.+
T Consensus       163 ~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         163 ERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            332222     223333     36799999999999865

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.53  E-value=1.4e-13  Score=113.00  Aligned_cols=162  Identities=15%  Similarity=0.140  Sum_probs=101.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEE-----------------EecC-----------
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDF-----------------FTNC-----------   59 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~-----------------~~~~-----------   59 (221)
                      ..++.++|+++|+-..|||||+++|..-.... ......|+|...-..                 ....           
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGC  109 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccc
Confidence            34678999999999999999999966422211 011112222111000                 0000           


Q ss_pred             -----eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           60 -----GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        60 -----~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                           -...+.++|+||++.|-......+..+|++++|+|+.... .......+  .+.......++++++||+|+.+..
T Consensus       110 ~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl--~i~~~lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        110 GHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHL--AAVEIMKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             cccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHH--HHHHHcCCCcEEEEEecccccCHH
Confidence                 0247899999999888666666677899999999999742 21111111  122222345789999999987532


Q ss_pred             ccHHHH----HHHH---hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          134 VKAKQV----TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       134 ~~~~~~----~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ...+..    .+..   ....+++++|+++|.|++.+++.|...+.
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            222211    1111   13678999999999999999998887543

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.52  E-value=2.4e-13  Score=108.55  Aligned_cols=156  Identities=16%  Similarity=0.156  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC--C-----------CcccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEF--E-----------KKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~--~-----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~~~   75 (221)
                      -+.+++-+-.-|||||..+++...-  .           -......|+|.....+..     ++.++.++++||||+..|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            4578899999999999999775221  0           122345677877776654     356789999999999999


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEe
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (221)
                      .......+..|.++++++|++..---+.+.+....+.   .+.-++.|+||.|++......-..+...-.++   ..+.+
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle---~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH---cCcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence            9988889999999999999998754444444333333   37899999999999876655444444444444   57889


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027593          153 SAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ||++|.|+++++..|+..+.
T Consensus       167 SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             ecccCCCHHHHHHHHHhhCC
Confidence            99999999999999999764

>PRK12740 elongation factor G; Reviewed

Probab=99.47  E-value=5.3e-13  Score=115.65  Aligned_cols=110  Identities=19%  Similarity=0.241  Sum_probs=77.2

Q ss_pred             EcCCCCcHHHHHHHHhcCCCC--C--c------------ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc
Q 027593           19 VGDGGTGKTTFVKRHLTGEFE--K--K------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY   82 (221)
Q Consensus        19 ~G~~g~GKStli~~~~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~   82 (221)
                      +|+.|+|||||+++|+...-.  .  .            .....|.+.......+...+..+.+|||||+..+...+..+
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999997542110  0  0            01124455555555555567899999999998777777778


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      +..+|++++|+|++..........|.. ...  .+.|+++++||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~~~-~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVWRQ-AEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHHHH-HHH--cCCCEEEEEECCCCCC
Confidence            899999999999988755444333322 222  3789999999999753

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.46  E-value=2.7e-13  Score=101.83  Aligned_cols=61  Identities=25%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             hcCceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ......-.+..++|...+++|  |+|+|..+|+++++|||..+     +|...+..+.+.+++++.+.
T Consensus       129 m~~~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~~i~~lL~~l~~eg  189 (254)
T COG1121         129 MEDLRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQKEIYDLLKELRQEG  189 (254)
T ss_pred             chhhhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            334445557778888878766  99999999999999999999     99999999999999998873

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.45  E-value=2.5e-13  Score=118.02  Aligned_cols=118  Identities=22%  Similarity=0.159  Sum_probs=81.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-----------Cccc---CCceeEeeeE----EEEecCeEEEEEEEeCCCc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-----------KKYE---PTIGVEVHPL----DFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-----------~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~D~~g~   72 (221)
                      .+..+|+++|+.++|||||+++|+...-.           -.+.   ...+.|....    ...+.+.+..+.+|||||+
T Consensus        17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~   96 (720)
T TIGR00490        17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH   96 (720)
T ss_pred             ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence            34579999999999999999998752100           0111   1123333222    2235677899999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      ..+.......+..+|++++|+|+...........|.....   .+.|.++++||+|...
T Consensus        97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALK---ENVKPVLFINKVDRLI  152 (720)
T ss_pred             cccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHH---cCCCEEEEEEChhccc
Confidence            9888777788999999999999987644333333332221   2678899999999854

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>PRK09866 hypothetical protein; Provisional

Probab=99.45  E-value=6.5e-12  Score=104.79  Aligned_cols=107  Identities=18%  Similarity=0.212  Sum_probs=68.7

Q ss_pred             EEEEEEeCCCccccc-c----cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-c
Q 027593           62 IRFYCWDTAGQEKFG-G----LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K  135 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~-~----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~  135 (221)
                      ..+.++||||..... .    .....+..+|++++|+|+....+..+. .....+.......|+++|+||+|..++.. .
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De-eIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE-EVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH-HHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            457899999976432 1    233458899999999999875444332 23333433322359999999999864222 1


Q ss_pred             HH-HHHHHH----hc---CceEEEeecCCCCChHHHHHHHHH
Q 027593          136 AK-QVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       136 ~~-~~~~~~----~~---~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      .+ ......    ..   ...+|++||+.|.|++.++..|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            11 112211    11   236899999999999997776665

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.44  E-value=3.4e-13  Score=100.71  Aligned_cols=164  Identities=17%  Similarity=0.261  Sum_probs=91.7

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE------E--E------------------------
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL------D--F------------------------   55 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~------~--~------------------------   55 (221)
                      ....+...|+++|+.||||||++.++.. +......+..-+..++.      .  +                        
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~-hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~   92 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNS-HLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV   92 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHH-HHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence            3455678999999999999999999543 33222221111111110      0  0                        


Q ss_pred             --------Ee---------cCeEEEEEEEeCCCcccc------cccccccccCc--cEEEEEEeCC---ChhhhccHHHH
Q 027593           56 --------FT---------NCGKIRFYCWDTAGQEKF------GGLRDGYYIHG--QCAIIMFDVT---ARLTYKNVPTW  107 (221)
Q Consensus        56 --------~~---------~~~~~~~~~~D~~g~~~~------~~~~~~~~~~~--~~~i~v~d~~---~~~s~~~~~~~  107 (221)
                              .+         ......+.++|||||.+.      .......+...  -+++++.|..   ++..|..-..+
T Consensus        93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY  172 (366)
T KOG1532|consen   93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY  172 (366)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence                    00         123355889999998752      11112223333  3444555533   22233222222


Q ss_pred             HHHHHhhcCCCCEEEEEeCCCCCcccccHHHH------HHHHh----------------------cCceEEEeecCCCCC
Q 027593          108 HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV------TFHRK----------------------KNLQYYEISAKSNYN  159 (221)
Q Consensus       108 ~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~------~~~~~----------------------~~~~~~~~s~~~~~~  159 (221)
                      .-.+.. ....|+|++.||+|+.+.....++.      +.+..                      .++..+-+|+.+|.|
T Consensus       173 AcSily-ktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G  251 (366)
T KOG1532|consen  173 ACSILY-KTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEG  251 (366)
T ss_pred             HHHHHH-hccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCc
Confidence            211111 1379999999999998755443221      11111                      135578899999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      .+++|..+...+-.
T Consensus       252 ~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  252 FDDFFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887654

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.43  E-value=3e-12  Score=103.93  Aligned_cols=151  Identities=17%  Similarity=0.141  Sum_probs=104.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +..=|-|+|+-.-|||||+..|-......  ...-|+|++.-  .++.. .+-.++|.||||+..|...+..-..-.|++
T Consensus       152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA--~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDIv  228 (683)
T KOG1145|consen  152 RPPVVTIMGHVDHGKTTLLDALRKSSVAA--GEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDIV  228 (683)
T ss_pred             CCCeEEEeecccCChhhHHHHHhhCceeh--hhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccEE
Confidence            45678899999999999999855433322  22334555443  34444 347899999999999988888778888999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcccccHHHHHH------HHhc--CceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTF------HRKK--NLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~~~~~~~------~~~~--~~~~~~~s~~~~~~i  160 (221)
                      ++|+.+.|.--.+    ..+.+... ..+.|+++++||+|.+......-..++      ...+  .+..+++|+++|.|+
T Consensus       229 VLVVAadDGVmpQ----T~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl  304 (683)
T KOG1145|consen  229 VLVVAADDGVMPQ----TLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENL  304 (683)
T ss_pred             EEEEEccCCccHh----HHHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCCh
Confidence            9999999863222    22233222 248999999999998764332211121      2222  367899999999999


Q ss_pred             HHHHHHHHH
Q 027593          161 EKPFLYLAR  169 (221)
Q Consensus       161 ~~~~~~l~~  169 (221)
                      +.+-+++.-
T Consensus       305 ~~L~eaill  313 (683)
T KOG1145|consen  305 DLLEEAILL  313 (683)
T ss_pred             HHHHHHHHH
Confidence            887766654

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.42  E-value=2.3e-12  Score=98.16  Aligned_cols=119  Identities=8%  Similarity=0.023  Sum_probs=71.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---c-------c
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L-------R   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~-------~   79 (221)
                      ....++|+|+|.+|+|||||+|++++... .......+.+...........+..+.+|||||......   .       .
T Consensus        28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~-~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I  106 (249)
T cd01853          28 LDFSLTILVLGKTGVGKSSTINSIFGERK-AATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSI  106 (249)
T ss_pred             ccCCeEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHH
Confidence            34579999999999999999999665433 22222333344443333333457899999999664421   1       1


Q ss_pred             ccccc--CccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593           80 DGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (221)
Q Consensus        80 ~~~~~--~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~  130 (221)
                      ..++.  ..+++++|..++... +... ...+..+....+   -.++++|.||+|..
T Consensus       107 ~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         107 KRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            11222  467777776655432 2222 233444443332   25799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.42  E-value=5.3e-13  Score=87.89  Aligned_cols=136  Identities=21%  Similarity=0.128  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc----cccccCccEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~----~~~~~~~~~~i   90 (221)
                      |++++|..|+|||||++. +.|...- +..+..+++...           -.+||||.-.....+    ......++.++
T Consensus         3 ri~~vG~~gcGKTtL~q~-L~G~~~l-ykKTQAve~~d~-----------~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQS-LYGNDTL-YKKTQAVEFNDK-----------GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHH-hhcchhh-hcccceeeccCc-----------cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            789999999999999999 4443311 122222222111           246899944322222    22356789999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC-ceEEEeecCCCCChHHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      +|-.++++++.-.-..     .. ...+|+|-+++|.|+...........+...-| .++|.+|+.++.|+++++..|..
T Consensus        70 ~v~~and~~s~f~p~f-----~~-~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          70 YVHAANDPESRFPPGF-----LD-IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             eeecccCccccCCccc-----cc-ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            9999999866432211     01 12567999999999985333333334444545 47999999999999999887765

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.42  E-value=1.3e-12  Score=94.70  Aligned_cols=55  Identities=20%  Similarity=0.222  Sum_probs=47.3

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      .+.++|.  ++...+|+|+|..+|++.+.|||++.     +||+-..+..+.+++++.+..+
T Consensus       134 P~qLSGG--QqQRVAIARALaM~P~vmLFDEPTSA-----LDPElv~EVL~vm~~LA~eGmT  188 (240)
T COG1126         134 PAQLSGG--QQQRVAIARALAMDPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEGMT  188 (240)
T ss_pred             ccccCcH--HHHHHHHHHHHcCCCCEEeecCCccc-----CCHHHHHHHHHHHHHHHHcCCe
Confidence            3455544  45669999999999999999999999     9999999999999999887653

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.42  E-value=1.6e-12  Score=93.63  Aligned_cols=112  Identities=17%  Similarity=0.263  Sum_probs=78.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc---CccEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~---~~~~~i   90 (221)
                      -.|.++|+.+||||+|+-++..+.+.+.+     ++..+.......+...++++|.||+.+.+.....++.   ++.+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tv-----tSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTV-----TSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCee-----eeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            57999999999999999998877544322     2333444444445556899999999988776666666   788999


Q ss_pred             EEEeCCC-hhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCC
Q 027593           91 IMFDVTA-RLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK  130 (221)
Q Consensus        91 ~v~d~~~-~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~  130 (221)
                      ||+|+.. .....++..++..+...+    ...|+++++||.|+-
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            9999653 333344444444443332    467899999999973

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=1e-12  Score=112.21  Aligned_cols=135  Identities=18%  Similarity=0.118  Sum_probs=102.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC--c------------ccCCceeEeeeEEEEecCe-EEEEEEEeCCCc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK--K------------YEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQ   72 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~--~------------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~   72 (221)
                      ....-+|+++|+.++|||||..+++...-  ..  .            .....|+|......++.+. +..++++||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            44567999999999999999999775221  11  1            1123567777777777667 499999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL  147 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~  147 (221)
                      -+|.......++-+|++++|+|+...--...-..|++....   +.|.++++||+|........-..+....++.
T Consensus        87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~  158 (697)
T COG0480          87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQLKERLGA  158 (697)
T ss_pred             cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHHHHHhCC
Confidence            99999999999999999999999988777767778777655   8999999999998765544433344444333

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.40  E-value=3.2e-12  Score=98.91  Aligned_cols=119  Identities=13%  Similarity=0.128  Sum_probs=71.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-------ccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGY   82 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~   82 (221)
                      ..+.++|+++|.+|+||||++|++++.. ........+.+...........+..+.++||||........       ..+
T Consensus        35 ~~~~~rIllvGktGVGKSSliNsIlG~~-v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~  113 (313)
T TIGR00991        35 DVSSLTILVMGKGGVGKSSTVNSIIGER-IATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF  113 (313)
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence            4678999999999999999999977543 22222232323333222222346789999999976532211       111


Q ss_pred             c--cCccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593           83 Y--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (221)
Q Consensus        83 ~--~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~  130 (221)
                      +  ...|++++|..++... +... ...+..+...++   -.++|+++|++|..
T Consensus       114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            1  2578999996654322 2222 233333333322   35789999999965

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.37  E-value=1.4e-11  Score=92.07  Aligned_cols=161  Identities=12%  Similarity=0.088  Sum_probs=91.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc-----------cc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----------GY   82 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~-----------~~   82 (221)
                      ++|+|+|.+||||||++|.+++...........+.+...........+..+.++||||.........           ..
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            5899999999999999999877665443322333343333333333457889999999543221111           11


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCcccccH---------HHHHHHHhcCceEE
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKNRQVKA---------KQVTFHRKKNLQYY  150 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~~~~~~---------~~~~~~~~~~~~~~  150 (221)
                      ....+++++|+.+. +.+-.+ ...+..+....+   -.-++|++|..|........         ....+...++-.++
T Consensus        81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            34579999999988 323222 233333333322   24578888888865432211         12244555666677


Q ss_pred             EeecC------CCCChHHHHHHHHHHHhCCCC
Q 027593          151 EISAK------SNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       151 ~~s~~------~~~~i~~~~~~l~~~l~~~~~  176 (221)
                      ..+..      ....+.+++..|-..+..+..
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g  190 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGG  190 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHcCC
Confidence            66655      345678888888887776653

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.36  E-value=1.9e-12  Score=114.19  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=83.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCC--C------------cccCCceeEeeeEEEEec----------------C
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K------------KYEPTIGVEVHPLDFFTN----------------C   59 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~--~------------~~~~~~~~~~~~~~~~~~----------------~   59 (221)
                      .....+|+|+|+.++|||||+.+|+...-.  .            ......|.+.......+.                .
T Consensus        16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            345569999999999999999998753321  0            001122333332222221                2


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      .+..+.++||||+.+|.......++.+|++++|+|+...........|......   ++|+++++||+|..
T Consensus        96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~~p~i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGE---RIRPVLTVNKMDRC  163 (843)
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---CCCEEEEEECCccc
Confidence            367889999999999988888888999999999999987655554555544333   78999999999986

>cd00066 G-alpha G protein alpha subunit

Probab=99.35  E-value=1.6e-11  Score=97.12  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=55.0

Q ss_pred             cCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEe
Q 027593           58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGN  125 (221)
Q Consensus        58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~i~v~n  125 (221)
                      ..++..+.+||++|+...+..|..++.+++++++|+|+++.          ..+.+.......+...  ..+.|+++++|
T Consensus       157 ~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~N  236 (317)
T cd00066         157 TIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLN  236 (317)
T ss_pred             EecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEcc
Confidence            34568899999999999999999999999999999999874          2233222233333222  25789999999


Q ss_pred             CCCCC
Q 027593          126 KVDVK  130 (221)
Q Consensus       126 k~D~~  130 (221)
                      |.|+-
T Consensus       237 K~D~f  241 (317)
T cd00066         237 KKDLF  241 (317)
T ss_pred             ChHHH
Confidence            99963

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.35  E-value=2.7e-12  Score=103.18  Aligned_cols=160  Identities=13%  Similarity=0.089  Sum_probs=110.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----cccccc-----
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLRDG-----   81 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----~~~~~~-----   81 (221)
                      .+.-+++|+|-|++|||||+|.+.  .......+...+|.......++....+|+++||||.-..    +....+     
T Consensus       166 p~trTlllcG~PNVGKSSf~~~vt--radvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITA  243 (620)
T KOG1490|consen  166 PNTRTLLVCGYPNVGKSSFNNKVT--RADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITA  243 (620)
T ss_pred             CCcCeEEEecCCCCCcHhhccccc--ccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHH
Confidence            445789999999999999999643  334556677777777777788888899999999994321    111111     


Q ss_pred             cccCccEEEEEEeCCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHH---HHHH-HHhcCceEEEeec
Q 027593           82 YYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK---QVTF-HRKKNLQYYEISA  154 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~---~~~~-~~~~~~~~~~~s~  154 (221)
                      ..+--.+++++.|++..  .|......+...+.....++|.|+|+||+|..... ...+   .++. ....+++++.+|+
T Consensus       244 LAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~  323 (620)
T KOG1490|consen  244 LAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSC  323 (620)
T ss_pred             HHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecc
Confidence            11222467888888754  44455556666777777899999999999986533 2332   2232 3334589999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 027593          155 KSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~  172 (221)
                      ....|+..+....+.+++
T Consensus       324 ~~eegVm~Vrt~ACe~LL  341 (620)
T KOG1490|consen  324 VQEEGVMDVRTTACEALL  341 (620)
T ss_pred             cchhceeeHHHHHHHHHH
Confidence            999999776665555443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.33  E-value=1.8e-12  Score=97.85  Aligned_cols=55  Identities=20%  Similarity=0.233  Sum_probs=46.4

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .-.++..+|  .+..+.+|++++.+++++.++|||++.     +|...+.+.++.++++..+
T Consensus       133 ~r~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~evl~ll~~l~~~  187 (258)
T COG1120         133 DRPVDELSG--GERQRVLIARALAQETPILLLDEPTSH-----LDIAHQIEVLELLRDLNRE  187 (258)
T ss_pred             cCcccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence            334566666  455568899999999999999999999     9999999999999998743

>PTZ00416 elongation factor 2; Provisional

Probab=99.33  E-value=4.2e-12  Score=111.88  Aligned_cols=116  Identities=17%  Similarity=0.189  Sum_probs=79.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCC--CCc------------ccCCceeEeeeE--EEEec--------CeEEEEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK------------YEPTIGVEVHPL--DFFTN--------CGKIRFYCW   67 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~--~~~------------~~~~~~~~~~~~--~~~~~--------~~~~~~~~~   67 (221)
                      ...+|+++|+.++|||||+++|+...-  ...            .....|++....  ...+.        +.+..+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            345999999999999999999875221  100            011123333322  22222        125779999


Q ss_pred             eCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ||||+.++.......++.+|++++|+|+...........|.....   .+.|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~---~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQ---ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHH---cCCCEEEEEEChhhh
Confidence            999999887777778899999999999998755444444433322   268999999999986

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.33  E-value=4.9e-11  Score=95.31  Aligned_cols=156  Identities=17%  Similarity=0.238  Sum_probs=112.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc--CCCC------------CcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT--GEFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~--~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      --+|+++-+-.-|||||+..++.  |.|.            .......|+|.-.+...+.+++.++.++||||+-.|...
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            35799999999999999999775  2221            122345688888888888889999999999999999999


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHHH-------HhcCce
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQ  148 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~~-------~~~~~~  148 (221)
                      ....+...|++++++|+.+..-.+.-=.....+.   .+.+-|+|+||.|.......   .+...+.       .++.+|
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            9999999999999999997643222112222222   26777889999999764322   2222222       345688


Q ss_pred             EEEeecCCCC----------ChHHHHHHHHHHH
Q 027593          149 YYEISAKSNY----------NFEKPFLYLARKL  171 (221)
Q Consensus       149 ~~~~s~~~~~----------~i~~~~~~l~~~l  171 (221)
                      .++.|+..|.          ++.-+|+.|...+
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            9998887653          4567777777754

>PRK13768 GTPase; Provisional

Probab=99.33  E-value=9.3e-12  Score=95.35  Aligned_cols=111  Identities=14%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             EEEEEeCCCccccc---ccccccc---cC--ccEEEEEEeCCChhhhccHH--HHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593           63 RFYCWDTAGQEKFG---GLRDGYY---IH--GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        63 ~~~~~D~~g~~~~~---~~~~~~~---~~--~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~i~v~nk~D~~~~  132 (221)
                      .+.+||+||+.+..   ..+..++   ..  .+++++++|++......+..  .|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            68999999976532   2222222   22  78999999997644332222  222211112237999999999998653


Q ss_pred             cccHHHHH----------------------------HHHhcC--ceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          133 QVKAKQVT----------------------------FHRKKN--LQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       133 ~~~~~~~~----------------------------~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ........                            .....+  .+++.+|++++.|++++..+|.+.+..
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~  248 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCG  248 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCC
Confidence            32221111                            111223  578999999999999999999987754

>cd01882 BMS1 Bms1

Probab=99.31  E-value=4.6e-11  Score=90.05  Aligned_cols=140  Identities=13%  Similarity=0.195  Sum_probs=82.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+...|+++|++|+|||||++.++............|.    ... +...+.++.++||||..   .........+|.+
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~---~~~l~~ak~aDvV  107 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI---NAMIDIAKVADLV  107 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH---HHHHHHHHhcCEE
Confidence            566788999999999999999986643222211112221    111 22356788999999853   1222335788999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCCCcccccHH----HH-H-HHH--hcCceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQVKAK----QV-T-FHR--KKNLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~nk~D~~~~~~~~~----~~-~-~~~--~~~~~~~~~s~~~~~~i  160 (221)
                      ++++|++........ .....+..  .+.|. ++++||.|+.+.....+    .+ . +..  ..+.+++.+|+++...+
T Consensus       108 llviDa~~~~~~~~~-~i~~~l~~--~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~~  184 (225)
T cd01882         108 LLLIDASFGFEMETF-EFLNILQV--HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGRY  184 (225)
T ss_pred             EEEEecCcCCCHHHH-HHHHHHHH--cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCCC
Confidence            999998765432221 22222222  25675 45999999853221111    11 1 111  12468999999886543

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.31  E-value=5.9e-12  Score=91.86  Aligned_cols=161  Identities=18%  Similarity=0.283  Sum_probs=104.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccc-----cccccccccCc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-----GGLRDGYYIHG   86 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-----~~~~~~~~~~~   86 (221)
                      +-||+++|.+|+|||++=.. .+..+...-....|.|.+.-...+. -++..+.+||++|++.+     .......+++.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsi-iF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~nV   82 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSI-IFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFRNV   82 (295)
T ss_pred             cceEEEeccCCCCccccchh-hhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhheeh
Confidence            35899999999999997665 4333333333444544444433332 25688999999998843     33556779999


Q ss_pred             cEEEEEEeCCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCCCcccccHH--------HHHHHHhcCceEEEeecC
Q 027593           87 QCAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKNLQYYEISAK  155 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~--------~~~~~~~~~~~~~~~s~~  155 (221)
                      +++++|||+...+--.++..+   ++.+.+.++...+.+..+|+|+.....+..        .......+++.++++|..
T Consensus        83 ~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsiw  162 (295)
T KOG3886|consen   83 QVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSIW  162 (295)
T ss_pred             eeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccchh
Confidence            999999999987655555443   455566667777888899999865322221        122334456778887766


Q ss_pred             CCCChHHHHHHHHHHHhCCC
Q 027593          156 SNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~~~~  175 (221)
                      + +..-+++..+...+..++
T Consensus       163 D-etl~KAWS~iv~~lipn~  181 (295)
T KOG3886|consen  163 D-ETLYKAWSSIVYNLIPNV  181 (295)
T ss_pred             h-HHHHHHHHHHHHhhCCCh
Confidence            4 444555666666665544

>smart00275 G_alpha G protein alpha subunit

Probab=99.31  E-value=2.2e-11  Score=97.01  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=54.5

Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNK  126 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~i~v~nk  126 (221)
                      .++..+.+||++|+...+..|..++.+++++++|+|+++-          ..+.+....+..+...  ..+.|+++++||
T Consensus       181 ~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK  260 (342)
T smart00275      181 VKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNK  260 (342)
T ss_pred             ECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEec
Confidence            3557789999999999999999999999999999999963          2233333333333222  257899999999


Q ss_pred             CCCC
Q 027593          127 VDVK  130 (221)
Q Consensus       127 ~D~~  130 (221)
                      .|+-
T Consensus       261 ~D~~  264 (342)
T smart00275      261 IDLF  264 (342)
T ss_pred             HHhH
Confidence            9973

Subunit of G proteins that contains the guanine nucleotide binding site

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.30  E-value=1.9e-12  Score=95.10  Aligned_cols=58  Identities=17%  Similarity=0.279  Sum_probs=50.0

Q ss_pred             CceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          146 NLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       146 ~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ...+..++.++|..-++  .+|+|+|.++|++.+.|||.+.     +|+...+..++.++++..+
T Consensus       139 ~~A~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a~~Vm~~l~~in~~  196 (258)
T COG3638         139 DKAYQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESAKKVMDILKDINQE  196 (258)
T ss_pred             HHHHHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhHHHHHHHHHHHHHH
Confidence            34567788888777555  8999999999999999999999     9999999999999988653

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.30  E-value=7e-11  Score=90.52  Aligned_cols=158  Identities=19%  Similarity=0.300  Sum_probs=107.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--CeEEEEEEEeCCCcccccccccccccC---c-
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIH---G-   86 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~D~~g~~~~~~~~~~~~~~---~-   86 (221)
                      .=+|+|+|.+|+|||||+.+ +.|..  .+.+..|..|....+.-.  +...++.+|-.-|..--..+....+..   + 
T Consensus        52 gk~VlvlGdn~sGKtsLi~k-lqg~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISK-LQGSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHH-hhccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            45799999999999999999 55543  334455666666555432  334678889887755333333322222   1 


Q ss_pred             cEEEEEEeCCChhhh-ccHHHHHHHHHhhcC-------------------------------------------------
Q 027593           87 QCAIIMFDVTARLTY-KNVPTWHRDLCRVCE-------------------------------------------------  116 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~-------------------------------------------------  116 (221)
                      -.+|++.+++++... +.+..|...+.++.+                                                 
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            468889999998544 555566554443321                                                 


Q ss_pred             -------------CCCEEEEEeCCCCC----c-ccccH--------HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593          117 -------------NIPIVLCGNKVDVK----N-RQVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       117 -------------~~p~i~v~nk~D~~----~-~~~~~--------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                                   ++|+++|++|||..    . ...+.        ....+|..++...+++|.+...|++.+...|++.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                         11899999999972    1 12221        2347888999999999999999999999999998


Q ss_pred             HhC
Q 027593          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +..
T Consensus       289 ~yG  291 (473)
T KOG3905|consen  289 SYG  291 (473)
T ss_pred             hcC
Confidence            765

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.29  E-value=8.6e-11  Score=96.22  Aligned_cols=157  Identities=20%  Similarity=0.211  Sum_probs=110.2

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhc--------------------CCCC---------CcccCCceeEeeeEEEE
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--------------------GEFE---------KKYEPTIGVEVHPLDFF   56 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~--------------------~~~~---------~~~~~~~~~~~~~~~~~   56 (221)
                      .+..+...++++++|+..+|||||+.+++.                    |+..         .......|++.......
T Consensus       170 ~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~  249 (603)
T KOG0458|consen  170 EQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTW  249 (603)
T ss_pred             cccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEE
Confidence            455677899999999999999999999775                    1111         12234567777777777


Q ss_pred             ecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhccH--HHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           57 TNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        57 ~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~--~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      ++-....+.++|.||+..|....-.-...+|..++|+|++...   +|+..  .+-...+.+...-.-+|+++||+|+.+
T Consensus       250 fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~  329 (603)
T KOG0458|consen  250 FESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVS  329 (603)
T ss_pred             EecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccC
Confidence            7777889999999998888777777778899999999998542   33311  122223333334567889999999864


Q ss_pred             -ccccHHHH-----HHH-Hhc-----CceEEEeecCCCCChHH
Q 027593          132 -RQVKAKQV-----TFH-RKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       132 -~~~~~~~~-----~~~-~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                       .+.+.+.+     .+. ...     .+.|++||..+|+|+-.
T Consensus       330 Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  330 WSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             ccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence             44444333     222 222     35799999999999854

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.29  E-value=4.8e-11  Score=92.34  Aligned_cols=150  Identities=19%  Similarity=0.222  Sum_probs=104.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-------------------------------cccCCceeEeeeEEEEec
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-------------------------------KYEPTIGVEVHPLDFFTN   58 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~   58 (221)
                      .+..+|.+-+|.-.=||||||-+++.....-                               ......|+|++..-..+.
T Consensus         3 ~k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFs   82 (431)
T COG2895           3 HKSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFS   82 (431)
T ss_pred             cccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecc
Confidence            3557899999999999999999988633210                               011234566666555555


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-c-----
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-R-----  132 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~-----  132 (221)
                      -....|.+-||||++.|...+..-...+|++|+++|+...  .....+-...+.....-+-+++++||+|+.+ .     
T Consensus        83 T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~G--vl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~  160 (431)
T COG2895          83 TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKG--VLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFE  160 (431)
T ss_pred             cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchh--hHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHH
Confidence            6678899999999999988777778899999999999644  2121222222333334456788889999976 2     


Q ss_pred             cccHHHHHHHHhcCc---eEEEeecCCCCChH
Q 027593          133 QVKAKQVTFHRKKNL---QYYEISAKSNYNFE  161 (221)
Q Consensus       133 ~~~~~~~~~~~~~~~---~~~~~s~~~~~~i~  161 (221)
                      ++..+...++..++.   .++++||..|.|+-
T Consensus       161 ~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         161 AIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            223344567777764   69999999999974

>TIGR00101 ureG urease accessory protein UreG

Probab=99.28  E-value=1.1e-10  Score=86.21  Aligned_cols=101  Identities=10%  Similarity=0.067  Sum_probs=61.7

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHH-H
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQ-V  139 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~-~  139 (221)
                      ....++++.|........   ..-++.++.|+|+.+......  .+...+     ...-++++||+|+.+. ....+. .
T Consensus        92 ~D~iiIEt~G~~l~~~~~---~~l~~~~i~vvD~~~~~~~~~--~~~~qi-----~~ad~~~~~k~d~~~~~~~~~~~~~  161 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS---PELADLTIFVIDVAAGDKIPR--KGGPGI-----TRSDLLVINKIDLAPMVGADLGVME  161 (199)
T ss_pred             CCEEEEECCCCCcccccc---hhhhCcEEEEEEcchhhhhhh--hhHhHh-----hhccEEEEEhhhccccccccHHHHH
Confidence            455677777742222221   112577999999987655321  111111     2344899999999742 111111 1


Q ss_pred             HHHH--hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          140 TFHR--KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       140 ~~~~--~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +...  ..+.+++++|+++|.|++++|++|.+.+.
T Consensus       162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~  196 (199)
T TIGR00101       162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL  196 (199)
T ss_pred             HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            2222  34689999999999999999999997654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.27  E-value=4.7e-12  Score=93.56  Aligned_cols=167  Identities=19%  Similarity=0.181  Sum_probs=94.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      -=-++++||+|+|||||+|. +.|.+.    |+.|             .+.+.--|+.|...+........+..+..-++
T Consensus        30 Gei~~LIGPNGAGKTTlfNl-itG~~~----P~~G-------------~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF   91 (250)
T COG0411          30 GEIVGLIGPNGAGKTTLFNL-ITGFYK----PSSG-------------TVIFRGRDITGLPPHRIARLGIARTFQITRLF   91 (250)
T ss_pred             CeEEEEECCCCCCceeeeee-eccccc----CCCc-------------eEEECCcccCCCCHHHHHhccceeeccccccc
Confidence            34689999999999999996 555443    3444             33333346666555444444444444544444


Q ss_pred             EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCC-CcccccHHHHHHHHhcCce-EEEeecCCCCChHHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV-KNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~-~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      -+++..+.   +..-....     ......+....-. ..+....+...+.+..++. ....-|.+-..-++-..+|+++
T Consensus        92 ~~lTVlEN---v~va~~~~-----~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA  163 (250)
T COG0411          92 PGLTVLEN---VAVGAHAR-----LGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA  163 (250)
T ss_pred             CCCcHHHH---HHHHhhhh-----hhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence            44443322   21110000     0000000000000 1112222333444444442 2223333333445566889999


Q ss_pred             HhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          171 LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       171 l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ++.+|+++++|||.++     +.+++..+..+.+++++..
T Consensus       164 La~~P~lLLLDEPaAG-----ln~~e~~~l~~~i~~i~~~  198 (250)
T COG0411         164 LATQPKLLLLDEPAAG-----LNPEETEELAELIRELRDR  198 (250)
T ss_pred             HhcCCCEEEecCccCC-----CCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999     9999999999999999864

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.26  E-value=7.1e-12  Score=85.55  Aligned_cols=113  Identities=24%  Similarity=0.277  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCccc-CCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +||+++|..|+|||+|+.++..+.+...+. ++.+                           +......+.+.++.++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999987666543222 2222                           222334457788999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      ++..+..++..+  |...+.... .+.|.++++||.|+.... .     ........++++|++++.++.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~-~-----~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEER-Q-----VATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhC-c-----CCHHHHHHHHHHhCCCcchhh
Confidence            999999998765  666554433 367889999999984322 1     111222345667888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.26  E-value=1.8e-10  Score=92.49  Aligned_cols=84  Identities=17%  Similarity=-0.047  Sum_probs=59.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-----------------EEEEEEEeCCCcc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-----------------KIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~D~~g~~   73 (221)
                      ...++|+++|.||||||||+|++. +.. ....+.+++|..+....+...                 ...+.++||||..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt-~~~-~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALC-KQQ-VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHh-cCc-ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            557899999999999999999964 333 355556777777666554322                 2358999999965


Q ss_pred             ccccc-------ccccccCccEEEEEEeCC
Q 027593           74 KFGGL-------RDGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        74 ~~~~~-------~~~~~~~~~~~i~v~d~~   96 (221)
                      .....       ....++.+|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            43221       122367899999999984

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.25  E-value=4.4e-10  Score=92.17  Aligned_cols=164  Identities=15%  Similarity=0.184  Sum_probs=117.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+-+.+.++|+.++|||.+++.++++.+...+..+....+......+.+..-.+.+.|.+-. ........- ..+|.
T Consensus       421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv  498 (625)
T KOG1707|consen  421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDV  498 (625)
T ss_pred             ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeee
Confidence            4667899999999999999999999998887755555555555555666677777778787654 222222222 67899


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--ccHHHHHHHHhcCce-EEEeecCCCCChHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~  165 (221)
                      ++++||.+++.+|..+....+..... ...|++.|++|+|+....  .....-+++..++++ .+.+|.+.... ..+|.
T Consensus       499 ~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf~  576 (625)
T KOG1707|consen  499 ACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELFI  576 (625)
T ss_pred             EEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHHH
Confidence            99999999999998776544433322 689999999999997643  223336788888873 56666665333 78888


Q ss_pred             HHHHHHhCCCCC
Q 027593          166 YLARKLAGDPNL  177 (221)
Q Consensus       166 ~l~~~l~~~~~~  177 (221)
                      .|+.+. ..|..
T Consensus       577 kL~~~A-~~Ph~  587 (625)
T KOG1707|consen  577 KLATMA-QYPHI  587 (625)
T ss_pred             HHHHhh-hCCCc
Confidence            888854 45553

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.23  E-value=2.7e-11  Score=105.72  Aligned_cols=116  Identities=22%  Similarity=0.208  Sum_probs=78.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCC--CCcc------------cCCceeEeeeEEE----EecCeEEEEEEEeCCCcc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKY------------EPTIGVEVHPLDF----FTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~--~~~~------------~~~~~~~~~~~~~----~~~~~~~~~~~~D~~g~~   73 (221)
                      +.-+|+++|+.++|||||+.+++...-  ....            ....|++......    ...+.+..+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            345799999999999999999875221  1000            0112233332222    223456889999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ++.......+..+|++++|+|+...........|......   +.|.++++||+|..
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---RVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---CCCeEEEEECchhh
Confidence            8877777788999999999998876444433444432222   56889999999975

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.22  E-value=1.6e-10  Score=91.08  Aligned_cols=102  Identities=11%  Similarity=0.025  Sum_probs=63.8

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---  137 (221)
                      +..+.++||+|......   .....+|.++++.+..........   ...+.    ....++|+||+|+........   
T Consensus       148 g~d~viieT~Gv~qs~~---~i~~~aD~vlvv~~p~~gd~iq~~---k~gi~----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSET---AVAGMVDFFLLLQLPGAGDELQGI---KKGIM----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccchh---HHHHhCCEEEEEecCCchHHHHHH---Hhhhh----hhhheEEeehhcccchhHHHHHHH
Confidence            46789999999663222   246679999999663333332221   11111    233489999999865332111   


Q ss_pred             HHH-HHHh-------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          138 QVT-FHRK-------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       138 ~~~-~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ... ....       ...+++.+|++++.|+++++..|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            111 1111       1257999999999999999999998765

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.22  E-value=1.8e-10  Score=102.31  Aligned_cols=100  Identities=20%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             EEEEeCCCcccccccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc--c---
Q 027593           64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K---  135 (221)
Q Consensus        64 ~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~--~---  135 (221)
                      +.+|||||++.+...+...+..+|++++|+|+++.   .++..+.    .+..  .+.|+++++||+|+.....  .   
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~  601 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ--YKTPFVVAANKIDLIPGWNISEDEP  601 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH--cCCCEEEEEECCCCccccccccchh
Confidence            89999999998887777777889999999999873   3333222    2222  2689999999999853110  0   


Q ss_pred             ---------HHHH-HH----------HH---------------hcCceEEEeecCCCCChHHHHHHHHH
Q 027593          136 ---------AKQV-TF----------HR---------------KKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       136 ---------~~~~-~~----------~~---------------~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                               .... ++          ..               ...++++++||++|.|++++...|..
T Consensus       602 ~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        602 FLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                     0000 00          01               12458999999999999999987754

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.22  E-value=6.8e-10  Score=91.35  Aligned_cols=164  Identities=23%  Similarity=0.293  Sum_probs=109.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC--eEEEEEEEeCCCcccccccccccccC-
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYIH-   85 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~~~~~~~~~~~~~-   85 (221)
                      ...++-.|+|+|..++|||||+.+| .+..  ...++.+..|....+.-.+  ...++++|-..|...+..+....+.. 
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L-~~~e--~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARL-QGIE--DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHh-hccC--CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            4455679999999999999999995 4432  3345666666665544322  23578999998866555555444332 


Q ss_pred             ---ccEEEEEEeCCChhhhc-cHHHHHHHHHhhc------------------------------C---------------
Q 027593           86 ---GQCAIIMFDVTARLTYK-NVPTWHRDLCRVC------------------------------E---------------  116 (221)
Q Consensus        86 ---~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~------------------------------~---------------  116 (221)
                         --.+++|.|.+.+..+. .+..|+..+..+.                              .               
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence               24688899999886653 3333322211110                              0               


Q ss_pred             ------------------CCCEEEEEeCCCCCc----c-cccH--------HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593          117 ------------------NIPIVLCGNKVDVKN----R-QVKA--------KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus       117 ------------------~~p~i~v~nk~D~~~----~-~~~~--------~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                                        ++|++||++|+|...    . ....        -.+.+|..+|...|++|++...+++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                              149999999999622    1 1111        13467888999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027593          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      .|.+.+...|
T Consensus       258 yi~h~l~~~~  267 (472)
T PF05783_consen  258 YILHRLYGFP  267 (472)
T ss_pred             HHHHHhccCC
Confidence            9999887643

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.21  E-value=2.3e-11  Score=96.60  Aligned_cols=157  Identities=17%  Similarity=0.247  Sum_probs=75.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCC---ceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----c
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT---IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~   83 (221)
                      ..++|+|+|.+|+|||||||++.+-.........   ..+|.....+.. .....+.+||.||..........|     +
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~-p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~  112 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPH-PKFPNVTLWDLPGIGTPNFPPEEYLKEVKF  112 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE--SS-TTEEEEEE--GGGSS--HHHHHHHTTG
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCC-CCCCCCeEEeCCCCCCCCCCHHHHHHHccc
Confidence            4689999999999999999996431111111111   122233332221 222468999999965433333333     5


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC--c------ccccHHH-HHH--------HHhcC
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N------RQVKAKQ-VTF--------HRKKN  146 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~--~------~~~~~~~-~~~--------~~~~~  146 (221)
                      ...|.+|++.+-.-...-.   .+...+...  ++|+++|.+|+|..  .      +....+. .+.        ....+
T Consensus       113 ~~yD~fiii~s~rf~~ndv---~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~g  187 (376)
T PF05049_consen  113 YRYDFFIIISSERFTENDV---QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAG  187 (376)
T ss_dssp             GG-SEEEEEESSS--HHHH---HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT
T ss_pred             cccCEEEEEeCCCCchhhH---HHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcC
Confidence            5678887776643332211   222333333  89999999999961  1      1111111 111        11123


Q ss_pred             c---eEEEeecCCC--CChHHHHHHHHHHHhCC
Q 027593          147 L---QYYEISAKSN--YNFEKPFLYLARKLAGD  174 (221)
Q Consensus       147 ~---~~~~~s~~~~--~~i~~~~~~l~~~l~~~  174 (221)
                      +   ++|-+|+.+-  .+...+...|.+.|...
T Consensus       188 v~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~  220 (376)
T PF05049_consen  188 VSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH  220 (376)
T ss_dssp             -SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred             CCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence            2   5777887763  45667777777766554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.20  E-value=1.9e-11  Score=90.65  Aligned_cols=52  Identities=17%  Similarity=0.206  Sum_probs=45.0

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+..+  |.++...+|+|++..+|++.+.|||+.+     +|.++.+...+.++++..+
T Consensus       140 p~eLS--GGqqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~~~V~~ll~~~~~~  191 (226)
T COG1136         140 PSELS--GGQQQRVAIARALINNPKIILADEPTGN-----LDSKTAKEVLELLRELNKE  191 (226)
T ss_pred             chhcC--HHHHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHHHHHHHHHHHHHHh
Confidence            44454  5556669999999999999999999999     9999999999999998654

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.19  E-value=2.4e-11  Score=92.02  Aligned_cols=107  Identities=13%  Similarity=0.167  Sum_probs=54.4

Q ss_pred             EEEEEeCCCccccccccccc------c--cCccEEEEEEeCCCh---hhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCC
Q 027593           63 RFYCWDTAGQEKFGGLRDGY------Y--IHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK  130 (221)
Q Consensus        63 ~~~~~D~~g~~~~~~~~~~~------~--~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~  130 (221)
                      .+.++|||||.+.-..+...      +  ...-++++++|+.-.   ..|-.  .++....... -..|.+.|+||+|+.
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~lP~vnvlsK~Dl~  169 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLELPHVNVLSKIDLL  169 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHH--HHHHHHHHHhhCCCCEEEeeeccCcc
Confidence            68999999998754433322      2  233467777776533   33322  2222211111 289999999999997


Q ss_pred             ccccc--HH----------------------HHHHHHhcC-c-eEEEeecCCCCChHHHHHHHHHHH
Q 027593          131 NRQVK--AK----------------------QVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       131 ~~~~~--~~----------------------~~~~~~~~~-~-~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .....  .+                      ........+ . .++++|+.++.++.+++..+-+++
T Consensus       170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            62200  00                      001111122 3 699999999999999998887765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.18  E-value=4.6e-10  Score=83.65  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCc--eeEeee------EEEEec------------------
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTI--GVEVHP------LDFFTN------------------   58 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~--~~~~~~------~~~~~~------------------   58 (221)
                      .+.....|+|+|+.|+|||||+++++.......    .....  +.+...      ....+.                  
T Consensus        18 ~~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~   97 (207)
T TIGR00073        18 DKHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALED   97 (207)
T ss_pred             hhcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHH
Confidence            344567899999999999999999765311000    00000  000000      000000                  


Q ss_pred             --CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc--
Q 027593           59 --CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--  134 (221)
Q Consensus        59 --~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~--  134 (221)
                        ..+..+.++++.|.-...   ..+....+..+.|+|+.+....  +......     ...|.++++||+|+.....  
T Consensus        98 ~~~~~~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~--~~~~~~~-----~~~a~iiv~NK~Dl~~~~~~~  167 (207)
T TIGR00073        98 LPLDDIDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDK--PLKYPGM-----FKEADLIVINKADLAEAVGFD  167 (207)
T ss_pred             hccCCCCEEEEecCCCcCCC---cccccccCeEEEEEecCcccch--hhhhHhH-----HhhCCEEEEEHHHccccchhh
Confidence              012456677777721100   1111233445567776644221  1111111     1567899999999965321  


Q ss_pred             cHHHHHHHHh--cCceEEEeecCCCCChHHHHHHHHHH
Q 027593          135 KAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       135 ~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ..+.......  ...+++.+|++++.|++++++++.+.
T Consensus       168 ~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       168 VEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            1122222222  24789999999999999999999774

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.17  E-value=1.8e-10  Score=87.86  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=76.0

Q ss_pred             ccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEE
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYY  150 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~  150 (221)
                      +++..+.+.+++++|.+++|+|++++. ++..+..|+..+..  .+.|.++|+||+|+.... ...+........+.+++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~  101 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL  101 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence            567778888999999999999999877 88889899876644  489999999999996432 22233344445788999


Q ss_pred             EeecCCCCChHHHHHHHHH
Q 027593          151 EISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~  169 (221)
                      .+|+++|.|++++|..+..
T Consensus       102 ~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       102 MTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEecCCchhHHHHHhhhcC
Confidence            9999999999999987653

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.17  E-value=1.1e-09  Score=87.28  Aligned_cols=142  Identities=18%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCC---C-----------cccCCce---eEeeeEE-------EE-ecCeEEEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE---K-----------KYEPTIG---VEVHPLD-------FF-TNCGKIRFYCW   67 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~---~-----------~~~~~~~---~~~~~~~-------~~-~~~~~~~~~~~   67 (221)
                      .+.|+|+|+.++|||||+|+|..-...   .           ...+..|   +|..+..       +. .++....+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            488999999999999999996543111   1           2233445   4444433       11 13445788999


Q ss_pred             eCCCccccc-------cc----------------------cccccc-CccEEEEEE-eCCC----hhhhc-cHHHHHHHH
Q 027593           68 DTAGQEKFG-------GL----------------------RDGYYI-HGQCAIIMF-DVTA----RLTYK-NVPTWHRDL  111 (221)
Q Consensus        68 D~~g~~~~~-------~~----------------------~~~~~~-~~~~~i~v~-d~~~----~~s~~-~~~~~~~~~  111 (221)
                      ||+|.....       ..                      ....+. ++++.++|. |.+-    ++.+. .-..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            999933211       01                      122244 788888887 6541    11222 223556666


Q ss_pred             HhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCC
Q 027593          112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus       112 ~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (221)
                      ...  ++|+++++||.|-..........++...++++++.+|+..
T Consensus       177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~  219 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVES  219 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHH
Confidence            554  8999999999994322222222244566778877776553

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.17  E-value=1.8e-10  Score=85.77  Aligned_cols=47  Identities=23%  Similarity=0.286  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |..+...+|++++..+|+++++|||.+.     +|..++....+.+.+++.+
T Consensus       133 GGMrQRVaiARAL~~~P~lLLlDEPFgA-----LDalTR~~lq~~l~~lw~~  179 (248)
T COG1116         133 GGMRQRVAIARALATRPKLLLLDEPFGA-----LDALTREELQDELLRLWEE  179 (248)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEcCCcch-----hhHHHHHHHHHHHHHHHHh
Confidence            4556669999999999999999999999     9999999999999888664

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.15  E-value=3.1e-10  Score=80.88  Aligned_cols=53  Identities=15%  Similarity=0.125  Sum_probs=45.3

Q ss_pred             ecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +.++  |.++....|++++..+|.+++.|||+.+     +|+....+++..++++.....
T Consensus       136 ~~LS--GGEQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~~im~lfeeinr~Gt  188 (223)
T COG2884         136 SQLS--GGEQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSWEIMRLFEEINRLGT  188 (223)
T ss_pred             cccC--chHHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHHHHHHHHHHHhhcCc
Confidence            4444  4456669999999999999999999999     999999999999999876543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.14  E-value=2.3e-10  Score=90.93  Aligned_cols=134  Identities=21%  Similarity=0.252  Sum_probs=95.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc-CCCCC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      .-+.+|+-+|.+|||||-.+++. |....                   ......|+++.+...++++.+..+.+.||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            45789999999999999988653 22211                   12234567777777788888999999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEE
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYY  150 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~  150 (221)
                      +.|..-.-..+..+|.+++|+|+....--..     ..+...|  .+.|++=++||.|...+..-.-.-+....+++.+.
T Consensus        92 eDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT-----~KLfeVcrlR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~  166 (528)
T COG4108          92 EDFSEDTYRTLTAVDSAVMVIDAAKGIEPQT-----LKLFEVCRLRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCA  166 (528)
T ss_pred             cccchhHHHHHHhhheeeEEEecccCccHHH-----HHHHHHHhhcCCceEEEeeccccccCChHHHHHHHHHHhCccee
Confidence            9998877778889999999999886522221     1222222  48999999999998876544433345555555444


Q ss_pred             E
Q 027593          151 E  151 (221)
Q Consensus       151 ~  151 (221)
                      +
T Consensus       167 P  167 (528)
T COG4108         167 P  167 (528)
T ss_pred             c
Confidence            4

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=2.9e-10  Score=86.91  Aligned_cols=154  Identities=20%  Similarity=0.252  Sum_probs=89.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ..+|+|.+|+|||||++. +++-    ..|+.|      .+.+++.  .+.-++-.+....+....+.+.+.+.+     
T Consensus        34 I~GIIG~SGAGKSTLiR~-iN~L----e~PtsG------~v~v~G~--di~~l~~~~Lr~~R~~IGMIFQhFnLL-----   95 (339)
T COG1135          34 IFGIIGYSGAGKSTLLRL-INLL----ERPTSG------SVFVDGQ--DLTALSEAELRQLRQKIGMIFQHFNLL-----   95 (339)
T ss_pred             EEEEEcCCCCcHHHHHHH-Hhcc----CCCCCc------eEEEcCE--ecccCChHHHHHHHhhccEEecccccc-----
Confidence            468999999999999996 3322    234555      4445543  222223333333444444444443322     


Q ss_pred             CCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEEEeecCCCCChHHHHHHHHHHH
Q 027593           95 VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                       +.+.-|+++..            |.-+.+    ..+........++....+.   .-.+.+.++|.+.+  ...|+|++
T Consensus        96 -ssrTV~~NvA~------------PLeiag----~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQ--RVaIARAL  156 (339)
T COG1135          96 -SSRTVFENVAF------------PLELAG----VPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQ--RVAIARAL  156 (339)
T ss_pred             -ccchHHhhhhh------------hHhhcC----CCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhh--HHHHHHHH
Confidence             22223333322            222211    0111112222233333332   23334666666655  48999999


Q ss_pred             hCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       172 ~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ..+|++++.||+++.     +||+..+.+++.++++..+
T Consensus       157 a~~P~iLL~DEaTSA-----LDP~TT~sIL~LL~~In~~  190 (339)
T COG1135         157 ANNPKILLCDEATSA-----LDPETTQSILELLKDINRE  190 (339)
T ss_pred             hcCCCEEEecCcccc-----CChHHHHHHHHHHHHHHHH
Confidence            999999999999999     9999999999999988654

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.12  E-value=1.4e-09  Score=84.43  Aligned_cols=116  Identities=19%  Similarity=0.214  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-------
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------   75 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------   75 (221)
                      .++|+|+|.+|+|||||+|.|+........          ..+..+........-++..+.+.++||||.-..       
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999997764443321          112223333334445667789999999992211       


Q ss_pred             -------------------cccc-cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           76 -------------------GGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        76 -------------------~~~~-~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                                         ...+ ...=...++++++++.+... ...  .-+..+.......++|.|+.|+|...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~--~Di~~mk~Ls~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKP--LDIEFMKRLSKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-H--HHHHHHHHHTTTSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chH--HHHHHHHHhcccccEEeEEecccccC
Confidence                               0000 00012468899999876431 111  12234444455788999999999854

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.8e-10  Score=86.78  Aligned_cols=55  Identities=15%  Similarity=0.137  Sum_probs=46.7

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ......++|...+.  .+|+..+..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       133 ~r~p~~LSGGqkqR--vaIA~vLa~~P~iliLDEPta~-----LD~~~~~~l~~~l~~L~~~  187 (235)
T COG1122         133 DRPPFNLSGGQKQR--VAIAGVLAMGPEILLLDEPTAG-----LDPKGRRELLELLKKLKEE  187 (235)
T ss_pred             cCCccccCCcceee--HHhhHHHHcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence            34455556666555  8899999999999999999999     9999999999999998776

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.11  E-value=1.7e-10  Score=85.40  Aligned_cols=47  Identities=23%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.+....+|++++..+|+++++|||++.     +|...+.++...+.++..+
T Consensus       144 GGQ~QRiaIARAL~~~PklLIlDEptSa-----LD~siQa~IlnlL~~l~~~  190 (252)
T COG1124         144 GGQRQRIAIARALIPEPKLLILDEPTSA-----LDVSVQAQILNLLLELKKE  190 (252)
T ss_pred             hhHHHHHHHHHHhccCCCEEEecCchhh-----hcHHHHHHHHHHHHHHHHh
Confidence            4455668999999999999999999999     9999999999999987654

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.09  E-value=1.9e-09  Score=84.38  Aligned_cols=53  Identities=21%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +...++...+  ...|+.++..+|+++++|||+.+     +|+..+.+..+.+++++.+.
T Consensus       134 ~~~lS~G~kq--rl~ia~aL~~~P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~~g  186 (293)
T COG1131         134 VRTLSGGMKQ--RLSIALALLHDPELLILDEPTSG-----LDPESRREIWELLRELAKEG  186 (293)
T ss_pred             hhhcCHHHHH--HHHHHHHHhcCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            4445544444  46799999999999999999999     99999999999999987764

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=3e-09  Score=82.42  Aligned_cols=159  Identities=17%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-----CcccCCceeEeeeE--EEEe-------cCeEEEEEEEeCCCccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-----KKYEPTIGVEVHPL--DFFT-------NCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~-------~~~~~~~~~~D~~g~~~~~   76 (221)
                      ...++++++|+-.||||||.+++..-.--     ...+...|.|.+.-  ..++       .+...++.++|+||+...-
T Consensus         5 p~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI   84 (522)
T KOG0461|consen    5 PSNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI   84 (522)
T ss_pred             CceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence            34699999999999999999996531111     11122233333321  1111       2455778999999976433


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCcccccH---HHH--HHHHh------
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQV--TFHRK------  144 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~---~~~--~~~~~------  144 (221)
                      +..-.-..-.|..++|+|+....-.....- .+..+.    ....++|+||.|......+.   +..  +..+.      
T Consensus        85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f  160 (522)
T KOG0461|consen   85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGF  160 (522)
T ss_pred             HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCc
Confidence            332233344588999999987644433321 122221    35567788888864432111   111  11111      


Q ss_pred             -cCceEEEeecCCC----CChHHHHHHHHHHHhC
Q 027593          145 -KNLQYYEISAKSN----YNFEKPFLYLARKLAG  173 (221)
Q Consensus       145 -~~~~~~~~s~~~~----~~i~~~~~~l~~~l~~  173 (221)
                       -+.|.+++|+..|    +++.++...|..++..
T Consensus       161 ~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  161 DGNSPIVEVSAADGYFKEEMIQELKEALESRIFE  194 (522)
T ss_pred             CCCCceeEEecCCCccchhHHHHHHHHHHHhhcC
Confidence             1378999999999    6777777777776654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.08  E-value=1.8e-09  Score=79.44  Aligned_cols=48  Identities=17%  Similarity=0.247  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-++...+|+++|+.+|+++++|||+.+     +.|.-.+++.+.+++++.+
T Consensus       138 SGGEQQMLAiaRALm~~PklLLLDEPs~G-----LaP~iv~~I~~~i~~l~~~  185 (237)
T COG0410         138 SGGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIKELRKE  185 (237)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEecCCccC-----cCHHHHHHHHHHHHHHHHc
Confidence            37778889999999999999999999999     9999999999999998753

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.1e-09  Score=80.72  Aligned_cols=160  Identities=16%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---cccccccCccEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQCA   89 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~~~   89 (221)
                      +.+|.++|...||||++.+. ++.+..+..+-....|.....-.+.+.-+.+.+||.|||-.+-.   -..+.++.+.++
T Consensus        27 kp~ilLMG~rRsGKsSI~KV-VFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gAL  105 (347)
T KOG3887|consen   27 KPRILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGAL  105 (347)
T ss_pred             CceEEEEeecccCcchhhhe-eeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeE
Confidence            45699999999999999987 66666554333333333333333444557899999999876432   235568999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHh---hcCCCCEEEEEeCCCCCcccccH-----------HHHHHHHhcCc-eEEEeec
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNRQVKA-----------KQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~---~~~~~p~i~v~nk~D~~~~~~~~-----------~~~~~~~~~~~-~~~~~s~  154 (221)
                      ++|+|+.+. ..+.+.++...+.+   ..+++.+-+++.|.|........           +.+......++ ..|.+.+
T Consensus       106 ifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTS  184 (347)
T KOG3887|consen  106 IFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTS  184 (347)
T ss_pred             EEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEee
Confidence            999998864 33344444333333   34678888999999974422211           11111122222 2344445


Q ss_pred             CCCCChHHHHHHHHHHHhCC
Q 027593          155 KSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~~  174 (221)
                      .....+-++|..+++.|...
T Consensus       185 IyDHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  185 IYDHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             ecchHHHHHHHHHHHHHhhh
Confidence            66788999999999988743

>smart00053 DYNc Dynamin, GTPase

Probab=99.07  E-value=1.1e-09  Score=82.65  Aligned_cols=69  Identities=9%  Similarity=0.095  Sum_probs=43.7

Q ss_pred             EEEEEEeCCCcccc-------------ccccccccc-CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593           62 IRFYCWDTAGQEKF-------------GGLRDGYYI-HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        62 ~~~~~~D~~g~~~~-------------~~~~~~~~~-~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~  127 (221)
                      ..+.++|+||....             ..+...|+. ..+++++|+|+.....-.....+...+..  ...|+++|+||+
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence            56889999997521             112334555 34688899988764333332233333332  378999999999


Q ss_pred             CCCcc
Q 027593          128 DVKNR  132 (221)
Q Consensus       128 D~~~~  132 (221)
                      |..+.
T Consensus       203 D~~~~  207 (240)
T smart00053      203 DLMDE  207 (240)
T ss_pred             CCCCc
Confidence            98754

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.05  E-value=1.3e-09  Score=85.68  Aligned_cols=101  Identities=11%  Similarity=-0.015  Sum_probs=62.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---  137 (221)
                      ++.+.++||+|.....   ......+|.++++....   +..++..+...+    ..+|.++++||+|+........   
T Consensus       126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence            5678899999854211   22455677777774322   223333333222    2678899999999875432110   


Q ss_pred             H-----HHHHH---hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          138 Q-----VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       138 ~-----~~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .     .....   ....+++.+|++++.|+++++.+|.+.+
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            0     01111   1224689999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.05  E-value=3.9e-10  Score=91.79  Aligned_cols=157  Identities=21%  Similarity=0.360  Sum_probs=119.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +.+++|++|+|..++|||+|+.+|+.|.+.+...+.-  ......+.++++...+.+.|.+|...     ..|-..+|++
T Consensus        27 sipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdav   99 (749)
T KOG0705|consen   27 SIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAV   99 (749)
T ss_pred             ccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccce
Confidence            6789999999999999999999999999877544333  45566777788888999999888332     3456678999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc----ccccHHHH-HHHHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN----RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~----~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      |+||...+..+|+.+..+...+....  ...|+++++++--...    .....+.. ..+....+.+|++++.+|-++..
T Consensus       100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r  179 (749)
T KOG0705|consen  100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER  179 (749)
T ss_pred             EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence            99999999999998887776665442  4678888887743321    11222222 34455568899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      .|+.+...+..
T Consensus       180 vf~~~~~k~i~  190 (749)
T KOG0705|consen  180 VFQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHHH
Confidence            99999887754

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.04  E-value=1.5e-09  Score=78.11  Aligned_cols=63  Identities=17%  Similarity=0.186  Sum_probs=43.3

Q ss_pred             EEEEEeCCCcccc----cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593           63 RFYCWDTAGQEKF----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        63 ~~~~~D~~g~~~~----~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~  127 (221)
                      .+.++||||....    ...+..++..+|++++|.++....+-.....+.......  ...+++|.||.
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            3789999996432    244566789999999999999866655555555544433  44588888984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.02  E-value=1.4e-09  Score=77.16  Aligned_cols=47  Identities=19%  Similarity=0.222  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.++...++++++.+...++++|||.+.     +|+.-+.+..+.+.++..+
T Consensus       132 GGqRQRvALARclvR~~PilLLDEPFsA-----LdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840         132 GGQRQRVALARCLVREQPILLLDEPFSA-----LDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             chHHHHHHHHHHHhccCCeEEecCchhh-----cCHHHHHHHHHHHHHHHHh
Confidence            4456669999999999999999999999     9999999999998887554

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.00  E-value=6.4e-09  Score=75.28  Aligned_cols=46  Identities=11%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....+++++..+|+++++|||..+     +|....+...+.++++..
T Consensus        74 gGq~qrv~laral~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~  119 (177)
T cd03222          74 GGELQRVAIAAALLRNATFYLFDEPSAY-----LDIEQRLNAARAIRRLSE  119 (177)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4446668899999999999999999999     999999999999987654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.00  E-value=1.6e-09  Score=85.14  Aligned_cols=119  Identities=14%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             EEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhh--cc-----HH---HHHHHHHhh--cCCCCEEE
Q 027593           55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY--KN-----VP---TWHRDLCRV--CENIPIVL  122 (221)
Q Consensus        55 ~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~--~~-----~~---~~~~~~~~~--~~~~p~i~  122 (221)
                      ..+...+..+.++|++||...+..|.+.+.++++++||+++++-.-.  ++     +.   .+...+...  ..+.++|+
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            33444668999999999999999999999999999999999864322  11     11   112222111  14789999


Q ss_pred             EEeCCCCCcccc-----------------cHHHHH-----HH---Hh--cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          123 CGNKVDVKNRQV-----------------KAKQVT-----FH---RK--KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       123 v~nk~D~~~~~~-----------------~~~~~~-----~~---~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ++||.|+-...+                 ..+...     +.   ..  ..+.+..++|.+..+++.+|......+..
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            999999722110                 011111     11   11  23455666777778888888777766543

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.00  E-value=5.6e-09  Score=80.15  Aligned_cols=163  Identities=17%  Similarity=0.131  Sum_probs=101.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-cCCceeEee--------------------eEEEEec------CeEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-EPTIGVEVH--------------------PLDFFTN------CGKI   62 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-~~~~~~~~~--------------------~~~~~~~------~~~~   62 (221)
                      .+++++|+++|+-.-|||||.+++.+-+...-. .-..|++..                    .....+.      .--.
T Consensus         7 ~Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           7 IQPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CCcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            478999999999999999999996653221100 000111110                    0000111      1125


Q ss_pred             EEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH---
Q 027593           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV---  139 (221)
Q Consensus        63 ~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~---  139 (221)
                      ++.++|.||++-.-.....-..-.|++++|+.++.+-....-+.-+-.+ ....-+-++++=||.|+..++...+..   
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Al-eIigik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMAL-EIIGIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHH-hhhccceEEEEecccceecHHHHHHHHHHH
Confidence            7899999998854433333333458999999988764433322222222 222456778888999998755444332   


Q ss_pred             -HHHH---hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 -TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 -~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                       ++.+   ..+.+.+++||..+.|++-++..|.+.+..
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence             2222   246799999999999999999999997654

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=98.99  E-value=7e-09  Score=87.35  Aligned_cols=119  Identities=10%  Similarity=0.061  Sum_probs=70.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc----------ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~~   81 (221)
                      ..++|+|+|.+|+||||++|.+++...........+++.. ........+..+.++||||.......          ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            3579999999999999999997765433222222333332 22211123468999999996643210          111


Q ss_pred             ccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCc
Q 027593           82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN  131 (221)
Q Consensus        82 ~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~  131 (221)
                      ++.  ..|++++|..++.......-..++..+...+.   -.-+||++|..|...
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            222  46899999877643332222244555544442   356789999999753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.99  E-value=1.9e-09  Score=78.32  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -|+..-.|.++...-|+|+|.-+|+++++|||++.     +||-+...+++.+.++..+
T Consensus       145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIsT~kIEeLi~eLk~~  198 (253)
T COG1117         145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPISTLKIEELITELKKK  198 (253)
T ss_pred             CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchhHHHHHHHHHHHHhc
Confidence            34454446667777899999999999999999999     9999999999998888654

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=98.99  E-value=1.7e-09  Score=86.09  Aligned_cols=81  Identities=15%  Similarity=-0.010  Sum_probs=55.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------EEEEEEeCCCccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------IRFYCWDTAGQEKFG   76 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~   76 (221)
                      ++|+++|.|+||||||+|+++...  ......+++|..+....+...+                 ..+.++|+||.....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            689999999999999999966554  3445556666665543332111                 358999999965422


Q ss_pred             ccc-------cccccCccEEEEEEeCC
Q 027593           77 GLR-------DGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        77 ~~~-------~~~~~~~~~~i~v~d~~   96 (221)
                      ...       ...++.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            211       12267899999999985

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.98  E-value=9.6e-10  Score=86.86  Aligned_cols=57  Identities=21%  Similarity=0.262  Sum_probs=46.2

Q ss_pred             ceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          147 LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       147 ~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ...-..+.++|.+  +...+|+++|..+|.++++|||.+.     +|..-+.+...+++++..+
T Consensus       129 ~~~R~p~qLSGGQ--qQRVALARAL~~~P~vLLLDEPlSa-----LD~kLR~~mr~Elk~lq~~  185 (352)
T COG3842         129 FADRKPHQLSGGQ--QQRVALARALVPEPKVLLLDEPLSA-----LDAKLREQMRKELKELQRE  185 (352)
T ss_pred             hhhhChhhhChHH--HHHHHHHHHhhcCcchhhhcCcccc-----hhHHHHHHHHHHHHHHHHh
Confidence            3344456666555  5559999999999999999999999     9999999999988887654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=3.7e-10  Score=92.97  Aligned_cols=199  Identities=17%  Similarity=0.115  Sum_probs=128.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCC--C--C------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEF--E--K------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~--~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   76 (221)
                      .-+|++.-+-.+||||+-++++.-.-  .  .            ......|++...--..+.+.+.++.++||||+-.|.
T Consensus        39 ~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvDFT  118 (721)
T KOG0465|consen   39 IRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVDFT  118 (721)
T ss_pred             hcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCceeEE
Confidence            34689999999999999998663111  0  0            111234555555555556668899999999999998


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc--eEEEeec
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISA  154 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~--~~~~~s~  154 (221)
                      -.....++-.|++++|+++...---.....|++.-+.   +.|.+.++||+|........-.......++.  .++.+..
T Consensus       119 ~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPi  195 (721)
T KOG0465|consen  119 FEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPI  195 (721)
T ss_pred             EEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc---CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccc
Confidence            8888889999999999998876554556677766544   8999999999998775544433333333332  3333333


Q ss_pred             CCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCccc
Q 027593          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAF  220 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (221)
                      ..    +..|..++..+. ...+++-.+.-.. -....-++..+....+.++...+-+++.||++.
T Consensus       196 g~----e~~f~GvvDlv~-~kai~~~g~~g~~-i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~  255 (721)
T KOG0465|consen  196 GS----ESNFKGVVDLVN-GKAIYWDGENGEI-VRKDEIPEDLEELAEEKRQALIETLADVDETLA  255 (721)
T ss_pred             cc----cccchhHHhhhh-ceEEEEcCCCCce-eEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            32    335555666433 3333333222111 111345667777777777777888888888753

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=2.6e-09  Score=88.98  Aligned_cols=115  Identities=17%  Similarity=0.211  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----------------cCCceeEeeeEEEEe-----cCeEEEEEEEeC
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------------EPTIGVEVHPLDFFT-----NCGKIRFYCWDT   69 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-----~~~~~~~~~~D~   69 (221)
                      ....+|+++|+-++|||+|+..+.. ..++..                ....|++.+....++     .+...-++++||
T Consensus       126 ~~irnV~l~GhLhhGKT~l~D~Lv~-~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT  204 (971)
T KOG0468|consen  126 ERIRNVGLVGHLHHGKTALMDLLVE-QTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT  204 (971)
T ss_pred             ceEEEEEEeeccccChhHHHHhhce-eccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence            4568999999999999999997543 222221                112344444444332     355678999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027593           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (221)
Q Consensus        70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~  129 (221)
                      ||+-++.......++.+|++++|+|+...-.+..-+.....+..   +.|+++|+||.|.
T Consensus       205 PGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~---~~~i~vviNKiDR  261 (971)
T KOG0468|consen  205 PGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQN---RLPIVVVINKVDR  261 (971)
T ss_pred             CCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhc---cCcEEEEEehhHH
Confidence            99999998888889999999999999987665443333333333   8999999999996

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=5.6e-09  Score=79.23  Aligned_cols=145  Identities=17%  Similarity=0.079  Sum_probs=96.7

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--------------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      .-.++.++|+.+|+-.-|||||..++..-..              ..+.....|+|++...+...-.+.++..+|+||+.
T Consensus         7 ~r~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa   86 (394)
T COG0050           7 ERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA   86 (394)
T ss_pred             cCCCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence            3467889999999999999999887543111              01223456788888777777778899999999998


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC-CEEEEEeCCCCCccccc-----HHHHHHHHhcC-
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQVK-----AKQVTFHRKKN-  146 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p~i~v~nk~D~~~~~~~-----~~~~~~~~~~~-  146 (221)
                      .|-...-.-..+.|+.|+|+++.+..-.+.....+  +.+.. +. .+++++||+|+.+....     .+..++...++ 
T Consensus        87 DYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiL--larqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f  163 (394)
T COG0050          87 DYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL--LARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGF  163 (394)
T ss_pred             HHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhh--hhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCC
Confidence            87665555566789999999999875444322111  11222 44 45677799999863322     23344555554 


Q ss_pred             ----ceEEEeecC
Q 027593          147 ----LQYYEISAK  155 (221)
Q Consensus       147 ----~~~~~~s~~  155 (221)
                          .|.+.-|++
T Consensus       164 ~gd~~Pii~gSal  176 (394)
T COG0050         164 PGDDTPIIRGSAL  176 (394)
T ss_pred             CCCCcceeechhh
Confidence                456665554

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.98  E-value=2.1e-08  Score=75.46  Aligned_cols=45  Identities=29%  Similarity=0.340  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++.
T Consensus       134 gG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~~~  178 (220)
T cd03293         134 GGMRQRVALARALAVDPDVLLLDEPFSA-----LDALTREQLQEELLDIW  178 (220)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     99999999999998864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=4.9e-09  Score=88.27  Aligned_cols=159  Identities=21%  Similarity=0.207  Sum_probs=102.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCC----CcccCCceeEeeeEEE--------Eec----CeEEEEEEEeCCCcc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYEPTIGVEVHPLDF--------FTN----CGKIRFYCWDTAGQE   73 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~----~~~~~~~~~~~~~~~~--------~~~----~~~~~~~~~D~~g~~   73 (221)
                      .-+..-|||+|+..+|||-|+..+......    ......+|.|+.+..-        .-+    ..-.-+.++||||++
T Consensus       472 ~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE  551 (1064)
T KOG1144|consen  472 NLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE  551 (1064)
T ss_pred             hcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence            345677999999999999999985543332    2233445555555321        000    112347899999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-------cccc-----------
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-------RQVK-----------  135 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-------~~~~-----------  135 (221)
                      .|..++......|+.+|+|+|+....-...+. .++.++.  .+.|+|+++||+|..-       ..+.           
T Consensus       552 sFtnlRsrgsslC~~aIlvvdImhGlepqtiE-Si~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~v~  628 (1064)
T KOG1144|consen  552 SFTNLRSRGSSLCDLAILVVDIMHGLEPQTIE-SINLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKDVQ  628 (1064)
T ss_pred             hhhhhhhccccccceEEEEeehhccCCcchhH-HHHHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhHHHH
Confidence            99999999999999999999998663322221 1222222  3899999999999521       1100           


Q ss_pred             HHH--------HHHHHh-c-------------CceEEEeecCCCCChHHHHHHHHHHH
Q 027593          136 AKQ--------VTFHRK-K-------------NLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       136 ~~~--------~~~~~~-~-------------~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .+.        .+++.. +             .+..+++||.+|+|+-+++.+|+...
T Consensus       629 ~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt  686 (1064)
T KOG1144|consen  629 NEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT  686 (1064)
T ss_pred             HHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence            000        011110 1             13568899999999999888887743

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.97  E-value=8.9e-09  Score=82.27  Aligned_cols=155  Identities=15%  Similarity=0.056  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      .|+..|+-.-|||||++.+.++... .+.....|+|.+..-......+..+.++|.||++++-.....-+...|.+++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5788999999999999996654442 223456677777766666666679999999999987766666677889999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-H---HHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-T---FHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~---~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      ++++..-.....  .-.+.......-.++|+||+|..+........ +   ......+++|.+|+.+|+|++++.+.|..
T Consensus        82 ~~deGl~~qtgE--hL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~  159 (447)
T COG3276          82 AADEGLMAQTGE--HLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID  159 (447)
T ss_pred             eCccCcchhhHH--HHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence            997653322221  11122222344558999999997643222211 1   11233567899999999999999999998


Q ss_pred             HH
Q 027593          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      ..
T Consensus       160 L~  161 (447)
T COG3276         160 LL  161 (447)
T ss_pred             hh
Confidence            65

>cd01900 YchF YchF subfamily

Probab=98.97  E-value=1.4e-09  Score=83.70  Aligned_cols=79  Identities=14%  Similarity=-0.018  Sum_probs=53.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------EEEEEEeCCCccccccc
Q 027593           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------IRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~D~~g~~~~~~~   78 (221)
                      |+++|.|+||||||+|++.....  .....+++|..+....+...+                 ..+.++|+||.......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999665443  344556666565544332211                 25899999996543221


Q ss_pred             c----cc---cccCccEEEEEEeCC
Q 027593           79 R----DG---YYIHGQCAIIMFDVT   96 (221)
Q Consensus        79 ~----~~---~~~~~~~~i~v~d~~   96 (221)
                      .    ..   .++.+|+++.|+|+.
T Consensus        79 ~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence            1    12   257899999999874

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.97  E-value=4.4e-09  Score=80.18  Aligned_cols=102  Identities=11%  Similarity=-0.004  Sum_probs=61.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHH
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT  140 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~  140 (221)
                      ++.+.++.|.|--.   .-......+|.++++.-..-....+-++.=+-       .+.-++|+||.|....+.......
T Consensus       143 G~DvIIVETVGvGQ---sev~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim-------EiaDi~vINKaD~~~A~~a~r~l~  212 (323)
T COG1703         143 GYDVIIVETVGVGQ---SEVDIANMADTFLVVMIPGAGDDLQGIKAGIM-------EIADIIVINKADRKGAEKAARELR  212 (323)
T ss_pred             CCCEEEEEecCCCc---chhHHhhhcceEEEEecCCCCcHHHHHHhhhh-------hhhheeeEeccChhhHHHHHHHHH
Confidence            35567777766211   11233556788888776655544433332222       344589999999766433322221


Q ss_pred             HHH----------hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          141 FHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       141 ~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      .+.          ....+.+.+|+..|+|++++++.|..-..
T Consensus       213 ~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~  254 (323)
T COG1703         213 SALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK  254 (323)
T ss_pred             HHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence            111          12357899999999999999998887543

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.97  E-value=5.8e-09  Score=82.06  Aligned_cols=51  Identities=18%  Similarity=0.182  Sum_probs=42.9

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++|..-  ...+++++|..+|++.++|||.++     +|..-+.....+++++..
T Consensus       131 P~~LSGGQr--QRVAlaRAlVr~P~v~L~DEPlSn-----LDa~lR~~mr~ei~~lh~  181 (338)
T COG3839         131 PLQLSGGQR--QRVALARALVRKPKVFLLDEPLSN-----LDAKLRVLMRSEIKKLHE  181 (338)
T ss_pred             cccCChhhH--HHHHHHHHHhcCCCEEEecCchhH-----hhHHHHHHHHHHHHHHHH
Confidence            456665554  458899999999999999999999     999999888888888654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.97  E-value=1.6e-08  Score=79.82  Aligned_cols=47  Identities=26%  Similarity=0.315  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-......|++++..+|+++++|||+.+     +|+..++...+.++++..+
T Consensus       141 ~G~~qrl~la~aL~~~P~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~  187 (306)
T PRK13537        141 GGMKRRLTLARALVNDPDVLVLDEPTTG-----LDPQARHLMWERLRSLLAR  187 (306)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence            3345557899999999999999999999     9999999999999988654

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.96  E-value=3.8e-09  Score=77.71  Aligned_cols=47  Identities=23%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..+
T Consensus       130 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  176 (190)
T TIGR01166       130 GGEKKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGREQMLAILRRLRAE  176 (190)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4455667899999999999999999999     9999999999999887543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd01858 NGP_1 NGP-1

Probab=98.95  E-value=2.8e-09  Score=75.98  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=41.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      ..++|+++|.+|+|||||+|+++. .......+..|+|.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRS-KKVCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhc-CCceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            468899999999999999999654 34455667778777665544322   377999998

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=1.2e-09  Score=86.46  Aligned_cols=131  Identities=20%  Similarity=0.198  Sum_probs=100.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCC------C--------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT--GEFE------K--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~--~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      -+|+++.+-.+||||.-.+++.  |...      .        ......|++..+..+.+++.++++.++||||+..|+-
T Consensus        38 rnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf~l  117 (753)
T KOG0464|consen   38 RNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDFRL  117 (753)
T ss_pred             hcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceEEE
Confidence            4789999999999999988653  2211      1        1123467888888889999999999999999999998


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL  147 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~  147 (221)
                      .....++-.|+++.|||++..--.+.+..|++.-.-   +.|.++++||+|................++.
T Consensus       118 everclrvldgavav~dasagve~qtltvwrqadk~---~ip~~~finkmdk~~anfe~avdsi~ekl~a  184 (753)
T KOG0464|consen  118 EVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKF---KIPAHCFINKMDKLAANFENAVDSIEEKLGA  184 (753)
T ss_pred             EHHHHHHHhcCeEEEEeccCCcccceeeeehhcccc---CCchhhhhhhhhhhhhhhhhHHHHHHHHhCC
Confidence            888889999999999999987666777788765322   7899999999998765544443344444444

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.94  E-value=1.8e-08  Score=80.52  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.......|++++..+|+++++|||+.+     +|+..+..+.+.++++..+
T Consensus       175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~~l~~~l~~l~~~  221 (340)
T PRK13536        175 GGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLAR  221 (340)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence            4445568899999999999999999999     9999999999999987554

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.94  E-value=3e-09  Score=76.67  Aligned_cols=56  Identities=18%  Similarity=0.199  Sum_probs=44.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      ..++|+++|.+|+|||||+|++. +.......+.+|+|.....+.++   ..+.++||||
T Consensus       116 ~~~~~~~vG~pnvGKSslin~l~-~~~~~~~~~~pg~T~~~~~~~~~---~~~~l~DtPG  171 (172)
T cd04178         116 TSITVGVVGFPNVGKSSLINSLK-RSRACNVGATPGVTKSMQEVHLD---KKVKLLDSPG  171 (172)
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHh-CcccceecCCCCeEcceEEEEeC---CCEEEEECcC
Confidence            34899999999999999999955 44455667788988887766653   3588999998

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=4.9e-08  Score=77.00  Aligned_cols=140  Identities=16%  Similarity=0.292  Sum_probs=81.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCc---------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------   75 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------   75 (221)
                      .|+++++|++|.|||||+|.|+.......         ...+.........+.-++..++++++||||--..        
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            59999999999999999999665533321         1113333344444444667789999999992211        


Q ss_pred             -----------------ccccccccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593           76 -----------------GGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        76 -----------------~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~  136 (221)
                                       ....+..+.  ..+++++++..+.. +...+.  +..+...+....+|.|+.|.|........
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~  177 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN  177 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence                             111111222  56788888876533 222222  22233344578888899999986433222


Q ss_pred             ----HHHHHHHhcCceEEEeecC
Q 027593          137 ----KQVTFHRKKNLQYYEISAK  155 (221)
Q Consensus       137 ----~~~~~~~~~~~~~~~~s~~  155 (221)
                          ...+.....++.+|.....
T Consensus       178 ~~K~~I~~~i~~~nI~vf~fp~~  200 (366)
T KOG2655|consen  178 QFKKRIRQDIEEHNIKVFDFPTD  200 (366)
T ss_pred             HHHHHHHHHHHHcCcceecCCCC
Confidence                1224445556665554444

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.94  E-value=3.9e-10  Score=81.08  Aligned_cols=49  Identities=18%  Similarity=0.232  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+....+|+++|..+|.+.++|||.++     +||-+..++...++.+..-.
T Consensus       141 SGGERRR~EIARaLa~~P~fiLLDEPFAG-----VDPiaV~dIq~iI~~L~~rg  189 (243)
T COG1137         141 SGGERRRVEIARALAANPKFILLDEPFAG-----VDPIAVIDIQRIIKHLKDRG  189 (243)
T ss_pred             ccchHHHHHHHHHHhcCCCEEEecCCccC-----CCchhHHHHHHHHHHHHhCC
Confidence            35567779999999999999999999999     99999999888888776543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.93  E-value=4.3e-09  Score=85.16  Aligned_cols=70  Identities=13%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             HHHHHHHHhcCce---EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          136 AKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       136 ~~~~~~~~~~~~~---~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      .+..+++..++++   .-.++..+  --.+.+.+|.++|..+++++++|||++.     +.|++..++...++++..+..
T Consensus       119 ~~i~~l~~~yGl~vdp~~~V~dLs--VG~qQRVEIlKaLyr~a~iLILDEPTaV-----LTP~E~~~lf~~l~~l~~~G~  191 (501)
T COG3845         119 ARIKELSERYGLPVDPDAKVADLS--VGEQQRVEILKALYRGARLLILDEPTAV-----LTPQEADELFEILRRLAAEGK  191 (501)
T ss_pred             HHHHHHHHHhCCCCCccceeecCC--cchhHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCCC
Confidence            3444666677664   23333333  1245568899999999999999999999     999999999999999887764

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.93  E-value=2.8e-09  Score=74.52  Aligned_cols=54  Identities=19%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      +++++|.+|+|||||+|+++.... .......|.+.+...+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKK-VSVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            899999999999999999765544 34556677777766666543   5799999995

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.92  E-value=5.9e-09  Score=82.19  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       127 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~  173 (302)
T TIGR01188       127 GGMRRRLDIAASLIHQPDVLFLDEPTTG-----LDPRTRRAIWDYIRALKEE  173 (302)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence            3445557899999999999999999999     9999999999999987644

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=2.1e-08  Score=73.80  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.-..+|++.++.+|++.++|||.++     +|..+.+...+.+..++.+.
T Consensus       147 GGEkKR~EilQ~~~lePkl~ILDE~DSG-----LDIdalk~V~~~i~~lr~~~  194 (251)
T COG0396         147 GGEKKRNEILQLLLLEPKLAILDEPDSG-----LDIDALKIVAEGINALREEG  194 (251)
T ss_pred             cchHHHHHHHHHHhcCCCEEEecCCCcC-----ccHHHHHHHHHHHHHHhcCC
Confidence            3455569999999999999999999999     99999999999999887764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.92  E-value=4.5e-09  Score=77.76  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=45.3

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ..+.|.++|.=.++  .+|+|++.-+|++.++|||+++     +||-....+.+.+++++..
T Consensus       140 ~~~PsELSGGM~KR--vaLARAialdPell~~DEPtsG-----LDPI~a~~~~~LI~~L~~~  194 (263)
T COG1127         140 DLYPSELSGGMRKR--VALARAIALDPELLFLDEPTSG-----LDPISAGVIDELIRELNDA  194 (263)
T ss_pred             hhCchhhcchHHHH--HHHHHHHhcCCCEEEecCCCCC-----CCcchHHHHHHHHHHHHHh
Confidence            33456666554444  8899999999999999999999     9999999999999887654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=4.9e-08  Score=76.92  Aligned_cols=82  Identities=20%  Similarity=0.094  Sum_probs=56.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-------------C-----eEEEEEEEeCCCccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-------------C-----GKIRFYCWDTAGQEK   74 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-----~~~~~~~~D~~g~~~   74 (221)
                      .++++|+|.|++|||||+|++....  ......+.+|..+....+.             .     ....+.++|++|.-.
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            3789999999999999999966544  3334455556555443221             1     235689999999654


Q ss_pred             c----ccccccc---ccCccEEEEEEeCC
Q 027593           75 F----GGLRDGY---YIHGQCAIIMFDVT   96 (221)
Q Consensus        75 ~----~~~~~~~---~~~~~~~i~v~d~~   96 (221)
                      .    +++-..|   ++.+|+++-|+++.
T Consensus        80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          80 GASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             CcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence            3    3333333   78899999999987

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.91  E-value=8.3e-09  Score=76.62  Aligned_cols=46  Identities=33%  Similarity=0.442  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          160 FEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       160 i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -++.+.-|+|+++.+|+++++|||..+     +|...+....+.+.+++..
T Consensus       175 Ge~rrvLiaRALv~~P~LLiLDEP~~G-----LDl~~re~ll~~l~~~~~~  220 (257)
T COG1119         175 GEQRRVLIARALVKDPELLILDEPAQG-----LDLIAREQLLNRLEELAAS  220 (257)
T ss_pred             hHHHHHHHHHHHhcCCCEEEecCcccc-----CChHHHHHHHHHHHHHhcC
Confidence            345567799999999999999999999     9999999999999988664

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.91  E-value=3.9e-08  Score=73.18  Aligned_cols=46  Identities=28%  Similarity=0.216  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|........+.+++...
T Consensus       132 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  177 (204)
T PRK13538        132 AGQQRRVALARLWLTRAPLWILDEPFTA-----IDKQGVARLEALLAQHAE  177 (204)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4445568899999999999999999999     999999999999988754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.90  E-value=4.8e-08  Score=74.35  Aligned_cols=45  Identities=22%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.++++.
T Consensus       135 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~  179 (236)
T TIGR03864       135 GGHRRRVEIARALLHRPALLLLDEPTVG-----LDPASRAAIVAHVRALC  179 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHH
Confidence            4455567899999999999999999999     99999999999998875

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.90  E-value=2.7e-08  Score=74.65  Aligned_cols=47  Identities=15%  Similarity=0.179  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..+
T Consensus       141 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  187 (216)
T TIGR00960       141 GGEQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSRDIMRLFEEFNRR  187 (216)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999887543

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.90  E-value=5.7e-08  Score=71.94  Aligned_cols=47  Identities=23%  Similarity=0.196  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|++.++|||+.+     +|....+...+.+++...+
T Consensus       130 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  176 (198)
T TIGR01189       130 AGQQRRLALARLWLSRAPLWILDEPTTA-----LDKAGVALLAGLLRAHLAR  176 (198)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence            4455668899999999999999999999     9999999999999887544

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.90  E-value=1.1e-08  Score=76.95  Aligned_cols=47  Identities=17%  Similarity=0.259  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       139 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~  185 (218)
T cd03266         139 TGMRQKVAIARALVHDPPVLLLDEPTTG-----LDVMATRALREFIRQLRAL  185 (218)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999887543

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.90  E-value=8.8e-09  Score=74.30  Aligned_cols=45  Identities=18%  Similarity=0.368  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +....|+++++.+|.++.+|||.++     +|....+.+.+.++++..+.
T Consensus       139 kqkV~iARAlvh~P~i~vlDEP~sG-----LDi~~~r~~~dfi~q~k~eg  183 (245)
T COG4555         139 KQKVAIARALVHDPSILVLDEPTSG-----LDIRTRRKFHDFIKQLKNEG  183 (245)
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCCCC-----ccHHHHHHHHHHHHHhhcCC
Confidence            3457899999999999999999999     99999999999999887754

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.89  E-value=2.8e-08  Score=74.24  Aligned_cols=46  Identities=13%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       131 ~G~~qrl~la~al~~~p~~lllDEP~~~-----LD~~~~~~~~~~l~~~~~  176 (210)
T cd03269         131 KGNQQKVQFIAAVIHDPELLILDEPFSG-----LDPVNVELLKDVIRELAR  176 (210)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            4455567899999999999999999999     999999999999988754

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.89  E-value=4.6e-08  Score=70.85  Aligned_cols=47  Identities=23%  Similarity=0.276  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|........+.++++..+
T Consensus        98 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~  144 (173)
T cd03230          98 GGMKQRLALAQALLHDPELLILDEPTSG-----LDPESRREFWELLRELKKE  144 (173)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence            4445668899999999999999999999     9999999999999987654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=4e-08  Score=72.60  Aligned_cols=153  Identities=15%  Similarity=0.186  Sum_probs=83.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCC---------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---cccc-
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK---------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR-   79 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~~-   79 (221)
                      .|+|+|+|.+|.|||||+|.+...+...         .+..+..+..-.+.+.-.+....+.++||||--..   ...| 
T Consensus        46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe  125 (336)
T KOG1547|consen   46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE  125 (336)
T ss_pred             ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence            6999999999999999999966544332         11122222223333334566678999999993221   1111 


Q ss_pred             ----------------------ccccc--CccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-
Q 027593           80 ----------------------DGYYI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-  133 (221)
Q Consensus        80 ----------------------~~~~~--~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-  133 (221)
                                            ...+.  .++++++++..+ ..+...+. ..+..+.+   ...++.|+-|.|...-. 
T Consensus       126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~pt-GhsLrplDieflkrLt~---vvNvvPVIakaDtlTleE  201 (336)
T KOG1547|consen  126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPT-GHSLRPLDIEFLKRLTE---VVNVVPVIAKADTLTLEE  201 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCC-CCccCcccHHHHHHHhh---hheeeeeEeecccccHHH
Confidence                                  11122  346666666655 33443332 23333333   56677788899964311 


Q ss_pred             ---ccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593          134 ---VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       134 ---~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                         ......+....+++.+++-.+.+...-+...+.-++
T Consensus       202 r~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR  240 (336)
T KOG1547|consen  202 RSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR  240 (336)
T ss_pred             HHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence               111222444566777766555544433333333333

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.89  E-value=1.6e-08  Score=73.91  Aligned_cols=46  Identities=24%  Similarity=0.317  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.++++..
T Consensus       107 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  152 (182)
T cd03215         107 GGNQQKVVLARWLARDPRVLILDEPTRG-----VDVGAKAEIYRLIRELAD  152 (182)
T ss_pred             HHHHHHHHHHHHHccCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999988754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=8.3e-09  Score=81.31  Aligned_cols=47  Identities=19%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+++     +|+.......+.++++..+
T Consensus       168 gGqkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~  214 (305)
T PRK13651        168 GGQKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVKEILEIFDNLNKQ  214 (305)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999887643

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.89  E-value=8.5e-09  Score=81.77  Aligned_cols=48  Identities=17%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+.+.....|++++..+|+++++|||+.+     +|+...+...+.+.++..+
T Consensus       178 SgGqkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~~l~~~L~~l~~~  225 (320)
T PRK13631        178 SGGQKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEHEMMQLILDAKAN  225 (320)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHC
Confidence            35566778999999999999999999999     9999999999999887543

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.89  E-value=4.3e-08  Score=77.38  Aligned_cols=47  Identities=28%  Similarity=0.309  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       138 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~  184 (303)
T TIGR01288       138 GGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLAR  184 (303)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhC
Confidence            4455667899999999999999999999     9999999999999987554

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.89  E-value=3.4e-09  Score=91.52  Aligned_cols=46  Identities=20%  Similarity=0.230  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++..-.|+|++..+|+++++|||+++     +|.+..+...+.+.+...
T Consensus       612 GGQrQrlalARaLl~~P~ILlLDEaTSa-----LD~~sE~~I~~~L~~~~~  657 (709)
T COG2274         612 GGQRQRLALARALLSKPKILLLDEATSA-----LDPETEAIILQNLLQILQ  657 (709)
T ss_pred             HHHHHHHHHHHHhccCCCEEEEeCcccc-----cCHhHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     999999999999988763

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.88  E-value=4.9e-08  Score=74.10  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..+
T Consensus       136 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  182 (232)
T cd03218         136 GGERRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQDIQKIIKILKDR  182 (232)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            4456667899999999999999999999     9999999999999887543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.88  E-value=4.3e-08  Score=74.58  Aligned_cols=46  Identities=26%  Similarity=0.257  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       139 gG~~qrv~ia~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  184 (235)
T cd03261         139 GGMKKRVALARALALDPELLLYDEPTAG-----LDPIASGVIDDLIRSLKK  184 (235)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.88  E-value=1.4e-08  Score=76.41  Aligned_cols=97  Identities=10%  Similarity=0.071  Sum_probs=56.2

Q ss_pred             EEEEEEeCCC--cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH
Q 027593           62 IRFYCWDTAG--QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  139 (221)
Q Consensus        62 ~~~~~~D~~g--~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~  139 (221)
                      ..+.++.|.|  |.+     .....-+|.+++|....-....+.++.=+-+       .+-++|+||+|...........
T Consensus       122 ~D~IiiETVGvGQsE-----~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE-------iaDi~vVNKaD~~gA~~~~~~l  189 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE-----VDIADMADTVVLVLVPGLGDEIQAIKAGIME-------IADIFVVNKADRPGADRTVRDL  189 (266)
T ss_dssp             -SEEEEEEESSSTHH-----HHHHTTSSEEEEEEESSTCCCCCTB-TTHHH-------H-SEEEEE--SHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCccH-----HHHHHhcCeEEEEecCCCccHHHHHhhhhhh-------hccEEEEeCCChHHHHHHHHHH
Confidence            4456666655  222     2234567898898887766555544432222       2458999999965433222222


Q ss_pred             H----HHHh----cCceEEEeecCCCCChHHHHHHHHHH
Q 027593          140 T----FHRK----KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       140 ~----~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      .    +...    ..-+++.+||.++.|+++++..|.+.
T Consensus       190 ~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  190 RSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            1    1111    12489999999999999999888774

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.88  E-value=2.4e-08  Score=74.80  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       133 gG~~qrl~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~  178 (213)
T cd03259         133 GGQQQRVALARALAREPSLLLLDEPLSA-----LDAKLREELREELKELQR  178 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455567799999999999999999999     999999999999988754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.88  E-value=3.4e-08  Score=73.57  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       137 ~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  182 (206)
T TIGR03608       137 GGEQQRVALARAILKDPPLILADEPTGS-----LDPKNRDEVLDLLLELND  182 (206)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHHHHHHHHHHHHh
Confidence            4455667899999999999999999999     999999999999988754

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.88  E-value=1.2e-08  Score=76.30  Aligned_cols=47  Identities=21%  Similarity=0.292  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       137 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  183 (211)
T cd03225         137 GGQKQRVAIAGVLAMDPDILLLDEPTAG-----LDPAGRRELLELLKKLKAE  183 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4445567899999999999999999999     9999999999999887543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.88  E-value=4.2e-09  Score=73.38  Aligned_cols=49  Identities=18%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      |.++...+|+++++.+|++++.|||++.     +|++-..+....++++..-++
T Consensus       144 ggqqqrvaiaralmmkpqvllfdeptaa-----ldpeitaqvv~iikel~~tgi  192 (242)
T COG4161         144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIKELAETGI  192 (242)
T ss_pred             cchhhhHHHHHHHhcCCcEEeecCcccc-----cCHHHHHHHHHHHHHHHhcCc
Confidence            4456668999999999999999999999     999999999999999877654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.88  E-value=2.3e-08  Score=80.30  Aligned_cols=46  Identities=24%  Similarity=0.348  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||.++     +|...+.+..+.++++..
T Consensus       137 gGq~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~  182 (353)
T TIGR03265       137 GGQQQRVALARALATSPGLLLLDEPLSA-----LDARVREHLRTEIRQLQR  182 (353)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            5566678999999999999999999999     999999999999988754

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.88  E-value=7e-08  Score=71.83  Aligned_cols=47  Identities=19%  Similarity=0.221  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       129 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  175 (205)
T cd03226         129 GGQKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNMERVGELIRELAAQ  175 (205)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999887543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.87  E-value=5.2e-08  Score=73.01  Aligned_cols=47  Identities=17%  Similarity=0.209  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..+
T Consensus       140 ~G~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  186 (214)
T TIGR02673       140 GGEQQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSERILDLLKRLNKR  186 (214)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4456668899999999999999999999     9999999999999887543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.87  E-value=1.8e-08  Score=78.80  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+....+..+.++++..
T Consensus       147 gGq~qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~~l~~~l~~l~~  192 (287)
T PRK13637        147 GGQKRRVAIAGVVAMEPKILILDEPTAG-----LDPKGRDEILNKIKELHK  192 (287)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     999999999999988754

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.87  E-value=4.5e-08  Score=68.68  Aligned_cols=42  Identities=33%  Similarity=0.430  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      +.....|++++..+|+++++|||..+     +|........+.++++
T Consensus        75 ~~~rv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~  116 (144)
T cd03221          75 EKMRLALAKLLLENPNLLLLDEPTNH-----LDLESIEALEEALKEY  116 (144)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHc
Confidence            44557799999999999999999999     9999999999988876

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.87  E-value=5.7e-08  Score=73.13  Aligned_cols=46  Identities=22%  Similarity=0.238  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.++++..
T Consensus       136 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  181 (220)
T cd03263         136 GGMKRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRRAIWDLILEVRK  181 (220)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHhc
Confidence            4455668899999999999999999999     999999999999988754

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.87  E-value=6.7e-08  Score=71.71  Aligned_cols=47  Identities=21%  Similarity=0.270  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....+++++..+|+++++|||+.+     +|+...+...+.+++...+
T Consensus       128 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  174 (201)
T cd03231         128 AGQQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVARFAEAMAGHCAR  174 (201)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999876543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.87  E-value=2.9e-08  Score=74.75  Aligned_cols=46  Identities=17%  Similarity=0.271  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       134 ~G~~qr~~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  179 (220)
T cd03265         134 GGMRRRLEIARSLVHRPEVLFLDEPTIG-----LDPQTRAHVWEYIEKLKE  179 (220)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999999     999999999999988754

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.87  E-value=4.8e-08  Score=73.07  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       133 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  178 (211)
T cd03264         133 GGMRRRVGIAQALVGDPSILIVDEPTAG-----LDPEERIRFRNLLSELGE  178 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     999999999999988754

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.87  E-value=1.7e-08  Score=72.33  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....+++++..+|+++++|||..+     +|....+...+.++++..
T Consensus        85 ~G~~qrl~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~  130 (163)
T cd03216          85 VGERQMVEIARALARNARLLILDEPTAA-----LTPAEVERLFKVIRRLRA  130 (163)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            3445557899999999999999999999     999999999999988754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.86  E-value=8.7e-08  Score=73.88  Aligned_cols=47  Identities=19%  Similarity=0.232  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       155 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~l~~~  201 (257)
T PRK10619        155 GGQQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVGEVLRIMQQLAEE  201 (257)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     9999999999999887543

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.86  E-value=4.9e-08  Score=70.14  Aligned_cols=53  Identities=9%  Similarity=0.049  Sum_probs=37.2

Q ss_pred             CEEEEEeCCCCCccc-ccHHHH---HHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          119 PIVLCGNKVDVKNRQ-VKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       119 p~i~v~nk~D~~~~~-~~~~~~---~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .-++|+||.|+...- ...+..   ...-....+++++|.++|.|+++++.++....
T Consensus       144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            347999999996532 212221   22234578999999999999999988877643

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.86  E-value=2.6e-08  Score=80.18  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-++....|++++..+|+++++|||.++     +|.....++.+.++++..+
T Consensus       140 gGq~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  186 (362)
T TIGR03258       140 GGMQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIRANMREEIAALHEE  186 (362)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHh
Confidence            4456668899999999999999999999     9999999999999887654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.86  E-value=2.4e-08  Score=76.31  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       118 gGe~qrv~iaraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  163 (246)
T cd03237         118 GGELQRVAIAACLSKDADIYLLDEPSAY-----LDVEQRLMASKVIRRFAE  163 (246)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4445668899999999999999999999     999999999999988753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.85  E-value=5.3e-08  Score=72.96  Aligned_cols=47  Identities=15%  Similarity=0.183  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       139 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  185 (214)
T cd03292         139 GGEQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTWEIMNLLKKINKA  185 (214)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHc
Confidence            4456668899999999999999999999     9999999999999887543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=2.4e-08  Score=77.57  Aligned_cols=47  Identities=19%  Similarity=0.191  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|........+.++++..+
T Consensus       139 gG~~qrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  185 (271)
T PRK13638        139 HGQKKRVAIAGALVLQARYLLLDEPTAG-----LDPAGRTQMIAIIRRIVAQ  185 (271)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            3445557899999999999999999999     9999999999999887543

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=3.3e-08  Score=79.27  Aligned_cols=46  Identities=15%  Similarity=0.228  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||.++     +|...+.+....++++..
T Consensus       139 gGq~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  184 (351)
T PRK11432        139 GGQQQRVALARALILKPKVLLFDEPLSN-----LDANLRRSMREKIRELQQ  184 (351)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668999999999999999999999     999999999999988754

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.85  E-value=2.5e-08  Score=80.23  Aligned_cols=46  Identities=13%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-+.....|++++..+|+++++|||.++     +|...+..+.+.++++..
T Consensus       137 gGq~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~  182 (356)
T PRK11650        137 GGQRQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRVQMRLEIQRLHR  182 (356)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999988754

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.85  E-value=1e-07  Score=71.42  Aligned_cols=46  Identities=20%  Similarity=0.321  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       133 ~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  178 (213)
T cd03301         133 GGQRQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRVQMRAELKRLQQ  178 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999988754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.85  E-value=1.1e-07  Score=71.82  Aligned_cols=47  Identities=21%  Similarity=0.178  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++..+
T Consensus       127 ~G~~~rv~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~L~~~~~~  173 (223)
T TIGR03740       127 LGMKQRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQELRELIRSFPEQ  173 (223)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence            4445567899999999999999999999     9999999999999887543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.84  E-value=6.9e-08  Score=72.03  Aligned_cols=47  Identities=21%  Similarity=0.240  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       129 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  175 (208)
T cd03268         129 LGMKQRLGIALALLGNPDLLILDEPTNG-----LDPDGIKELRELILSLRDQ  175 (208)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            3445567899999999999999999999     9999999999999887543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.84  E-value=8.8e-08  Score=73.52  Aligned_cols=47  Identities=19%  Similarity=0.224  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..+
T Consensus       147 ~Gq~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  193 (250)
T PRK11264        147 GGQQQRVAIARALAMRPEVILFDEPTSA-----LDPELVGEVLNTIRQLAQE  193 (250)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhc
Confidence            3445557799999999999999999999     9999999999999887543

>PRK10908 cell division protein FtsE; Provisional

Probab=98.84  E-value=7.9e-08  Score=72.47  Aligned_cols=46  Identities=15%  Similarity=0.140  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  185 (222)
T PRK10908        140 GGEQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSEGILRLFEEFNR  185 (222)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.84  E-value=8.4e-08  Score=71.24  Aligned_cols=46  Identities=11%  Similarity=0.083  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++..
T Consensus       121 ~Ge~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~  166 (202)
T cd03233         121 GGERKRVSIAEALVSRASVLCWDNSTRG-----LDSSTALEILKCIRTMAD  166 (202)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999999     999999999999998754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.84  E-value=1.1e-07  Score=72.26  Aligned_cols=46  Identities=20%  Similarity=0.287  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       156 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  201 (236)
T cd03267         156 LGQRMRAEIAAALLHEPEILFLDEPTIG-----LDVVAQENIRNFLKEYNR  201 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHh
Confidence            3445557799999999999999999999     999999999999998754

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.84  E-value=5.1e-08  Score=73.27  Aligned_cols=46  Identities=20%  Similarity=0.266  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+.+.+.++++..
T Consensus       143 ~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~  188 (218)
T cd03255         143 GGQQQRVAIARALANDPKIILADEPTGN-----LDSETGKEVMELLRELNK  188 (218)
T ss_pred             HHHHHHHHHHHHHccCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     999999999999998754

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.84  E-value=3e-08  Score=80.14  Aligned_cols=47  Identities=19%  Similarity=0.304  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.+.....|++++..+|+++++|||.++     +|...+..+...++++..+
T Consensus       147 gGq~QRVaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~  193 (375)
T PRK09452        147 GGQQQRVAIARAVVNKPKVLLLDESLSA-----LDYKLRKQMQNELKALQRK  193 (375)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHh
Confidence            4456668899999999999999999999     9999999999999887553

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.83  E-value=4.8e-09  Score=74.38  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=43.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |.++...+|++++...|.+.+.|||++.     +|++-..+.+..+++++++.
T Consensus       155 GGQQQR~aIARaLameP~vmLFDEPTSA-----LDPElVgEVLkv~~~LAeEg  202 (256)
T COG4598         155 GGQQQRVAIARALAMEPEVMLFDEPTSA-----LDPELVGEVLKVMQDLAEEG  202 (256)
T ss_pred             chHHHHHHHHHHHhcCCceEeecCCccc-----CCHHHHHHHHHHHHHHHHhC
Confidence            4456668999999999999999999999     99999999999999988764

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=6.4e-08  Score=77.58  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       143 gGq~qRv~lAraL~~~p~iLlLDEPts~-----LD~~~~~~l~~~L~~l~~  188 (343)
T PRK11153        143 GGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINR  188 (343)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     999999999999998754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.83  E-value=6.5e-08  Score=73.47  Aligned_cols=46  Identities=24%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+.......+.++++..
T Consensus       143 ~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~  188 (233)
T cd03258         143 GGQKQRVGIARALANNPKVLLCDEATSA-----LDPETTQSILALLRDINR  188 (233)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.83  E-value=4.2e-08  Score=71.36  Aligned_cols=47  Identities=28%  Similarity=0.374  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||..+     +|........+.++++..+
T Consensus       103 ~G~~qr~~la~al~~~p~llilDEP~~~-----LD~~~~~~l~~~l~~~~~~  149 (178)
T cd03229         103 GGQQQRVALARALAMDPDVLLLDEPTSA-----LDPITRREVRALLKSLQAQ  149 (178)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            3445567899999999999999999999     9999999999999887654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.83  E-value=7.6e-08  Score=75.86  Aligned_cols=51  Identities=18%  Similarity=0.212  Sum_probs=42.2

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +...++.  +.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       131 ~~~LS~G--~~qrv~la~al~~~p~lliLDEPt~g-----LD~~~~~~l~~~l~~~~~  181 (301)
T TIGR03522       131 IGQLSKG--YRQRVGLAQALIHDPKVLILDEPTTG-----LDPNQLVEIRNVIKNIGK  181 (301)
T ss_pred             hhhCCHH--HHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHhcC
Confidence            3444444  45557899999999999999999999     999999999999988753

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.83  E-value=1.1e-07  Score=71.21  Aligned_cols=47  Identities=21%  Similarity=0.181  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.++++..+
T Consensus       140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  186 (214)
T PRK13543        140 AGQKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGITLVNRMISAHLRG  186 (214)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999876544

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=2.2e-08  Score=77.81  Aligned_cols=47  Identities=23%  Similarity=0.211  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+....+..+.++++..+
T Consensus       141 gG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  187 (274)
T PRK13647        141 YGQKKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQETLMEILDRLHNQ  187 (274)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999987643

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.83  E-value=3.7e-08  Score=79.74  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.++....|++++..+|+++++|||.++     +|...+..+.+.++++..
T Consensus       152 gGq~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  197 (377)
T PRK11607        152 GGQRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLRDRMQLEVVDILE  197 (377)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            5556678999999999999999999999     999999998888876643

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.83  E-value=3.1e-07  Score=72.13  Aligned_cols=137  Identities=18%  Similarity=0.307  Sum_probs=80.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL   78 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---~~~   78 (221)
                      ..++|+++|++|+|||||+|.|+.......          ..++..+......+.-++..+.+.++||||--.+   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            469999999999999999999776533222          1233333444444455667789999999992221   111


Q ss_pred             c-----------ccc------------c--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           79 R-----------DGY------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        79 ~-----------~~~------------~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      |           ..|            +  ...+++++++..+.. +...+.  +..+...+...-+|.|+.|.|.-...
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~  178 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD  178 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence            1           011            1  145788888775532 333222  22333444567788899999975422


Q ss_pred             ccH----HHHHHHHhcCceEEE
Q 027593          134 VKA----KQVTFHRKKNLQYYE  151 (221)
Q Consensus       134 ~~~----~~~~~~~~~~~~~~~  151 (221)
                      ...    ...+....+++++|.
T Consensus       179 El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         179 ELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHhCCceeC
Confidence            221    122445566777665

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.82  E-value=1.4e-08  Score=78.41  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=38.0

Q ss_pred             CCCEEEEEeCCCCCccc--ccHHHHHHHHh--cCceEEEeecCCCCChHHHHHHHHHH
Q 027593          117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       117 ~~p~i~v~nk~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ..+.++++||+|+....  ......+....  ...+++.+|+++|.|++.+..+|...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45679999999996521  11122222222  36789999999999999999988763

>cd01855 YqeH YqeH

Probab=98.82  E-value=8.2e-09  Score=75.93  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=43.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCC-------CcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      ..+++++|.+|+|||||+|+++.....       ......+|+|.....+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            468999999999999999997754321       23455678888887777653   579999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=2.9e-08  Score=77.70  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.....+.+.++++..+
T Consensus       147 gGqkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~~~l~~~l~~l~~~  193 (288)
T PRK13643        147 GGQMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKARIEMMQLFESIHQS  193 (288)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999887543

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.82  E-value=3e-08  Score=74.24  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       135 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  181 (213)
T cd03235         135 GGQQQRVLLARALVQDPDLLLLDEPFAG-----VDPKTQEDIYELLRELRRE  181 (213)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            4445567899999999999999999999     9999999999999987543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.82  E-value=6.6e-08  Score=72.83  Aligned_cols=46  Identities=17%  Similarity=0.187  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       144 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~  189 (221)
T TIGR02211       144 GGERQRVAIARALVNQPSLVLADEPTGN-----LDNNNAKIIFDLMLELNR  189 (221)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999988753

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.82  E-value=1.4e-08  Score=82.64  Aligned_cols=47  Identities=19%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-++....|++++..+|+++++|||+.+     +|+..+.+..+.++++..+
T Consensus       142 gGerQRv~IArAL~~~P~iLLLDEPtsg-----LD~~~~~~l~~lL~~l~~~  188 (402)
T PRK09536        142 GGERQRVLLARALAQATPVLLLDEPTAS-----LDINHQVRTLELVRRLVDD  188 (402)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            4556668899999999999999999999     9999999999999988643

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.82  E-value=4.1e-08  Score=79.42  Aligned_cols=46  Identities=17%  Similarity=0.332  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-++....|++++..+|+++++|||.++     +|....+...+.++++..
T Consensus       136 gGq~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~~~l~~~L~~l~~  181 (369)
T PRK11000        136 GGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK  181 (369)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999888754

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=1e-07  Score=72.34  Aligned_cols=46  Identities=20%  Similarity=0.236  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       148 gG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~  193 (233)
T PRK11629        148 GGERQRVAIARALVNNPRLVLADEPTGN-----LDARNADSIFQLLGELNR  193 (233)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988753

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=4e-08  Score=76.56  Aligned_cols=46  Identities=17%  Similarity=0.192  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       140 ~Gq~qrl~laraL~~~p~llilDEPt~g-----LD~~~~~~l~~~l~~l~~  185 (277)
T PRK13652        140 GGEKKRVAIAGVIAMEPQVLVLDEPTAG-----LDPQGVKELIDFLNDLPE  185 (277)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.81  E-value=3.2e-08  Score=77.47  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+.......+.++++..+
T Consensus       148 gGq~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~~~l~~~l~~l~~~  194 (287)
T PRK13641        148 GGQMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGRKEMMQLFKDYQKA  194 (287)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999887543

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.81  E-value=9.4e-08  Score=71.56  Aligned_cols=47  Identities=19%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++...
T Consensus       138 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~  184 (213)
T cd03262         138 GGQQQRVAIARALAMNPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEE  184 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHc
Confidence            4455567899999999999999999999     9999999999999987543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd01856 YlqF YlqF

Probab=98.81  E-value=1.9e-08  Score=72.75  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=44.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      ...++++++|.+|+|||||+|+++...+. ......++|.....+.+.   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34589999999999999999997765543 445666777777666554   45789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.81  E-value=2e-08  Score=73.21  Aligned_cols=46  Identities=28%  Similarity=0.356  Sum_probs=39.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       100 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~~~~~l~~~~~  145 (180)
T cd03214         100 GGERQRVLLARALAQEPPILLLDEPTSH-----LDIAHQIELLELLRRLAR  145 (180)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            3345557799999999999999999999     999999999999988754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.81  E-value=3.8e-08  Score=78.65  Aligned_cols=52  Identities=25%  Similarity=0.238  Sum_probs=43.8

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+..+|.  +.....|++++..+|+++++|||+++     +|+.....+.+.++++..+
T Consensus       138 ~~~LSgG--qkQRV~IARAL~~~P~iLLlDEPts~-----LD~~t~~~i~~lL~~l~~~  189 (343)
T TIGR02314       138 PSNLSGG--QKQRVAIARALASNPKVLLCDEATSA-----LDPATTQSILELLKEINRR  189 (343)
T ss_pred             hhhCCHH--HHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            3445544  45558899999999999999999999     9999999999999988653

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.80  E-value=1.6e-07  Score=75.63  Aligned_cols=47  Identities=21%  Similarity=0.251  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||..+     +|+...+...+.++++..+
T Consensus       134 gGqkqRvalAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~l~~~  180 (354)
T TIGR02142       134 GGEKQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKYEILPYLERLHAE  180 (354)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence            4556668899999999999999999999     9999999999999987543

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.80  E-value=8.9e-08  Score=72.87  Aligned_cols=46  Identities=22%  Similarity=0.304  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       146 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  191 (236)
T cd03219         146 YGQQRRLEIARALATDPKLLLLDEPAAG-----LNPEETEELAELIRELRE  191 (236)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999988754

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.80  E-value=8.7e-08  Score=73.77  Aligned_cols=45  Identities=22%  Similarity=0.247  Sum_probs=39.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.....+.+.++++.
T Consensus       136 gGqkqrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~  180 (257)
T PRK11247        136 GGQKQRVALARALIHRPGLLLLDEPLGA-----LDALTRIEMQDLIESLW  180 (257)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     99999999999998764

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.80  E-value=1.3e-07  Score=70.95  Aligned_cols=46  Identities=35%  Similarity=0.365  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       134 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  179 (214)
T cd03297         134 GGEKQRVALARALAAQPELLLLDEPFSA-----LDRALRLQLLPELKQIKK  179 (214)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            3455667899999999999999999999     999999999999988754

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=1.5e-07  Score=72.43  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=39.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++.
T Consensus       131 gGq~qrl~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~  175 (255)
T PRK11248        131 GGQRQRVGIARALAANPQLLLLDEPFGA-----LDAFTREQMQTLLLKLW  175 (255)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHH
Confidence            4445567799999999999999999999     99999999999998873

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.79  E-value=6.1e-08  Score=74.96  Aligned_cols=46  Identities=24%  Similarity=0.250  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.......|+-++..+|++++.|||+..     +|...+.++++.++++..
T Consensus       156 GGMrQRV~IAmala~~P~LlIADEPTTA-----LDvt~QaqIl~Ll~~l~~  201 (316)
T COG0444         156 GGMRQRVMIAMALALNPKLLIADEPTTA-----LDVTVQAQILDLLKELQR  201 (316)
T ss_pred             CcHHHHHHHHHHHhCCCCEEEeCCCcch-----hhHHHHHHHHHHHHHHHH
Confidence            4445557799999999999999999999     999999999999999876

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=1.5e-08  Score=79.23  Aligned_cols=46  Identities=15%  Similarity=0.216  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+.......+.++++..
T Consensus       148 gGq~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~l~~  193 (286)
T PRK13646        148 GGQMRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKRQVMRLLKSLQT  193 (286)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999998753

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.79  E-value=3.5e-08  Score=71.43  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..+
T Consensus        99 ~G~~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~~  145 (173)
T cd03246          99 GGQRQRLGLARALYGNPRILVLDEPNSH-----LDVEGERALNQAIAALKAA  145 (173)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHHHHHHHHHHHHhC
Confidence            3445668899999999999999999999     9999999999999887543

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.79  E-value=1.6e-07  Score=69.71  Aligned_cols=46  Identities=15%  Similarity=0.175  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++..
T Consensus       130 ~G~~~rv~laral~~~p~~lilDEP~~~-----LD~~~~~~l~~~l~~~~~  175 (200)
T PRK13540        130 SGQKRQVALLRLWMSKAKLWLLDEPLVA-----LDELSLLTIITKIQEHRA  175 (200)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence            4445668899999999999999999999     999999999999998643

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.79  E-value=1.2e-07  Score=72.39  Aligned_cols=46  Identities=26%  Similarity=0.326  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       138 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~  183 (242)
T cd03295         138 GGQQQRVGVARALAADPPLLLMDEPFGA-----LDPITRDQLQEEFKRLQQ  183 (242)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988753

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.79  E-value=1e-07  Score=72.81  Aligned_cols=47  Identities=17%  Similarity=0.246  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..+
T Consensus       140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  186 (241)
T PRK10895        140 GGERRRVEIARALAANPKFILLDEPFAG-----VDPISVIDIKRIIEHLRDS  186 (241)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            4445567899999999999999999999     9999999998888876543

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.79  E-value=3.6e-08  Score=69.20  Aligned_cols=45  Identities=20%  Similarity=0.192  Sum_probs=38.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      |.+....+|++.+.-.|.++++|||++.     +|+.+.+.+.+.+-..-
T Consensus       136 GGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~nkr~ie~mi~~~v  180 (223)
T COG4619         136 GGEKQRIALIRNLQFMPKILLLDEITSA-----LDESNKRNIEEMIHRYV  180 (223)
T ss_pred             chHHHHHHHHHHhhcCCceEEecCchhh-----cChhhHHHHHHHHHHHh
Confidence            5556668899999999999999999999     99999998888887653

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.79  E-value=2.5e-08  Score=75.46  Aligned_cols=46  Identities=26%  Similarity=0.307  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       148 ~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~  193 (228)
T cd03257         148 GGQRQRVAIARALALNPKLLIADEPTSA-----LDVSVQAQILDLLKKLQE  193 (228)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.79  E-value=5.4e-08  Score=78.27  Aligned_cols=46  Identities=22%  Similarity=0.272  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-++....|++++..+|+++++|||.++     +|+...+.+.+.+.++..
T Consensus       132 GGq~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186       132 GGMQQRVGLARALAAEPDILLMDEAFSA-----LDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999988754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.78  E-value=7.5e-08  Score=80.73  Aligned_cols=61  Identities=21%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             HHhcCceE--EEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          142 HRKKNLQY--YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       142 ~~~~~~~~--~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ...++++-  -.++..+  |..+....|++++...|.++++|||+.+     +|.+...+++..+++...
T Consensus       139 L~gLg~~~~~~~~~~LS--GG~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i~WLe~~L~~~~g  201 (530)
T COG0488         139 LLGLGFPDEDRPVSSLS--GGWRRRVALARALLEEPDLLLLDEPTNH-----LDLESIEWLEDYLKRYPG  201 (530)
T ss_pred             HhcCCCCcccCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHHHHHHHHHHhCCC
Confidence            33444443  3444444  5567779999999999999999999999     999999999999986543

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=3e-08  Score=77.73  Aligned_cols=46  Identities=13%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       148 gGq~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~~l~~~L~~l~~  193 (290)
T PRK13634        148 GGQMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRKEMMEMFYKLHK  193 (290)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=3.7e-08  Score=76.96  Aligned_cols=46  Identities=15%  Similarity=0.148  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+.......+.++++..
T Consensus       144 ~G~~qrl~laraL~~~p~lLilDEPt~g-----LD~~~~~~l~~~l~~l~~  189 (283)
T PRK13636        144 FGQKKRVAIAGVLVMEPKVLVLDEPTAG-----LDPMGVSEIMKLLVEMQK  189 (283)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            4455568899999999999999999999     999999999999988754

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.78  E-value=3e-08  Score=77.57  Aligned_cols=59  Identities=20%  Similarity=0.124  Sum_probs=45.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ...++|+++|.+|+|||||+|++.. .......+.+|+|.....+..+.   .+.++||||..
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~  177 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAG-KKIAKTGNRPGVTKAQQWIKLGK---GLELLDTPGIL  177 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhc-CCccccCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence            4568999999999999999999654 44445567888888876655542   47899999974

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.78  E-value=1.2e-08  Score=86.54  Aligned_cols=45  Identities=27%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      |.+..+-.|+|++.++|+++++|||++.     +|.+..+...+.+.+..
T Consensus       473 GGQrQRiaiARall~~~~iliLDE~TSa-----LD~~te~~I~~~l~~~~  517 (529)
T TIGR02868       473 GGERQRLALARALLADAPILLLDEPTEH-----LDAGTESELLEDLLAAL  517 (529)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhc
Confidence            4466678899999999999999999999     99999999999998764

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.78  E-value=2.3e-08  Score=75.62  Aligned_cols=47  Identities=26%  Similarity=0.378  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       144 gG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  190 (227)
T cd03260         144 GGQQQRLCLARALANEPEVLLLDEPTSA-----LDPISTAKIEELIAELKKE  190 (227)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHhhC
Confidence            4445568899999999999999999999     9999999999999987554

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.78  E-value=1.1e-07  Score=76.96  Aligned_cols=46  Identities=24%  Similarity=0.247  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-++....|++++..+|+++++|||.++     +|+....++.+.+.++..
T Consensus       167 gGq~QRV~LARALa~~P~ILLlDEPts~-----LD~~~r~~l~~~L~~l~~  212 (382)
T TIGR03415       167 GGMQQRVGLARAFAMDADILLMDEPFSA-----LDPLIRTQLQDELLELQA  212 (382)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.78  E-value=5.6e-08  Score=73.27  Aligned_cols=46  Identities=17%  Similarity=0.260  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|........+.++++..
T Consensus       135 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  180 (222)
T cd03224         135 GGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIRELRD  180 (222)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            3445567899999999999999999999     999999999999988754

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.77  E-value=6.9e-08  Score=69.86  Aligned_cols=45  Identities=16%  Similarity=0.140  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHhCC--CCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          160 FEKPFLYLARKLAGD--PNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       160 i~~~~~~l~~~l~~~--~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+.....|++++..+  |+++++|||..+     +|....+.+.+.++++..
T Consensus        91 Gq~qrl~laral~~~~~p~llLlDEPt~~-----LD~~~~~~l~~~l~~~~~  137 (176)
T cd03238          91 GELQRVKLASELFSEPPGTLFILDEPSTG-----LHQQDINQLLEVIKGLID  137 (176)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHh
Confidence            345567799999999  999999999999     999999999999988753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.77  E-value=4.3e-07  Score=67.76  Aligned_cols=88  Identities=9%  Similarity=0.039  Sum_probs=65.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-------cccccccC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-------~~~~~~~~   85 (221)
                      ..+|+++|-|.+|||||+..+..  ..........+|...+...+..++..+++.|.||.....+       ..-...+.
T Consensus        62 daRValIGfPSVGKStlLs~iT~--T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArt  139 (364)
T KOG1486|consen   62 DARVALIGFPSVGKSTLLSKITS--THSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVART  139 (364)
T ss_pred             CeEEEEecCCCccHHHHHHHhhc--chhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeec
Confidence            57999999999999999998543  2233445566777777777777888999999999554322       23344678


Q ss_pred             ccEEEEEEeCCChhhhc
Q 027593           86 GQCAIIMFDVTARLTYK  102 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~  102 (221)
                      +|.+++|.|++-.+...
T Consensus       140 aDlilMvLDatk~e~qr  156 (364)
T KOG1486|consen  140 ADLILMVLDATKSEDQR  156 (364)
T ss_pred             ccEEEEEecCCcchhHH
Confidence            89999999998765543

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.77  E-value=1.8e-07  Score=72.55  Aligned_cols=46  Identities=20%  Similarity=0.130  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       146 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~  191 (269)
T PRK11831        146 GGMARRAALARAIALEPDLIMFDEPFVG-----QDPITMGVLVKLISELNS  191 (269)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     999999999999988754

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.77  E-value=6.5e-08  Score=74.44  Aligned_cols=46  Identities=15%  Similarity=0.136  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       143 ~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~L~~~~~  188 (254)
T PRK10418        143 GGMLQRMMIALALLCEAPFIIADEPTTD-----LDVVAQARILDLLESIVQ  188 (254)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     999999999999988643

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.77  E-value=1.1e-07  Score=70.96  Aligned_cols=47  Identities=26%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++..+
T Consensus       130 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  176 (207)
T PRK13539        130 AGQKRRVALARLLVSNRPIWILDEPTAA-----LDAAAVALFAELIRAHLAQ  176 (207)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            4455668899999999999999999999     9999999999999886544

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=1.2e-07  Score=75.57  Aligned_cols=46  Identities=22%  Similarity=0.216  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-+.....|++++..+|+++++|||+.+     +|...+.+..+.++++..
T Consensus       156 gGq~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~il~lL~~l~~  201 (326)
T PRK11022        156 GGMSQRVMIAMAIACRPKLLIADEPTTA-----LDVTIQAQIIELLLELQQ  201 (326)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            4445557899999999999999999999     999999999999998754

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.77  E-value=4e-08  Score=74.41  Aligned_cols=47  Identities=21%  Similarity=0.306  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.++...+|.+++...|+++++|||.+.     +|....++++-.++.++.+
T Consensus       131 GGEkQRVAIGRALLt~P~LLLmDEPLaS-----LD~~RK~EilpylERL~~e  177 (352)
T COG4148         131 GGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKREILPYLERLRDE  177 (352)
T ss_pred             cchhhHHHHHHHHhcCCCeeeecCchhh-----cccchhhHHHHHHHHHHHh
Confidence            4456669999999999999999999999     9999999999999988765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.77  E-value=1.1e-07  Score=71.75  Aligned_cols=47  Identities=21%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       152 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  198 (224)
T TIGR02324       152 GGEQQRVNIARGFIADYPILLLDEPTAS-----LDAANRQVVVELIAEAKAR  198 (224)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     9999999999999887544

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=2.8e-08  Score=77.89  Aligned_cols=46  Identities=17%  Similarity=0.126  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       153 ~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~~~~  198 (289)
T PRK13645        153 GGQKRRVALAGIIAMDGNTLVLDEPTGG-----LDPKGEEDFINLFERLNK  198 (289)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999887743

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.77  E-value=1.9e-07  Score=70.76  Aligned_cols=46  Identities=22%  Similarity=0.218  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       117 gG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~  162 (230)
T TIGR01184       117 GGMKQRVAIARALSIRPKVLLLDEPFGA-----LDALTRGNLQEELMQIWE  162 (230)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            4445567899999999999999999999     999999999999988654

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=4.8e-08  Score=75.96  Aligned_cols=47  Identities=11%  Similarity=0.051  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..+
T Consensus       139 ~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~  185 (274)
T PRK13644        139 GGQGQCVALAGILTMEPECLIFDEVTSM-----LDPDSGIAVLERIKKLHEK  185 (274)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999887543

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=3.4e-08  Score=75.47  Aligned_cols=46  Identities=20%  Similarity=0.248  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       144 ~G~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~~l~~~l~~~~~  189 (242)
T PRK11124        144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIRELAE  189 (242)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=2.5e-08  Score=77.55  Aligned_cols=59  Identities=22%  Similarity=0.138  Sum_probs=44.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      .+.++++++|.+|+|||||+|++.. .........+|+|.....+.+..   .+.++||||..
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~-~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~~  174 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAG-KKVAKVGNRPGVTKGQQWIKLSD---GLELLDTPGIL  174 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhC-CCccccCCCCCeecceEEEEeCC---CEEEEECCCcc
Confidence            3568999999999999999999654 33344566778887776655532   57899999974

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=1.4e-07  Score=72.68  Aligned_cols=46  Identities=15%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.+.++..
T Consensus       156 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~  201 (255)
T PRK11300        156 YGQQRRLEIARCMVTQPEILMLDEPAAG-----LNPKETKELDELIAELRN  201 (255)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHh
Confidence            4445668899999999999999999999     999999999999988754

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.76  E-value=9.6e-08  Score=74.10  Aligned_cols=46  Identities=24%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+.+.+.+.++..
T Consensus       163 ~Gq~qrv~lAral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~  208 (269)
T cd03294         163 GGMQQRVGLARALAVDPDILLMDEAFSA-----LDPLIRREMQDELLRLQA  208 (269)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988743

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=3.2e-08  Score=77.16  Aligned_cols=46  Identities=13%  Similarity=0.150  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.....+.+.++++..
T Consensus       143 ~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~  188 (279)
T PRK13635        143 GGQKQRVAIAGVLALQPDIIILDEATSM-----LDPRGRREVLETVRQLKE  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.76  E-value=9.5e-08  Score=76.79  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-++....|++++..+|+++++|||.++     +|........+.++++..+
T Consensus       139 gGq~QRvalArAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~  185 (353)
T PRK10851        139 GGQKQRVALARALAVEPQILLLDEPFGA-----LDAQVRKELRRWLRQLHEE  185 (353)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            4456668899999999999999999999     9999999999999887653

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.76  E-value=1.2e-07  Score=72.26  Aligned_cols=46  Identities=22%  Similarity=0.264  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       139 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  184 (239)
T cd03296         139 GGQRQRVALARALAVEPKVLLLDEPFGA-----LDAKVRKELRRWLRRLHD  184 (239)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455567899999999999999999999     999999999999988754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.76  E-value=2.6e-07  Score=68.22  Aligned_cols=45  Identities=11%  Similarity=0.136  Sum_probs=38.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||..+     +|+...+...+.+++..
T Consensus       126 ~G~~~rl~la~al~~~p~~lllDEP~~~-----LD~~~~~~l~~~l~~~~  170 (195)
T PRK13541        126 SGMQKIVAIARLIACQSDLWLLDEVETN-----LSKENRDLLNNLIVMKA  170 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence            3345558899999999999999999999     99999999988887543

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.76  E-value=5.1e-08  Score=73.88  Aligned_cols=46  Identities=15%  Similarity=0.127  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       128 ~G~~qrv~laral~~~p~vllLDEPt~~-----LD~~~~~~l~~~l~~~~~  173 (230)
T TIGR02770       128 GGMLQRVMIALALLLEPPFLIADEPTTD-----LDVVNQARVLKLLRELRQ  173 (230)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----cCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.76  E-value=1.8e-07  Score=69.92  Aligned_cols=46  Identities=22%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|........+.++++..
T Consensus       131 ~G~~qrv~ia~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  176 (211)
T cd03298         131 GGERQRVALARVLVRDKPVLLLDEPFAA-----LDPALRAEMLDLVLDLHA  176 (211)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988753

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.76  E-value=1.6e-07  Score=70.75  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|........+.++++..
T Consensus       144 ~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~  189 (220)
T TIGR02982       144 GGQKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGRDVVELMQKLAR  189 (220)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988753

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.75  E-value=1.7e-08  Score=75.45  Aligned_cols=51  Identities=24%  Similarity=0.283  Sum_probs=41.9

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++|..  +....++|+|.-.|++.++|||.+.     +|+-.+....+.+.++..
T Consensus       133 P~eLSGGQ--QQRVGv~RALAadP~ilLMDEPFgA-----LDpI~R~~lQ~e~~~lq~  183 (309)
T COG1125         133 PHELSGGQ--QQRVGVARALAADPPILLMDEPFGA-----LDPITRKQLQEEIKELQK  183 (309)
T ss_pred             chhcCcch--hhHHHHHHHHhcCCCeEeecCCccc-----cChhhHHHHHHHHHHHHH
Confidence            45555544  5568999999999999999999999     999998888888877644

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.75  E-value=1.5e-07  Score=78.93  Aligned_cols=50  Identities=28%  Similarity=0.349  Sum_probs=41.9

Q ss_pred             EeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          151 EISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      .+..++  |.++....+++.+...|.++++|||+.+     +|.+....+.+.+...
T Consensus       436 ~v~~LS--GGEk~Rl~La~ll~~~pNvLiLDEPTNh-----LDi~s~~aLe~aL~~f  485 (530)
T COG0488         436 PVGVLS--GGEKARLLLAKLLLQPPNLLLLDEPTNH-----LDIESLEALEEALLDF  485 (530)
T ss_pred             chhhcC--HhHHHHHHHHHHhccCCCEEEEcCCCcc-----CCHHHHHHHHHHHHhC
Confidence            344444  5556778899999999999999999999     9999999999988765

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=3.3e-08  Score=77.09  Aligned_cols=46  Identities=11%  Similarity=0.129  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++...|+++++|||+.+     +|+...+...+.++++..
T Consensus       143 gGq~qrv~lAral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~  188 (279)
T PRK13650        143 GGQKQRVAIAGAVAMRPKIIILDEATSM-----LDPEGRLELIKTIKGIRD  188 (279)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.74  E-value=4.8e-08  Score=71.95  Aligned_cols=46  Identities=22%  Similarity=0.269  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||..+     +|....+...+.++++..
T Consensus       111 gGe~qrv~la~al~~~p~vlllDEP~~~-----LD~~~~~~l~~~l~~~~~  156 (192)
T cd03232         111 VEQRKRLTIGVELAAKPSILFLDEPTSG-----LDSQAAYNIVRFLKKLAD  156 (192)
T ss_pred             HHHhHHHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            3345557899999999999999999999     999999999999988754

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.74  E-value=7.1e-08  Score=79.39  Aligned_cols=50  Identities=14%  Similarity=0.217  Sum_probs=45.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      .-++.+.+|++++..+.++.++|||++.     +...+.+.+.+.++++..+.++
T Consensus       148 iaqrQ~VeIArAl~~~arllIlDEPTaa-----Lt~~E~~~Lf~~ir~Lk~~Gv~  197 (500)
T COG1129         148 IAQRQMVEIARALSFDARVLILDEPTAA-----LTVKETERLFDLIRRLKAQGVA  197 (500)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhCCCE
Confidence            4477889999999999999999999999     9999999999999999887653

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.74  E-value=3e-07  Score=70.50  Aligned_cols=46  Identities=24%  Similarity=0.323  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       147 gG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  192 (247)
T TIGR00972       147 GGQQQRLCIARALAVEPEVLLLDEPTSA-----LDPIATGKIEELIQELKK  192 (247)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHh
Confidence            4456668899999999999999999999     999999999999988754

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.74  E-value=2.2e-07  Score=66.78  Aligned_cols=44  Identities=23%  Similarity=0.256  Sum_probs=38.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++
T Consensus        94 ~G~~~rv~laral~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~  137 (166)
T cd03223          94 GGEQQRLAFARLLLHKPKFVFLDEATSA-----LDEESEDRLYQLLKEL  137 (166)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----cCHHHHHHHHHHHHHh
Confidence            3456668899999999999999999999     9999999999888875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.74  E-value=2.4e-07  Score=70.73  Aligned_cols=46  Identities=22%  Similarity=0.272  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|........+.++++..
T Consensus       139 ~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  184 (240)
T PRK09493        139 GGQQQRVAIARALAVKPKLMLFDEPTSA-----LDPELRHEVLKVMQDLAE  184 (240)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     999999999999988754

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.74  E-value=1.8e-07  Score=70.76  Aligned_cols=46  Identities=22%  Similarity=0.301  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       149 ~Ge~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  194 (228)
T PRK10584        149 GGEQQRVALARAFNGRPDVLFADEPTGN-----LDRQTGDKIADLLFSLNR  194 (228)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     999999999999988743

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.74  E-value=2.7e-07  Score=74.33  Aligned_cols=46  Identities=24%  Similarity=0.319  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||.++     +|....+.+.+.++++..
T Consensus       131 gGq~qRvalaraL~~~p~llLLDEPts~-----LD~~~~~~l~~~L~~l~~  176 (352)
T PRK11144        131 GGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKRELLPYLERLAR  176 (352)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.74  E-value=5.6e-08  Score=75.25  Aligned_cols=46  Identities=20%  Similarity=0.169  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       153 gGe~qrv~laral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~  198 (265)
T TIGR02769       153 GGQLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQAVILELLRKLQQ  198 (265)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.74  E-value=3.8e-07  Score=70.39  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       151 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  196 (258)
T PRK14241        151 GGQQQRLCIARAIAVEPDVLLMDEPCSA-----LDPISTLAIEDLINELKQ  196 (258)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     999999999999988753

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.73  E-value=9.2e-08  Score=72.49  Aligned_cols=46  Identities=17%  Similarity=0.230  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.+.++..
T Consensus       134 ~G~~qrv~la~al~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~  179 (230)
T TIGR03410       134 GGQQQQLAIARALVTRPKLLLLDEPTEG-----IQPSIIKDIGRVIRRLRA  179 (230)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4445568899999999999999999999     999999999999988754

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.73  E-value=4.2e-07  Score=69.00  Aligned_cols=46  Identities=22%  Similarity=0.356  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|++.++|||..+     +|........+.++++..
T Consensus       133 ~G~~qrl~laral~~~p~llllDEP~~g-----LD~~~~~~l~~~l~~~~~  178 (232)
T cd03300         133 GGQQQRVAIARALVNEPKVLLLDEPLGA-----LDLKLRKDMQLELKRLQK  178 (232)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=2.4e-07  Score=72.33  Aligned_cols=47  Identities=13%  Similarity=0.171  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+...+...+.++++..+
T Consensus       148 gG~~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  194 (280)
T PRK13649        148 GGQMRRVAIAGILAMEPKILVLDEPTAG-----LDPKGRKELMTLFKKLHQS  194 (280)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            4456667899999999999999999999     9999999999999887543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.73  E-value=4.1e-07  Score=68.12  Aligned_cols=46  Identities=20%  Similarity=0.174  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|........+.++++..
T Consensus       131 ~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~  176 (213)
T TIGR01277       131 GGQRQRVALARCLVRPNPILLLDEPFSA-----LDPLLREEMLALVKQLCS  176 (213)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4445668899999999999999999999     999999999999988754

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.73  E-value=3.6e-08  Score=80.45  Aligned_cols=70  Identities=19%  Similarity=0.191  Sum_probs=51.2

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhh-------ccHHHHHHHHHhh-----cCCCCEEEEEeCC
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-------KNVPTWHRDLCRV-----CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-------~~~~~~~~~~~~~-----~~~~p~i~v~nk~  127 (221)
                      +...+.++|++|+...+..|..++.+++++++|+++++-.-.       ..+..-+..+...     ..+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            567899999999999999999999999999999998743221       1122222222222     2578999999999


Q ss_pred             CC
Q 027593          128 DV  129 (221)
Q Consensus       128 D~  129 (221)
                      |+
T Consensus       314 D~  315 (389)
T PF00503_consen  314 DL  315 (389)
T ss_dssp             HH
T ss_pred             HH
Confidence            96

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.73  E-value=1.8e-08  Score=77.58  Aligned_cols=158  Identities=17%  Similarity=0.109  Sum_probs=93.1

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEE--EEecCeEEEEEEEeCCCcc--ccccccccc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRFYCWDTAGQE--KFGGLRDGY   82 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~D~~g~~--~~~~~~~~~   82 (221)
                      .+...+..-|+++|-.++|||||++++......+..  ....|.++..  ...- .+..+.+.||.|.-  -...+...|
T Consensus       172 gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~d--rLFATLDpT~h~a~Lp-sg~~vlltDTvGFisdLP~~LvaAF  248 (410)
T KOG0410|consen  172 GREGESSPVIAVVGYTNAGKSTLIKALTKAALYPND--RLFATLDPTLHSAHLP-SGNFVLLTDTVGFISDLPIQLVAAF  248 (410)
T ss_pred             ccccCCCceEEEEeecCccHHHHHHHHHhhhcCccc--hhheeccchhhhccCC-CCcEEEEeechhhhhhCcHHHHHHH
Confidence            345566788999999999999999997643333322  2222222221  1111 23566778998832  112222222


Q ss_pred             ------ccCccEEEEEEeCCChhhhccHHHHHHHHHhh-cCCCCE----EEEEeCCCCCcccccHHHHHHHHhcCceEEE
Q 027593           83 ------YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPI----VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        83 ------~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~----i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~  151 (221)
                            ...+|.++-|.|++++..-......+..+.+. .+..|.    +-|-||.|........+      .  ...+.
T Consensus       249 ~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~--n~~v~  320 (410)
T KOG0410|consen  249 QATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K--NLDVG  320 (410)
T ss_pred             HHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------c--CCccc
Confidence                  56889999999999985433333333333322 112232    44567777654332221      1  12567


Q ss_pred             eecCCCCChHHHHHHHHHHHhCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      +|+++|.|.+++...+-.++....
T Consensus       321 isaltgdgl~el~~a~~~kv~~~t  344 (410)
T KOG0410|consen  321 ISALTGDGLEELLKAEETKVASET  344 (410)
T ss_pred             cccccCccHHHHHHHHHHHhhhhh
Confidence            899999999999988888776543

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.73  E-value=1.9e-07  Score=77.44  Aligned_cols=46  Identities=24%  Similarity=0.239  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.......|+.++..+|++++.|||+..     +|...++++++.++++..
T Consensus       157 GG~rQRv~iAmALa~~P~LLIaDEPTTa-----LDvt~q~qIL~llk~l~~  202 (539)
T COG1123         157 GGMRQRVMIAMALALKPKLLIADEPTTA-----LDVTTQAQILDLLKDLQR  202 (539)
T ss_pred             chHHHHHHHHHHHhCCCCEEEECCCccc-----cCHHHHHHHHHHHHHHHH
Confidence            5555667899999999999999999999     999999999999998864

>cd01855 YqeH YqeH

Probab=98.73  E-value=7.8e-08  Score=70.70  Aligned_cols=107  Identities=15%  Similarity=0.135  Sum_probs=74.0

Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHH-----HhcC--
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFH-----RKKN--  146 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~-----~~~~--  146 (221)
                      +...+..++..++++++|+|+++...-     |...+.....+.|+++|+||+|+.......... .+.     ...+  
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            356667788999999999999875421     222222223478999999999986533322211 222     2222  


Q ss_pred             -ceEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593          147 -LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       147 -~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                       ..++.+|++++.|+++++..|...+.....+.+.-.|..+
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvG  139 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVG  139 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCC
Confidence             2689999999999999999999988766666676766655

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.72  E-value=4.3e-07  Score=69.71  Aligned_cols=46  Identities=20%  Similarity=0.258  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|+...+...+.++++..
T Consensus       149 gG~~qrv~laral~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~  194 (250)
T PRK14247        149 GGQQQRLCIARALAFQPEVLLADEPTAN-----LDPENTAKIESLFLELKK  194 (250)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     999999999999988753

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.72  E-value=3.2e-08  Score=78.41  Aligned_cols=59  Identities=25%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      +.++++|+|.|++|||||||+ +.++......+.+|+|.....+.+..+   +.++||||...
T Consensus       131 ~~~~v~vvG~PNVGKSslIN~-L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii~  189 (322)
T COG1161         131 RKIRVGVVGYPNVGKSTLINR-LLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIP  189 (322)
T ss_pred             cceEEEEEcCCCCcHHHHHHH-HhcccceeeCCCCceecceEEEEcCCC---eEEecCCCcCC
Confidence            458899999999999999999 555555777888899999888877654   88999999553

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.72  E-value=5.3e-08  Score=74.36  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+...+.++++..
T Consensus       134 ~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  179 (241)
T PRK14250        134 GGEAQRVSIARTLANNPEVLLLDEPTSA-----LDPTSTEIIEELIVKLKN  179 (241)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455667899999999999999999999     999999999999988754

>cd01859 MJ1464 MJ1464

Probab=98.72  E-value=5e-08  Score=69.41  Aligned_cols=56  Identities=20%  Similarity=0.220  Sum_probs=41.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      ...+++++|.+|+|||||+|++.. .....+.++.|++........+   ..+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~-~~~~~~~~~~~~t~~~~~~~~~---~~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKG-RHSASTSPSPGYTKGEQLVKIT---SKIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhC-CCccccCCCCCeeeeeEEEEcC---CCEEEEECcC
Confidence            357899999999999999999664 4445556677776554333332   2689999998

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.72  E-value=4.2e-07  Score=69.15  Aligned_cols=46  Identities=22%  Similarity=0.353  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+.+     +|....+...+.++++..
T Consensus       132 ~G~~qrl~laral~~~p~llllDEPt~g-----LD~~~~~~l~~~l~~~~~  177 (235)
T cd03299         132 GGEQQRVAIARALVVNPKILLLDEPFSA-----LDVRTKEKLREELKKIRK  177 (235)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999988654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.72  E-value=2.5e-07  Score=70.99  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       123 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~~  168 (251)
T PRK09544        123 GGETQRVLLARALLNRPQLLVLDEPTQG-----VDVNGQVALYDLIDQLRR  168 (251)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     999999999999987654

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.72  E-value=1.5e-07  Score=73.12  Aligned_cols=47  Identities=17%  Similarity=0.277  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|+++++|||..+     +|+...+...+.++++..+
T Consensus       145 gG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~~  191 (272)
T PRK15056        145 GGQKKRVFLARAIAQQGQVILLDEPFTG-----VDVKTEARIISLLRELRDE  191 (272)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhC
Confidence            4445668899999999999999999999     9999999999999887544

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.72  E-value=1.3e-07  Score=74.34  Aligned_cols=160  Identities=16%  Similarity=0.216  Sum_probs=93.4

Q ss_pred             CCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-----------------------CCceeEeeeEEEEe--
Q 027593            3 LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----------------------PTIGVEVHPLDFFT--   57 (221)
Q Consensus         3 ~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~--   57 (221)
                      +|.+|  ...+++++++|.-.+|||||+-.+..+.......                       ...|.+.....+..  
T Consensus       159 vPd~Q--qfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~  236 (591)
T KOG1143|consen  159 VPDSQ--QFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQ  236 (591)
T ss_pred             CCCcc--cceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhh
Confidence            34444  5668999999999999999999877655532111                       01111111111100  


Q ss_pred             --------cCeEEEEEEEeCCCccccccccccccc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593           58 --------NCGKIRFYCWDTAGQEKFGGLRDGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        58 --------~~~~~~~~~~D~~g~~~~~~~~~~~~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~  127 (221)
                              +...-.++++|.+|+.+|......-+.  ..+..++++++........ +.-+..+...  ++|+.++++|+
T Consensus       237 ~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~AL--~iPfFvlvtK~  313 (591)
T KOG1143|consen  237 NMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT-REHLGLIAAL--NIPFFVLVTKM  313 (591)
T ss_pred             cccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc-HHHHHHHHHh--CCCeEEEEEee
Confidence                    112235889999999887654433332  3467778888775543321 1122222222  89999999999


Q ss_pred             CCCccccc--------------------------HHHH----HHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593          128 DVKNRQVK--------------------------AKQV----TFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus       128 D~~~~~~~--------------------------~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |+..++-.                          .+..    +.+...-.|.|.+|+.+|+|++.+...|
T Consensus       314 Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             ccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            98654211                          1111    2222234689999999999988655433

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.71  E-value=1.8e-07  Score=74.63  Aligned_cols=46  Identities=24%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+.....|++++..+|+++++|||+.+     +|...+.++.+.++++..
T Consensus       164 gG~~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~i~~lL~~l~~  209 (331)
T PRK15079        164 GGQCQRIGIARALILEPKLIICDEPVSA-----LDVSIQAQVVNLLQQLQR  209 (331)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.5e-08  Score=82.46  Aligned_cols=48  Identities=25%  Similarity=0.250  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |.+.....++|++..+++++++|||+++     +|.++.+.+.+.+.+++.+.
T Consensus       459 gGQ~QRlaLARAll~~~~l~llDEpTA~-----LD~etE~~i~~~l~~l~~~k  506 (559)
T COG4988         459 GGQAQRLALARALLSPASLLLLDEPTAH-----LDAETEQIILQALQELAKQK  506 (559)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEecCCccC-----CCHhHHHHHHHHHHHHHhCC
Confidence            4466778999999999999999999999     99999999999999887653

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.71  E-value=7.6e-07  Score=69.68  Aligned_cols=47  Identities=28%  Similarity=0.390  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||..+     +|....+.+.+.++++..+
T Consensus       183 gGe~qrv~LAraL~~~p~lLLLDEPts~-----LD~~~~~~l~~~L~~~~~~  229 (285)
T PRK14254        183 GGQQQRLCIARAIAPDPEVILMDEPASA-----LDPVATSKIEDLIEELAEE  229 (285)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHhcC
Confidence            4455668899999999999999999999     9999999999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		2e-93
1byu_A	216	Canine Gdp-Ran Length = 216		7e-91
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		4e-90
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-90
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		1e-89
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		2e-89
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		2e-89
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		2e-89
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		3e-89
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		6e-89
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-88
3icq_B	171	Karyopherin Nuclear State Length = 171		5e-83
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		5e-83
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-82
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-81
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-81
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-81
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-43
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		9e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-26
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-23
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-22
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-22
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		6e-22
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		7e-22
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		7e-22
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		7e-22
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-22
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-22
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-21
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-21
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-21
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-21
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-21
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-21
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-21
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-21
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		1e-20
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-20
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-20
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-20
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-20
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-20
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-20
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		5e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		5e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		8e-20
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		9e-20
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-19
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-19
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-19
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-19
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-19
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-19
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-19
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-19
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-19
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-19
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-19
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		5e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-19
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		9e-19
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-18
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		2e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		4e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		4e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-18
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-18
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-18
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		6e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-18
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		9e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		1e-17
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-17
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-17
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-17
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-17
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-17
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		1e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		2e-17
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-17
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-17
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		4e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-17
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		4e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		8e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-15
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-15
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		1e-14
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-14
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-14
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		4e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-14
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-14
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		7e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		9e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-13
1mh1_A	186	Small G-Protein Length = 186		2e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-13
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		3e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		6e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		7e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		8e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-12
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		2e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		4e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		6e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		6e-12
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		7e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-11
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		5e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		5e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-11
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		6e-11
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		6e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		7e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		8e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		8e-11
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		8e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-11
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-10
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		5e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		5e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		5e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		1e-09
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		1e-09
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-09
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-09
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-09
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-09
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		3e-09
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		3e-09
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		4e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		4e-09
2kb0_A	178	Cdc42(T35a) Length = 178		4e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-09
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		8e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-07
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		1e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-05
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		4e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		1e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		3e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		4e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		5e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		6e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		6e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		8e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		9e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		9e-04

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  338 bits (866), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 161/217 (74%), Positives = 180/217 (82%), Gaps = 1/217 (0%)
Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           M+ P+    + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G
Sbjct: 1   MSAPAANG-EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 59
Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           +I+F  WDTAG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 60  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 119
Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 120 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 179
Query: 181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDDDD 217
            SPALAPPEVQ+D               + PLPD+DD
Sbjct: 180 ASPALAPPEVQVDEQLMQQYQQEMEQATALPLPDEDD 216

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  329 bits (844), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 170/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  327 bits (837), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 169/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 15  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 74
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 75  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 135 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 194
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 195 DPALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  327 bits (837), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 169/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 169/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EK+GGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  325 bits (832), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGL DGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  324 bits (831), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P LAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  324 bits (830), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 154/205 (75%), Positives = 168/205 (81%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGE EKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 194 XXXXXXXXXXXXXXXSQPLPDDDDD 218
                          +  LPD+DDD
Sbjct: 196 PALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  323 bits (827), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 154/206 (74%), Positives = 167/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAII FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV  
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVX 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDDDDD 218
           D               +  LPD+DDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  319 bits (818), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 165/202 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182
Query: 193 DXXXXXXXXXXXXXXXSQPLPD 214
           D               +  LPD
Sbjct: 183 DPALAAQYEHDLEVAQTTALPD 204

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  303 bits (776), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 121 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  303 bits (776), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 122 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 152/168 (90%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 151/170 (88%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 132
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 133 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  296 bits (759), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/171 (81%), Positives = 151/171 (88%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 150/167 (89%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAG 71
           ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVK 130
           QEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+K
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
Query: 189 EVQID 193
           EV  D
Sbjct: 191 EVNYD 195

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            +NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/165 (34%), Positives = 89/165 (53%), Gaps = 3/165 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDTAGQE
Sbjct: 27  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQE 86
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  VL GNK+D+  R
Sbjct: 87  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           +  ++Q    F   +++ Y E SAK + N EK FL LA +L  + 
Sbjct: 147 REVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD---- 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D    
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 129 --VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +KN + +       ++  L++Y  S K + N  + F YLA K
Sbjct: 125 SCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +K RQV  ++     K N    Y+E SAK + N    F    R++
Sbjct: 132 IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K NL + E SA  + N E+ F
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK+D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 130 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 9/188 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 4   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 182
           NK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIES 177
Query: 183 PALAPPEV 190
             L P  +
Sbjct: 178 GELDPERM 185

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F  +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGD   GKT  V+R  TG F ++   TIGV+           +++   WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           +F  +   YY     AI+ +D+T R ++ +VP W  D+ +    NI  +L GNK D+   
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-- 147
Query: 133 QVKAKQVTFHRKKNL-QYYEI------SAKSNYNFEKPFLYLARKL 171
             + ++V+    ++L ++Y+I      SAK + N E+ FL +A +L
Sbjct: 148 --ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV++GD G GK++ V R +  +F +  E TIG          N   ++F  WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-R 132
           +  L   YY     AII+FDVT + +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK 129
Query: 134 VKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164
           V   +    F  +  +Q +E SAK N N E+ F
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190
           R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P  +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TI           +   ++F  WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 129 VKNRQVKAKQVTFHRKKNLQ--YYEISAKSNYNFEKPFLYLARKL 171
            ++RQV  ++      +N    Y E SAK + N    F    R++
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVK 130
           E+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 131 NRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NR+V + + + F RK +  + E SAK+    +  F  L  K+   P L   E+    P 
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-- 129
           E+F  L   YY + Q A++++DVT   ++     W ++L  +  ++I I L GNK+D   
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 130 ---KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 5   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 64  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++R
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   K+    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I L GNK D+++ 
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I L GNK D+++ 
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV +G+   GKT+ + R     F+  Y+ TIG++      + + G +R   WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      AI+++D+T R +++N   W +D L    +++ I L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD- 120
Query: 133 QVKAKQVTFH------RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++VT+       ++ N  ++E SAK+ +N +  F   A KL
Sbjct: 121 ---LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   ++     W  D+      ++ I+L GNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 136 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 133 Q-VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + VK ++   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 2   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAG E+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 61  IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 146 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 3   KTYDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 126 KVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           K DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +    + ++
Sbjct: 122 KCDVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177
Query: 180 VESPA 184
             + A
Sbjct: 178 KATAA 182

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK   + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
           FK+V++GD G GK+  + R    EF  + + TIGVE         N   I+   WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN 131
           E++  +   YY     A++++D+T + +++N+  W ++L    + NI I+L GNK D+K+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 132 RQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            +V        + +K+ L + E SA    N E  F
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIR 63
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        N            K+ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 122 LCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
           L GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 86/165 (52%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     +   Y  TIGV+            ++   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      II++DVT R ++ NV  W +++ R   EN+  +L GNK D+ ++
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
           +V    VT    + L      ++ E SAK+ YN E+ F  +A ++
Sbjct: 130 RV----VTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/157 (32%), Positives = 83/157 (52%), Gaps = 3/157 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF    + TIGVE           +I+   WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           R V  ++  TF ++  L + E SA ++ N +K F  L
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           +DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   WD
Sbjct: 3   MDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK 
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121
Query: 128 DVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
           DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +
Sbjct: 122 DVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 QVKAKQVTF----HRKKNLQ--YYEISAKSNYNFEKPFLYLARKL 171
               +Q+T      R K L   + E SAK+ YN ++ F  +A  L
Sbjct: 123 ----RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 V----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 121 VVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 151 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-N 131
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146
Query: 132 RQVK-------AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168
           R++        A+Q+T      +++ E SAK N+N ++ FL L 
Sbjct: 147 REITRQQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFLKLV 185

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L G K D+  +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 129 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F   A ++
Sbjct: 154 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 3   LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
           +P     DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   +
Sbjct: 12  VPRGSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 70
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-V 121
           +   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +
Sbjct: 71  KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 130
Query: 122 LCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+K+++V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.8 bits (216), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F  +Y+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           +V    + +Q+  H     +++E SAK N N ++ F
Sbjct: 126 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 159

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK 130
           QE+F  +   YY      ++++DVT + ++ N+  W  ++    + ++ ++L GNKVD  
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 131 NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +V  ++      ++  L + E SAK+  N +  F  +A++L
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +   +  K+     WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNK 126
           E+F  L   +Y    C ++++DVT   +++N+ +W RD   V  N+      P V+ GNK
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNK 127
Query: 127 VDV-KNRQVKAKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLAR 169
           +D  +++++ +++      K+L     +  SAK+  N +  F  +AR
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIR 63
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+ 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 LCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
           L GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R  T EF  + + TIGVE           KI+   WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  +  + + E SA ++ N +K F
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 82/169 (48%), Gaps = 11/169 (6%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           ++K+V+ GD   GK++F+ R    EF +    T+GV+        +  +     WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK 130
           E+F  +   Y+      ++++DVT   ++ N+  W  D+      E +PI+L GNK D++
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWV-DMIEDAAHETVPIMLVGNKADIR 146
Query: 131 NRQVKAKQVT----FHRKKNLQY----YEISAKSNYNFEKPFLYLARKL 171
           +      Q      F  K  + Y     E SAK   N  +  L+LAR++
Sbjct: 147 DTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF 64
           SQQ  +    KLVIVGDG  GKT  +  +  G+F + Y PT+  E +  D   +  ++  
Sbjct: 2   SQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVEL 60
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLC 123
             WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L 
Sbjct: 61  ALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILV 120
Query: 124 GNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPFLYLA 168
           G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F    
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAAT 180
Query: 169 R 169
           R
Sbjct: 181 R 181

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G  G GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+ +D+T   ++  V  W   +     +N  ++L GNK D ++ 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +V    + +Q+  H     +++E SAK N N ++ F  L
Sbjct: 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERL 165

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D+T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 139
Query: 130 KNRQVKAKQV------TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++    A QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct: 140 RS----AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      + +  +++  
Sbjct: 17  QGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L G
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Query: 125 NKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D++  +V    K      +    ++E SAK N +  + F
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   R+   + VT+HR + +        Y E SA+ + N    F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 133 QVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 164
           +V   +       +L  +++E SAK N N ++ F
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWD 68
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WD
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIWD 78
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 148
Query: 130 KNR-QVKAKQVT-FHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++  QV       F    +   +E SAK+   N + E  F  LA KL
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L      EN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 159
           CGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV 129
             +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 39/198 (19%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------------------------ 47
            S+K V++G+   GK++ V R     F +    TIG                        
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 48  -------------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94
                        +     ++  N   I+F  WDTAGQE++  +   YY    CAI++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 95  VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS 153
           ++   T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + S
Sbjct: 126 ISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 154 AKSNYNFEKPFLYLARKL 171
           AK+  N +  F  LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 124 DKDTIEKLKEKKLT 137

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 125
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 126 DKDTIEKLKEKKLT 139

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F   Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +   R   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
             A+++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 132 DKDTIEKLKEKKLT 145

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 70.1 bits (170), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 140
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 141 DKDTIEKLKEKKLT 154

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++ 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 133 Q---------VKAKQVTFHRKKNL----QYYEISAKSNYNFEKPF 164
           +         V    V     K L     Y E S+KS  N +  F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWDTAGQEKFGGLRD 80
           K+    + +   F   Y+PTI       D +T    +     R    DTAGQE+FG +R+
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILDTAGQEEFGAMRE 75
Query: 81  GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KA 136
            Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D+++ RQV ++
Sbjct: 76  QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135
Query: 137 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++     N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMAN 169

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 128
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 129 DKDTIEKLKEKKLT 142

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T     +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 125 DKDTIEKLKEKKLT 138

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128
Query: 133 Q---------VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPF 164
           +         + + Q    RK+     Y E S+K+  N +  F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 62/111 (55%), Gaps = 4/111 (3%)
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
           R    DTAGQE+FG +R+ Y   G+  +++F VT R +++ +  + R + RV   +  P+
Sbjct: 54  RLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPM 113
Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           +L GNK D+ + RQV  ++     R+  + Y E SAK   N ++ F  L R
Sbjct: 114 ILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 133 QV------KAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 164
           +        A  +T ++ + L+       Y E S+K+  N +  F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG     LDFF           +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG-----LDFFLRRITLPGNLNVTLQIW 61
Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---PIV-LC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E     P+V L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 124 GNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           GNK+D+++ R +K  K + F ++     + +SAK+  +    F  +A ++ G
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++ + G GG GK++ V R + G F + Y PT+      +    +C K        DT G
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---ISCDKSICTLQITDTTG 60
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVD 128
             +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK D
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 129 VK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              +R+V++ +     R     + E SAK N+N ++ F  L
Sbjct: 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F +KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+PS+   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D   +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DT
Sbjct: 6   DMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDT 64
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127
           AGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK 
Sbjct: 65  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 124
Query: 128 DVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 125 DLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  +    F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+N+   W  +L      IPIVL G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125
Query: 133 QV------KAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        A  +T  + + L       +Y E S+K+  N +  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+PS+   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+PS+   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 130 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+PS+   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 5   AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWA 61
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 62  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 120
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 121 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GN+ D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R+ 
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK     + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 125 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +++PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+      +  + N  +   + WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-EEFILHLWDTAGQ 81
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD++
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 140

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +   +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+      +  + N  +   + WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-EEFILHLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD++
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 139

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 13  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 132 DPSTIEKLAKNKQKPI 147

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 123 DPSTIEKLAKNKQKPI 138

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 124 DPSTIEKLAKNKQKPI 139

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 126 DPSTIEKLAKNKQK 139

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TF 141
           GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ +  +       
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +    + E SAKS    ++ F  + R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL GNK D+  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     +   + + E SAK+    E  F  L R++
Sbjct: 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLF------ 56
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 57  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 111
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNL 147
           L G ++D+++     +++  +++K +
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 141 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 124 DPSTIEKLAKNKQK 137

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIH-------------------GQCAIIMFDVTARLTYKNV-PTWHRDLC 112
           E +  LR   Y                         +I F + +  +++NV   W+ ++ 
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 113 RVCENIPIVLCGNKVDVKN-----RQVKAKQVT 140
             C N PI+L G K+D+++      ++K K++T
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 30  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 88
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 89  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 148
Query: 134 VKAKQVTFHRKKNLQY 149
               +++ HR+  + Y
Sbjct: 149 STLVELSNHRQTPVSY 164

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 25  KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 83
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 84  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 143
Query: 134 VKAKQVTFHRKKNLQY 149
               +++ HR+  + Y
Sbjct: 144 STLVELSNHRQTPVSY 159

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 134 VKAKQVTFHRKKNLQY 149
               +++ HR+  + Y
Sbjct: 128 STLVELSNHRQTPVSY 143

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +              DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------IGVEVHPLDFFTNCGKIRFYC 66
           K V+VGDG  GKT+ V  + T  +  +Y PT        + V+  P         +R   
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP---------VRLQL 72
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGN 125
            DTAGQ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G 
Sbjct: 73  CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT 132
Query: 126 KVDV-------------KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           + D+             K + V  +A ++     K   Y E SA +  N ++ F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y P +  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +   +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
            +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGGLRDGYY 83
           K++ V R + G F   Y PTI      +    +C K        DT G  +F  ++    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQV---ISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
Query: 84  IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV- 139
             G   I++F VT++ + + +   ++ + ++    E+IP++L GNK D   R+V  ++  
Sbjct: 78  SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ 137
Query: 140 TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              ++    + E SAK NYN ++ F  L
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +EP    + +      +  ++    +D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG LRD     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 142
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 143 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 52.4 bits (124), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q        KL I G  G GK+  V R LT  F  +Y+PT+    +      +   +   
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STYRHQATIDDEVVSME 79
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 123
             DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L 
Sbjct: 80  ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 124 GNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISA-KSNYNFEKPFLYLARKL 171
           GNK D+  +RQV  ++      +    +YE SA     N  + F  L R++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 59
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 120 MERV----ISYEEGKALAESWNAAFLESSAKEN 148

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW--DTAGQ 72
           K+VI+G    GKT+   + + GEF + Y+PT+    +        GK  F+    DTAGQ
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE---NTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
           +++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK D+ 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142
Query: 131 -NRQVKA 136
             R+V+A
Sbjct: 143 PEREVQA 149

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV----TKGNVTIKIWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   R   +       +L      + IP+++ GNK D+ N
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                + ++   ++  + + +  Y IS K   N +    +L
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 131
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 132 STLMELSHQKQAPISY 147

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 148 STLMELSHQKQAPISY 163

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 15  KLVIVGDGGTGKTTFVKRHLT--GEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTA 70
           K+ +VG+   GK+  +    +   +F K Y  T GVEV   P+        +  +  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPI--VLCGNK 126
           G + +      Y+     AI++FDV++  ++++   W   L   R     P+  VL  NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 VDV--KNRQVKAKQVT-FHRKKNLQYYEISAK-SNYNFEKPFLYLA 168
            D+  +  QV+      +     L ++++SA     + + PFL +A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 130
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 131 STLMELSHQKQAPISY 146

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F    +PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 123 MERV----ISYEEGKALAESWNAAFLESSAKEN 151

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F  K    + E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 121
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 122 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
               +   ++   ++  + + +  Y IS K   N +    +L
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 87
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 88  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 146
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
               +   ++   ++  + + +  Y IS K   N +    +L +
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++G+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 131
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 132 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 91
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G      +   +         D  G
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGG 76
Query: 72  --QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNK- 126
             + +F    D         + +F +   ++++ V  +   LC  R    +P+VL G + 
Sbjct: 77  PPELQFAAWVD-------AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 127 -VDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +   N +V    +A++++   K+   YYE  A    N E+ F  +A+K+  
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKR-CTYYETCATYGLNVERVFQDVAQKVVA 180

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++   C    F  WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNIC----FTVWDVGGQD 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           +   L   Y+ + Q  I + D   R   + V    + +  V E  +  ++L  NK D+ N
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            +   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 73
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 74  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 127
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 128 IFANKQDVK 136

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 52/124 (41%), Gaps = 19/124 (15%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 75  FGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIVLCGNK 126
                + YY + +  I++ D        VT    YK +   H DL +      +++  NK
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLLIFANK 131
Query: 127 VDVK 130
            DVK
Sbjct: 132 QDVK 135

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++V++GD G GKT+       G+ E+     +G +V+      +         DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASL-FAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 74  KF--GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           K      ++     G   +I++ +  R ++++       L R    +++PI+L GNK D+
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 130 -KNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF 164
            + R+V  ++     V F    + ++ E SA   +N  + F
Sbjct: 124 ARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------HPLDFFTNCG 60
           V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V          L+      
Sbjct: 37  VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           +  F+ WD  GQE        +       +++ D     T  N   W R + +     P+
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV 153
Query: 121 VLCGNKVD 128
           ++  NK+D
Sbjct: 154 IVVMNKID 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 55
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 113 LPN-AMNAAEITDKLGLHSLRHRNWY 137

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 55
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG    GKT+ + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          K   L   YY + Q  I + D   R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +   C  I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVECVQY---C-NISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  ++F      I F  WD  GQ+K
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVETVEF----RNISFTVWDVGGQDK 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDV 129
              L   YY +    I + D   R   + +     +L R+      ++  I++  NK D+
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDR---ERIDDAREELHRMINEEELKDAIILVFANKQDL 130
Query: 130 KNRQVKAKQVT 140
            N  + A +VT
Sbjct: 131 PN-AMSAAEVT 140

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.0 bits (92), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 130 LPN-AMNAAEITDKLGLHSLRHRNWY 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-130
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-113
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-47
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-45
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-44
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-44
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	1e-43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-43
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	3e-43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	4e-43
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-43
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	5e-43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-43
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-43
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	1e-42
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-42
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	2e-42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	2e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-42
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-42
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-42
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	1e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	1e-41
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	1e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	4e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	5e-41
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-40
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-40
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-40
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-40
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	2e-40
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-40
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-40
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	6e-40
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	7e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	9e-40
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	4e-39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	4e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	7e-39
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-38
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-38
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	5e-38
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-37
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	2e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-31
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	3e-30
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	4e-30
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	9e-30
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-29
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-29
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-29
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	5e-26
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-21
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-17
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	9e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-06
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	9e-06
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	8e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	1e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  365 bits (940), Expect = e-130
 Identities = 163/218 (74%), Positives = 180/218 (82%), Gaps = 1/218 (0%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA  +Q       FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G
Sbjct: 4   MASAAQGEPQV-QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
            I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 123 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 218
             PALAPPEV +D A   Q+E +L  A +  LPD+DDD
Sbjct: 183 AMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  321 bits (824), Expect = e-113
 Identities = 90/216 (41%), Positives = 133/216 (61%), Gaps = 6/216 (2%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IR 63
           S +  +  ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+
Sbjct: 4   SMERREL-TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVL 122
           F  WDTAGQEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V     PIV+
Sbjct: 63  FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122

Query: 123 CGNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           C NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFV 182

Query: 181 ESPALAPPEVQIDLAAQQQHEA-ELAAAASQPLPDD 215
            +  L P EV  D  + ++ +  +    AS+  P++
Sbjct: 183 SNVNLEPTEVNYDYHSPEESKYIDYMEQASKMAPEE 218

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  152 bits (387), Expect = 7e-47
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVMVDDRLVTMQIWD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ 
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  148 bits (375), Expect = 1e-45
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           +  + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV     DF       N   +R 
Sbjct: 3   EV-AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV-----DFLERQIQVNDEDVRL 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  
Sbjct: 57  MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116

Query: 125 NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK+D+ +   +K ++     ++  L++Y  S K + N  + F YLA K 
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  147 bits (374), Expect = 3e-45
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK++++GDGG GK++ + R++T +F+ +   TIGV     +F       +   +    WD
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ 
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  145 bits (368), Expect = 2e-44
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  + +PTI       D +      +        
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE------DSYRKQVVIDGETCLLDI 55

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  145 bits (368), Expect = 3e-44
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK-IRFYCW 67
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG      DF T     +  K      W
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA-----DFLTKEVTVDGDKVATMQVW 63

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVL 122
           DTAGQE+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 123 CGNKVDVK--NRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK+D +   + V  K      +   ++  +  SAK+  N +  F  +AR  
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  145 bits (368), Expect = 4e-44
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  +Y+PTI       D +      +        
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDI 73

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL G
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

Query: 125 NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V  KQ     +   + + E SAK+    E  F  L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  144 bits (366), Expect = 4e-44
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG+     DFF           +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL-----DFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E       + L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 124 GNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+++ R +   K  +  F ++     + +SAK+  +    F  +A ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLR--FCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  144 bits (366), Expect = 8e-44
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV+VG  G GK+    + +   F  +Y+PTI       D +      +         D
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  143 bits (363), Expect = 1e-43
 Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 14/181 (7%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           M+           FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +   
Sbjct: 3   MSSGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTM 56

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 +R   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+    
Sbjct: 57  YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
             ++ I+L GNK D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L 
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

Query: 173 G 173
           G
Sbjct: 177 G 177

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  143 bits (362), Expect = 2e-43
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            KLV+VG GG GK+    + +   F   Y+PTI       D +T     +    R    D
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ RQV   +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  142 bits (361), Expect = 3e-43
 Identities = 50/179 (27%), Positives = 88/179 (49%), Gaps = 16/179 (8%)

Query: 1   MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           ++     + +     K+++VG GG GK+    + +  EF + YEPT        D +   
Sbjct: 5   ISGGGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 58

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
              +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV
Sbjct: 59  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 118

Query: 115 --CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
              EN+P +L GNK D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 119 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  141 bits (359), Expect = 4e-43
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K+V++G GG GK+    + +TG F +KY+PTI       DF+      +         D
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNK
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VD+++ R+V + +      +    + E SAKS    ++ F  + R
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  143 bits (362), Expect = 4e-43
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MALPSQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           MA    +  +     K+++VG GG GK+    + +  EF + YEPT        D +   
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 54

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
              +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114

Query: 115 --CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
              EN+P +L GNK D    RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  142 bits (361), Expect = 5e-43
 Identities = 53/181 (29%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE---------VHPLDF 55
           S    DY   K + +GD G GKT+ + ++  G+F  K+  T+G++          +  D 
Sbjct: 4   SDGDYDY-LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 56  FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
               G+ I    WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L   
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 114 -VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
              EN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N       L   
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182

Query: 171 L 171
           +
Sbjct: 183 I 183

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  141 bits (358), Expect = 5e-43
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+++VG GG GK+    + +  EF + YEPT        D +      +  +++    D
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  142 bits (361), Expect = 6e-43
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V+ G GG GK++ V R + G F   Y PTI       D +      +         D
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE------DTYRQVISCDKSVCTLQITD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I++F VT++ + + +   ++ + ++    E+IP++L GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 126 KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   R+V  ++     ++    + E SAK NYN ++ F  L  
Sbjct: 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  141 bits (359), Expect = 9e-43
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+VI+G    GKT+   + + GEF + Y+PT+       + ++        +   +  D
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE------NTYSKIVTLGKDEFHLHLVD 78

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQ+++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+   R+V+A +           + E SA+ N   +  F  + +++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  141 bits (358), Expect = 9e-43
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S K+ I+G    GK++   + + G+F   Y+PTI       + FT     N  +      
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE------NTFTKLITVNGQEYHLQLV 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAGQ+++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    R +  ++        N  + E SAK N      F  +  + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  142 bits (360), Expect = 1e-42
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +         +R   WD
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTMYLEDRTVRLQLWD 71

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAG E+F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L G  +         
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES----TQDRS 187

Query: 186 APPEVQIDLAAQQQHEA 202
               + I L   Q+   
Sbjct: 188 REDMIDIKLEKPQEQPV 204

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  141 bits (357), Expect = 1e-42
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
            Y SFK+V++G+G  GKT+ V R+   +F  K+  T+G       F T        ++  
Sbjct: 4   AY-SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA-----SFLTKKLNIGGKRVNL 57

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++    I + + 
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++  R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  141 bits (358), Expect = 1e-42
 Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 16/177 (9%)

Query: 3   LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT----- 57
           L  Q   D   FK+++VG+ G GK+T        + +  +EP         D +      
Sbjct: 14  LYFQGQKDGI-FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE-----DTYERRIMV 67

Query: 58  NCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-- 114
           +  ++    +D   Q   GG LRD     G   +I+F VT R ++  VP     L     
Sbjct: 68  DKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRP 127

Query: 115 CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             ++P++L GNK D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 128 HHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  140 bits (355), Expect = 2e-42
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK+++VG+ G GK+T        + +  +E          D +      +  ++    +D
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE-----DTYERRIMVDKEEVTLIVYD 57

Query: 69  TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
              Q   GG L+D     G   +I+F VT R ++  VP     L       ++P++L GN
Sbjct: 58  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  140 bits (355), Expect = 2e-42
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++ + G GG GK++ V R + G F + Y PT+       D +      +         D
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE------DTYRQVISCDKSICTLQITD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GN
Sbjct: 58  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   +R+V++ +     R     + E SAK N+N ++ F  L  
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  141 bits (358), Expect = 2e-42
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----------V 50
           +        DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++           
Sbjct: 14  LVPRGSGDYDY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 51  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110
            P        K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132

Query: 111 LCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166
           L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK    
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

Query: 167 LARKL 171
           L   +
Sbjct: 193 LLDLI 197

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  140 bits (355), Expect = 2e-42
 Identities = 58/178 (32%), Positives = 96/178 (53%), Gaps = 14/178 (7%)

Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           ++ +       + KLV++GD G GK++ V R +  +F +  E TIG       FF+    
Sbjct: 2   SMAAAGNKSI-NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-----AFFSQTLA 55

Query: 58  -NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 115
            N   ++F  WDTAGQE++  L   YY     AII+FDVT + +++    W ++L     
Sbjct: 56  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            N+ + L GNK D+ + R+V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  140 bits (355), Expect = 2e-42
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FKL+I+GD G GK++ + R     F   Y  TIGV     DF       N  K++ 
Sbjct: 7   DH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV-----DFKIRTVEINGEKVKL 60

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L G
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D    + V+ +    F  +  +Q +E SAK N N E+ F  +   +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  140 bits (355), Expect = 2e-42
 Identities = 58/179 (32%), Positives = 91/179 (50%), Gaps = 16/179 (8%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           MA  +  + + P++KLV+VGDGG GK+    +     F   Y+PTI       D +    
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE------DSYLKHT 59

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114
             +         DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV 
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 115 -CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 169
             E+ P++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  139 bits (353), Expect = 4e-42
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D    K++++GD G GK+  + R +  +F   +  TIG+     DF       N  K++ 
Sbjct: 1   DS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTVDINGKKVKL 54

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE+F  +   YY      I+++D+T   T+ N+  W + +     +   ++L 
Sbjct: 55  QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114

Query: 124 GNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  140 bits (356), Expect = 4e-42
 Identities = 50/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
            +  + ++ D    K++++GD G GK+  + R +  +F   +  TIG+     DF     
Sbjct: 9   ASSGNGKSYDS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTV 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N+  W + +    
Sbjct: 63  DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122

Query: 115 CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  139 bits (353), Expect = 4e-42
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
            FKLV++G+   GK++ V R + G+F +  E TIG       F T     +   ++F  W
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-----AFLTQTVCLDDTTVKFEIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 126
           DTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ N R V  ++  ++    +L + E SAK++ N  + F+ +A+KL
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  138 bits (351), Expect = 7e-42
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ + R +   F+    PTIG       F T          +F  W
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-----SFMTKTVQYQNELHKFLIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAG E+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 127 VDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V    AK   +    +  + E SAK+  N  + F+ ++R++
Sbjct: 121 CDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRI 167

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  139 bits (353), Expect = 7e-42
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ V R +   F+    PTIG       F T          +F  W
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIW 77

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  139 bits (352), Expect = 8e-42
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                 DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +
Sbjct: 21  TRDDEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVD 74

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
              I+   WDTAG E++  +   YY     A++++D+   LTY+NV  W ++L      N
Sbjct: 75  GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134

Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           I I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F  +  ++
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  139 bits (352), Expect = 1e-41
 Identities = 60/179 (33%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +   S +  D+  FK+V++G+ G GKT  V+R   G F      TIGV     DF     
Sbjct: 15  VPRGSMEDYDF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV-----DFMIKTV 68

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +  
Sbjct: 69  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +  VL GNK+D+   R+V  ++   F   +++ Y E SAK + N EK FL LA +L
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  139 bits (352), Expect = 1e-41
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +     +  ++  FK+V++G+ G GKT  + R    EF      TIGV     +F T   
Sbjct: 14  LVPRGSEDYNF-VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-----EFSTRTV 67

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 ++   WDTAG E++  +   YY     A+++FD+T   TY  V  W ++L    
Sbjct: 68  MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              I ++L GNK D+   R+V  ++   F     L + E SA  + N E  F  + +++
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  138 bits (350), Expect = 1e-41
 Identities = 57/176 (32%), Positives = 88/176 (50%), Gaps = 14/176 (7%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
            +     Y  FK +I+GD G GK+  + +    +F      TIGV     +F T     +
Sbjct: 7   TAPYNYSY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-----EFGTRIIEVS 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
             KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120

Query: 118 IPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             I+L GNK D++  R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  138 bits (351), Expect = 1e-41
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
              + V   + K++I+G+ G GK++ + R     F+ +   TIGV     DF       +
Sbjct: 7   GMDEDVLT-TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-----DFKVKTISVD 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 116
             K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   
Sbjct: 61  GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120

Query: 117 NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           +I  +L GNK+D +NR+V   + + F RK ++ + E SAK+    +  F  L  K+   P
Sbjct: 121 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 176 NLHFVESPALAP 187
            L   E+    P
Sbjct: 181 GLWESENQNSGP 192

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  137 bits (348), Expect = 3e-41
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 18/175 (10%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T D+  FK +++G+ GTGK+  + + +  +F+     TIGV     +F +         
Sbjct: 5   ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV-----EFGSKIINVGGKY 58

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I
Sbjct: 59  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118

Query: 121 VLCGNKVDVK-NRQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +LCGNK D+  +R+V    A +  F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 119 ILCGNKKDLDADREVTFLEASR--FAQENELMFLETSALTGENVEEAFVQCARKI 171

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  136 bits (346), Expect = 3e-41
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F +KY+PTI       D +      +C +      D
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQVEVDCQQCMLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

Query: 127 VD-VKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D    R V   + + +   +  N  + E SAKS  N  + F  L R
Sbjct: 118 CDLEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  138 bits (349), Expect = 3e-41
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FK +++G  GTGK+  + + +  +F++    TIGV     +F +         ++ 
Sbjct: 23  DF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-----EFGSRVVNVGGKTVKL 76

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LC
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 124 GNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+   R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  137 bits (348), Expect = 4e-41
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +   I+ 
Sbjct: 3   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVDGKTIKA 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L 
Sbjct: 57  QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V   +   F  K NL + E SA  + N E+ F  +  ++
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  137 bits (347), Expect = 4e-41
 Identities = 53/178 (29%), Positives = 91/178 (51%), Gaps = 18/178 (10%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                  Y  FK +I+GD G GK+  + +     F+  ++ TIGV     +F       +
Sbjct: 13  GLVPRGSY-LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGARMVNID 66

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
             +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N
Sbjct: 67  GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN 126

Query: 118 IPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + I+L GNK D+++ R V   + +   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  137 bits (347), Expect = 5e-41
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G+     DF     
Sbjct: 12  ENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI-----DFKVKTV 65

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             +  +++   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +    
Sbjct: 66  YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +N  ++L GNK D++  R V  ++      +    ++E SAK N +  + F  L   +
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  136 bits (345), Expect = 1e-40
 Identities = 47/175 (26%), Positives = 85/175 (48%), Gaps = 14/175 (8%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
             +  DY  FKL+++G+   GKT+F+ R+    F   +  T+G+     DF       + 
Sbjct: 15  VPRGSDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTVYRHD 68

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
            +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N 
Sbjct: 69  KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNA 128

Query: 119 PIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            ++L GNK D+++ R V A+           +++E SAK N N ++ F  L   +
Sbjct: 129 QVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  137 bits (346), Expect = 1e-40
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE------------------------ 49
           +K V++G+   GK++ V R     F +    TIG                          
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 50  -------------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96
                            ++  N   I+F  WDTAGQE++  +   YY    CAI++FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 97  ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155
              T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + SAK
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186

Query: 156 SNYNFEKPFLYLARKL 171
           +  N +  F  LA ++
Sbjct: 187 TGTNIKNIFYMLAEEI 202

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  135 bits (342), Expect = 2e-40
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K++++G  G GK+   +    G  +       G        +      +  +     +D
Sbjct: 3   YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAG------HTYDRSIVVDGEEASLMVYD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
              Q+    L       G   +I++ VT + +++        L R    +++PI+L GNK
Sbjct: 56  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D V++R+V   +        + ++ E SA  ++N +  F  + R
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  136 bits (344), Expect = 2e-40
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           P   T      K+ +VG+   GK+  +        +F K Y  T GV     +       
Sbjct: 12  PIDITATL-RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV-----EVVVAPVT 65

Query: 58  -NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111
                +    +  DTAG + +      Y+     AI++FDV++  ++++   W   L   
Sbjct: 66  IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125

Query: 112 -CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLY 166
                  +  VL  NK D+     QV+      +     L ++++SA     + + PFL 
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185

Query: 167 LARKL 171
           +A   
Sbjct: 186 IATTF 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  135 bits (343), Expect = 2e-40
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
                DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       + 
Sbjct: 26  MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 79

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
             I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+
Sbjct: 80  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 139

Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 140 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  135 bits (343), Expect = 3e-40
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 24/184 (13%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
               +    ++K+V+ GD   GK++F+ R    EF +    T+GV     DF       +
Sbjct: 20  AKSFSSQK-AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV-----DFQMKTLIVD 73

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
             +     WDTAGQE+F  +   Y+      ++++DVT   ++ N+  W   +     E 
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133

Query: 118 IPIVLCGNKVDVKN-------RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +PI+L GNK D+++       + V     ++          + E SAK   N  +  L+L
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTYGALFCETSAKDGSNIVEAVLHL 191

Query: 168 ARKL 171
           AR++
Sbjct: 192 AREV 195

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  135 bits (341), Expect = 3e-40
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T DY  FKL+++GD G GKT  + R     F   +  TIG+     DF       +  +
Sbjct: 3   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI-----DFKIRTIELDGKR 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  
Sbjct: 57  IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ GNK DV + RQV  ++         +++ E SAK+N N E  F  LAR +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  134 bits (340), Expect = 6e-40
 Identities = 54/175 (30%), Positives = 86/175 (49%), Gaps = 14/175 (8%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
                DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       + 
Sbjct: 9   MNPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDG 62

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
             I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+
Sbjct: 63  KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENV 122

Query: 119 PIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 123 NKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  134 bits (340), Expect = 7e-40
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G+     DF       N  +I+ 
Sbjct: 6   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTIYRNDKRIKL 59

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAG E++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L 
Sbjct: 60  QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V +++          +++E SAK N N ++ F  L   +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  135 bits (341), Expect = 9e-40
 Identities = 53/176 (30%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                 D   FK+V++GD G GK+  + R    EF    + TIGV     +F T      
Sbjct: 5   DYGYDYDL-LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV-----EFATRTLEIE 58

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
             +I+   WDTAGQE++  +   YY     A+I++D++   +Y+N   W  +L     +N
Sbjct: 59  GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN 118

Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + + L GNK D+ + R V  ++  TF ++  L + E SA ++ N +K F  L   +
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  132 bits (335), Expect = 2e-39
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V++GD G GKT+        +    +E          D +      +         D
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE------DVYERTLTVDGEDTTLVVVD 58

Query: 69  TAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
           T   EK      ++     G   +I++ +  R ++++       L R    +++PI+L G
Sbjct: 59  TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D  + R+V  ++        + ++ E SA   +N  + F  + R
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  132 bits (335), Expect = 4e-39
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
              DY  FKL+++G+ G GK+  + R     +   Y  TIGV     DF       +   
Sbjct: 3   SEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV-----DFKIKTVELDGKT 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  
Sbjct: 57  VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+K+ R V+      F     + + E SA  + N E  FL +AR++
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  132 bits (335), Expect = 4e-39
 Identities = 61/177 (34%), Positives = 90/177 (50%), Gaps = 15/177 (8%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
              +  D+  FKLV+VGD   GKT  V+R  TG F ++   TIGV     DF        
Sbjct: 21  DPDEQYDF-LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV-----DFTMKTLEIQ 74

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
             +++   WDTAGQE+F  +   YY     AI+ +D+T R ++ +VP W  D+ +    N
Sbjct: 75  GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN 134

Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           I  +L GNK D+   R+V   +  +     + L   E SAK + N E+ FL +A +L
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (332), Expect = 7e-39
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFT-----NCGKIR 63
           D  +FK+++VGD G GKT  + R   G F    +  T+G+     DF       +  K++
Sbjct: 8   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-----DFRNKVLDVDGVKVK 61

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121

Query: 123 CGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNKVD  + R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  131 bits (332), Expect = 1e-38
 Identities = 52/176 (29%), Positives = 96/176 (54%), Gaps = 15/176 (8%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
           S +  D+   +++I+G  G GKT+ ++R     F +  + T+GV     DF         
Sbjct: 19  SPRPADF-KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV-----DFKIKTVELRG 72

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
            KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+ 
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132

Query: 119 PIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
            ++L GNK+D + +R++  +Q   F ++   +++ E SAK N+N ++ FL L   +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  131 bits (332), Expect = 1e-38
 Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 23/182 (12%)

Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           ++ S ++ +   +++V++G+ G GK+T       +    +   E          D +   
Sbjct: 27  SVISSESGNTY-YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTYERT 79

Query: 58  ------NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL 111
                 +   I    W+  G+ ++  L D     G   +I++ +T R +++        L
Sbjct: 80  LMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQL 137

Query: 112 CRV--CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
            R    E+IPI+L GNK D V+ R+V   +        + ++ E SA   +N ++ F  +
Sbjct: 138 RRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGI 197

Query: 168 AR 169
            R
Sbjct: 198 VR 199

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  129 bits (327), Expect = 5e-38
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
              KL I G  G GK+  V R LT  F  +Y+PT+         +      +   +    
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE------STYRHQATIDDEVVSMEI 80

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L G
Sbjct: 81  LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
           NK D   +RQV  ++      +    +YE SA +   N  + F  L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  129 bits (327), Expect = 5e-38
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)

Query: 2   ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-- 59
           +L  + +     FK++++GD   GKT    R   G F  + E TIGV     DF      
Sbjct: 10  SLVPRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-----DFRERAVD 63

Query: 60  --GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-- 113
             G+ I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P W  +  +  
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123

Query: 114 VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKS---NYNFEKPFLY 166
           +  +IP +L GNK D+++  QV    A++  F    ++  +E SAK+   N + E  F+ 
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMT 181

Query: 167 LARKL 171
           LA KL
Sbjct: 182 LAHKL 186

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  128 bits (325), Expect = 1e-37
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIRFY 65
           +++V++G+ G GK+T              +  +  E    D +         +   I   
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE----DTYERTLMVDGESATIILLD 62

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 123
            W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+L 
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 124 GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  127 bits (321), Expect = 3e-37
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---------EVHPLDFFTNCGKI 62
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G          + + L         
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLI------- 71

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                D  G  +       +       + +F +   ++++ V  +   LC       +P+
Sbjct: 72  ----RDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122

Query: 121 VLCGNKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           VL G +  +     R +   +A++++    K   YYE  A    N E+ F  +A+K
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  126 bits (317), Expect = 7e-37
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S KLV++G+   GK++ V R ++ +F +  EPTIG       F T     N   ++F  W
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-----AFLTQRVTINEHTVKFEIW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY + Q A++++DVT   ++     W ++L     ++I I L GNK
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 127 VDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D       R+V  ++      +K L ++E SAK+  N    FL +  K+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  123 bits (311), Expect = 7e-36
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
           P  +L ++GD  +GK++ + R LTG ++   E T        + +      +        
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES------EQYKKEMLVDGQTHLVLI 58

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 122
            + AG          +       I +F +    +++ V   H  L  +       + + L
Sbjct: 59  REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 123 --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +++   + R V   +        K   YYE  A    N ++ F  +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  122 bits (307), Expect = 4e-35
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFT--------NCGKIR 63
            KL+IVG+ G+GKTT +++ +  +         T+G+     D               + 
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI-----DVKDWPIQIRDKRKRDLV 57

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVL 122
              WD AG+E+F      +       + ++D++        +  W  ++     + P++L
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117

Query: 123 CGNKVDVKNRQVKAKQVT-----FHRKKNLQ-----YYEISAKSNYNFEKPFLYLARKL 171
            G  +DV + + +   ++        K+        ++  + + +    K    +  + 
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  119 bits (300), Expect = 6e-34
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 22/181 (12%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q  ++     L I+G  G GK+    + LT  F  +Y+P +       D ++   
Sbjct: 12  ENLYFQGPLEV---NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE------DTYSSEE 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115
             +   +     DTA  +      + Y       ++++ V +R ++ +  ++   L    
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121

Query: 116 ----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLA 168
                +IP +L GNK+D  + RQV   + V    +    ++E+SA  ++ + +  F    
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

Query: 169 R 169
           R
Sbjct: 182 R 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  118 bits (297), Expect = 1e-33
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 11/165 (6%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+  E           +   + WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD+  
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL-- 139

Query: 132 RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
           R+  +  VT     +L        Y E S+ +     + F     
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  124 bits (313), Expect = 2e-33
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +  V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V         G
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 61  --------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112
                   +  F+ WD  GQE        +       +++ D     T  N   W R + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 113 RVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +     P+++  NK+D   +  ++ K++         +++ IS K+    E     L   
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205

Query: 171 LAGDPNLHFVESPA 184
           +    +++      
Sbjct: 206 VLHPDSIYGTPLAP 219

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  114 bits (288), Expect = 5e-32
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127

Query: 132 ----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
                      +T         +     Y E S+K+  N +  F    +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  111 bits (280), Expect = 4e-31
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQ 66

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                     A  +T  + + L        Y E S+KS  N +  F    R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  110 bits (276), Expect = 3e-30
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           QE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D++
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 131 N--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        ++ K   +T+ +   +       +Y E SA +    +  F
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  109 bits (275), Expect = 4e-30
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT+ V  + T  +  +Y PT   +        +   +R    DTAGQ
Sbjct: 20  GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G + D++ 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159
                    + K K V            K   Y E SA +  N
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  108 bits (271), Expect = 9e-30
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                     +K K +   + + L        Y E SA +    +  F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  109 bits (273), Expect = 1e-29
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                   R+   + VT+HR + +        Y E SA+ + N    F   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  107 bits (270), Expect = 2e-29
 Identities = 49/178 (27%), Positives = 81/178 (45%), Gaps = 17/178 (9%)

Query: 3   LPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
           +P    +     KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++
Sbjct: 15  VPRGSHMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQV 73

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIV 121
               WDTAGQE +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+
Sbjct: 74  ELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPII 133

Query: 122 LCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           L GNK D++          ++K + V     +++        Y E SAK+     + F
Sbjct: 134 LVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  106 bits (266), Expect = 5e-29
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                    +   V++ +  N+        Y E SA  + N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  105 bits (265), Expect = 1e-28
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                  ++K + V     + +        Y E SAK+     + F
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  104 bits (261), Expect = 4e-28
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
             +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++ 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                      +   V++ +  N+        Y E SA  + N
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  103 bits (258), Expect = 6e-28
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 164
                   ++ K   +T+            ++Y E SA +    +  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 99.2 bits (247), Expect = 5e-26
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 17/161 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G 
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSGS 85

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
             +  +R   Y      ++ FD++   T  +    W  ++   C +  ++L G K D++ 
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
                      K   +++ +   +        Y E SA ++
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 88.9 bits (220), Expect = 1e-21
 Identities = 35/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)

Query: 5   SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH---PLDFFTNCGK 61
           S+   D    K+ IV      +T F+           +  T               +  K
Sbjct: 86  SRSLEDCVECKMHIVE-----QTEFIDDQTFQP----HRSTALQPYIKRAAATKLASAEK 136

Query: 62  IRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-- 115
           + ++C D  G E+           +     ++  DV+      + +   +  +L      
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              PIV+   K D    R ++        KKNLQ  E SA+SN N +  F  L + +
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 13  SFKLVIVGDGGTGKTTFVKR-------HLTGE---FEKKYEPTIGVEVHPLDFFTNCG-K 61
           +FK+V  G G +GKTT +K           GE      + E T+  +  PLD     G K
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
            RF+ +   GQ  +   R          + + D        N  +       + E     
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 117 -NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKS 156
            ++PIV+  NK D+ +  +  + V      +      E  A  
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATE 175

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 78.5 bits (193), Expect = 2e-17
 Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 17/172 (9%)

Query: 4   PSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
            +         K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   + 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVN 204

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 122
              WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264

Query: 123 CGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
            G K+D+++        ++ K   +T+ +   +       +Y E SA +   
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 15  KLVIVGDGGTGKTTFVKR---HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           KL+++G  G+GK++       + +    ++   TI VE   L F  N   +    WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 61

Query: 72  QEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLC 123
           Q+ F        +D  +   Q  I +FDV +    K++  + +    L +   +  I + 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 124 GNKVDV----------KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +K+D+          +       + +            ++  + +  K +  +   L  
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI- 180

Query: 174 DPNLHFVES 182
            PN+   +S
Sbjct: 181 -PNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 60.8 bits (147), Expect = 9e-12
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +++++G   +GK++  K              E T  +    +   +    + F  WD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78

Query: 72  QEKFGGL---RDGYYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNK 126
           Q  F       +  +      I + D           +        +V  ++   +  +K
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138

Query: 127 VD 128
           VD
Sbjct: 139 VD 140

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 78

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  + + Y       + M D   +   + +     +L  + +      IP+++ GNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 129 VKN 131
           +  
Sbjct: 136 LPG 138

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L ++ +     +  +++  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 VKN 131
           + N
Sbjct: 142 MPN 144

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE     +PTIG  V  L +      ++   WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY----KNLKLNVWDLGGQT 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY      I + D T +     + T  ++L  + +     +  +++  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VKN 131
              
Sbjct: 131 QPG 133

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VKN 131
           VK 
Sbjct: 129 VKE 131

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +    PT+G  +  L+        +   WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D   R   + +    R+L  +          +++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VKN 131
           +  
Sbjct: 131 LPG 133

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D+
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113

Query: 130 KN 131
            N
Sbjct: 114 PN 115

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  + +      ++F  WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLT 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY +    I + D   R     +     +L  + E        +V+  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VKN 131
           ++ 
Sbjct: 120 MEQ 122

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKT+ + R   G+      PT+GV +  L +      I F  WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D T R     +     +L  + +        +++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VKN 131
           + +
Sbjct: 135 LPD 137

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 76

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VKN 131
           VK 
Sbjct: 134 VKE 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV +G    GKTT +          ++ PT+      L        + F  +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              +   Y       + + D       + +     +L  +       N+PI++ GNK+D 
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 130 KN 131
             
Sbjct: 139 PE 140

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 53.0 bits (128), Expect = 5e-09
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT +K+  + +      PT G  +  +         +   WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K       Y+ +    I + D   R   K      ++L  + E      +P+++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 VKN 131
           +  
Sbjct: 129 LLT 131

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             ++ +G   +GKTT + +      +     PTIG  +           + F  +D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS----SSLSFTVFDMSGQ 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-------NIPIVLCGN 125
            ++  L + YY  GQ  I + D + R     +     +L  +          IPI+   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 126 KVDVKN 131
           K+D+++
Sbjct: 135 KMDLRD 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KL+ +G    GKTT +            +PT       L      G I+F  +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
            +   L   Y+      + + D       +       +L  +       ++P V+ GNK+
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134

Query: 128 DVKN 131
           D  N
Sbjct: 135 DAPN 138

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++      +I           N         D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHES 66

Query: 75  FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGN 125
              LR             ++F V +    + V      L +V  +         +++  N
Sbjct: 67  ---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123

Query: 126 KVDVKN 131
           K D+  
Sbjct: 124 KQDIAM 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.7 bits (105), Expect = 9e-06
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           ++++G    GK++  K  +    +       E T    +           I     +  G
Sbjct: 2   VLLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 72  QEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD----LCRVCENIPIVLCGNK 126
           Q  +     D   +      +++ + ++  Y N  T          +V  +I I +  +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 127 VD 128
           VD
Sbjct: 116 VD 117

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 18/128 (14%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++I G   +GKT+ +    T         +   +     D             D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYD------GSGVTLVDFPGHV 102

Query: 74  KFGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLC 123
           K       Y       +  ++F V + +  K + T    L  +           I I++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 124 GNKVDVKN 131
            NK ++  
Sbjct: 163 CNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++I G   +GKT+ +    T         +   +         +         D  G  K
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA------ADYDGSGVTLVDFPGHVK 67

Query: 75  FGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCG 124
                  Y       +  ++F V + +  K + T    L  +           I I++  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 125 NKVDVKN 131
           NK ++  
Sbjct: 128 NKSELFT 134

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 13  SFKLVIVGDGGTGKTTFV----KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
            F ++ VG+ G GK+T +         GE     +P + ++ +  D   +  +++     
Sbjct: 42  CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101

Query: 69  TAG 71
           T G
Sbjct: 102 TVG 104

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 1   MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +        ++++VG    GKTT + +   GE      PTIG  V  +++     
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----K 207

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---- 116
            I F  WD  GQ+K   L   Y+ + Q  I + D   R   + V     +L R+      
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDEL 264

Query: 117 -NIPIVLCGNKVDVKN 131
            +  +++  NK D+ N
Sbjct: 265 RDAVLLVFANKQDLPN 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.98
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.98
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.98
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.98
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.97
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.97
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.97
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.97
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.97
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.97
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.97
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.97
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.97
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.97
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.97
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.97
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.97
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.97
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.96
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.96
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.96
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.96
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.96
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.96
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.96
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.96
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.96
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.96
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.96
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.96
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.96
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.96
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.95
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.95
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.95
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.95
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.95
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.94
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.94
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.93
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.92
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.92
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.92
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.92
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.92
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.91
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.91
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.91
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.88
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.87
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.86
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.86
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.86
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.85
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.85
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.84
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.84
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.84
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.84
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.84
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.83
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.83
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.82
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.82
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.82
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.82
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.82
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.81
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.81
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.81
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.81
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.81
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.8
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.8
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.8
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.8
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.8
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.79
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.79
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.79
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.77
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.77
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.77
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.76
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.75
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.73
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.73
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.71
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.69
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.68
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.64
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.64
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.63
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.62
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.59
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.58
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.57
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.55
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.55
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.54
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.53
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.51
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.47
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.46
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.45
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.45
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.3
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.25
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.21
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.02
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.02
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.01
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.99
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.99
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.99
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.97
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.96
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.96
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.95
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.94
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.93
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.93
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.92
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.92
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.92
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.91
1g6h_A	257	High-affinity branched-chain amino acid transport	98.91
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.9
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.89
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.89
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.88
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.87
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.87
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.86
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.86
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.83
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.82
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.82
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.81
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.81
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.8
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.76
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.76
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.75
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.71
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.69
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.66
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.65
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.63
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.61
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.6
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.58
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.57
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.57
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.54
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.51
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.49
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.48
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.47
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.46
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.45
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.44
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.43
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.42
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.42
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.42
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.41
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.4
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.4
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.39
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.37
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.36
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.32
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.31
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.28
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.24
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.24
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.15
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.12
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.11
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.06
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.93
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.91
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.9
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.88
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.72
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.7
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.69
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.68
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.68
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.66
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.66
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.64
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.63
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.63
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.62
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.62
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.61
2xxa_A	433	Signal recognition particle protein; protein trans	97.61
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.59
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.59
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.56
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.53
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.49
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.49
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.44
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.42
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.42
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.42
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.41
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.4
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.4
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.4
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.37
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.37
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.32
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.32
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.31
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.3
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.28
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.27
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.27
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.27
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.26
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.26
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.26
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.25
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.23
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.22
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.22
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.21
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.21
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.21
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.21
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.2
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.2
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.19
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.18
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.18
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.17
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.17
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.16
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.16
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.16
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.15
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.15
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.13
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.12
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.11
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.11
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.11
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.09
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.09
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.08
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.07
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.06
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.06
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.05
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.05
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.05
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.05
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.04
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.04
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.03
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.02
2og2_A	359	Putative signal recognition particle receptor; nuc	97.02
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.01
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.01
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.0
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.0
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.0
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.99
1via_A	175	Shikimate kinase; structural genomics, transferase	96.98
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.98
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.96
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.96
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.96
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.96
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.94
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.94
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.94
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.92
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.91
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.9
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.9
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.88
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.87
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.87
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.86
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.86
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.85
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.85
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.84
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.84
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.83
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.82
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.82
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.8
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.79
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.78
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.78
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.76
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.76
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.76
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.74
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.74
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.74
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.72
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.72
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.71
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.71
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.7
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.7
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.69
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.68
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.66
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.64
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.63
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.62
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.61
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.6
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.59
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.58
3bos_A	242	Putative DNA replication factor; P-loop containing	96.55
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.54
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.54
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.54
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.54
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.52
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.52
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.47
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.46
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.43
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.42
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.4
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.37
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.37
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.35
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.34
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.31
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.29
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.28
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.28
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.26
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.25
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.23
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.23
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.23
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.23
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.22
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.22
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.19
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.18
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.16
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.16
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.12
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.12
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.11
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.07
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.06
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.04
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.02
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.99
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.99
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.97
3co5_A	143	Putative two-component system transcriptional RES	95.96
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.96
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	95.94
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.93
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.92
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.91
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.91
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.91
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.9
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.89
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.87
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.87
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.85
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.84

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=3.3e-37  Score=231.27  Aligned_cols=213  Identities=76%  Similarity=1.227  Sum_probs=188.7

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      ++....+.+||+|+|.+|||||||+++|+.+.+...+.++.|.+.......+.+..+.+.+|||||++.+...+..+++.
T Consensus         8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   87 (221)
T 3gj0_A            8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ   87 (221)
T ss_dssp             STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred             cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence            34456788999999999999999999988888888888999999999999999999999999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++++++|||+++..+|..+..|+..+....++.|+++|+||+|+.+.....+...++...+++++++||++|.|++++|.
T Consensus        88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  167 (221)
T 3gj0_A           88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFL  167 (221)
T ss_dssp             CCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999999999999999888889999999999999876666666677888899999999999999999999


Q ss_pred             HHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027593          166 YLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD  218 (221)
Q Consensus       166 ~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      +|.+.+...+.......|...+++...+....++....++..+...++++|||
T Consensus       168 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (221)
T 3gj0_A          168 WLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD  220 (221)
T ss_dssp             HHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence            99999999999988899999999999999999999999999999999888776

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=8.8e-37  Score=227.50  Aligned_cols=174  Identities=29%  Similarity=0.524  Sum_probs=138.2

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      |+-..+...++++|||+|+|.+|||||||+++|+.+.+...+.+|.|.++......+++..+.+.+|||+|+++|...+.
T Consensus         1 ms~~~~~~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~   80 (216)
T 4dkx_A            1 MSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIP   80 (216)
T ss_dssp             ------------CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHH
T ss_pred             CCCCCCCCCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHH
Confidence            56666667788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      .|++.++++++|||+++..+|.++..|+..+.... ++.|++||+||+|+.+ +.+.. +..+++...++.|+++||++|
T Consensus        81 ~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg  160 (216)
T 4dkx_A           81 SYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAG  160 (216)
T ss_dssp             HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTT
T ss_pred             HHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCC
Confidence            99999999999999999999999999999887764 6799999999999975 44444 455788899999999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 027593          158 YNFEKPFLYLARKLAGD  174 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~  174 (221)
                      .|++++|..|++.+...
T Consensus       161 ~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          161 YNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             BSHHHHHHHHHHHC---
T ss_pred             cCHHHHHHHHHHHHHhh
Confidence            99999999999987643

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.2e-31  Score=193.45  Aligned_cols=172  Identities=33%  Similarity=0.566  Sum_probs=150.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999888888888999888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+....  .+.|+++|+||+|+..+.... +...++...+++++++||+++.|++++|.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887654  478999999999997655443 445677788899999999999999999999


Q ss_pred             HHHHHhCCCCCcccc
Q 027593          167 LARKLAGDPNLHFVE  181 (221)
Q Consensus       167 l~~~l~~~~~~~~~~  181 (221)
                      |.+.+...+..+..+
T Consensus       172 l~~~~~~~~~~~~~~  186 (195)
T 1x3s_A          172 LVEKIIQTPGLWESE  186 (195)
T ss_dssp             HHHHHHTSGGGTCC-
T ss_pred             HHHHHHhhhhhhccc
Confidence            999998876655433

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.98  E-value=3.2e-31  Score=197.76  Aligned_cols=169  Identities=20%  Similarity=0.340  Sum_probs=140.8

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ....++.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+...+..+++.+
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34567789999999999999999999999998888888888766 45666777889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcCc-eEE
Q 027593           87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKNL-QYY  150 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~~-~~~  150 (221)
                      +++++|||+++..+|.. +..|+..+....++.|+++|+||+|+..             +.+.. +...++...++ +++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            99999999999999998 6899999988888999999999999965             23333 34577888888 999


Q ss_pred             EeecCCCCC-hHHHHHHHHHHHhCCCC
Q 027593          151 EISAKSNYN-FEKPFLYLARKLAGDPN  176 (221)
Q Consensus       151 ~~s~~~~~~-i~~~~~~l~~~l~~~~~  176 (221)
                      ++||++|.| ++++|..|++.+...+.
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999999876553

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.98  E-value=8e-31  Score=190.71  Aligned_cols=168  Identities=32%  Similarity=0.524  Sum_probs=142.9

Q ss_pred             CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc
Q 027593            5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (221)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   84 (221)
                      .......+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++
T Consensus        10 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   88 (183)
T 3kkq_A           10 AVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR   88 (183)
T ss_dssp             ----CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH
T ss_pred             cCCccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh
Confidence            3344567799999999999999999999998888877788887666 666777888899999999999999999999999


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecC-CCCC
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAK-SNYN  159 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~-~~~~  159 (221)
                      .+|++++|+|++++.+|..+..|...+....  .+.|+++|+||+|+.+ +.... +...++...+++++++||+ ++.|
T Consensus        89 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~  168 (183)
T 3kkq_A           89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLN  168 (183)
T ss_dssp             HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBS
T ss_pred             cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCC
Confidence            9999999999999999999999988886643  5789999999999865 33333 3457778888999999999 9999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      ++++|..|.+.+.+
T Consensus       169 v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          169 VDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh
Confidence            99999999998753

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.98  E-value=1.3e-30  Score=186.70  Aligned_cols=163  Identities=31%  Similarity=0.601  Sum_probs=143.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+++|++|||||||+++|+.+.+...+.++.+.++......+++....+.+|||||+..+...+..++..+++++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988888777888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      +|+|+++..++..+..|+..+.....+.|+++|+||+|+... ... .+...++...+++++++|++++.|++++|.+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999999988777678999999999998653 333 334467777889999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T 1z2a_A          163 EKHLQ  167 (168)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98764

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.97  E-value=2.3e-30  Score=187.20  Aligned_cols=166  Identities=31%  Similarity=0.622  Sum_probs=140.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++..++++
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   83 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   83 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence            44679999999999999999999998888877888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHH-HHHHHH-hcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~-~~~~~~-~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..++..+..|...+....     .+.|+++|+||+|+..+....+ ...++. ..+++++++||++|.|+++
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  163 (177)
T 1wms_A           84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  163 (177)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999998887654     5789999999999975544443 335555 5678999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027593          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|.+|.+.+...+
T Consensus       164 l~~~l~~~~~~~~  176 (177)
T 1wms_A          164 AFEEAVRRVLATE  176 (177)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhhc
Confidence            9999999887643

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.97  E-value=2.4e-30  Score=187.59  Aligned_cols=164  Identities=32%  Similarity=0.557  Sum_probs=143.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..++..+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            34679999999999999999999888888777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ++|+|++++.++..+..|+..+....++.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|.+|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI  165 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            99999999999999999999998887889999999999987533 23 34456777888999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       166 ~~~~~~  171 (181)
T 3tw8_B          166 TELVLR  171 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1.1e-30  Score=187.40  Aligned_cols=162  Identities=33%  Similarity=0.590  Sum_probs=141.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ++.+||+++|++|||||||+++++.+.+...+.++.+.++......+++....+.+|||||+..+...+..+++.+|+++
T Consensus         1 v~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i   80 (170)
T 1ek0_A            1 VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAAL   80 (170)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence            46799999999999999999999988888778889998888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc----cccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~----~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+...    .... +...++...+++++++||++|.|++++|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  160 (170)
T 1ek0_A           81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF  160 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred             EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999998887764 57899999999998642    2332 3446667778999999999999999999


Q ss_pred             HHHHHHHh
Q 027593          165 LYLARKLA  172 (221)
Q Consensus       165 ~~l~~~l~  172 (221)
                      .+|.+.+.
T Consensus       161 ~~l~~~i~  168 (170)
T 1ek0_A          161 LGIGEKIP  168 (170)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHHHh
Confidence            99987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.97  E-value=1.6e-30  Score=186.55  Aligned_cols=163  Identities=33%  Similarity=0.597  Sum_probs=143.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.+||+++|++|+|||||+++|+.+.+...+.++.+.++......+.+....+.+||+||+..+...+..++..++++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            45679999999999999999999998888887888999888888888888899999999999999999889999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|++++.++..+..|+..+.... +..|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988887663 57899999999998653 333 3445677778899999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            998654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.97  E-value=2.5e-30  Score=185.70  Aligned_cols=163  Identities=29%  Similarity=0.532  Sum_probs=136.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|+|||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            45799999999999999999999988887777888888888778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876654 57899999999999653 3333 4456777788999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.97  E-value=8.3e-31  Score=193.69  Aligned_cols=167  Identities=34%  Similarity=0.539  Sum_probs=136.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus        25 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (201)
T 2hup_A           25 QYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANG  104 (201)
T ss_dssp             -CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCE
Confidence            34557999999999999999999999888877777788877777778888888999999999999999888999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCc-eEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~-~~~~~s~~~~~~i~~~~  164 (221)
                      +++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... +..+++...++ +++++||++|.|++++|
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  184 (201)
T 2hup_A          105 AILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAF  184 (201)
T ss_dssp             EEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887765 5799999999999975 33333 34567777888 99999999999999999


Q ss_pred             HHHHHHHhCCC
Q 027593          165 LYLARKLAGDP  175 (221)
Q Consensus       165 ~~l~~~l~~~~  175 (221)
                      .+|.+.+....
T Consensus       185 ~~l~~~i~~~~  195 (201)
T 2hup_A          185 LRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999886543

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.97  E-value=4e-30  Score=188.87  Aligned_cols=165  Identities=25%  Similarity=0.411  Sum_probs=142.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+++|.+|+|||||+++|+.+.+...+.++.+.++.. ...+++..+.+.+|||||++.+...+..+++.++++
T Consensus        20 ~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   98 (194)
T 3reg_A           20 GKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVV   98 (194)
T ss_dssp             -CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEE
Confidence            4567999999999999999999999998877778888766654 566788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCc---ccccH-HHHHHHHhcCce-EEEeecCCCCChHHH
Q 027593           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKKNLQ-YYEISAKSNYNFEKP  163 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~---~~~~~-~~~~~~~~~~~~-~~~~s~~~~~~i~~~  163 (221)
                      ++|+|+++..+|..+ ..|...+....++.|+++|+||+|+..   +.... +...++...++. ++++||++|.|++++
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  178 (194)
T 3reg_A           99 LLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEV  178 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHH
Confidence            999999999999997 678888887778899999999999864   23333 345677778887 999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 027593          164 FLYLARKLAGDP  175 (221)
Q Consensus       164 ~~~l~~~l~~~~  175 (221)
                      |.+|.+.+...+
T Consensus       179 ~~~l~~~i~~~~  190 (194)
T 3reg_A          179 FEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHHHHHHCSC
T ss_pred             HHHHHHHHHhcC
Confidence            999999987654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.97  E-value=3.5e-30  Score=184.86  Aligned_cols=163  Identities=28%  Similarity=0.512  Sum_probs=143.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+++|++|+|||||+++++.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..++++
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~   82 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   82 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence            35679999999999999999999999888888888999998888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+... .+..|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~  162 (170)
T 1z0j_A           83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence            9999999999999999998888776 467899999999999753 3333 344667778899999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       163 i~~~i~  168 (170)
T 1z0j_A          163 ISRRIP  168 (170)
T ss_dssp             HHHHCC
T ss_pred             HHHHHh
Confidence            998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.97  E-value=2.9e-30  Score=187.28  Aligned_cols=166  Identities=34%  Similarity=0.543  Sum_probs=143.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|++|+|||||+++|+.+.+.....++.+.++......+.+....+.+|||||+..+...+..+++.+++
T Consensus         8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   87 (181)
T 2efe_B            8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA   87 (181)
T ss_dssp             --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred             CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence            45678999999999999999999999888887777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +++|+|+++..++..+..|+..+.... ++.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.
T Consensus        88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~  167 (181)
T 2efe_B           88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY  167 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence            999999999999999999998887764 5789999999999964 33333 34567777889999999999999999999


Q ss_pred             HHHHHHhCC
Q 027593          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+...
T Consensus       168 ~l~~~~~~~  176 (181)
T 2efe_B          168 EIARRLPRV  176 (181)
T ss_dssp             HHHHTCC--
T ss_pred             HHHHHHHhc
Confidence            999876543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.97  E-value=2.5e-30  Score=185.64  Aligned_cols=163  Identities=28%  Similarity=0.549  Sum_probs=137.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..++..++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            46899999999999999999999888877777888877877778888888999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |+|+++..++..+..|+..+.... .+.|+++|+||+|+..+....+ ...++...+++++++||++|.|++++|.+|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998887765 5789999999999965544443 44667778899999999999999999999999


Q ss_pred             HHhCC
Q 027593          170 KLAGD  174 (221)
Q Consensus       170 ~l~~~  174 (221)
                      .+..+
T Consensus       162 ~~~~~  166 (170)
T 1g16_A          162 LIQEK  166 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            88643

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.97  E-value=1.2e-29  Score=185.48  Aligned_cols=164  Identities=26%  Similarity=0.522  Sum_probs=144.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..++++
T Consensus        19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   98 (189)
T 2gf9_A           19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF   98 (189)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred             cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence            34569999999999999999999998888777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+
T Consensus        99 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  178 (189)
T 2gf9_A           99 LLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFER  178 (189)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999998887764 57999999999999653 3333 345677778899999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+.+
T Consensus       179 l~~~i~~  185 (189)
T 2gf9_A          179 LVDVICE  185 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.97  E-value=4e-30  Score=186.10  Aligned_cols=163  Identities=33%  Similarity=0.539  Sum_probs=143.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..+++++
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   92 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL   92 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEE
Confidence            45799999999999999999999988888778888888888888888888899999999999999988899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +..+++...+++++++||++|.|++++|.+|
T Consensus        93 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  172 (179)
T 1z0f_A           93 MVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEA  172 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887765 58899999999999643 3333 4456777788999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+.+
T Consensus       173 ~~~i~~  178 (179)
T 1z0f_A          173 AKKIYQ  178 (179)
T ss_dssp             HHHHC-
T ss_pred             HHHHhh
Confidence            998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.97  E-value=6.3e-30  Score=187.39  Aligned_cols=165  Identities=32%  Similarity=0.544  Sum_probs=140.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   96 (191)
T 2a5j_A           17 RGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAG   96 (191)
T ss_dssp             TTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSE
T ss_pred             ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCE
Confidence            45668999999999999999999999888877777788888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||+++.|++++|.
T Consensus        97 ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  176 (191)
T 2a5j_A           97 ALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFI  176 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887764 58999999999999652 3333 34567777889999999999999999999


Q ss_pred             HHHHHHhC
Q 027593          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      +|.+.+.+
T Consensus       177 ~l~~~i~~  184 (191)
T 2a5j_A          177 NTAKEIYR  184 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.97  E-value=7.9e-30  Score=187.35  Aligned_cols=165  Identities=30%  Similarity=0.550  Sum_probs=146.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   92 (196)
T 3tkl_A           13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGI   92 (196)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEE
T ss_pred             cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEE
Confidence            34579999999999999999999999888888888999889888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus        93 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~  172 (196)
T 3tkl_A           93 IVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMT  172 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887764 47899999999998653 333 3445677888999999999999999999999


Q ss_pred             HHHHHhCC
Q 027593          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |.+.+...
T Consensus       173 l~~~i~~~  180 (196)
T 3tkl_A          173 MAAEIKKR  180 (196)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.6e-30  Score=189.67  Aligned_cols=164  Identities=29%  Similarity=0.501  Sum_probs=144.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..++..+++++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999988887788899999998888888888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+.. +.... +..+++...+++++++||+++.|++++|.+|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999999999998887764 4789999999999965 33333 4456777788999999999999999999999


Q ss_pred             HHHHhCC
Q 027593          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       181 ~~~i~~~  187 (192)
T 2fg5_A          181 SRQIPPL  187 (192)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhh
Confidence            9976543

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.97  E-value=4.8e-30  Score=187.50  Aligned_cols=163  Identities=21%  Similarity=0.342  Sum_probs=135.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .+.+.+||+|+|.+|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+... ..+++.+++
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            456789999999999999999999999988888888888665 445677888899999999999988775 678899999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeec-CCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISA-KSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~-~~~~~i~  161 (221)
                      +++|||+++..+|..+..|+..+....    .+.|+++|+||+|+.. +.+.. +..+++...+++++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999998887664    6899999999999965 33333 445777888999999999 8999999


Q ss_pred             HHHHHHHHHHhC
Q 027593          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|..|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=4.7e-30  Score=189.63  Aligned_cols=163  Identities=34%  Similarity=0.605  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            34699999999999999999999999888888888888888888888888899999999999999988899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887764 4789999999999964 33333 3445667778999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++.+..
T Consensus       184 ~~~i~~  189 (201)
T 2ew1_A          184 ACRLIS  189 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.97  E-value=8e-30  Score=185.11  Aligned_cols=164  Identities=25%  Similarity=0.334  Sum_probs=142.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||||++.+...+..+++.+++++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            4579999999999999999999998888888888888777 666778888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||+++..++..+..|...+....  .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|..
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886664  4789999999999864 33333 445778888999999999999999999999


Q ss_pred             HHHHHhCCC
Q 027593          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |.+.+....
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.97  E-value=2.5e-30  Score=187.12  Aligned_cols=166  Identities=27%  Similarity=0.469  Sum_probs=140.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC-eEEEEEEEeCCCcccccccccccccCccE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .++.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ....+.+|||||++.+...+..++..+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            45789999999999999999999998887766677887777777777766 57899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc---CCCC-EEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +++|+|++++.++..+..|+..+....   ...| +++|+||+|+.. +.... +...++...+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999988876643   2555 799999999975 33333 34466777789999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027593          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|.+|.+.+...+
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=6e-30  Score=183.10  Aligned_cols=163  Identities=29%  Similarity=0.527  Sum_probs=136.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +|+.+||+++|++|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||+..+...+..++..++++
T Consensus         1 S~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~   79 (168)
T 1u8z_A            1 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF   79 (168)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEE
Confidence            46789999999999999999999998887777777776554 34556778889999999999999888889999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++|+|+++..++..+..|...+.....  +.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus        80 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (168)
T 1u8z_A           80 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFF  159 (168)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence            999999999999999999888877654  8999999999999653 3333 44566777789999999999999999999


Q ss_pred             HHHHHHhC
Q 027593          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      +|.+.+.+
T Consensus       160 ~l~~~i~~  167 (168)
T 1u8z_A          160 DLMREIRA  167 (168)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=8.2e-30  Score=182.43  Aligned_cols=161  Identities=32%  Similarity=0.560  Sum_probs=136.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |+.+||+++|++|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||||+..+...+..++..+++++
T Consensus         1 m~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   79 (167)
T 1c1y_A            1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999999988887777777775543 45667778899999999999999999899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhc-CceEEEeecCCCCChHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +|+|++++.++..+..|...+....  .+.|+++|+||+|+.+. .... +...++... +.+++++||++|.|++++|.
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  159 (167)
T 1c1y_A           80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence            9999999999999999988887653  58999999999999653 2333 334556665 78999999999999999999


Q ss_pred             HHHHHHh
Q 027593          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      +|.+.+.
T Consensus       160 ~l~~~i~  166 (167)
T 1c1y_A          160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=8.3e-30  Score=185.58  Aligned_cols=165  Identities=27%  Similarity=0.480  Sum_probs=139.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +++.++|+++|++|+|||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            46789999999999999999999998888777777776444 44567788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEee
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s  153 (221)
                      ++|+|++++.++..+. .|...+....++.|+++|+||+|+...             .+.. +...++...+. +++++|
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            9999999999999887 788888877778999999999998642             1222 33456666776 999999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      |++|.|++++|.+|.+.+...+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999886544

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.7e-29  Score=183.11  Aligned_cols=166  Identities=28%  Similarity=0.556  Sum_probs=135.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ...+.++|+|+|++|+|||||+++|+.+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..++..++
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   85 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAH   85 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCS
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCC
Confidence            3456799999999999999999999888774 356678888887777788888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||+++.|++++|
T Consensus        86 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  165 (180)
T 2g6b_A           86 ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF  165 (180)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887765 57899999999999753 3333 3446677778999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027593          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      .+|.+.+...
T Consensus       166 ~~l~~~~~~~  175 (180)
T 2g6b_A          166 TAIAKELKRR  175 (180)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            9999988654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7e-30  Score=191.64  Aligned_cols=177  Identities=29%  Similarity=0.483  Sum_probs=137.6

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      |.-+.......+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+.
T Consensus         1 Ms~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~   80 (223)
T 3cpj_B            1 MSSEDYGYDYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITS   80 (223)
T ss_dssp             ---------CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCG
T ss_pred             CCccccCCCCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHH
Confidence            33333333345679999999999999999999998888777778888888888888888889999999999999999999


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      .+++.++++++|||+++..+|..+..|+..+.... .+.|+++|+||+|+.. +.+.. +...++...+++++++||+++
T Consensus        81 ~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  160 (223)
T 3cpj_B           81 AYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNS  160 (223)
T ss_dssp             GGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-C
T ss_pred             HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            99999999999999999999999999998887764 4789999999999965 33333 345677778899999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCC
Q 027593          158 YNFEKPFLYLARKLAGDPNL  177 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~  177 (221)
                      .|++++|.+|.+.+......
T Consensus       161 ~gi~~l~~~l~~~i~~~~~~  180 (223)
T 3cpj_B          161 ENVDKAFEELINTIYQKVSK  180 (223)
T ss_dssp             CCHHHHHHHHHHHHTTCC--
T ss_pred             CCHHHHHHHHHHHHHHHhhh
Confidence            99999999999998875543

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=190.80  Aligned_cols=166  Identities=27%  Similarity=0.513  Sum_probs=131.8

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++....+.+|||||++.+...+..++..+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            34556899999999999999999999988887777888888888888888888899999999999999888888999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-------ccccH-HHHHHHHhcCceEEEeecCCCC
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQVKA-KQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-------~~~~~-~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++++|+|+++..++..+..|+..+.... .+.|+++|+||+|+..       +.+.. +...++...+++++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            9999999999999999999988887654 4789999999999852       22333 3346677778999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027593          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~  173 (221)
                      |++++|.+|.+.+.+
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=5.9e-30  Score=186.58  Aligned_cols=162  Identities=21%  Similarity=0.395  Sum_probs=134.1

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .....++.+||+|+|++|||||||+++|+.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.+.     +++.
T Consensus        13 ~~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~   85 (184)
T 3ihw_A           13 NLYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAW   85 (184)
T ss_dssp             ---CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHH
T ss_pred             CCCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecC
Confidence            344577899999999999999999999999988777766633 33 4677888888999999999998766     7888


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCC---cccccH-HHHHHHHhcC-ceEEEeecCCCC
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVKA-KQVTFHRKKN-LQYYEISAKSNY  158 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~---~~~~~~-~~~~~~~~~~-~~~~~~s~~~~~  158 (221)
                      ++++++|||+++..+|..+..|+..+....  .+.|+++|+||+|+.   .+.+.. +...++...+ +.++++||++|.
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~  165 (184)
T 3ihw_A           86 VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGL  165 (184)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTB
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCC
Confidence            999999999999999999999999887763  478999999999984   233333 3446777776 899999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 027593          159 NFEKPFLYLARKLAGD  174 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~  174 (221)
                      |++++|.+|++.+...
T Consensus       166 gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          166 NVERVFQDVAQKVVAL  181 (184)
T ss_dssp             THHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999987643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=1.7e-29  Score=187.16  Aligned_cols=165  Identities=35%  Similarity=0.645  Sum_probs=142.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+|+|++|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||+..+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45679999999999999999999998888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHH-HHHHHH-hcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHR-KKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~-~~~~~~-~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|++++.++..+..|+..+....     .+.|+++|+||+|+..+....+ ...++. ..+++++++||++|.|+++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999988876654     4789999999999985544443 334554 5678999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027593          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|.+|.+.+...
T Consensus       165 l~~~l~~~~~~~  176 (207)
T 1vg8_A          165 AFQTIARNALKQ  176 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.2e-29  Score=186.24  Aligned_cols=162  Identities=24%  Similarity=0.372  Sum_probs=138.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+++|++|+|||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.++++
T Consensus        15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~   93 (194)
T 2atx_A           15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   93 (194)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence            34679999999999999999999998888777777776554 34566677789999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEee
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s  153 (221)
                      ++|||++++.+|..+. .|+..+....++.|+++|+||+|+...             .... +...++...++ +++++|
T Consensus        94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  173 (194)
T 2atx_A           94 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  173 (194)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEee
Confidence            9999999999999987 788888887778999999999999653             2222 34466667777 899999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 027593          154 AKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~  172 (221)
                      |++|.|++++|.+|.+.+.
T Consensus       174 a~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          174 ALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999875

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=6.6e-30  Score=184.92  Aligned_cols=165  Identities=29%  Similarity=0.550  Sum_probs=142.0

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ..+++.++|+|+|++|||||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||||+..+...+..++..++
T Consensus         9 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d   88 (179)
T 2y8e_A            9 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDST   88 (179)
T ss_dssp             ---CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCS
T ss_pred             cCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCC
Confidence            34577899999999999999999999988888777888888888888888888899999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++++|+|++++.++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|
T Consensus        89 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~  168 (179)
T 2y8e_A           89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF  168 (179)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence            9999999999999999999988887654 47899999999998653 333 33446667778999999999999999999


Q ss_pred             HHHHHHHh
Q 027593          165 LYLARKLA  172 (221)
Q Consensus       165 ~~l~~~l~  172 (221)
                      .+|.+.+.
T Consensus       169 ~~l~~~~~  176 (179)
T 2y8e_A          169 RRVAAALP  176 (179)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHHHHh
Confidence            99988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=7.7e-30  Score=185.87  Aligned_cols=163  Identities=24%  Similarity=0.408  Sum_probs=137.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            45679999999999999999999998888777777877655 34566777889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccHH-HHHHHHhcC-ceEEEee
Q 027593           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~~-~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||++++.+|..+ ..|...+....++.|+++|+||+|+...             .+..+ ...++...+ .+++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999988 6888888777778999999999999642             23333 345666666 7999999


Q ss_pred             cC-CCCChHHHHHHHHHHHhC
Q 027593          154 AK-SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~-~~~~i~~~~~~l~~~l~~  173 (221)
                      |+ ++.|++++|..+.+.+..
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            99 689999999999998764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=6.3e-30  Score=187.07  Aligned_cols=165  Identities=30%  Similarity=0.554  Sum_probs=138.8

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-ccccccccCc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHG   86 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~   86 (221)
                      ...++.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+. ..+..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            345678999999999999999999999888888788888888888888888888999999999999887 7888889999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCC---CC
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSN---YN  159 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~---~~  159 (221)
                      +++++|+|+++..++..+..|...+....  .+.|+++|+||+|+... .... +...++...+++++++|++++   .+
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            99999999999999999999999887764  57999999999999653 3333 344677778899999999999   99


Q ss_pred             hHHHHHHHHHHHh
Q 027593          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 i~~~~~~l~~~l~  172 (221)
                      ++++|.+|++.+.
T Consensus       175 i~~l~~~l~~~i~  187 (189)
T 1z06_A          175 VEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=185.64  Aligned_cols=164  Identities=29%  Similarity=0.514  Sum_probs=143.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..++++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34579999999999999999999998888777788888888888888888899999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988887654 57899999999999653 333 3345667778899999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+..
T Consensus       182 l~~~i~~  188 (193)
T 2oil_A          182 VLKEIFA  188 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=3.3e-30  Score=187.45  Aligned_cols=163  Identities=29%  Similarity=0.558  Sum_probs=114.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+++++
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   85 (183)
T 2fu5_C            6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM   85 (183)
T ss_dssp             SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence            35799999999999999999998888777667778887887777888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|++++.+|..+..|+..+.... .+.|+++|+||+|+.+. .... +...++...+++++++||++|.|++++|.+|
T Consensus        86 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  165 (183)
T 2fu5_C           86 LVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTL  165 (183)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887763 57899999999999753 3333 3456777788999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       166 ~~~i~~  171 (183)
T 2fu5_C          166 ARDIKA  171 (183)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=2.1e-29  Score=186.69  Aligned_cols=164  Identities=29%  Similarity=0.538  Sum_probs=144.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            45799999999999999999999998888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  165 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  165 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887764 57899999999999753 3333 3446677788999999999999999999999


Q ss_pred             HHHHhCC
Q 027593          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       166 ~~~i~~~  172 (206)
T 2bcg_Y          166 ARQIKES  172 (206)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=5.4e-30  Score=191.50  Aligned_cols=175  Identities=46%  Similarity=0.830  Sum_probs=145.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccccccccccCcc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      .....+||+|+|.+|||||||+++|+.+.+...+.++.+.+..........+ .+.+.+|||||++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            4567899999999999999999998888887777888888777776665544 489999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++++|+|+++..++..+..|+..+..... +.|+++|+||+|+... ....+ ...++...+++++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999988877654 5899999999999764 33333 336677788999999999999999999


Q ss_pred             HHHHHHHhCCCCCccccCC
Q 027593          165 LYLARKLAGDPNLHFVESP  183 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~ep  183 (221)
                      .+|.+.+...+.......+
T Consensus       167 ~~l~~~~~~~~~~~~~~~~  185 (218)
T 4djt_A          167 LHLARIFTGRPDLIFVSNV  185 (218)
T ss_dssp             HHHHHHHHCCTTCCBCSCC
T ss_pred             HHHHHHHhccccccccccc
Confidence            9999999887665544333

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=1.4e-29  Score=187.17  Aligned_cols=162  Identities=27%  Similarity=0.545  Sum_probs=143.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..++++++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            46999999999999999999999888877778888988888888888889999999999999998888999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.+|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998887765 57999999999999753 3333 34467777789999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       167 ~~i~~  171 (203)
T 1zbd_A          167 DVICE  171 (203)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=9.7e-30  Score=189.32  Aligned_cols=165  Identities=27%  Similarity=0.450  Sum_probs=138.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.+||+|+|++|+|||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus         6 ~~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   84 (212)
T 2j0v_A            6 VSKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF   84 (212)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence            35679999999999999999999998888777777777554 34566777889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc----------ccHHHHHHHHhcCc-eEEEeecCCC
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      ++|||++++.+|..+. .|+..+....++.|+++|+||+|+....          ...+...++...+. +++++||++|
T Consensus        85 ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g  164 (212)
T 2j0v_A           85 VLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQ  164 (212)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence            9999999999999986 7988888777789999999999986532          12234456677775 9999999999


Q ss_pred             CChHHHHHHHHHHHhCCC
Q 027593          158 YNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~  175 (221)
                      .|++++|.+|.+.+....
T Consensus       165 ~gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          165 QNVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             TTHHHHHHHHHHHHHCC-
T ss_pred             CCHHHHHHHHHHHHhhhh
Confidence            999999999999987654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=1.7e-29  Score=184.05  Aligned_cols=164  Identities=32%  Similarity=0.588  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999988888777888888888888888888899999999999999888899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|++++|.+|
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988877654 5789999999999964 3333 34456777888999999999999999999999


Q ss_pred             HHHHhCC
Q 027593          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       168 ~~~~~~~  174 (186)
T 2bme_A          168 ARKILNK  174 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=9.3e-30  Score=187.19  Aligned_cols=168  Identities=24%  Similarity=0.310  Sum_probs=133.3

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-cccccccC
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIH   85 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~   85 (221)
                      +....+.+||+|+|++|||||||+++|+.........++.+.+.....+.+++..+.+.+|||+|+..+.. .+..+++.
T Consensus        17 ~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~   96 (195)
T 3cbq_A           17 QGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT   96 (195)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHH
T ss_pred             CCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhcc
Confidence            34456789999999999999999999754333323334455555566677888889999999999987654 66777889


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      ++++++|||++++.+|..+..|+..+....  .+.|+++|+||+|+.. +.+.. +...++...+++++++||++|.|++
T Consensus        97 ~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~  176 (195)
T 3cbq_A           97 GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR  176 (195)
T ss_dssp             CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHH
Confidence            999999999999999999999998887654  4799999999999975 33333 3446777788999999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 027593          162 KPFLYLARKLAGD  174 (221)
Q Consensus       162 ~~~~~l~~~l~~~  174 (221)
                      ++|.+|++.+...
T Consensus       177 ~lf~~l~~~i~~~  189 (195)
T 3cbq_A          177 ELFEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988653

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=1.5e-29  Score=181.51  Aligned_cols=161  Identities=24%  Similarity=0.310  Sum_probs=124.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-cccccccCccEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i~   91 (221)
                      .+||+++|++|||||||+++|+.+........+.+.+.......+++..+.+.+||++|+..+.. .+..+++.++++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999876666555555566666777777888899999999999988876 66777889999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |||++++.+|..+..|...+.....  +.|+++|+||+|+.+ +.... +...++...+++++++||++|.|++++|.+|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654  899999999999974 33343 3446778889999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.1e-29  Score=187.52  Aligned_cols=163  Identities=31%  Similarity=0.583  Sum_probs=133.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||+..+...+..++..+++++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45799999999999999999999988887777788887887778888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.+|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988887654 57999999999999643 333 34456777888999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       183 ~~~i~~  188 (200)
T 2o52_A          183 ARTILN  188 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998865

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=2.4e-29  Score=185.64  Aligned_cols=165  Identities=25%  Similarity=0.377  Sum_probs=130.4

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ....+.++|+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++.+++
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3456789999999999999999999998887777777776444 445667778889999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEE
Q 027593           88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYE  151 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~  151 (221)
                      ++++|||++++.+|..+. .|+..+....++.|+++|+||+|+...             .+.. +...++...+. ++++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999987 798888887778999999999998642             2222 34456666676 9999


Q ss_pred             eecCCCCChHHHHHHHHHHHhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|.+|.+.+..
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=3.3e-29  Score=178.77  Aligned_cols=162  Identities=28%  Similarity=0.517  Sum_probs=137.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |+.++|+++|++|||||||+++++.+.+...+.++.+... .....+++..+.+.+||+||+..+...+..++..+++++
T Consensus         1 m~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i   79 (166)
T 2ce2_X            1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEE
Confidence            4679999999999999999999988877766666665433 445667778899999999999988888888999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|...+.....  +.|+++|+||+|+..+.... +...++...+++++++|+++|.|+++++.+|
T Consensus        80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  159 (166)
T 2ce2_X           80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            99999999999999999888877654  79999999999997644433 3456777788999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+.+
T Consensus       160 ~~~~~~  165 (166)
T 2ce2_X          160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=188.60  Aligned_cols=165  Identities=28%  Similarity=0.508  Sum_probs=119.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..++++
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~  109 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL  109 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEE
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence            45679999999999999999999988887766666665443 44567788889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEee
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s  153 (221)
                      ++|||+++..+|..+. .|...+....++.|+++|+||+|+....             +.. +...++...++ +++++|
T Consensus       110 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  189 (214)
T 2j1l_A          110 LLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECS  189 (214)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECB
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEec
Confidence            9999999999999986 7888888777789999999999996532             222 23456667777 999999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      |++|.|++++|.+|.+.+...+
T Consensus       190 A~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          190 ARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             TTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999887543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=9.8e-30  Score=186.57  Aligned_cols=165  Identities=28%  Similarity=0.563  Sum_probs=135.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|.+|+|||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..++..+|+
T Consensus        22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  101 (192)
T 2il1_A           22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKG  101 (192)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSE
T ss_pred             ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCE
Confidence            34567999999999999999999988888777778888888888888888888999999999999998888999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhc-CceEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK-NLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i~~~~  164 (221)
                      +++|+|+++..++..+..|+..+.... .+.|+++|+||+|+... ....+ ...++... +.+++++||++|.|++++|
T Consensus       102 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~  181 (192)
T 2il1_A          102 IILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIF  181 (192)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999988887764 47999999999999653 33333 34555553 7899999999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      .+|.+.+.+
T Consensus       182 ~~l~~~i~~  190 (192)
T 2il1_A          182 LKLVDDILK  190 (192)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=4.1e-29  Score=185.89  Aligned_cols=164  Identities=28%  Similarity=0.529  Sum_probs=141.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++..++++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34579999999999999999999998888777788888888888888888889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ++|+|+++..++..+..|+..+..... +.|+++|+||+|+..+....+ ...++...+++++++||+++.|++++|.+|
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            999999999999999999988877653 789999999999965444433 346667778899999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       177 ~~~~~~  182 (213)
T 3cph_A          177 AKLIQE  182 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1e-29  Score=187.76  Aligned_cols=166  Identities=23%  Similarity=0.323  Sum_probs=136.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..++..+++
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345689999999999999999999999988887778887666 5555666777899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-cccc-HHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      +++|||+++..+|..+..|...+....  .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|++++|
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887653  4789999999999864 3333 34457778889999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 027593          165 LYLARKLAGDP  175 (221)
Q Consensus       165 ~~l~~~l~~~~  175 (221)
                      .+|.+.+....
T Consensus       179 ~~l~~~i~~~~  189 (201)
T 3oes_A          179 TKVIQEIARVE  189 (201)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhh
Confidence            99999887654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=4.4e-29  Score=184.33  Aligned_cols=162  Identities=30%  Similarity=0.490  Sum_probs=138.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeE-----------------------------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------------------   61 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   61 (221)
                      .+.+||+|+|++|+|||||+++|+.+.+...+.++.+.++....+.+.+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457999999999999999999999988887778888877777777666544                             


Q ss_pred             --------EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 --------~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                              ..+.+|||||+..+...+..++..+|++++|+|++++.++..+..|+..+..... .|+++|+||+|.....
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~-~piilv~NK~D~~~~~  163 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN-YIIILVANKIDKNKFQ  163 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC-CEEEEEEECTTCC-CC
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC-CcEEEEEECCCccccc
Confidence                    8999999999999999999999999999999999999999999999888876544 9999999999954444


Q ss_pred             ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          134 VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       134 ~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ... +...++...+++++++||++|.|++++|.+|.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            443 4456777788999999999999999999999987753

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=8.4e-31  Score=192.07  Aligned_cols=165  Identities=26%  Similarity=0.512  Sum_probs=145.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..++..+++
T Consensus        19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   98 (191)
T 3dz8_A           19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMG   98 (191)
T ss_dssp             EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred             ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCE
Confidence            34567999999999999999999999888877777888888888888888888999999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +++|+|+++..+|..+..|+..+.... .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  178 (191)
T 3dz8_A           99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE  178 (191)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999999887765 58999999999998653 3333 34567778899999999999999999999


Q ss_pred             HHHHHHhC
Q 027593          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      +|.+.+..
T Consensus       179 ~l~~~i~~  186 (191)
T 3dz8_A          179 RLVDAICD  186 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=3e-29  Score=185.66  Aligned_cols=167  Identities=29%  Similarity=0.512  Sum_probs=140.8

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .....++.++|+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||+..+...+..++..
T Consensus         7 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   85 (206)
T 2bov_A            7 KGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRS   85 (206)
T ss_dssp             ----CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHH
T ss_pred             cCCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhh
Confidence            444567889999999999999999999998888777777777554 3456677888899999999999998888899999


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      ++++++|||+++..++..+..|+..+.....  +.|+++|+||+|+... .... +...++...+++++++||++|.|++
T Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~  165 (206)
T 2bov_A           86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVD  165 (206)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHH
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Confidence            9999999999999999999999988877654  8999999999999753 3333 3456777788999999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027593          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|.+.+..
T Consensus       166 ~l~~~l~~~i~~  177 (206)
T 2bov_A          166 KVFFDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998865

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=6.8e-29  Score=181.60  Aligned_cols=166  Identities=27%  Similarity=0.495  Sum_probs=128.7

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ....++.++|+++|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||+..+...+..++..+
T Consensus        15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   93 (190)
T 3con_A           15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTG   93 (190)
T ss_dssp             ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTC
T ss_pred             cccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcC
Confidence            34468899999999999999999999998877766666665443 34566777889999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +++++|+|+++..++..+..|...+....  .+.|+++|+||+|+..+.... +..+++...+++++++|++++.|++++
T Consensus        94 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  173 (190)
T 3con_A           94 EGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDA  173 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence            99999999999999999999988887764  379999999999997644443 345677778899999999999999999


Q ss_pred             HHHHHHHHhC
Q 027593          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |.+|.+.+.+
T Consensus       174 ~~~l~~~~~~  183 (190)
T 3con_A          174 FYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=1.6e-29  Score=187.37  Aligned_cols=163  Identities=24%  Similarity=0.408  Sum_probs=136.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+...+..++..++++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            34579999999999999999999999888777777887665 34566677889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccHH-HHHHHHhcC-ceEEEee
Q 027593           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~~-~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||+++..+|..+ ..|...+....++.|+++|+||+|+...             .+..+ ...++...+ ..++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            999999999999998 6898888777778999999999999642             23332 345666666 6999999


Q ss_pred             cC-CCCChHHHHHHHHHHHhC
Q 027593          154 AK-SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~-~~~~i~~~~~~l~~~l~~  173 (221)
                      |+ ++.|++++|..|.+.+..
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHhh
Confidence            99 688999999999988753

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.4e-30  Score=191.50  Aligned_cols=165  Identities=19%  Similarity=0.171  Sum_probs=134.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------cCCceeEeeeEEE-EecCeEEEEEEEeCCCccccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~~~~~D~~g~~~~~   76 (221)
                      ...+.+||+|+|++|||||||++. +.+.+...+           .++.+.++..... .+++..+.+.+|||||++.+.
T Consensus        10 ~~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~   88 (198)
T 3t1o_A           10 NREINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN   88 (198)
T ss_dssp             TTEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred             ccccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence            345689999999999999999975 666665553           2355555555544 566778999999999999999


Q ss_pred             ccccccccCccEEEEEEeCC------ChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eE
Q 027593           77 GLRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QY  149 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~  149 (221)
                      ..+..+++.++++++|+|++      +..+|..+..|+..+.....+.|+++|+||+|+.+.....+..+++...++ ++
T Consensus        89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~  168 (198)
T 3t1o_A           89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPV  168 (198)
T ss_dssp             HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCE
T ss_pred             HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceE
Confidence            99999999999999999999      567777777787776544568999999999999876444555677778888 99


Q ss_pred             EEeecCCCCChHHHHHHHHHHHhCC
Q 027593          150 YEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       150 ~~~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      +++||++|.|++++|.+|.+.+...
T Consensus       169 ~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          169 LEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             EECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999988653

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=4e-29  Score=183.09  Aligned_cols=164  Identities=29%  Similarity=0.528  Sum_probs=140.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee-eEEEEecCe---------EEEEEEEeCCCcccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~D~~g~~~~~~~~   79 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++. .....+.+.         .+.+.+|||||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            455799999999999999999999988887777888887777 555666655         7899999999999998888


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecC
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAK  155 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~  155 (221)
                      ..++..+|++++|+|+++..++..+..|+..+....  .+.|+++|+||+|+... .... +...++...+++++++|++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            999999999999999999999999999998887765  58999999999999653 3333 3446677778999999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027593          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~~  173 (221)
                      ++.|++++|.+|.+.+.+
T Consensus       168 ~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=2.7e-29  Score=179.73  Aligned_cols=160  Identities=19%  Similarity=0.268  Sum_probs=114.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|||||||+++|+. .......++.+.++ .....+++..+.+.+||++|+..+...+..++..++++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGG-VEDGPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCC-C----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcC-ccccCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            358999999999999999999664 44445556677666 3566778889999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      |||++++.+|..+..|...+....  .+.|+++|+||+|+.. +....+ ...++...+++++++||++|.|++++|.+|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            999999999999999988887653  5799999999999975 333333 446777788999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       159 ~~~~~~  164 (166)
T 3q72_A          159 VRQIRL  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=2.8e-29  Score=181.02  Aligned_cols=162  Identities=21%  Similarity=0.315  Sum_probs=126.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--ccccccccccCccE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC   88 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~~~~~~~~~~   88 (221)
                      ++.+||+|+|++|||||||+++|+.+.+.. ..++.+.+.....+.+++..+.+.+|||||+..  +......+++.+++
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERD-LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCcc-ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            567999999999999999999987766543 345677777777788888889999999999887  45566777889999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      +++|||++++.+|..+..|...+...  ..+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999999998887764  24799999999999975 33333 3345667778999999999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      .+|.+.+..
T Consensus       161 ~~l~~~~~~  169 (175)
T 2nzj_A          161 EGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=4.1e-29  Score=181.03  Aligned_cols=164  Identities=30%  Similarity=0.515  Sum_probs=140.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...+.++.+..+. ....+++....+.+|||||+..+...+..++..++++
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~   84 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   84 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence            456799999999999999999999998887777778776655 5667777789999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++|+|+++..++..+..|...+....  .+.|+++|+||+|+... .... +...++...+++++++||++|.|++++|.
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  164 (181)
T 2fn4_A           85 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  164 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence            99999999999999999988875442  47899999999999753 3333 34466777789999999999999999999


Q ss_pred             HHHHHHhCC
Q 027593          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+...
T Consensus       165 ~l~~~~~~~  173 (181)
T 2fn4_A          165 QLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999988653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=1.5e-29  Score=180.80  Aligned_cols=161  Identities=29%  Similarity=0.524  Sum_probs=137.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |+.+||+++|++|+|||||+++++.+.+...+.++.+... .....+++....+.+|||||++.+...+..++..+++++
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i   79 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence            4679999999999999999999998888777777766443 556777888899999999999998888888999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|+|+++..++..+..|...+....  .+.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|.+
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  159 (167)
T 1kao_A           80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence            9999999999999998888877654  4799999999999864 33333 344667777899999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       160 l~~~~~  165 (167)
T 1kao_A          160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=3.3e-29  Score=182.47  Aligned_cols=166  Identities=29%  Similarity=0.515  Sum_probs=138.4

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      +..+++.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||+..+...+..++..+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   90 (187)
T 2a9k_A           12 SQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   90 (187)
T ss_dssp             -----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccC
Confidence            33467889999999999999999999998888777777776554 34566777788999999999999888889999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +++++|+|+++..++..+..|+..+.....  +.|+++|+||+|+... .... +...++...+++++++|++++.|+++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  170 (187)
T 2a9k_A           91 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  170 (187)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence            999999999999999999999888877654  7999999999999653 3333 44567778889999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|.+.+..
T Consensus       171 l~~~l~~~i~~  181 (187)
T 2a9k_A          171 VFFDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=6.2e-29  Score=183.57  Aligned_cols=160  Identities=29%  Similarity=0.481  Sum_probs=135.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      ..+||+|+|.+|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..+|++++
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~  102 (201)
T 2gco_A           24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM  102 (201)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence            36899999999999999999999888877777777665543 46677788999999999999999999999999999999


Q ss_pred             EEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEeecC
Q 027593           92 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEISAK  155 (221)
Q Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s~~  155 (221)
                      |||+++..++..+ ..|...+....++.|+++|+||+|+....             +.. +...++...+. +++++||+
T Consensus       103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~  182 (201)
T 2gco_A          103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK  182 (201)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence            9999999999988 57888887777789999999999996531             222 33456666677 89999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 027593          156 SNYNFEKPFLYLARKLA  172 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~  172 (221)
                      +|.|++++|.+|.+.+.
T Consensus       183 ~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          183 TKEGVREVFEMATRAGL  199 (201)
T ss_dssp             TCTTHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999998765

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=3.4e-29  Score=181.65  Aligned_cols=164  Identities=27%  Similarity=0.549  Sum_probs=125.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ..+.++|+|+|++|||||||+++++.+.+...+.++.+.+.....+.++ +....+.+|||||++.+...+..++..+++
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            4567999999999999999999999888877777888877777777766 556899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcc--cccH-HHHHHHH-hcCceEEEeecCCCCC
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QVKA-KQVTFHR-KKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~--~~~~-~~~~~~~-~~~~~~~~~s~~~~~~  159 (221)
                      +++|+|+++..++..+..|+..+....     .+.|+++|+||+|+...  .... +...++. ..+.+++++|+++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            999999999999999999988877654     57899999999999542  2223 3334555 4578999999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      ++++|.+|.+.+.+
T Consensus       165 i~~l~~~l~~~~~~  178 (182)
T 1ky3_A          165 VDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998754

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=6.3e-29  Score=184.36  Aligned_cols=164  Identities=28%  Similarity=0.457  Sum_probs=132.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+..+||+|+|.+|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..++++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~  100 (207)
T 2fv8_A           22 SMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVI  100 (207)
T ss_dssp             GSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred             cccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence            4567999999999999999999999888877666777655543 356777889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEee
Q 027593           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~s  153 (221)
                      ++|+|+++..++..+ ..|...+....++.|+++|+||+|+....             +.. +...++...+. .++++|
T Consensus       101 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  180 (207)
T 2fv8_A          101 LMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECS  180 (207)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEee
Confidence            999999999999988 67888887777789999999999986531             222 23355666666 899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      |++|.|++++|.+|.+.+...
T Consensus       181 A~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          181 AKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             TTTCTTHHHHHHHHHHHHHSC
T ss_pred             CCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999988753

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=4.1e-29  Score=180.84  Aligned_cols=157  Identities=20%  Similarity=0.366  Sum_probs=128.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.+||+++|++|||||||+++|+.+.+.. +.++.+..+ ...+.+++..+.+.+|||+|++.     ..++++++++
T Consensus         4 ~~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~   76 (178)
T 2iwr_A            4 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAV   76 (178)
T ss_dssp             CCCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence            4678999999999999999999999888866 667777444 55667788889999999999876     4678889999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCC---cccccHH-HHHHHHhc-CceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVKAK-QVTFHRKK-NLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~---~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i  160 (221)
                      ++|||++++.+|..+..|...+....    ++.|+++|+||+|+.   .+....+ ...++... +++++++||++|.|+
T Consensus        77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i  156 (178)
T 2iwr_A           77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV  156 (178)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence            99999999999999999877665542    478999999999983   2333333 34555554 689999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 027593          161 EKPFLYLARKLAG  173 (221)
Q Consensus       161 ~~~~~~l~~~l~~  173 (221)
                      +++|.+|++.+..
T Consensus       157 ~~lf~~l~~~~~~  169 (178)
T 2iwr_A          157 DRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=6.6e-29  Score=181.25  Aligned_cols=163  Identities=28%  Similarity=0.520  Sum_probs=137.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+++++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3579999999999999999999998887776666664 444456677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..++..+..|...+....  .+.|+++|+||+|+.......+ ...++...+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988887754  4799999999999986554444 446777888999999999999999999999


Q ss_pred             HHHHhCC
Q 027593          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       161 ~~~~~~~  167 (189)
T 4dsu_A          161 VREIRKH  167 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9988643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=6.2e-30  Score=185.69  Aligned_cols=162  Identities=28%  Similarity=0.451  Sum_probs=121.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.+||+++|++|+|||||+++++.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..+++.++++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSA-NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBC-CCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEE-EEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            4567999999999999999999999888776666666544332 234455677889999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc-----------c-HHHHHHHHhcCc-eEEEeecC
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-----------K-AKQVTFHRKKNL-QYYEISAK  155 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-----------~-~~~~~~~~~~~~-~~~~~s~~  155 (221)
                      ++|+|++++.++..+. .|...+....++.|+++|+||+|+.....           . .+...++...+. +++++||+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            9999999999999987 78888887777899999999999864321           2 234466667776 99999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 027593          156 SNYNFEKPFLYLARKLA  172 (221)
Q Consensus       156 ~~~~i~~~~~~l~~~l~  172 (221)
                      +|.|++++|.+|.+.+.
T Consensus       164 ~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             TCTTHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHh
Confidence            99999999999999765

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.4e-29  Score=183.13  Aligned_cols=163  Identities=28%  Similarity=0.417  Sum_probs=137.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||+.. ...+..++..++++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            46789999999999999999999999888777777777554 45567788889999999999887 66777889999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCC-ChHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~-~i~~~~  164 (221)
                      ++|||++++.++..+..|...+....  .+.|+++|+||+|+.. +.... +...++...+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988887753  5899999999999975 33333 3446777778999999999999 999999


Q ss_pred             HHHHHHHhCC
Q 027593          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      .+|.+.+.+.
T Consensus       183 ~~l~~~i~~~  192 (196)
T 2atv_A          183 YELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987643

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.96  E-value=6.5e-29  Score=183.93  Aligned_cols=162  Identities=26%  Similarity=0.471  Sum_probs=132.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ..++.+||+++|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..++..+++
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            456789999999999999999999998888777777775 3444566677788899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcCc-eEEEe
Q 027593           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKNL-QYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~~-~~~~~  152 (221)
                      +++|||+++..++..+. .|...+....++.|+++|+||+|+....             ... +...++...+. +++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            99999999999999987 7888888877889999999999986532             222 33456666665 69999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027593          153 SAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l  171 (221)
                      ||++|.|++++|.+|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=9e-29  Score=182.11  Aligned_cols=163  Identities=26%  Similarity=0.418  Sum_probs=137.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+|+|++|||||||+++|+.+.+...+.++.+.++. ....+++..+.+.+|||||+..+...+..++..+++++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            45799999999999999999999988887777777765544 34566778889999999999998888888999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||+++..++..+..|...+....   ++.|+++|+||+|+..+.... +...++...+++++++||++|.|++++|.+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999888877766543   478999999999997654444 344667777899999999999999999999


Q ss_pred             HHHHHhCC
Q 027593          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |.+.+...
T Consensus       165 l~~~~~~~  172 (199)
T 2gf0_A          165 LLTLETRR  172 (199)
T ss_dssp             HHHHCSSS
T ss_pred             HHHHHhhh
Confidence            99977554

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.96  E-value=1.3e-28  Score=181.19  Aligned_cols=163  Identities=18%  Similarity=0.335  Sum_probs=129.1

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ....+.+||+|+|.+|||||||+++|+.+.+.. .+.++.+.+....    .+..+.+.+|||||++.+...+..++..+
T Consensus        12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~   87 (199)
T 4bas_A           12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDNI   87 (199)
T ss_dssp             ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTTC
T ss_pred             cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhcC
Confidence            346678999999999999999999998888877 6678887554433    34678999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhc---------CCCCEEEEEeCCCCCcccccHHH---HH---HHHhcCceEEE
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQ---VT---FHRKKNLQYYE  151 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~i~v~nk~D~~~~~~~~~~---~~---~~~~~~~~~~~  151 (221)
                      |++++|+|+++..+|..+..|+..+....         .+.|+++|+||+|+.......+.   ..   .+...++++++
T Consensus        88 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (199)
T 4bas_A           88 DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFA  167 (199)
T ss_dssp             SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEE
T ss_pred             CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEE
Confidence            99999999999999999988888775542         27899999999999764322221   11   11446789999


Q ss_pred             eecCCCCChHHHHHHHHHHHhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      +||++|.|++++|.+|.+.+...
T Consensus       168 ~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          168 SNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             CBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             eeCCCccCHHHHHHHHHHHHHHH
Confidence            99999999999999999988653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.96  E-value=1.6e-29  Score=187.25  Aligned_cols=163  Identities=24%  Similarity=0.398  Sum_probs=104.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEecCe--EEEEEEEeCCCcccccccccccccCc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .+.++|+|+|++|||||||+++|+.+  .+...+.++.+.+.....+.+.+.  .+.+.+|||||++.+...+..++..+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            46799999999999999999998877  666667777777777777777776  89999999999999998999999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhcC----CCCEEEEEeCCCCCc--cccc-HHHHHHHHhcCceEEEeecCC-CC
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQVK-AKQVTFHRKKNLQYYEISAKS-NY  158 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~i~v~nk~D~~~--~~~~-~~~~~~~~~~~~~~~~~s~~~-~~  158 (221)
                      |++++|+|++++.+|..+..|+..+.....    +.|+++|+||+|+..  +... .+...++...+++++++|+++ +.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999998887654    789999999999975  3333 344567778889999999999 99


Q ss_pred             ChHHHHHHHHHHHhC
Q 027593          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~  173 (221)
                      |++++|.+|.+.+..
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999997753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.96  E-value=3.6e-29  Score=186.88  Aligned_cols=163  Identities=33%  Similarity=0.537  Sum_probs=138.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe----------EEEEEEEeCCCccccccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~D~~g~~~~~~~~~   80 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+.          .+.+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            44699999999999999999999988887766777777777666666655          78999999999999988889


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~  156 (221)
                      .++..+|++++|+|+++..++..+..|+..+....  .+.|+++|+||+|+... .... +...++...+++++++||++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            99999999999999999999999888888776543  57899999999999653 3333 34567777889999999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027593          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~~i~~~~~~l~~~l~~  173 (221)
                      +.|++++|.+|.+.+..
T Consensus       183 g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          183 GQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.9e-28  Score=175.98  Aligned_cols=160  Identities=25%  Similarity=0.426  Sum_probs=132.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.++. .....++....+.+|||||+..+...+..++..++++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            3689999999999999999999988877666677665543 345667778899999999999888888888999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |+|++++.++..+..|...+....   ++.|+++|+||+|+... .... +...++...+++++++|+++|.|++++|.+
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999888887776653   47999999999998653 3333 344566777889999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            998653

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.96  E-value=3.2e-28  Score=177.41  Aligned_cols=159  Identities=17%  Similarity=0.252  Sum_probs=128.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+++|++|||||||+++++.+. ...+.++.+.+....  .+  .+..+.+|||||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTL--EH--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEE--EE--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            678999999999999999999988777 666677777554433  33  3589999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+..+.     ....+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence            999999999999988888777554  357999999999999764322222111     1234678999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027593          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |.+|.+.+.++
T Consensus       171 ~~~l~~~i~~~  181 (186)
T 1ksh_A          171 IDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.96  E-value=1.3e-28  Score=179.93  Aligned_cols=160  Identities=23%  Similarity=0.394  Sum_probs=129.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .++.+||+|+|++|||||||+++|+.+.+...+.++.+.++...    ......+.+|||||++.+...+..++..+|++
T Consensus        19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   94 (188)
T 1zd9_A           19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI   94 (188)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence            45579999999999999999999998888777778888766542    33568999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-----HHHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.......+...     .....+++++++||++|.|+++
T Consensus        95 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~  174 (188)
T 1zd9_A           95 VYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDI  174 (188)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHH
Confidence            9999999999999988888777553  35899999999999975422221111     1123456899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|.+.+..
T Consensus       175 l~~~l~~~~~~  185 (188)
T 1zd9_A          175 TLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHTCC-
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=4e-28  Score=180.21  Aligned_cols=163  Identities=20%  Similarity=0.298  Sum_probs=129.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC--CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG   86 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~   86 (221)
                      ..+.+||+|+|.+|||||||+++|+....  ... .++.|.+.....+.+++..+.+.+|||+|+.. +......+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~-~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD-CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCc-CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            35679999999999999999999875332  222 23456666666777888889999999999876 445566778899


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +++++|||+++..+|..+..|...+...  ..+.|+++|+||+|+.. +.+..+ ...++...+++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999898877653  35799999999999965 334433 3456667789999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998753

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.96  E-value=1.3e-28  Score=179.74  Aligned_cols=161  Identities=22%  Similarity=0.308  Sum_probs=124.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+++|++|||||||+++++.+.+. .+.++.+.+...  +.+  .+..+.+|||||++.+...+..++..+|++
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   87 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEE--IVI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV   87 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEE--EEE--TTEEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            467899999999999999999998877776 556666644333  333  348999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|+++..+|..+..|+..+...  ..+.|+++|+||+|+.......+....     ....+++++++||++|.|+++
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A           88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence            9999999999999999888887664  368999999999999753222222221     123467899999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027593          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|.+|++.+...+
T Consensus       168 l~~~l~~~~~~~~  180 (187)
T 1zj6_A          168 GLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.9e-28  Score=178.37  Aligned_cols=162  Identities=21%  Similarity=0.333  Sum_probs=124.3

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCC-CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .....+.+||+|+|.+|||||||+++|+.+. +...+.++.+...  ..+.+  .+..+.+|||||++.+...+..++..
T Consensus        15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~   90 (190)
T 2h57_A           15 VPRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSI--EKFKS--SSLSFTVFDMSGQGRYRNLWEHYYKE   90 (190)
T ss_dssp             ------CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEE--EEEEC--SSCEEEEEEECCSTTTGGGGGGGGGG
T ss_pred             ccCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeE--EEEEE--CCEEEEEEECCCCHHHHHHHHHHHhc
Confidence            3445678999999999999999999987766 4555566666333  23333  34799999999999999999999999


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCcccccHHHHHHHH-----hcCceEEEeecCC
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKS  156 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~  156 (221)
                      +|++++|+|+++..++..+..|+..+....    .+.|+++|+||+|+.......+..+...     ..+++++++||++
T Consensus        91 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  170 (190)
T 2h57_A           91 GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIK  170 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCC
Confidence            999999999999999999888888776543    4789999999999975432222222221     2467899999999


Q ss_pred             CCChHHHHHHHHHHHh
Q 027593          157 NYNFEKPFLYLARKLA  172 (221)
Q Consensus       157 ~~~i~~~~~~l~~~l~  172 (221)
                      |.|++++|.+|.+.+.
T Consensus       171 ~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          171 GEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             TBTHHHHHHHHHHHC-
T ss_pred             CcCHHHHHHHHHHHHH
Confidence            9999999999998764

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.96  E-value=1.3e-28  Score=178.93  Aligned_cols=159  Identities=22%  Similarity=0.309  Sum_probs=123.1

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+.+||+|+|.+|||||||+++|+.+.+ ..+.++.+.+...  +.+  .+..+.+|||||++.+...+..++..+
T Consensus        15 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~   89 (181)
T 2h17_A           15 VPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEE--IVI--NNTRFLMWDIGGQESLRSSWNTYYTNT   89 (181)
T ss_dssp             ------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEE--EEE--TTEEEEEEEESSSGGGTCGGGGGGTTC
T ss_pred             cCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhccC
Confidence            33456789999999999999999999888776 5566677655433  333  348999999999999999999999999


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCC
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~  159 (221)
                      |++++|+|+++..+|..+..|+..+...  ..+.|+++|+||+|+.......+....     ....+++++++||++|.|
T Consensus        90 d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~g  169 (181)
T 2h17_A           90 EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEG  169 (181)
T ss_dssp             CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcC
Confidence            9999999999999999988888777654  368999999999999763222222111     123456899999999999


Q ss_pred             hHHHHHHHHHH
Q 027593          160 FEKPFLYLARK  170 (221)
Q Consensus       160 i~~~~~~l~~~  170 (221)
                      ++++|.+|.+.
T Consensus       170 i~~l~~~l~~~  180 (181)
T 2h17_A          170 LCQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhh
Confidence            99999998763

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.96  E-value=2.9e-30  Score=190.39  Aligned_cols=163  Identities=31%  Similarity=0.569  Sum_probs=133.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i  110 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII  110 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence            45799999999999999999998887777777778888888888888888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-cc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|+++..+|..+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|.+|
T Consensus       111 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l  190 (199)
T 3l0i_B          111 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTM  190 (199)
T ss_dssp             ECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999998887654 478999999999986532 22 23456777888999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       191 ~~~l~~  196 (199)
T 3l0i_B          191 AAEIKK  196 (199)
T ss_dssp             TTTTTT
T ss_pred             HHHHHH
Confidence            887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.96  E-value=2.3e-28  Score=180.19  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=117.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+++|++|||||||++++..+.+ ..+.++.+.+.  ..+.+++  ..+.+|||||++.++..+..+++.++++
T Consensus        22 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~   96 (198)
T 1f6b_A           22 YKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGI   96 (198)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence            45678999999999999999999877665 34556666543  2344443  8999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHH-----------------hcCceEE
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQYY  150 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-----------------~~~~~~~  150 (221)
                      ++|+|++++.+|..+..|+..+...  ..+.|+++|+||+|+.......+..+...                 ..+++++
T Consensus        97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (198)
T 1f6b_A           97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  176 (198)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEE
Confidence            9999999999999999888887654  35899999999999976322222223222                 1356899


Q ss_pred             EeecCCCCChHHHHHHHHHH
Q 027593          151 EISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ++||++|.|++++|.+|.+.
T Consensus       177 ~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          177 MCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             ECBTTTTBSHHHHHHHHHTT
T ss_pred             EEECCCCCCHHHHHHHHHHh
Confidence            99999999999999998764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.96  E-value=1.7e-27  Score=171.10  Aligned_cols=159  Identities=21%  Similarity=0.315  Sum_probs=126.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+++|++|+|||||+++++.+.+. .+.++.+.....  ..+  ....+.+|||||++.+...+..++..+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVET--VTY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEE--EEE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEE--EEE--CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45699999999999999999998877764 345566644433  333  3688999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|+++..+|..+..|+..+....  .+.|+++|+||+|+.......+..     ......+++++++||++|.|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            9999999999998888877765542  589999999999997642222111     223345678999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027593          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |.+|.+.+.++
T Consensus       160 ~~~l~~~i~~~  170 (171)
T 1upt_A          160 MEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhc
Confidence            99999988654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.96  E-value=7.9e-28  Score=176.15  Aligned_cols=155  Identities=18%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+++|++|||||||++++..+.+. .+.++.+.+.  ..+.++  +..+.+|||||++.+...+..+++.++++
T Consensus        20 ~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   94 (190)
T 1m2o_B           20 WNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS--EELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNGI   94 (190)
T ss_dssp             ----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE--EEEEET--TEEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe--EEEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence            356789999999999999999998877764 4556666543  333444  38999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHH-HHHHH------------hcCceEEEeec
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-VTFHR------------KKNLQYYEISA  154 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~------------~~~~~~~~~s~  154 (221)
                      ++|+|++++.+|..+..|...+...  ..+.|+++|+||+|+... ...+. .+...            ..+++++++||
T Consensus        95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA-VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC-CCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC-CCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            9999999999999999888877653  358999999999999763 22322 22222            24568999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 027593          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~  170 (221)
                      ++|.|++++|.+|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998763

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=2.5e-27  Score=173.81  Aligned_cols=163  Identities=20%  Similarity=0.321  Sum_probs=126.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCC--CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-ccccccccccCc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG   86 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-~~~~~~~~~~~~   86 (221)
                      ..+.+||+++|.+|||||||+++|+...  +...+ ++.+.+.....+.+++..+.+.+|||+|... +......+++.+
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~   81 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG   81 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence            4567999999999999999999987532  22222 3455566666777888889999999999776 455667778889


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      +++++|||+++..+|..+..|...+....  .+.|+++|+||+|+.. +....+ ...++...+++++++||++|.|+++
T Consensus        82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            99999999999999999998888776642  4789999999999864 333333 3355667788999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+..
T Consensus       162 lf~~l~~~~~~  172 (192)
T 2cjw_A          162 LFEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=5.5e-28  Score=175.63  Aligned_cols=159  Identities=17%  Similarity=0.298  Sum_probs=123.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +.+.++|+++|++|||||||++++..+. ...+.++.|.+...  +.++  +..+.+|||||++.+...+..++..++++
T Consensus        13 ~~~~~ki~ivG~~~vGKSsL~~~l~~~~-~~~~~~t~g~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~   87 (181)
T 1fzq_A           13 PDQEVRILLLGLDNAGKTTLLKQLASED-ISHITPTQGFNIKS--VQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDIL   87 (181)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSC-CEEEEEETTEEEEE--EEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhcCC-CCcccCcCCeEEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            3678999999999999999999976554 34456666644332  3333  57899999999999988888899999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|+|++++.+|..+..|+..+...  ..+.|+++|+||+|+.......+....     ....+++++++||++|.|+++
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (181)
T 1fzq_A           88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQD  167 (181)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHH
Confidence            9999999999999988888776543  357999999999999764322221111     123456899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|.+.+.+
T Consensus       168 l~~~l~~~~~~  178 (181)
T 1fzq_A          168 GMNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHHh
Confidence            99999987643

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=8.5e-28  Score=176.26  Aligned_cols=160  Identities=21%  Similarity=0.307  Sum_probs=120.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|++|||||||+++++.+.+.. +.++.+....    .+...+..+.+|||||++.+...+..++..+|+
T Consensus        25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   99 (192)
T 2b6h_A           25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQG   99 (192)
T ss_dssp             TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEE----EEEETTEEEEEEECC-----CTTHHHHHHTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEE----EEEECCEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            45678999999999999999999987776643 3445553222    223356899999999999999988899999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.......+..     ......+++++++||++|.|++
T Consensus       100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~  179 (192)
T 2b6h_A          100 LIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLY  179 (192)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHH
Confidence            99999999999999988888877553  2579999999999997542212111     1122345689999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027593          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|.+.+.+
T Consensus       180 ~l~~~l~~~i~~  191 (192)
T 2b6h_A          180 DGLDWLSHELSK  191 (192)
T ss_dssp             HHHHHHHHHTTT
T ss_pred             HHHHHHHHHHhc
Confidence            999999997653

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=8.5e-28  Score=171.54  Aligned_cols=155  Identities=24%  Similarity=0.312  Sum_probs=121.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.. +.++.+...    ..+...+..+.+|||||++.+...+..++..+|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE----EEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE----EEEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999988777654 455555322    223345689999999999999888888999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |++++.+|..+..|+..+...  ..+.|+++|+||+|+.......+..     ......+++++++||++|.|++++|.+
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            999999999888888777553  3589999999999997642212111     112234568999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+.+
T Consensus       156 l~~~i~~  162 (164)
T 1r8s_A          156 LSNQLRN  162 (164)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            9987653

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.95  E-value=5e-28  Score=175.85  Aligned_cols=158  Identities=19%  Similarity=0.279  Sum_probs=122.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.++|+++|++|||||||+++++.+.+ ..+.++.+.....  ..+  .+..+.+|||||+..+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~--~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVET--LSY--KNLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEE--EEE--TTEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            6789999999999999999999776766 5556677644333  333  3489999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHH-----HhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            999999999999988888877664  3579999999999997642222222211     223468999999999999999


Q ss_pred             HHHHHHHHhC
Q 027593          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      +.+|.+.+.+
T Consensus       171 ~~~l~~~~~~  180 (183)
T 1moz_A          171 LDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999998753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.95  E-value=3e-28  Score=177.45  Aligned_cols=162  Identities=19%  Similarity=0.331  Sum_probs=121.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC--CCCCcccCCceeEeeeEEEEe---cCeEEEEEEEeCCCcccccccccccccCcc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      .+||+|+|++|||||||+++|+..  .+...+.++.|.++......+   ++..+.+.+|||+|++.+...+..++..++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999997764  344455667777766655443   235678999999999999888888999999


Q ss_pred             EEEEEEeCCCh-hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-----HHHHHHHhcCce----EEEeecCCC
Q 027593           88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-----KQVTFHRKKNLQ----YYEISAKSN  157 (221)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-----~~~~~~~~~~~~----~~~~s~~~~  157 (221)
                      ++++|||++++ .++..+..|+..+....++.|+++|+||+|+.......     ....++...+++    ++++||+++
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 58999999999887766789999999999997532211     122444455665    999999999


Q ss_pred             C-ChHHHHHHHHHHHhCC
Q 027593          158 Y-NFEKPFLYLARKLAGD  174 (221)
Q Consensus       158 ~-~i~~~~~~l~~~l~~~  174 (221)
                      . ++++++..|.+.+...
T Consensus       162 ~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          162 SDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             chhHHHHHHHHHHHHhcc
Confidence            6 9999999999887653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.95  E-value=8.5e-28  Score=176.77  Aligned_cols=164  Identities=14%  Similarity=0.147  Sum_probs=118.8

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccc---cc
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLR---DG   81 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~---~~   81 (221)
                      ....+.+.+||+++|.+|||||||+++ +.+.+..........+.......+. +..+.+.+|||+|++.+....   ..
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~   91 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKV-VFHKMSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM   91 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHH-HHSCCCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHH-HHhcCCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence            445567789999999999999999997 5555544322222223333333343 566899999999999987776   78


Q ss_pred             cccCccEEEEEEeCCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc--------ccHH-HHHHHH----hcC
Q 027593           82 YYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHR----KKN  146 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~--------~~~~-~~~~~~----~~~  146 (221)
                      +++.++++++|||+++.  .++..+..|+..+....++.|+++|+||+|+....        +..+ ...++.    ..+
T Consensus        92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  171 (196)
T 3llu_A           92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLH  171 (196)
T ss_dssp             HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSC
T ss_pred             ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCC
Confidence            99999999999999997  66666667777665556789999999999986421        1111 224444    567


Q ss_pred             ceEEEeecCCCCChHHHHHHHHHHH
Q 027593          147 LQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       147 ~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ++++++||++ .|++++|..|++.+
T Consensus       172 ~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          172 LSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             cceEEEEech-hhHHHHHHHHHHHh
Confidence            8999999999 99999999999865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.95  E-value=3.7e-27  Score=172.24  Aligned_cols=159  Identities=19%  Similarity=0.257  Sum_probs=125.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+++|++|||||||+++++.+.+. .+.++.+.....  ...  .+..+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~t~~~~~~~--~~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVV-TTVPTVGVNLET--LQY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCE-EECSSTTCCEEE--EEE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCC-CcCCCCceEEEE--EEE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            67899999999999999999997766654 345566643332  233  3689999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      +|+|++++.++..+..|+..+....  .+.|+++|+||+|+.......+..     ......+++++++||+++.|++++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            9999999999998888877765542  579999999999997642222211     122334668999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027593          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |.+|.+.+...
T Consensus       175 ~~~l~~~i~~~  185 (189)
T 2x77_A          175 MDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.95  E-value=3.3e-26  Score=168.69  Aligned_cols=162  Identities=33%  Similarity=0.577  Sum_probs=137.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.++|+|+|++|||||||++++++..+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..++..++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46899999999999999999998888777777888888777788888888999999999999988888888999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..++.++..|...+.... ...|+++++||+|+... ... .+...++...++.++.+|++++.+++++|..|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888887776543 47899999999999652 222 234567777889999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=2.3e-26  Score=181.99  Aligned_cols=162  Identities=25%  Similarity=0.446  Sum_probs=137.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      ...++|+++|.+|+|||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..++..+++++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            3469999999999999999999998888777777776444 445667788899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcCc-eEEEeec
Q 027593           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~~-~~~~~s~  154 (221)
                      +|||++++.+|..+. .|...+....++.|+++|+||+|+...             .... +...++...++ +++++||
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999887 788888777778999999999998542             2222 33456677776 9999999


Q ss_pred             CCCCChHHHHHHHHHHHhC
Q 027593          155 KSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~  173 (221)
                      ++|.|++++|..|.+.+..
T Consensus       312 ~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHhc
Confidence            9999999999999998765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=2.1e-29  Score=186.51  Aligned_cols=162  Identities=27%  Similarity=0.482  Sum_probs=131.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..++..+|+
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            446789999999999999999999888877666666665333 3344556677889999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-------------cc-HHHHHHHHhcCc-eEEEe
Q 027593           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VK-AKQVTFHRKKNL-QYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~-~~~~~~~~~~~~-~~~~~  152 (221)
                      +++|+|++++.++..+. .|...+....++.|+++|+||+|+....             .. .+...++...++ +++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            99999999999999886 7888777666689999999999996532             11 122345556666 89999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027593          153 SAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l  171 (221)
                      ||++|.|++++|..|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999988764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.95  E-value=9.7e-26  Score=165.16  Aligned_cols=160  Identities=33%  Similarity=0.574  Sum_probs=138.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.++|+|+|++|||||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|+..+...+..++..++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            46899999999999999999998888877788888888888888888888999999999999988888888999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|.++..|...+.... ...|+++++||+|+.+. ... .....++...++.++.+|++++.+++++|..|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888887766543 47899999999999652 222 334567777889999999999999999999998


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.94  E-value=3.5e-26  Score=163.67  Aligned_cols=154  Identities=17%  Similarity=0.191  Sum_probs=109.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI   84 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~   84 (221)
                      |+.++|+++|++|||||||+++|+...+.....++.+.+.....+.+.  +..+.+|||||+..+..      ....++.
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~   78 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYII   78 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHh
Confidence            456899999999999999999987765543322222222222233333  46899999999887653      2244554


Q ss_pred             --CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           85 --HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        85 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                        .++++++|+|+++...   ...|...+..  .+.|+++|+||+|+... ....+...++...+++++++||++|.|++
T Consensus        79 ~~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~  153 (165)
T 2wji_A           79 NEKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIE  153 (165)
T ss_dssp             HHCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred             cCCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHH
Confidence              7899999999988643   3346655544  37999999999998542 22223445666778999999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          162 KPFLYLARKL  171 (221)
Q Consensus       162 ~~~~~l~~~l  171 (221)
                      ++|.+|.+.+
T Consensus       154 ~l~~~l~~~~  163 (165)
T 2wji_A          154 ELKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            9999998865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.94  E-value=5.9e-26  Score=179.34  Aligned_cols=160  Identities=23%  Similarity=0.299  Sum_probs=119.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.+||+|+|.+|+|||||+++|+.+.+... .++.+..+    ..+...++.+.+|||||++.+...+..++..+|++
T Consensus       162 ~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~----~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~v  236 (329)
T 3o47_A          162 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV----ETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL  236 (329)
T ss_dssp             -CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE----EEEEETTEEEEEEECC-----CCSHHHHHTTEEEE
T ss_pred             ccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE----EEEecCcEEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence            45678999999999999999999877665433 23444333    23344568999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHH-----HHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++|||+++..+|..+..|+..+....  ++.|+++|+||+|+.+.....+....     ....+++++++||++|.|+++
T Consensus       237 ilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~e  316 (329)
T 3o47_A          237 IFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYE  316 (329)
T ss_dssp             EEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHH
Confidence            99999999999998887777665433  58999999999999764322222211     123456899999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027593          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|..|.+.+.+.
T Consensus       317 l~~~l~~~l~~~  328 (329)
T 3o47_A          317 GLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhc
Confidence            999999987653

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=1.2e-25  Score=167.46  Aligned_cols=158  Identities=19%  Similarity=0.222  Sum_probs=110.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccc-cccccccCcc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQ   87 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~-~~~~~~~~~~   87 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++. ....  .+.+++. .+.+.+|||||++.+.. .+..+++.++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            4567999999999999999999999888766554332 2222  2455543 68999999999998887 7788899999


Q ss_pred             EEEEEEeCCChh-hhccHHHH-HHHHHhh---cCCCCEEEEEeCCCCCcccccHHH---HH-------------------
Q 027593           88 CAIIMFDVTARL-TYKNVPTW-HRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ---VT-------------------  140 (221)
Q Consensus        88 ~~i~v~d~~~~~-s~~~~~~~-~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~~---~~-------------------  140 (221)
                      ++++|+|+++.. ++.....| ...+...   ..+.|+++|+||+|+.........   ..                   
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999854 45554443 3333321   247899999999999753321111   00                   


Q ss_pred             --------------HHH-hc--CceEEEeecCCC------CChHHHHHHHHHH
Q 027593          141 --------------FHR-KK--NLQYYEISAKSN------YNFEKPFLYLARK  170 (221)
Q Consensus       141 --------------~~~-~~--~~~~~~~s~~~~------~~i~~~~~~l~~~  170 (221)
                                    ++. ..  +++++++||++|      .|++++|.+|.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          000 11  678999999999      9999999999875

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.94  E-value=2e-26  Score=176.12  Aligned_cols=164  Identities=21%  Similarity=0.263  Sum_probs=119.4

Q ss_pred             ccCCceEEEEEcCC---------CCcHHHHHHHHhcC---CCCCcccCCc-eeEeeeEEE--------------EecCeE
Q 027593            9 VDYPSFKLVIVGDG---------GTGKTTFVKRHLTG---EFEKKYEPTI-GVEVHPLDF--------------FTNCGK   61 (221)
Q Consensus         9 ~~~~~~~i~v~G~~---------g~GKStli~~~~~~---~~~~~~~~~~-~~~~~~~~~--------------~~~~~~   61 (221)
                      ...+.+||+|+|.+         |||||||+++|+.+   .+...+.++. +.++....+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            45668999999999         99999999998883   4444433332 222221111              134567


Q ss_pred             EEEEEEe-----------------------CCCccccccccccccc---------------------CccEEEEEEeCCC
Q 027593           62 IRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVTA   97 (221)
Q Consensus        62 ~~~~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~i~v~d~~~   97 (221)
                      +.+.+||                       ++|++.+...+..++.                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       6777777777777777                     7999999999999


Q ss_pred             h--hhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHh-cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593           98 R--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus        98 ~--~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +  .+|..+..|+..+...  ..+.|+++|+||+|+.......+...++.. .+++++++||++|.|++++|.+|++.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            8  9999999999888665  368999999999999653222334455554 4789999999999999999999998764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.93  E-value=1.4e-25  Score=175.80  Aligned_cols=170  Identities=17%  Similarity=0.174  Sum_probs=131.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccccc----------c
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG----------G   77 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~----------~   77 (221)
                      .+.+.-.|+++|.+|||||||+|+|++..+ ....+..+++........... +..+.+|||||...+.          .
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~-~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~   84 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKV-SIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVE   84 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCc-cccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHH
Confidence            466778999999999999999999776554 344566777777766655555 7899999999986654          3


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC-cccccHHHH-HHHHhcC--ceEEEee
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQV-TFHRKKN--LQYYEIS  153 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~-~~~~~~~~~-~~~~~~~--~~~~~~s  153 (221)
                      ....++..+|++++|+|+++..++.+...|...+...  +.|+++|+||+|+. ......+.. .+....+  .+++++|
T Consensus        85 ~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vS  162 (308)
T 3iev_A           85 IAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPIS  162 (308)
T ss_dssp             HHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECB
T ss_pred             HHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEe
Confidence            4456688999999999999988888777777776653  78999999999997 444333333 4445544  7899999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCCCCcccc
Q 027593          154 AKSNYNFEKPFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~~~~~~~  181 (221)
                      |++|.|+++++..|.+.+...+..+..+
T Consensus       163 A~~g~gv~~L~~~l~~~l~~~~~~~~~~  190 (308)
T 3iev_A          163 ALKGANLDELVKTILKYLPEGEPLFPED  190 (308)
T ss_dssp             TTTTBSHHHHHHHHHHHSCBCCCSSCTT
T ss_pred             CCCCCCHHHHHHHHHHhCccCCCCCCcc
Confidence            9999999999999999988777655433

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.93  E-value=3.3e-25  Score=160.13  Aligned_cols=159  Identities=16%  Similarity=0.140  Sum_probs=116.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+.....++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|++
T Consensus         5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   82 (178)
T 2lkc_A            5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDIV   82 (178)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCEE
Confidence            45679999999999999999999988877665555555455555555554  4678999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHH-------hcC--ceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~~i  160 (221)
                      ++|+|+++........ ++..+.  ..+.|+++|+||+|+..... .+......       ..+  ++++++||++|.|+
T Consensus        83 i~v~d~~~~~~~~~~~-~l~~~~--~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv  158 (178)
T 2lkc_A           83 ILVVAADDGVMPQTVE-AINHAK--AANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGL  158 (178)
T ss_dssp             EEEEETTCCCCHHHHH-HHHHHG--GGSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHH
T ss_pred             EEEEECCCCCcHHHHH-HHHHHH--hCCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCCH
Confidence            9999998843222211 122222  23789999999999975321 11111111       122  58999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 027593          161 EKPFLYLARKLAGD  174 (221)
Q Consensus       161 ~~~~~~l~~~l~~~  174 (221)
                      +++|.+|.+.+...
T Consensus       159 ~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          159 DHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999987653

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.93  E-value=2.8e-25  Score=174.00  Aligned_cols=158  Identities=20%  Similarity=0.270  Sum_probs=121.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCC---CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-----cccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-----~~~~~~~~   83 (221)
                      ..+||+++|.+|||||||+++++.+...   ..+.+|.+..+..  ..+. +++.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            4689999999999999999997766322   1233444444433  2233 3689999999999988     77888889


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHH---hhcCCCCEEEEEeCCCCCcc--c-----cc-HHHHHHHHhcC---ceE
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNR--Q-----VK-AKQVTFHRKKN---LQY  149 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~p~i~v~nk~D~~~~--~-----~~-~~~~~~~~~~~---~~~  149 (221)
                      +.++++++|+|+++..+|.++..|...+.   ...++.|+++|+||+|+...  .     .. .+..+++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            99999999999999999999877755543   34568999999999999762  1     11 23346667776   799


Q ss_pred             EEeecCCCCChHHHHHHHHHHHhC
Q 027593          150 YEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       150 ~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      +++||++ .++.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999988887654

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=4.3e-25  Score=160.99  Aligned_cols=160  Identities=16%  Similarity=0.184  Sum_probs=116.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGY   82 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~   82 (221)
                      ..++.++|+++|++|||||||+++|+.+.+.....++.+.+.....+..  .+..+.+|||||+..+..      .+..+
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   80 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDY   80 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHH
Confidence            4578899999999999999999998766544333333333333333333  357899999999887642      33445


Q ss_pred             cc--CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCC
Q 027593           83 YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        83 ~~--~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (221)
                      +.  .++++++|+|+++.   .....|...+..  .+.|+++|+||+|+... ........++...+++++++|++++.|
T Consensus        81 ~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  155 (188)
T 2wjg_A           81 IINEKPDLVVNIVDATAL---ERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMG  155 (188)
T ss_dssp             HHHHCCSEEEEEEEGGGH---HHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBS
T ss_pred             HhccCCCEEEEEecchhH---HHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCC
Confidence            53  48999999998763   445566666554  37899999999998643 233344566677789999999999999


Q ss_pred             hHHHHHHHHHHHhCCC
Q 027593          160 FEKPFLYLARKLAGDP  175 (221)
Q Consensus       160 i~~~~~~l~~~l~~~~  175 (221)
                      ++++|.+|.+.+....
T Consensus       156 v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          156 IEELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhcc
Confidence            9999999999886654

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=9.8e-25  Score=164.11  Aligned_cols=161  Identities=12%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------ccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDG   81 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~   81 (221)
                      ...++|+|+|++|||||||+++|+.+.+..  .+..+++.......+......+.+|||||+....         .....
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~  104 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVDV--QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITA  104 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEEE--ECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHH
Confidence            457999999999999999999988766542  2233333333333333234789999999984211         11233


Q ss_pred             cccCccEEEEEEeCCChhhhccH--HHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH----HHHHHHhcC--ceEEEe
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK----QVTFHRKKN--LQYYEI  152 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~----~~~~~~~~~--~~~~~~  152 (221)
                      ++..++++++|+|+++..+|...  ..|+..+....++.|+++|+||+|+... ....+    ...++...+  ++++++
T Consensus       105 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (228)
T 2qu8_A          105 LAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSF  184 (228)
T ss_dssp             HHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred             hhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEE
Confidence            46778999999999999888622  2455555444458999999999999653 33222    234555555  899999


Q ss_pred             ecCCCCChHHHHHHHHHHHhC
Q 027593          153 SAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ||++|.|++++|.+|.+.+..
T Consensus       185 SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          185 STLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CTTTCTTHHHHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.92  E-value=7.9e-25  Score=160.49  Aligned_cols=157  Identities=13%  Similarity=0.185  Sum_probs=107.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------cccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~   79 (221)
                      ....++|+|+|++|||||||+++|+.+.+...+.++.+.+.......+++   .+.+|||||          ++.+...+
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            44579999999999999999999888776666777777777766555543   689999999          55556666


Q ss_pred             cccccCc---cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HH-H-HHHhcCceEEE
Q 027593           80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-T-FHRKKNLQYYE  151 (221)
Q Consensus        80 ~~~~~~~---~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~-~-~~~~~~~~~~~  151 (221)
                      ..++..+   +++++|+|+++..++.... +...+..  .+.|+++|+||+|+........   .. + +....+.++++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            6666666   9999999999887766543 2222222  4789999999999976432221   11 1 22234679999


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027593          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +||++|.|++++|.+|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998764

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.92  E-value=3.4e-25  Score=169.34  Aligned_cols=156  Identities=12%  Similarity=0.072  Sum_probs=119.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc------cccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY   83 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------~~~~   83 (221)
                      +++.++|+++|++|||||||+|+|++..+..  ...+|++.......+...+..+.+|||||...+...+      ..++
T Consensus         2 ~~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~--~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~   79 (258)
T 3a1s_A            2 PLHMVKVALAGCPNVGKTSLFNALTGTKQYV--ANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYL   79 (258)
T ss_dssp             -CEEEEEEEECCTTSSHHHHHHHHHTTCEEE--EECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHCCCCcc--cCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence            3567999999999999999999987766542  3344666666666665556899999999988766532      4454


Q ss_pred             --cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                        ..+|++++|+|+++..+..   .|...+...  +.|+++|+||+|+.. +....+...++..++++++++||++|.|+
T Consensus        80 ~~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (258)
T 3a1s_A           80 LKGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGL  154 (258)
T ss_dssp             HHSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTH
T ss_pred             hhcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCH
Confidence              5899999999999875533   344444433  799999999999854 23333455677788999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027593          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      +++|..|.+.+.
T Consensus       155 ~el~~~i~~~~~  166 (258)
T 3a1s_A          155 EELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999999765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.92  E-value=9.9e-26  Score=175.41  Aligned_cols=152  Identities=14%  Similarity=0.158  Sum_probs=112.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---cccccccCcc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQ   87 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---~~~~~~~~~~   87 (221)
                      ||+++|..|||||||++++..+ +.+.    ..+|.|.....    ++ ..+.+++|||+|+++|..   .+..|+++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~   74 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVG   74 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred             CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCC
Confidence            6899999999999999985544 4332    34566655442    22 348899999999999964   3578999999


Q ss_pred             EEEEEEeCCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCCCccc--------ccHHH-HHHHHh----cCceEEE
Q 027593           88 CAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAKQ-VTFHRK----KNLQYYE  151 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~i~v~nk~D~~~~~--------~~~~~-~~~~~~----~~~~~~~  151 (221)
                      ++++|||++++ .+.....|   +..+....++.|+++++||+|+....        +..+. .+++..    .++.|++
T Consensus        75 ~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e  153 (331)
T 3r7w_B           75 ALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL  153 (331)
T ss_dssp             EEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred             EEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence            99999999998 33333333   44444455789999999999997532        22222 234443    5789999


Q ss_pred             eecCCCCChHHHHHHHHHHHhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      +||++ .++.++|..+++.+..+
T Consensus       154 TSAkd-~nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          154 TSIFD-HSIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred             eccCC-CcHHHHHHHHHHHHHhh
Confidence            99998 58999999999887654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.92  E-value=2e-25  Score=160.86  Aligned_cols=152  Identities=15%  Similarity=0.151  Sum_probs=108.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee--eEEEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~   81 (221)
                      +.++|+|+|++|||||||+++|...... ...+..+++..  ...+.+++  ..+.+|||||+..+....        ..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence            5689999999999999999997765432 22233333333  33444443  468999999986543211        13


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      +++.++++++|+|+++..++. ...|...+.... .+.|+++|+||+|+.....     .++...+.+++++||++|.|+
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv  153 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGV  153 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTH
T ss_pred             HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCH
Confidence            578999999999999998876 346666665543 4789999999999854211     112234678999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027593          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      +++|.+|.+.+.
T Consensus       154 ~~l~~~l~~~~~  165 (172)
T 2gj8_A          154 DVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999998764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.92  E-value=1.2e-24  Score=169.74  Aligned_cols=164  Identities=19%  Similarity=0.119  Sum_probs=116.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc--------ccccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~   82 (221)
                      .+..+|+|+|.+|||||||+|+|++..+. ...+.++++.......+...+..+.+|||||....        ......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            56678999999999999999998766553 23344455555544444445689999999998763        3344566


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHH-HHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      ++.+|++++|+|+++..+..  ..|+ ..+....++.|+++|+||+|+..... ..+..+.. ....+++++||++|.|+
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv  160 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV  160 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence            88999999999999874433  3443 34444335799999999999975322 11111111 22357899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCc
Q 027593          161 EKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~  178 (221)
                      ++++..|.+.+...+.++
T Consensus       161 ~~l~~~l~~~l~~~~~~y  178 (301)
T 1wf3_A          161 AELKADLLALMPEGPFFY  178 (301)
T ss_dssp             HHHHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHHHhcccCCCCC
Confidence            999999999877666544

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1.2e-24  Score=154.51  Aligned_cols=151  Identities=21%  Similarity=0.175  Sum_probs=101.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc-------cccccccccCc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG   86 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~   86 (221)
                      +||+++|++|+|||||+++++.+.+. ......+++.......+...+..+.+|||||+..+       ...+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            58999999999999999998876642 22333444433333333323458899999998863       23344568899


Q ss_pred             cEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHHHHH
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~  165 (221)
                      +++++|+|+++..+... ..+...+..  .+.|+++|+||+|+.+..  .+..++. ..++ +++++||++|.|++++|.
T Consensus        81 ~~~i~v~d~~~~~~~~~-~~~~~~~~~--~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQAD-YEVAEYLRR--KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             SEEEEEEESSSCCCHHH-HHHHHHHHH--HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CEEEEEEECCCcccHhH-HHHHHHHHh--cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence            99999999998644322 112222222  378999999999997642  2222333 5566 899999999999999999


Q ss_pred             HHHHHH
Q 027593          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|.+.+
T Consensus       155 ~l~~~l  160 (161)
T 2dyk_A          155 AIWERL  160 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998864

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=9.3e-25  Score=183.10  Aligned_cols=165  Identities=21%  Similarity=0.298  Sum_probs=122.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEE--------EecCeEEEEEEEeCCCccccccccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~g~~~~~~~~~   80 (221)
                      ..++.+||+++|.+|||||||+++++.+.+...+.++.|.+......        ...+..+.+.+||+||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            46788999999999999999999999888877777788777665421        1123468999999999999999989


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      .+++.++++++|+|+++.   ..+..|...+....++.|+++|+||+|+... ....+ ........+++++++||++|.
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999998764   6677888888887778999999999999753 33333 345666778899999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027593          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~  176 (221)
                      |+++++..|.+.+...+.
T Consensus       194 gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CTTHHHHHHHHHTCTTS
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999998876554

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=3e-25  Score=171.19  Aligned_cols=157  Identities=13%  Similarity=0.125  Sum_probs=115.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc----------cc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL----------RD   80 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~----------~~   80 (221)
                      |+.++|+++|.+|||||||+|+|++..+.  ....+|++.......+...+..+.+|||||...+...          ..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g~~~~--v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~   78 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTGSRQR--VGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIAC   78 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHTTCEE--EEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCCcc--cCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHH
Confidence            46799999999999999999998766542  3344555555555555545567889999998876632          12


Q ss_pred             cc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCC
Q 027593           81 GY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      .+  ...+|++++|+|+++......+..++.   ..  +.|+++|+||+|+... ........+....+++++++||++|
T Consensus        79 ~~~~~~~~d~ii~VvD~~~~~~~~~~~~~l~---~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g  153 (274)
T 3i8s_A           79 HYILSGDADLLINVVDASNLERNLYLTLQLL---EL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRG  153 (274)
T ss_dssp             HHHHHTCCSEEEEEEEGGGHHHHHHHHHHHH---HH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGG
T ss_pred             HHHhhcCCCEEEEEecCCChHHHHHHHHHHH---hc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            22  268999999999998766544433333   32  8999999999998643 2223345566777899999999999


Q ss_pred             CChHHHHHHHHHHHhCC
Q 027593          158 YNFEKPFLYLARKLAGD  174 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~  174 (221)
                      .|+++++..|.+.+...
T Consensus       154 ~gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          154 RGIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHHHHHHHHTCCCCC
T ss_pred             CCHHHHHHHHHHHHhcC
Confidence            99999999998876544

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=2.9e-24  Score=165.55  Aligned_cols=159  Identities=17%  Similarity=0.135  Sum_probs=114.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------cccccc-
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY-   83 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~-   83 (221)
                      |+.++|+++|++|||||||+|+|++..+...  ..++++.......+...+..+.+|||||...+..      ....++ 
T Consensus         1 m~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~--~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~   78 (271)
T 3k53_A            1 MVLKTVALVGNPNVGKTTIFNALTGLRQHVG--NWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFIL   78 (271)
T ss_dssp             CCCEEEEEEECSSSSHHHHHHHHHTTCEEEE--ECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred             CceeEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence            5679999999999999999999877655333  3334444444444433445799999999887665      344444 


Q ss_pred             -cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        84 -~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                       ..+|++++|+|+++...   ...|...+... ...|+++|+||+|+.. .........+....+++++++|+++|.|++
T Consensus        79 ~~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~  154 (271)
T 3k53_A           79 DGNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVE  154 (271)
T ss_dssp             TTCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHH
T ss_pred             ccCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHH
Confidence             67999999999998642   22233333322 2399999999999854 223333456677788999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027593          162 KPFLYLARKLAGDP  175 (221)
Q Consensus       162 ~~~~~l~~~l~~~~  175 (221)
                      +++..+.+.+....
T Consensus       155 ~l~~~i~~~~~~~~  168 (271)
T 3k53_A          155 ELKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999876544

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.91  E-value=7.4e-25  Score=168.42  Aligned_cols=152  Identities=14%  Similarity=0.125  Sum_probs=117.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------ccccccc--
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--   84 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------~~~~~~~--   84 (221)
                      .++|+++|++|||||||+|+|++....  ....+|++.......+.. +..+.+|||||+..+..      ....++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~--v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQR--VGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCCC--CCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            589999999999999999998765532  334567788777777776 77899999999887652      3345554  


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      .+|++++|+|+++..++.   .|...+..  .+.|+++|+||+|+... ....+...+...++++++++||++|.|++++
T Consensus        80 ~~d~vi~V~D~t~~e~~~---~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           80 RADSILNVVDATNLERNL---YLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             CCSEEEEEEEGGGHHHHH---HHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEecCCchHhHH---HHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            699999999999875543   44444443  38999999999998542 3333445667778899999999999999999


Q ss_pred             HHHHHHHHh
Q 027593          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      |.+|.+.+.
T Consensus       155 ~~~i~~~~~  163 (272)
T 3b1v_A          155 VKKAAHTTT  163 (272)
T ss_dssp             HHHHHHSCT
T ss_pred             HHHHHHHHh
Confidence            999988653

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.91  E-value=8.4e-24  Score=154.81  Aligned_cols=157  Identities=17%  Similarity=0.225  Sum_probs=112.1

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------ccccc
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFG   76 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~   76 (221)
                      +......++|+|+|++|||||||+++|+.+. ...+.++.+.+.........   ..+.+|||||          +..+.
T Consensus        17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~   92 (195)
T 3pqc_A           17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVN---SKYYFVDLPGYGYAKVSKKERMLWK   92 (195)
T ss_dssp             CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEET---TTEEEEECCCBSSSCCCHHHHHHHH
T ss_pred             hCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEEC---CcEEEEECCCCccccCChhhHHHHH
Confidence            3445667999999999999999999987766 45556677766665544443   3577999999          55555


Q ss_pred             ccccccccCc---cEEEEEEeCCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----HHHHHHh-cC
Q 027593           77 GLRDGYYIHG---QCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRK-KN  146 (221)
Q Consensus        77 ~~~~~~~~~~---~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~~~~~~~-~~  146 (221)
                      ..+..++..+   +++++|+|+++..+...  +..|+...     +.|+++|+||+|+........    ....... ..
T Consensus        93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~  167 (195)
T 3pqc_A           93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGE  167 (195)
T ss_dssp             HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCC
T ss_pred             HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCC
Confidence            5556666555   99999999887643322  22333322     799999999999975332221    2233333 34


Q ss_pred             ceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          147 LQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       147 ~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ++++++||++|.|++++|.+|.+.+.
T Consensus       168 ~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          168 YTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             SCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CceEEEecCCCCCHHHHHHHHHHHhh
Confidence            79999999999999999999999764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.91  E-value=2.6e-23  Score=170.91  Aligned_cols=158  Identities=15%  Similarity=0.078  Sum_probs=98.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------cccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~   83 (221)
                      ..++|+|+|.+|+|||||+|+|+... ........+++.......+...+..+.+|||||+..+...+        ..++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~-~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQE-RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            35899999999999999999966543 23344556666666544444455789999999987765433        3468


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      ..+|++++|+|+++..++..+..+...+.. ..+.|+++|+||+|+....... ...+......+++++||++|.|++++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~-~~~l~~~~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADAL-IRAIADGTGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHH-HHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchh-HHHHHhcCCCceEEEEECCCCCHHHH
Confidence            899999999999999888654444433332 2379999999999997543221 12222222378999999999999999


Q ss_pred             HHHHHHHHh
Q 027593          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +.+|.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999999886

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.91  E-value=1.2e-24  Score=158.68  Aligned_cols=155  Identities=17%  Similarity=0.200  Sum_probs=111.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC-----------ccccccccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY   82 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g-----------~~~~~~~~~~~   82 (221)
                      +||+++|++|||||||+++|+.+.+...+.+  +++.......+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999888776544433  444444444433    689999999           55556666666


Q ss_pred             ccC-ccEEEEEEeCCChhhhccH-HHHHHH--------HHhh--cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---
Q 027593           83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---  147 (221)
Q Consensus        83 ~~~-~~~~i~v~d~~~~~s~~~~-~~~~~~--------~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---  147 (221)
                      +.. ++++++|+++.+..++.++ ..|...        +...  ..+.|+++|+||+|+.... ......++...+.   
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~  154 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS  154 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence            766 7777777777777777665 455432        1111  2479999999999997644 2233355555555   


Q ss_pred             ----eEEEeecCCCCChHHHHHHHHHHHhCCC
Q 027593          148 ----QYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       148 ----~~~~~s~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                          .++++||++|.|++++|.+|.+.+....
T Consensus       155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                4799999999999999999999886543

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=3.6e-24  Score=163.41  Aligned_cols=150  Identities=15%  Similarity=0.097  Sum_probs=110.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc----------cccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY   83 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~----------~~~~~~   83 (221)
                      .+|+++|.+|||||||+|+|++.....  ...+|++.......+...+..+.+|||||...+..          ....++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v--~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQRV--GNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEEE--EECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCCc--cCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            489999999999999999987665433  33345554444444443445899999999876654          334455


Q ss_pred             --cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        84 --~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                        ..+|++++|+|+++..++..+..++   ...  +.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~l---~~~--~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQL---FEL--GKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHHH---TTS--CSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHHH---HHc--CCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence              7899999999999976655443333   222  79999999999986432 333344566778899999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|..|.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999886

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.90  E-value=7.6e-24  Score=158.53  Aligned_cols=162  Identities=17%  Similarity=0.040  Sum_probs=114.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCccc----------ccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEK----------FGG   77 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~----------~~~   77 (221)
                      .....++|+|+|.+|+|||||+|+|+.+........+.+++.......+. ..+..+.+|||||...          +..
T Consensus        25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~  104 (223)
T 4dhe_A           25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQ  104 (223)
T ss_dssp             CCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHH
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHH
Confidence            34557899999999999999999988776444556667777766655555 5567899999999432          233


Q ss_pred             cccccccC---ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----HHHHHH-------
Q 027593           78 LRDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR-------  143 (221)
Q Consensus        78 ~~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~~~~~~-------  143 (221)
                      ....++..   +|++++|+|+++..+.. ...+...+..  .+.|+++|+||+|+........    ..+...       
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  181 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY  181 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence            44445444   78899999998753322 2234444443  3789999999999976332211    112222       


Q ss_pred             hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ....+++++||++|.|++++|.+|.+.+..
T Consensus       182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          182 AGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             CSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            256789999999999999999999998754

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=2.3e-22  Score=156.90  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=115.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc---------ccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRD   80 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~---------~~~~~~~   80 (221)
                      ..+..+|+|+|++|||||||+|++++.... ...+.++++.......+...+..+.+|||||..         .+.....
T Consensus         5 ~~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~   83 (301)
T 1ega_A            5 KSYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAAS   83 (301)
T ss_dssp             CCEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTT
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHH
Confidence            355678999999999999999997765432 233444555554444444456789999999987         2345556


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHHH-HHHHhcCc-eEEEeecCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~~-~~~~~~~~-~~~~~s~~~~  157 (221)
                      .++..+|++++|+|+++   +.....|+..... ..+.|+++++||+|+.. .....+.. .+....+. .++++|++++
T Consensus        84 ~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g  159 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG  159 (301)
T ss_dssp             SCCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT
T ss_pred             HHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC
Confidence            77889999999999976   3333333322211 13789999999999976 22222222 34444555 7999999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCc
Q 027593          158 YNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~  178 (221)
                      .|++++++.|...+...+..+
T Consensus       160 ~~v~~l~~~i~~~l~~~~~~~  180 (301)
T 1ega_A          160 LNVDTIAAIVRKHLPEATHHF  180 (301)
T ss_dssp             TTHHHHHHHHHTTCCBCCCSS
T ss_pred             CCHHHHHHHHHHhCCcCCCCC
Confidence            999999999999877666554

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.89  E-value=2e-23  Score=169.02  Aligned_cols=160  Identities=18%  Similarity=0.206  Sum_probs=110.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccccccc-------c
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLR-------D   80 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~~~~~-------~   80 (221)
                      .....++|+|+|+.|+|||||+++|+...+. ......+++.......+... ...+.+|||||+..+....       .
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~  108 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR  108 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence            4556799999999999999999997655442 22344555544443333211 2389999999998776553       3


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      .++..+|++++|+|+...   .....|...+...  +.|+++|+||+|+...........+....+++++++||++|.|+
T Consensus       109 ~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI  183 (423)
T 3qq5_A          109 RVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGF  183 (423)
T ss_dssp             HHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTST
T ss_pred             HHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence            368889999999998333   2234566666554  89999999999998755444444556667889999999999999


Q ss_pred             HHHHHHHHHHHhCC
Q 027593          161 EKPFLYLARKLAGD  174 (221)
Q Consensus       161 ~~~~~~l~~~l~~~  174 (221)
                      +++|..|.+.+...
T Consensus       184 ~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          184 DDIGKTISEILPGD  197 (423)
T ss_dssp             TTHHHHHHHHSCCC
T ss_pred             HHHHHHHHHhhhhh
Confidence            99999999988543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.88  E-value=4.7e-22  Score=158.83  Aligned_cols=160  Identities=19%  Similarity=0.135  Sum_probs=115.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc---------cccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG   81 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~---------~~~~   81 (221)
                      ...++|+++|++|||||||+++++.....  .....+.+.......+...+..+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            45689999999999999999997665432  111222232222223322356899999999754321         1112


Q ss_pred             cccCccEEEEEEeCCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCC
Q 027593           82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (221)
                      +...+|++++|+|+++..  ++.....|+..+.....+.|+++|+||+|+.......+....+...+++++++||++|.|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            345689999999998876  566677788877766558999999999999764333334455556788999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 027593          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 i~~~~~~l~~~l~  172 (221)
                      +++++.+|.+.+.
T Consensus       323 i~~l~~~i~~~l~  335 (357)
T 2e87_A          323 IDLVKEEIIKTLR  335 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.88  E-value=5.3e-23  Score=153.46  Aligned_cols=147  Identities=15%  Similarity=0.114  Sum_probs=100.5

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC-
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-   85 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~-   85 (221)
                      .....+.++|+|+|++|+|||||+++|+.+.+.........      +.........+.+|||||++.+...+..++.. 
T Consensus         6 ~~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   79 (218)
T 1nrj_B            6 IKQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP------LSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTR   79 (218)
T ss_dssp             ----CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC------EEETTGGGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred             CCccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc------eEEEEeeCceEEEEECCCcHHHHHHHHHHHHhc
Confidence            33456789999999999999999999887765432111111      11112245689999999999988888888776 


Q ss_pred             ---ccEEEEEEeCC-ChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCCCcccccH--------HHHHHHHhcCce
Q 027593           86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVKA--------KQVTFHRKKNLQ  148 (221)
Q Consensus        86 ---~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~i~v~nk~D~~~~~~~~--------~~~~~~~~~~~~  148 (221)
                         ++++++|+|++ +..+|.....|+..+...     ..+.|+++|+||+|+.......        +...++...++.
T Consensus        80 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~  159 (218)
T 1nrj_B           80 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKS  159 (218)
T ss_dssp             GGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcc
Confidence               89999999999 888998888887777553     2589999999999997643211        123445555678


Q ss_pred             EEEeecCCCCC
Q 027593          149 YYEISAKSNYN  159 (221)
Q Consensus       149 ~~~~s~~~~~~  159 (221)
                      ++++|+++|.+
T Consensus       160 ~~~~Sa~~~~~  170 (218)
T 1nrj_B          160 LNEVERKINEE  170 (218)
T ss_dssp             HHC--------
T ss_pred             ccccccccccc
Confidence            99999998765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.87  E-value=1.6e-22  Score=166.40  Aligned_cols=153  Identities=20%  Similarity=0.205  Sum_probs=109.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc-ccccc--------ccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYY   83 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~-~~~~~--------~~~~~   83 (221)
                      .++|+|+|.+|+|||||+|+|+.... .......++|.+.....+...+..+.+|||||.. .+...        ...++
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            48999999999999999999776543 2334455555555443333345679999999987 55432        23457


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHH
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~  163 (221)
                      ..+|++++|+|+++..++.....| ..    ..+.|+++|+||+|+... ...+........+.+++++||++|.|++++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~il-~~----l~~~piivV~NK~DL~~~-~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRKIL-ER----IKNKRYLVVINKVDVVEK-INEEEIKNKLGTDRHMVKISALKGEGLEKL  395 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHHHH-HH----HTTSSEEEEEEECSSCCC-CCHHHHHHHHTCSTTEEEEEGGGTCCHHHH
T ss_pred             hcccEEEEEecCCCCCCHHHHHHH-HH----hcCCCEEEEEECcccccc-cCHHHHHHHhcCCCcEEEEECCCCCCHHHH
Confidence            899999999999988777554322 22    247899999999999653 222222211123468999999999999999


Q ss_pred             HHHHHHHHh
Q 027593          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +.+|.+.+.
T Consensus       396 ~~~l~~~~~  404 (482)
T 1xzp_A          396 EESIYRETQ  404 (482)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHh
Confidence            999999765

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.3e-22  Score=166.14  Aligned_cols=155  Identities=20%  Similarity=0.190  Sum_probs=101.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc--------cccccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~--------~~~~~~~~~~   83 (221)
                      ..++|+++|.+|||||||+|+|++... ..+.+++|+|.+.....+...+..+.+|||||+.        .+...+..++
T Consensus         2 ~~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~   80 (436)
T 2hjg_A            2 GKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM   80 (436)
T ss_dssp             -CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence            347999999999999999999765443 4567788999888888887777899999999985        3455556678


Q ss_pred             cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc-eEEEeecCCCCChHH
Q 027593           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~  162 (221)
                      ..+|++++|+|+.+..++... .+...+..  .++|+++|+||+|+......  ..++. ..++ .++++||++|.|+.+
T Consensus        81 ~~ad~il~vvD~~~~~~~~d~-~~~~~l~~--~~~pvilv~NK~D~~~~~~~--~~~~~-~lg~~~~~~iSA~~g~gv~~  154 (436)
T 2hjg_A           81 DEADVIIFMVNGREGVTAADE-EVAKILYR--TKKPVVLAVNKLDNTEMRAN--IYDFY-SLGFGEPYPISGTHGLGLGD  154 (436)
T ss_dssp             HHCSEEEEEEETTTCSCHHHH-HHHHHHTT--CCSCEEEEEECCCC-----C--CCSSG-GGSSCCCEECBTTTTBTHHH
T ss_pred             HhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCccchhh--HHHHH-HcCCCCeEEEeCcCCCChHH
Confidence            899999999999987665432 22222322  47899999999998653211  11122 3344 789999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +++++...+..
T Consensus       155 L~~~i~~~l~~  165 (436)
T 2hjg_A          155 LLDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHHTGGG
T ss_pred             HHHHHHHhcCc
Confidence            99999998764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=6.5e-22  Score=162.10  Aligned_cols=154  Identities=17%  Similarity=0.169  Sum_probs=101.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---------ccccccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~   84 (221)
                      .+|+++|.+|||||||+|+|+.+.. .....++|+|.......+...+..+.+|||||....         ...+..++.
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            4799999999999999999776553 344567787777665555444567899999997642         233455689


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-HHHHHhcCc-eEEEeecCCCCChHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~~i~~  162 (221)
                      .+|++++|+|+++..+..+. .+...+..  .++|+++|+||+|+.... ..+. .++. .+++ .++++||++|.|+.+
T Consensus        81 ~ad~il~V~D~~~~~~~~d~-~i~~~l~~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~  155 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDE-SLADFLRK--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINLDT  155 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHH-HHHHHHHH--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSHHH
T ss_pred             hCCEEEEEEECCCCCCHHHH-HHHHHHHH--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCHHH
Confidence            99999999999876554321 11122222  279999999999985421 1122 2232 4555 789999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +++++.+.+..
T Consensus       156 L~~~i~~~l~~  166 (439)
T 1mky_A          156 MLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHhccc
Confidence            99999998864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.87  E-value=5.2e-22  Score=162.68  Aligned_cols=153  Identities=14%  Similarity=0.151  Sum_probs=99.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCcccccccc--------cc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~   81 (221)
                      ..++|+++|++|+|||||+|+|+..... ......+++....  .+.++  +..+.+|||||...+....        ..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhh
Confidence            4689999999999999999997765432 1223344443333  33333  4678999999976554322        33


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      ++..+|++++|+|++++.+... ..|...+    ...|+++|+||+|+...........+.  ...+++++|+++|.|++
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~  372 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGID  372 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHH
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHH
Confidence            5788999999999998765543 2333333    357999999999997543222111111  35689999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 027593          162 KPFLYLARKLAGD  174 (221)
Q Consensus       162 ~~~~~l~~~l~~~  174 (221)
                      +++.+|.+.+...
T Consensus       373 eL~~~i~~~~~~~  385 (462)
T 3geh_A          373 SLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.86  E-value=3.8e-22  Score=157.68  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=114.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCccc----cccccccccc---C
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGYYI---H   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~----~~~~~~~~~~---~   85 (221)
                      .+|+|+|.+|||||||+++++.....  ......+|..+....+... ...+.+|||||...    +..+...+++   .
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~  236 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER  236 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence            36899999999999999997655421  1222333333333233222 26899999999643    3334444544   4


Q ss_pred             ccEEEEEEeCCC---hhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCC
Q 027593           86 GQCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSN  157 (221)
Q Consensus        86 ~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~  157 (221)
                      ++++++|+|+++   ..++..+..|...+....   ..+|+++|+||+|+....  .....+.....  .+++++||+++
T Consensus       237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg  314 (342)
T 1lnz_A          237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTR  314 (342)
T ss_dssp             CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCS
T ss_pred             ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCC
Confidence            899999999998   788888888888887754   479999999999997532  12223344444  68999999999


Q ss_pred             CChHHHHHHHHHHHhCCCC
Q 027593          158 YNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~  176 (221)
                      .|+++++.+|.+.+...+.
T Consensus       315 ~gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          315 EGLRELLFEVANQLENTPE  333 (342)
T ss_dssp             STTHHHHHHHHHHHTSCCC
T ss_pred             cCHHHHHHHHHHHHhhCcc
Confidence            9999999999999876654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.86  E-value=1.9e-20  Score=151.87  Aligned_cols=163  Identities=17%  Similarity=0.118  Sum_probs=113.2

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE-------EEE---------e---cCeEEEEEEEe
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-------DFF---------T---NCGKIRFYCWD   68 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~-------~~~---------~---~~~~~~~~~~D   68 (221)
                      ...++.++|+++|++|+|||||+++|+....... ......+....       ...         .   ......+.+||
T Consensus         3 ~~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiD   81 (403)
T 3sjy_A            3 PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK-LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFID   81 (403)
T ss_dssp             CCCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS-SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEE
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCcccccc-cCccccceeeccccccccceecccccccccccccccccceEEEEE
Confidence            3567789999999999999999999765332210 00001000000       000         0   11237899999


Q ss_pred             CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH----HHHHh
Q 027593           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK  144 (221)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~----~~~~~  144 (221)
                      |||++.+...+..++..+|++++|+|+++..++.....++..+... ...|+++++||+|+.+.....+..    ++...
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~  160 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKG  160 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHh
Confidence            9999999888888899999999999999887666666666544433 346999999999997643222211    12211


Q ss_pred             ---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          145 ---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       145 ---~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                         .+++++++||++|.|+++++..|.+.+.
T Consensus       161 ~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          161 TWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             STTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             hCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence               2578999999999999999999998664

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.86  E-value=1.9e-21  Score=148.92  Aligned_cols=163  Identities=10%  Similarity=0.076  Sum_probs=103.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCC-CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccc------
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG------   81 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~------   81 (221)
                      ...+.++|+|+|++|||||||+++|++... .....++ +++.......+...+..+.+|||||...+......      
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            345679999999999999999999887653 2222222 13333333333334578999999998765433222      


Q ss_pred             -----cccCccEEEEEEeCCChhhhccHHH-HHHHHHhhc---CCCCEEEEEe-CCCCCcccccH-------H-HHHHHH
Q 027593           82 -----YYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVC---ENIPIVLCGN-KVDVKNRQVKA-------K-QVTFHR  143 (221)
Q Consensus        82 -----~~~~~~~~i~v~d~~~~~s~~~~~~-~~~~~~~~~---~~~p~i~v~n-k~D~~~~~~~~-------~-~~~~~~  143 (221)
                           +++.+|++++|+|++.   +..... +...+....   ...|.++++| |+|+.......       + ......
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~---~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~  173 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGR---YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVA  173 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTC---CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEEeCCC---CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHH
Confidence                 5678999999999985   332222 222333322   1457776676 99997532211       1 112333


Q ss_pred             hcCce---E--EEeecCCCCChHHHHHHHHHHHhCCC
Q 027593          144 KKNLQ---Y--YEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       144 ~~~~~---~--~~~s~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      ..+..   +  +++||+++.|++++|..|...+..++
T Consensus       174 ~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          174 ACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             HTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence            33322   2  78999999999999999999988766

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.86  E-value=5.1e-22  Score=162.57  Aligned_cols=158  Identities=16%  Similarity=0.153  Sum_probs=107.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc----------cccccc-
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD-   80 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~----------~~~~~~-   80 (221)
                      ..++|+++|.+|||||||+|+++..... ...+..|++.......+...+..+.+|||||+..          |...+. 
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~  252 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRAL  252 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHH
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHH
Confidence            4699999999999999999998765442 2334455565554433333345699999999843          222222 


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHH-HH-----HHHHhcCceEEEee
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAK-QV-----TFHRKKNLQYYEIS  153 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~-~~-----~~~~~~~~~~~~~s  153 (221)
                      .++..+|++++|+|+++..++.+. .|...+..  .+.|+++|+||+|+..... ..+ ..     .+....+++++++|
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  329 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMS  329 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECC
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEe
Confidence            367889999999999998887765 35554443  4799999999999975322 221 11     12223467999999


Q ss_pred             cCCCCChHHHHHHHHHHHhC
Q 027593          154 AKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |++|.|++++|..+.+.+..
T Consensus       330 A~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          330 ALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             TTTCTTGGGHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHHH
Confidence            99999999999999887763

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=6.2e-21  Score=144.32  Aligned_cols=166  Identities=10%  Similarity=0.022  Sum_probs=103.0

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc-----------c
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F   75 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~   75 (221)
                      +....+.++|+|+|++|||||||+|+|++..+.....+..+++.......+...+..+.+|||||...           +
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~  102 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEI  102 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHH
Confidence            34456689999999999999999999887766544444335555554444444456899999999442           2


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccc-c-------HHHHHHHHh
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-K-------AKQVTFHRK  144 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~-~-------~~~~~~~~~  144 (221)
                      ......++..++++++|+|++....  ....|+..+....   ...|+++|+||+|+..... .       .....+...
T Consensus       103 ~~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~  180 (239)
T 3lxx_A          103 IRCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDI  180 (239)
T ss_dssp             HHHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHH
Confidence            3333344567899999999874322  1223333333221   2469999999999854321 1       123456667


Q ss_pred             cCceEEEeecCCC-----CChHHHHHHHHHHHhCC
Q 027593          145 KNLQYYEISAKSN-----YNFEKPFLYLARKLAGD  174 (221)
Q Consensus       145 ~~~~~~~~s~~~~-----~~i~~~~~~l~~~l~~~  174 (221)
                      ++..++.++...+     .++.+++..+.+.+..+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~  215 (239)
T 3lxx_A          181 FGDRYCALNNKATGAEQEAQRAQLLGLIQRVVREN  215 (239)
T ss_dssp             HSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEEEECCCCccccHHHHHHHHHHHHHHHHHc
Confidence            7777777766643     68899999998877654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.85  E-value=4.3e-21  Score=161.40  Aligned_cols=158  Identities=14%  Similarity=0.154  Sum_probs=110.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCC--CCC-----------cccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----------KYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~   73 (221)
                      +..+|+|+|+.++|||||+++|+...  ...           ......|.|.......+     ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35789999999999999999987521  110           01123456665554444     3456899999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEE
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~  150 (221)
                      .|...+..++..+|++++|+|+++...+.....|......   +.|+++++||+|+..........++....+.   .++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi  159 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEM---DLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV  159 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHT---TCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHC---CCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence            9988888889999999999999998887777777665533   7899999999999764422222344444455   489


Q ss_pred             EeecCCCCChHHHHHHHHHHHh
Q 027593          151 EISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ++||++|.|+++++.+|.+.+.
T Consensus       160 ~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          160 RCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             EECTTTCTTHHHHHHHHHHHSC
T ss_pred             EeecccCCCchhHHHHHhhcCC
Confidence            9999999999999999998764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=3.5e-21  Score=152.68  Aligned_cols=114  Identities=13%  Similarity=0.119  Sum_probs=92.1

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~  127 (221)
                      .++.+.+|||+|++.++..|..++.+++++|+|+|+++          ..++.+...|+..+...  ..+.|+++++||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            46899999999999999999999999999999999999          45677777777776553  3679999999999


Q ss_pred             CCCccc----------------ccH-HHHHHHH-----------hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          128 DVKNRQ----------------VKA-KQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       128 D~~~~~----------------~~~-~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |+....                ... +...++.           ..++.++++||+++.|++++|.++.+.+.+
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            984321                222 2334443           356789999999999999999999998864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=3.6e-21  Score=158.40  Aligned_cols=160  Identities=16%  Similarity=0.149  Sum_probs=107.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC----------cccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g----------~~~~~~~~   79 (221)
                      ....++|+++|.+|+|||||+++|+.... .......+++.......+...+..+.+|||||          ++.+...+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            34579999999999999999999775432 23344556665554333333345899999999          45554443


Q ss_pred             c-ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhc-----CceEEE
Q 027593           80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKK-----NLQYYE  151 (221)
Q Consensus        80 ~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~-----~~~~~~  151 (221)
                      . .++..+|++++|+|+++..... ...|...+..  .+.|+++|+||+|+... ....+ ..+.+...     ++++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            3 3678899999999998753322 2234444433  47999999999999753 22222 22333322     579999


Q ss_pred             eecCCCCChHHHHHHHHHHHhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|..+.+.+..
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999987743

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.84  E-value=7.8e-21  Score=158.11  Aligned_cols=117  Identities=17%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCC------------------CCCc--ccCCceeEeeeEEEEecCeEEEEEEEeCCC
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGE------------------FEKK--YEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~------------------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g   71 (221)
                      +..+|+|+|++|+|||||+++|+...                  ....  .....|++.......+...+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            46799999999999999999976110                  0000  011244555555556665678999999999


Q ss_pred             cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      +..+...+..+++.+|++++|+|+++.........|.....   .+.|+++|+||+|+..
T Consensus        92 ~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           92 HADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHT---TTCCEEEEEECTTSCC
T ss_pred             chhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCEEEEEeCCCCcc
Confidence            99999888889999999999999998777666655543322   2789999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.84  E-value=1.3e-20  Score=158.16  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=112.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC--CCCC-----c------ccCCceeEeeeEEEEe-----cCeEEEEEEEeCCCcc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTG--EFEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~--~~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~~~~~D~~g~~   73 (221)
                      +..+|+++|+.++|||||+++|+..  ....     .      .....|.|.......+     ++..+.+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            3579999999999999999998752  1111     0      0112344444332222     3446899999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc---eEE
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~---~~~  150 (221)
                      .|...+..++..+|++++|+|+++...+.....|.....   .+.|+++++||+|+..........++....++   .++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi  161 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI  161 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence            998888888999999999999999887777777765543   37899999999999764422222334444454   489


Q ss_pred             EeecCCCCChHHHHHHHHHHHh
Q 027593          151 EISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ++||++|.|+++++++|.+.+.
T Consensus       162 ~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          162 LASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEeecCCCchHHHHHHHHhcc
Confidence            9999999999999999998764

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.84  E-value=8.5e-22  Score=163.42  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=109.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.++|+++|++|+|||||+++|....+.....++.+.+......... .+..+.+|||||++.|...+..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            35789999999999999999988665543332222222222222221 23478999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HHHHHH---HHh--cCceEEEeecCCCCChHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTF---HRK--KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~~~~~---~~~--~~~~~~~~s~~~~~~i~~~  163 (221)
                      |+|+++.........|... .  ..+.|+++++||+|+......   ......   ...  ..++++++||++|.|++++
T Consensus        82 VVDa~dg~~~qt~e~l~~~-~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           82 VVAADDGVMKQTVESIQHA-K--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             ECBSSSCCCHHHHHHHHHH-H--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EEECCCCccHHHHHHHHHH-H--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            9999986555443333222 1  137899999999998653211   111111   111  1358999999999999999


Q ss_pred             HHHHHHHHh
Q 027593          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +.+|...+.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999998654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.84  E-value=1e-20  Score=156.59  Aligned_cols=153  Identities=20%  Similarity=0.172  Sum_probs=102.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C---------------------------CcccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~   60 (221)
                      .++.+||+++|++|+|||||+++|+....  .                           .......|++.......+...
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~  109 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  109 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence            35679999999999999999999865411  0                           011123466666666666677


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhcc-----HHHHHHHHHhhcCCCCEEEEEeCCCCCcc-cc
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~i~v~nk~D~~~~-~~  134 (221)
                      +..+.+|||||++.|...+..++..+|++++|+|+++..++..     ...+...+.......|+++|+||+|+.+. ..
T Consensus       110 ~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~  189 (483)
T 3p26_A          110 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  189 (483)
T ss_dssp             SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHH
T ss_pred             CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHH
Confidence            7899999999999998888889999999999999998754322     12222222222344679999999998752 11


Q ss_pred             cHH-----HHHHHHhc-----CceEEEeecCCCCChHH
Q 027593          135 KAK-----QVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       135 ~~~-----~~~~~~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                      ..+     ...+....     .++++++||++|.|+.+
T Consensus       190 ~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          190 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            111     11222222     46899999999999975

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.84  E-value=3e-20  Score=145.34  Aligned_cols=117  Identities=14%  Similarity=0.102  Sum_probs=90.4

Q ss_pred             cCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEe
Q 027593           58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGN  125 (221)
Q Consensus        58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v~n  125 (221)
                      ...++.+++||++|++.++..|..++++++++++|+|++          +..++.+...|...+...  ..+.|+++++|
T Consensus       163 ~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~N  242 (327)
T 3ohm_A          163 DLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLN  242 (327)
T ss_dssp             EETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEE
T ss_pred             EeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEE
Confidence            335689999999999999999999999999999999665          555666666666655443  25799999999


Q ss_pred             CCCCCccc-----------------ccH-HHHHH----------HHhcCceEEEeecCCCCChHHHHHHHHHHHhCC
Q 027593          126 KVDVKNRQ-----------------VKA-KQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       126 k~D~~~~~-----------------~~~-~~~~~----------~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      |+|+....                 ... +...+          ....++.++++||+++.+++.+|..+...+.++
T Consensus       243 K~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          243 KKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             CHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            99985422                 122 22333          234567889999999999999999999988764

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.83  E-value=3.1e-20  Score=153.37  Aligned_cols=162  Identities=19%  Similarity=0.115  Sum_probs=108.0

Q ss_pred             CCCCccCCceEEEEEcCCCCcHHHHHHHHhcCC----CC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc
Q 027593            5 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR   79 (221)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~   79 (221)
                      .++...|+.++|+++|+.++|||||+++|+...    .. .......|+|.......+...+..+.+|||||++.+...+
T Consensus        11 ~~~~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~   90 (482)
T 1wb1_A           11 GRPHMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAV   90 (482)
T ss_dssp             --CCCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHH
T ss_pred             cchhhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHH
Confidence            356677889999999999999999999977554    11 0111223333332211222234789999999999888877


Q ss_pred             cccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH----HHHHHHHhc----Cce
Q 027593           80 DGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKK----NLQ  148 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~----~~~~~~~~~----~~~  148 (221)
                      ...+..+|++++|+|+++.   .+++.+    ..+..  .+.|.++++||+|+.+.....    +...+....    ..+
T Consensus        91 ~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~  164 (482)
T 1wb1_A           91 VSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSS  164 (482)
T ss_dssp             HHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCC
T ss_pred             HHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccce
Confidence            8889999999999999874   232222    22222  268889999999997532111    122333333    578


Q ss_pred             EEEeecCCCCChHHHHHHHHHHHh
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ++++||++|.|+++++..|.+.+.
T Consensus       165 ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          165 IIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHHhhc
Confidence            999999999999999999999764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.83  E-value=3.5e-20  Score=151.80  Aligned_cols=158  Identities=19%  Similarity=0.176  Sum_probs=101.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc------------
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------   79 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~------------   79 (221)
                      ..++|+|+|++|||||||+|++++... ....+..|++.......+...+..+.+|||+|........            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            458999999999999999999665433 3344556666655443333233478899999975432221            


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHH------HHHHhcCceEEEe
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV------TFHRKKNLQYYEI  152 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~------~~~~~~~~~~~~~  152 (221)
                      ..++..++++++++|+++..+.... .+...+..  .+.|+++|+||+|+.... ...+..      .+....+.+++++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  334 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence            2246678999999999887665432 22222222  379999999999986532 222211      1222335789999


Q ss_pred             ecCCCCChHHHHHHHHHHHhC
Q 027593          153 SAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ||++|.|++++|..+.+.+..
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.83  E-value=5.9e-21  Score=157.09  Aligned_cols=158  Identities=18%  Similarity=0.143  Sum_probs=102.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCC--------ccccccccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRD   80 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g--------~~~~~~~~~   80 (221)
                      ..|...+|+|+|.+|||||||+|+|++... .....++|++.......+...+..+.+|||||        +..+.....
T Consensus        19 ~~m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~   97 (456)
T 4dcu_A           19 SHMGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAE   97 (456)
T ss_dssp             ----CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHH
T ss_pred             hhcCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHH
Confidence            457788999999999999999999765543 35567889999988888888888999999999        555666667


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC-ceEEEeecCCCCC
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN  159 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~  159 (221)
                      .++..+|++++|+|+.+...  ....|+..+... .++|+++|+||+|+.....  ...++. ..+ ...+.+||.+|.|
T Consensus        98 ~~~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~~--~~~e~~-~lg~~~~~~iSA~~g~g  171 (456)
T 4dcu_A           98 IAMDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLG  171 (456)
T ss_dssp             HHHHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSG-GGSSSSEEECCTTTCTT
T ss_pred             hhHhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhhh--hHHHHH-HcCCCceEEeecccccc
Confidence            77889999999999876433  223333332222 4799999999999864321  111111 222 2567999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      +.+++..+...+..
T Consensus       172 v~~L~~~i~~~l~~  185 (456)
T 4dcu_A          172 LGDLLDAVAEHFKN  185 (456)
T ss_dssp             HHHHHHHHHTTGGG
T ss_pred             hHHHHHHHHhhccc
Confidence            99999999887643

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=1.6e-19  Score=147.59  Aligned_cols=158  Identities=16%  Similarity=0.148  Sum_probs=107.1

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCC--CC---------------------------cccCCceeEeeeEEEEec
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTN   58 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~   58 (221)
                      ....+.++|+++|++++|||||+++|+....  ..                           ......|++.......+.
T Consensus        12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~   91 (439)
T 3j2k_7           12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE   91 (439)
T ss_pred             CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence            3456789999999999999999999754211  00                           111234666666666666


Q ss_pred             CeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhh---hccHHHHHHHHHhh-cCCCC-EEEEEeCCCCCccc
Q 027593           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQ  133 (221)
Q Consensus        59 ~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~~~~~~~~~~~~~~-~~~~p-~i~v~nk~D~~~~~  133 (221)
                      ..+..+.+|||||++.|...+..++..+|++++|+|+++...   |.....+...+... ..+.| +++++||+|+....
T Consensus        92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~  171 (439)
T 3j2k_7           92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVN  171 (439)
T ss_pred             cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccc
Confidence            667899999999999998888888999999999999998642   22111222221111 12566 89999999985421


Q ss_pred             cc--------HHHHHHHHhc------CceEEEeecCCCCChHHHHH
Q 027593          134 VK--------AKQVTFHRKK------NLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus       134 ~~--------~~~~~~~~~~------~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ..        .+...+....      .++++++||++|.|+.+++.
T Consensus       172 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          172 WSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            11        1111233232      35799999999999998654

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.82  E-value=1.2e-20  Score=137.99  Aligned_cols=118  Identities=16%  Similarity=0.142  Sum_probs=87.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccC----
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH----   85 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~----   85 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+.......     . .+...+.....+.+|||||+..+...+..++..    
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-----~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~  118 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-----E-PLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKF  118 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-----C-CceeeeecCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence            456799999999999999999998877653311100     0 011112245678999999999888877777765    


Q ss_pred             ccEEEEEEeCC-ChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCccc
Q 027593           86 GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        86 ~~~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~  133 (221)
                      ++++++|+|++ +..++..+..|+..+....     .+.|+++|+||+|+....
T Consensus       119 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          119 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             EEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             CCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            89999999999 8999988888877665432     479999999999997643

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.82  E-value=3.1e-19  Score=144.90  Aligned_cols=162  Identities=15%  Similarity=0.096  Sum_probs=99.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccC--CceeEeeeEEEEe-------------c--C----eEEEEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY   65 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   65 (221)
                      ..+.++|+++|+.++|||||+++|++..   +.....+  |....+.......             .  +    ....+.
T Consensus         5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999976322   1111112  2222222222211             1  1    137899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHH-HHHH
Q 027593           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAK-QVTF  141 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~-~~~~  141 (221)
                      +|||||++.|...+...+..+|++++|+|+++..........+..+ ......|+++++||+|+.....   ..+ ..++
T Consensus        85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~  163 (408)
T 1s0u_A           85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL-EILGIDKIIIVQNKIDLVDEKQAEENYEQIKEF  163 (408)
T ss_dssp             EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH-HHTTCCCEEEEEECTTSSCTTTTTTHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH-HHcCCCeEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            9999999988776666778889999999999643111111122211 2223468999999999975332   112 2233


Q ss_pred             HHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       142 ~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ...   .+.+++++||++|.|+++++..|...+.
T Consensus       164 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          164 VKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             HTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            332   3678999999999999999999998654

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.82  E-value=3.9e-20  Score=146.66  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~  127 (221)
                      ..+.+++|||+|++.++..+..++++++++++|+|++          +..+|.+...|...+...  .++.|+++++||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          778888888888777653  3689999999999


Q ss_pred             CCCcccc-----------------------cHHHHHHHHh----------------cCceEEEeecCCCCChHHHHHHHH
Q 027593          128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus       128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+.....                       ..+...++..                ..+.++++||+++.|++++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9843211                       1122233221                234578999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88753

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.82  E-value=3.1e-21  Score=157.81  Aligned_cols=154  Identities=19%  Similarity=0.202  Sum_probs=101.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCcc---------------------------cCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~   60 (221)
                      .++.++|+++|+.|+|||||+++|+..  .+....                           ....|+|.......+...
T Consensus         3 ~k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~   82 (435)
T 1jny_A            3 QKPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETK   82 (435)
T ss_dssp             -CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECS
T ss_pred             CCCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecC
Confidence            456799999999999999999998753  221110                           012344555444455566


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHh------hcCCCCEEEEEeCCCCCcccc
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR------VCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~------~~~~~p~i~v~nk~D~~~~~~  134 (221)
                      +..+.+|||||+..|...+..++..+|++++|+|+++ .+|++...|......      .....|+++++||+|+.+...
T Consensus        83 ~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~  161 (435)
T 1jny_A           83 KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPY  161 (435)
T ss_dssp             SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTT
T ss_pred             CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccc
Confidence            7889999999999998888888999999999999998 666644332222111      112346899999999976211


Q ss_pred             --------cHHHHHHHHhcC-----ceEEEeecCCCCChHHHH
Q 027593          135 --------KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       135 --------~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~~  164 (221)
                              ..+...+....+     ++++++||++|.|+.+++
T Consensus       162 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          162 DEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             cHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence                    112223444444     789999999999997654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.82  E-value=4.4e-20  Score=156.19  Aligned_cols=154  Identities=19%  Similarity=0.170  Sum_probs=104.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----------------------------cCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------------------------EPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|++|+|||||+++|+.....-..                             ....|+|.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            456899999999999999999998754221100                             002455666555556666


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhccHHHHHHH--HHhhcCCCCEEEEEeCCCCCcc-cc
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNR-QV  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~p~i~v~nk~D~~~~-~~  134 (221)
                      +..+.+|||||++.+...+..++..+|++++|+|+++..   +|.....+...  +.......|+++|+||+|+... ..
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence            789999999999999888888899999999999999752   22111222222  2222234569999999999752 11


Q ss_pred             cH-----HHHHHHHhc-----CceEEEeecCCCCChHHH
Q 027593          135 KA-----KQVTFHRKK-----NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       135 ~~-----~~~~~~~~~-----~~~~~~~s~~~~~~i~~~  163 (221)
                      ..     +...+....     .++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            11     111222222     468999999999999865

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.81  E-value=1.3e-19  Score=144.48  Aligned_cols=158  Identities=18%  Similarity=0.093  Sum_probs=102.1

Q ss_pred             ceE-EEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCeEEEEEEEeCCCccc---------cccccc
Q 027593           13 SFK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEK---------FGGLRD   80 (221)
Q Consensus        13 ~~~-i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~D~~g~~~---------~~~~~~   80 (221)
                      .++ |+++|++|||||||+|++++...  ......+.|....  .+.+.+  ..+.+|||+|...         +... .
T Consensus       178 ~~~~V~lvG~~naGKSTLln~L~~~~~--~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l  252 (364)
T 2qtf_A          178 NIPSIGIVGYTNSGKTSLFNSLTGLTQ--KVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-L  252 (364)
T ss_dssp             -CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-H
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCc--cccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-H
Confidence            355 99999999999999999776543  2223334444333  344444  6789999999632         1111 2


Q ss_pred             ccccCccEEEEEEeCCChh--hhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccH---HHHHHHHhc---CceEEE
Q 027593           81 GYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYE  151 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~---~~~~~~~~~---~~~~~~  151 (221)
                      ..+..+|++++|+|+++..  ....+..|...+.... .+.|+++|+||+|+.......   ....+....   ...+++
T Consensus       253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~  332 (364)
T 2qtf_A          253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIP  332 (364)
T ss_dssp             HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEE
T ss_pred             HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEE
Confidence            2367899999999999876  5555555555554432 578999999999986533111   111122333   346899


Q ss_pred             eecCCCCChHHHHHHHHHHHhCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      +|++++.|+++++..|.+.+...+
T Consensus       333 ~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          333 ISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EECCCCcCHHHHHHHHHHHhcccC
Confidence            999999999999999998775533

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.81  E-value=8.8e-20  Score=145.14  Aligned_cols=114  Identities=14%  Similarity=0.102  Sum_probs=84.4

Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~  127 (221)
                      .++.+.+|||+|++.++..|..++.+++++|+|+|+++          ..++.+...|...+...  ..+.|+++++||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            45889999999999999999999999999999999999          67888888888777653  3689999999999


Q ss_pred             CCCccc-----------------ccHH-HHHHH--------H---hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          128 DVKNRQ-----------------VKAK-QVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       128 D~~~~~-----------------~~~~-~~~~~--------~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      |+....                 ...+ ...++        .   ..++.++++||+++.|++++|.++...+.+
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            985311                 2222 22322        1   346789999999999999999999988754

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.81  E-value=7.7e-20  Score=147.94  Aligned_cols=158  Identities=13%  Similarity=0.035  Sum_probs=109.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      +.++|+++|+.++|||||+++|+...       +..       ......|.|.......+......+.+|||||+..|..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            57899999999999999999987531       110       0112345566555555555668899999999998877


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC-----
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN-----  146 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~-----  146 (221)
                      .+..++..+|++++|+|+++.........| ..+..  .+.| +++++||+|+......     .+..++....+     
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            777888999999999999986443333233 22222  2677 6899999999742111     12223444444     


Q ss_pred             ceEEEeecCCCCC----------hHHHHHHHHHHHh
Q 027593          147 LQYYEISAKSNYN----------FEKPFLYLARKLA  172 (221)
Q Consensus       147 ~~~~~~s~~~~~~----------i~~~~~~l~~~l~  172 (221)
                      ++++++||++|.+          +.++++.|.+.+.
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            6899999998664          7888888887654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.81  E-value=1.1e-18  Score=141.86  Aligned_cols=162  Identities=15%  Similarity=0.090  Sum_probs=105.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCC---CCCcccC--CceeEeeeEEEEe-------------c--C----eEEEEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFY   65 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~~~   65 (221)
                      ..+.++|+++|+.++|||||+++|++..   +.....+  |....+.......             .  +    ....+.
T Consensus         7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   86 (410)
T 1kk1_A            7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   86 (410)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence            4567999999999999999999976322   1222222  3322222222211             0  1    137899


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc---HH-HHHH
Q 027593           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AK-QVTF  141 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~---~~-~~~~  141 (221)
                      +|||||+..|...+...+..+|++++|+|+++..........+..+. .....|+++++||+|+......   .+ ...+
T Consensus        87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~~~~~iivviNK~Dl~~~~~~~~~~~~i~~~  165 (410)
T 1kk1_A           87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQ-IIGQKNIIIAQNKIELVDKEKALENYRQIKEF  165 (410)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             EEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHH-HcCCCcEEEEEECccCCCHHHHHHHHHHHHHH
Confidence            99999999887766666788899999999996431111111111111 2234689999999999764321   11 1223


Q ss_pred             HHh---cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       142 ~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ...   ...+++++||++|.|+++++..|...+.
T Consensus       166 l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          166 IEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            322   3678999999999999999999998654

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.81  E-value=3.9e-19  Score=149.64  Aligned_cols=156  Identities=21%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeeeEEE------------EecCeEEEEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~~~~~D~~g~~~   74 (221)
                      ++.++|+++|++|+|||||+++|+.......    ...+.+.++.....            .++.....+.+|||||+..
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            4568999999999999999999876443221    12233322221100            0001123599999999999


Q ss_pred             ccccccccccCccEEEEEEeCCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc--------------H-
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A-  136 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~--------------~-  136 (221)
                      |...+..++..+|++++|+|+++   +.++..+..    +..  .+.|+++++||+|+......              . 
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            99999888999999999999998   445443322    111  37899999999998642100              0 


Q ss_pred             ----------HHHHHHHh---------------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          137 ----------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 ----------~~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                                +.......               ..++++++||++|.|+++++.+|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      00011111               1248999999999999999999998664

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.80  E-value=7.3e-20  Score=141.12  Aligned_cols=158  Identities=16%  Similarity=0.207  Sum_probs=87.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCC-Ccc-------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-----
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-----   77 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-----   77 (221)
                      ...++|+|+|.+|+|||||+|+++..... ..+       .++.+.+.....+..++..+.+.+|||||......     
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            34799999999999999999996544332 222       34444444444444455557999999999732211     


Q ss_pred             --cc-------cccc-------------cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593           78 --LR-------DGYY-------------IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (221)
Q Consensus        78 --~~-------~~~~-------------~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~  135 (221)
                        ..       ..++             ..+|+++++++.+.......-..++..+..   ..|+++|+||+|+......
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence              11       1111             136788888876653222222234444433   7999999999998643222


Q ss_pred             H----HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .    ...+.....+++++.+|+.++.|+.+++.+|...+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1    12234456688999999999999999998888754

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.80  E-value=1.8e-19  Score=144.11  Aligned_cols=143  Identities=7%  Similarity=-0.036  Sum_probs=104.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      +|+++|++++|||||+++|+          ..|.|.......+...+..+.+|||||+++|.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999965          33445444455555566789999999999887777777899999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcCCCCE-EEEEe-CCCCCcccccH----HHHHHHHhc---CceEEE--eecCC---CCCh
Q 027593           95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF  160 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~n-k~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~~i  160 (221)
                       + ...+.....+.......  +.|. ++++| |+|+ +.....    +..++....   .+++++  +||++   +.|+
T Consensus        93 -~-~g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           93 -P-QGLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             -T-TCCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             -C-CCCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence             4 33344444444443332  6777 88999 9999 432211    112233322   368999  99999   9999


Q ss_pred             HHHHHHHHHHHh
Q 027593          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      ++++..|...+.
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999988754

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.80  E-value=5.6e-20  Score=144.30  Aligned_cols=118  Identities=13%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             EecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCC----------ChhhhccHHHHHHHHHhh--cCCCCEEEE
Q 027593           56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLC  123 (221)
Q Consensus        56 ~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~i~v  123 (221)
                      .+...++.+++||++|++.++..|..++++++++++|+|++          +..++.+...|...+...  ..+.|++++
T Consensus       155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv  234 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF  234 (340)
T ss_dssp             EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred             EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence            34446689999999999999999999999999999999998          677777777777766543  368999999


Q ss_pred             EeCCCCCcccc-----------------cHHHHHHHH----------------h-----------cCceEEEeecCCCCC
Q 027593          124 GNKVDVKNRQV-----------------KAKQVTFHR----------------K-----------KNLQYYEISAKSNYN  159 (221)
Q Consensus       124 ~nk~D~~~~~~-----------------~~~~~~~~~----------------~-----------~~~~~~~~s~~~~~~  159 (221)
                      +||+|+.....                 ..+...+..                .           ..+.++++||+++.+
T Consensus       235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n  314 (340)
T 4fid_A          235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN  314 (340)
T ss_dssp             EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred             EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence            99999853211                 111211111                1           247889999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027593          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 i~~~~~~l~~~l~~  173 (221)
                      ++.+|..+...+.+
T Consensus       315 v~~vF~~v~~~Il~  328 (340)
T 4fid_A          315 IKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998875

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.80  E-value=9.2e-20  Score=147.91  Aligned_cols=160  Identities=14%  Similarity=0.064  Sum_probs=111.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcC--------CCCCc-------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ..++.++|+++|++|+|||||+++|+..        .+...       .....|.+.......+......+.+|||||+.
T Consensus         7 ~~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~   86 (405)
T 2c78_A            7 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA   86 (405)
T ss_dssp             --CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred             CCCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence            3567899999999999999999998762        11110       01234566666566666667889999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC-
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN-  146 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~-  146 (221)
                      .|...+..++..+|++++|+|+++..... ...++..+..  .+.| +++++||+|+......     .+...+....+ 
T Consensus        87 ~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~--~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~  163 (405)
T 2c78_A           87 DYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEF  163 (405)
T ss_dssp             GGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHH--TTCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcc
Confidence            98877788889999999999998864332 3344443333  2677 8899999999742111     12223444433 


Q ss_pred             ----ceEEEeecCCCCC------------------hHHHHHHHHHHH
Q 027593          147 ----LQYYEISAKSNYN------------------FEKPFLYLARKL  171 (221)
Q Consensus       147 ----~~~~~~s~~~~~~------------------i~~~~~~l~~~l  171 (221)
                          .+++++||++|.|                  +.++++.|...+
T Consensus       164 ~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          164 PGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             CTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             cccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence                6899999999876                  667777666644

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.80  E-value=2.3e-20  Score=153.70  Aligned_cols=153  Identities=14%  Similarity=0.179  Sum_probs=105.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.++|+++|+.++|||||+++|+.+.+....  ..|+|.+.....+...+..+.+|||||++.|...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e--~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGE--AGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTT--BCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcccc--CCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            5689999999999999999998765443222  12333332222333344578999999999999998888999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHH---HHHHhc--CceEEEeecCCCCChHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~---~~~~~~--~~~~~~~s~~~~~~i~~~  163 (221)
                      |+|+++.........|. ....  .+.|+++++||+|+.....   .....   .+....  .++++++||++|.|++++
T Consensus        81 VVda~~g~~~qT~e~l~-~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAIQ-HAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             EEETTTBSCTTTHHHHH-HHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             EeecccCccHHHHHHHH-HHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence            99998864433333332 2221  3789999999999964211   11100   011122  368999999999999999


Q ss_pred             HHHHHH
Q 027593          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      +.+|..
T Consensus       158 le~I~~  163 (501)
T 1zo1_I          158 LDAILL  163 (501)
T ss_dssp             HHHTTT
T ss_pred             hhhhhh
Confidence            988764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.80  E-value=7.1e-20  Score=146.16  Aligned_cols=162  Identities=17%  Similarity=0.266  Sum_probs=85.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC-CCccc--------CCceeEeeeEEEEecCeEEEEEEEeCCCc-------cc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~-------~~   74 (221)
                      ...++|+|+|++|+|||||+++++.... ...+.        ++.+...........+....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            3468999999999999999999554322 22111        23333333333333455678999999998       55


Q ss_pred             cccccc-------ccccCccE-----------EEEEEeCCC-hhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCcccc
Q 027593           75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        75 ~~~~~~-------~~~~~~~~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~~  134 (221)
                      +...+.       .++...++           .+++|++++ ..++..+. .|+..+   ..+.|+|+|+||+|+.....
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            555544       44433322           235555544 45666554 333333   35789999999999975322


Q ss_pred             cH----HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCC
Q 027593          135 KA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       135 ~~----~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~  176 (221)
                      ..    +....+...+++++++|++++.+ ++.|..+.+.+.....
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence            21    23345566788999999999998 8888888888766443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.79  E-value=5.4e-19  Score=130.86  Aligned_cols=161  Identities=12%  Similarity=0.000  Sum_probs=97.4

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc----------cc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GG   77 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~----------~~   77 (221)
                      ....+..+|+++|++|||||||++++++..+...+.++.|.+.......+.+   .+.+|||||....          ..
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~   97 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQR   97 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHH
Confidence            3445678999999999999999999665554455566777666544443332   5789999997421          11


Q ss_pred             cccccc---cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc----HHHHHHHHhc--Cce
Q 027593           78 LRDGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK--NLQ  148 (221)
Q Consensus        78 ~~~~~~---~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~----~~~~~~~~~~--~~~  148 (221)
                      ....++   ..++++++++|+++..++... .....+..  .+.|.++++||+|+......    .....+....  .+.
T Consensus        98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~  174 (210)
T 1pui_A           98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  174 (210)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             HHHHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCc
Confidence            122233   467899999999886554321 11111211  37899999999998653211    1222333333  357


Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      ++++|++++.++++++..|.+.+...
T Consensus       175 ~~~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          175 VETFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             eEEEeecCCCCHHHHHHHHHHHHhhc
Confidence            89999999999999999998876443

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.79  E-value=8.3e-20  Score=150.42  Aligned_cols=155  Identities=18%  Similarity=0.206  Sum_probs=91.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc---------------------------ccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|+.++|||||+++|+.  +.+...                           .....|.|.......+...
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            35678999999999999999999764  222100                           0012234443332333334


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCCh---hhhccHHHHHHHHHhh-cCCCC-EEEEEeCCCCCcccc-
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRV-CENIP-IVLCGNKVDVKNRQV-  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~---~s~~~~~~~~~~~~~~-~~~~p-~i~v~nk~D~~~~~~-  134 (221)
                      +..+.+|||||++.|...+...+..+|++++|+|+++.   .+|.....|...+... ..+.| +++++||+|+..... 
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            67899999999999988888889999999999999987   3555333333333222 23666 999999999954211 


Q ss_pred             -------cHHHHHHHHhc-------CceEEEeecCCCCChHHHH
Q 027593          135 -------KAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       135 -------~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~  164 (221)
                             ..+...+....       .++++++|+++|.|+.+++
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                   11222333333       4679999999999998754

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.79  E-value=8.6e-19  Score=140.53  Aligned_cols=113  Identities=15%  Similarity=0.121  Sum_probs=91.1

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCCC
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD  128 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D  128 (221)
                      ++.+++|||+|++.++..|..++++++++|+|||+++          ..+|.+...|+..+...  .++.|++|++||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            4889999999999999999999999999999999999          88999988898887664  36789999999999


Q ss_pred             CCcccc--------------------------------cHHHHHH-----HHh--------cCceEEEeecCCCCChHHH
Q 027593          129 VKNRQV--------------------------------KAKQVTF-----HRK--------KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       129 ~~~~~~--------------------------------~~~~~~~-----~~~--------~~~~~~~~s~~~~~~i~~~  163 (221)
                      +.....                                ..+...+     ...        ..+.++++||+++.|++.+
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            843211                                0111222     111        3567889999999999999


Q ss_pred             HHHHHHHHhC
Q 027593          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |.++...+.+
T Consensus       376 F~~v~~~I~~  385 (402)
T 1azs_C          376 FNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.79  E-value=4.3e-19  Score=145.11  Aligned_cols=151  Identities=19%  Similarity=0.180  Sum_probs=101.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC--CCc----------ccCC-------------------ceeEeeeEEEEecC
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC   59 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~   59 (221)
                      .+.++|+++|+.++|||||+++|+.+..  ...          ...+                   .|++.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4569999999999999999999875431  000          0011                   23333333334445


Q ss_pred             eEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-c----
Q 027593           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V----  134 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~----  134 (221)
                      ....+.+|||||++.|...+..++..+|++++|+|+++..... ...++..... ....|+++|+||+|+.+.. .    
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHH
Confidence            5678999999999998887778899999999999999864322 2233332222 2234689999999997521 1    


Q ss_pred             -cHHHHHHHHhcC-----ceEEEeecCCCCChHHH
Q 027593          135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (221)
Q Consensus       135 -~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~  163 (221)
                       ..+...+....+     .+++++||++|.|+.++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence             112224445555     78999999999999874

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=1.3e-18  Score=149.21  Aligned_cols=127  Identities=21%  Similarity=0.186  Sum_probs=89.2

Q ss_pred             CCCCCCCCccCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc--c------------cCCceeEeeeEEEEecCeEEEE
Q 027593            1 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--Y------------EPTIGVEVHPLDFFTNCGKIRF   64 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~   64 (221)
                      |++.-+ ....+..+|+|+|++|+|||||+++|+.  +.....  .            ....+.+.......+...+..+
T Consensus         1 M~~~l~-~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i   79 (691)
T 1dar_A            1 MAVKVE-YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI   79 (691)
T ss_dssp             CCTTCC-CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred             CCcccc-CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence            666432 3456679999999999999999999873  211100  0            0022344444444444456889


Q ss_pred             EEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        65 ~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      .+|||||+..+...+..++..+|++++|+|+++...+.....|.....   .+.|+++++||+|+..
T Consensus        80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH---TTCCEEEEEECTTSTT
T ss_pred             EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHH---cCCCEEEEEECCCccc
Confidence            999999999888888888999999999999999877776666654332   2899999999999864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.77  E-value=5.5e-19  Score=137.77  Aligned_cols=159  Identities=12%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCce----------------------eEee------------
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------   51 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~----------------------~~~~------------   51 (221)
                      ....++|+|+|.+|||||||+|+|++..+.+..    ...++                      ++..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999998877653211    11122                      1110            


Q ss_pred             -----------eEEEEec-CeEEEEEEEeCCCccc-------------ccccccccccCccEEE-EEEeCCChhhhccHH
Q 027593           52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP  105 (221)
Q Consensus        52 -----------~~~~~~~-~~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i-~v~d~~~~~s~~~~~  105 (221)
                                 ...+.+. .....+.+|||||...             +......++..++.++ +|+|+++........
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       0011111 1136799999999642             2334455677787666 799998765555433


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHHH---HHhcC-ceEEEeecCCCCChHHHHHHHHHH
Q 027593          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF---HRKKN-LQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~~---~~~~~-~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      .+...+..  .+.|+++|+||+|+..... ..+..+.   ....+ .+++++||++|.|+++++..|.+.
T Consensus       183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            44444432  3789999999999975332 2222211   01112 468889999999999999998873

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=1.7e-18  Score=144.29  Aligned_cols=119  Identities=17%  Similarity=0.156  Sum_probs=81.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC-CC-------------------cccCCceeEeeeEEEEecCeEEEEEEEeC
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDT   69 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~-~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~   69 (221)
                      ..+.++|+++|++|+|||||+++|+.... ..                   ......|++.......+...+..+.+|||
T Consensus        10 ~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT   89 (529)
T 2h5e_A           10 VAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT   89 (529)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred             hcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence            34679999999999999999999875211 00                   01123445555445555556789999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      ||+..+......++..+|++++|+|+++...... ..+.....  ..+.|+++++||+|+..
T Consensus        90 PG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~--~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           90 PGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR--LRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT--TTTCCEEEEEECTTSCC
T ss_pred             CCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH--HcCCCEEEEEcCcCCcc
Confidence            9999988888888999999999999987632211 11111111  13789999999999864

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.77  E-value=3.9e-19  Score=146.13  Aligned_cols=152  Identities=15%  Similarity=0.183  Sum_probs=102.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc---------------------------ccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   60 (221)
                      .++.++|+++|++++|||||+++|+..  .+...                           .....|++.......+...
T Consensus         4 ~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~   83 (458)
T 1f60_A            4 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (458)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence            456799999999999999999998753  11110                           0012344544444455556


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hhcc---HHHHHHHHHhhcCCCC-EEEEEeCCCCCc-c
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN---VPTWHRDLCRVCENIP-IVLCGNKVDVKN-R  132 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~p-~i~v~nk~D~~~-~  132 (221)
                      ...+.+|||||+..|...+..++..+|++++|+|+++..   +|..   ...+......  .+.| +++++||+|+.. .
T Consensus        84 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~  161 (458)
T 1f60_A           84 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWD  161 (458)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTC
T ss_pred             CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCC
Confidence            788999999999998888888899999999999999763   4432   1122211111  2555 899999999973 1


Q ss_pred             ccc-----HHHHHHHHhcC-----ceEEEeecCCCCChHHH
Q 027593          133 QVK-----AKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (221)
Q Consensus       133 ~~~-----~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~  163 (221)
                      ...     .+...+....+     ++++++||++|.|+.++
T Consensus       162 ~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          162 ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            111     11223333333     68999999999998753

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.77  E-value=1.9e-19  Score=151.92  Aligned_cols=151  Identities=21%  Similarity=0.205  Sum_probs=80.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCC--C-------------------------C--cccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--E-------------------------K--KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~--~-------------------------~--~~~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|++++|||||+++|+....  .                         .  ......|+|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            45678999999999999999999753110  0                         0  00113456666666666666


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh---hh--ccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcc-c
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-Q  133 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~-~  133 (221)
                      +..+.+|||||+..|...+...+..+|++++|+|+++..   ++  .........+.... +.| +++|+||+|+... .
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SCCCEEEEEECGGGGTTCH
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CCCeEEEEEeccccccccH
Confidence            789999999999999888888899999999999998753   22  22122221222222 454 8999999998641 1


Q ss_pred             ccH-----HHHHHH-HhcC-----ceEEEeecCCCCChH
Q 027593          134 VKA-----KQVTFH-RKKN-----LQYYEISAKSNYNFE  161 (221)
Q Consensus       134 ~~~-----~~~~~~-~~~~-----~~~~~~s~~~~~~i~  161 (221)
                      ...     +...+. ...+     ++++++||++|.|+.
T Consensus       333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            111     112222 2233     479999999999997

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.77  E-value=1.5e-18  Score=152.87  Aligned_cols=160  Identities=14%  Similarity=0.052  Sum_probs=109.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCC-------CCC-------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      ..++.++|+++|+.++|||||+++|+...       +..       ....+.|+|+......+......+.+|||||++.
T Consensus       292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed  371 (1289)
T 3avx_A          292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD  371 (1289)
T ss_dssp             CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred             ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence            35678999999999999999999987531       000       1123556666655555666678999999999999


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccccc-----HHHHHHHHhcC--
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK-----AKQVTFHRKKN--  146 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~~~-----~~~~~~~~~~~--  146 (221)
                      |...+..++..+|++++|+|+++..... ...++..+...  +.| +++++||+|+......     .+...+....+  
T Consensus       372 F~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~  448 (1289)
T 3avx_A          372 YVKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFP  448 (1289)
T ss_dssp             HHHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcccc
Confidence            8877778889999999999999875433 33344333332  677 7899999999752211     12223444443  


Q ss_pred             ---ceEEEeecCCC--------CChHHHHHHHHHHH
Q 027593          147 ---LQYYEISAKSN--------YNFEKPFLYLARKL  171 (221)
Q Consensus       147 ---~~~~~~s~~~~--------~~i~~~~~~l~~~l  171 (221)
                         ++++++|+++|        .|+.++++.|...+
T Consensus       449 ~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          449 GDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             ccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence               68999999998        46788888887754

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.76  E-value=4.3e-18  Score=145.59  Aligned_cols=117  Identities=19%  Similarity=0.124  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccC----------------CceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      .+..+|+|+|++|+|||||+++|+..........                ..++++......+...++.+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            4567999999999999999999874222100000                124455555555655678999999999999


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      +...+..+++.+|++++|+|+++....... .+......  .+.|+++++||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence            888888889999999999998876443333 22232322  379999999999986

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.75  E-value=4.7e-18  Score=130.19  Aligned_cols=119  Identities=13%  Similarity=0.162  Sum_probs=86.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc-----
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-----   84 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~-----   84 (221)
                      .++.++|+++|.+|+|||||+|+|+..... ......+++.......+...+..+.+|||||+..+......+++     
T Consensus        33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~  111 (262)
T 3def_A           33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGF  111 (262)
T ss_dssp             TCCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence            467899999999999999999998765542 23344555555555555445679999999999887665555443     


Q ss_pred             ----CccEEEEEEeCCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCCC
Q 027593           85 ----HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (221)
Q Consensus        85 ----~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~i~v~nk~D~~  130 (221)
                          .++++++|++++... +... ..|+..+.....   ..|+++|+||+|+.
T Consensus       112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence                789999999987654 4443 366666665533   35999999999985

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.75  E-value=1.4e-17  Score=134.53  Aligned_cols=160  Identities=16%  Similarity=0.136  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCe-EEEEEEEeCCCcccc----ccccccc---ccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~g~~~~----~~~~~~~---~~~   85 (221)
                      ..|+|+|++|||||||+++++....  .......++..+....+... ...+.+||+||....    ......+   +..
T Consensus       158 ~~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er  235 (416)
T 1udx_A          158 ADVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIAR  235 (416)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence            4589999999999999998654322  11222222333332223222 367899999997432    2222222   346


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++.++.++|++ ...+..+..|...+....   ...|.++++||+|+................+..++.+||+++.|+++
T Consensus       236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~e  314 (416)
T 1udx_A          236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPA  314 (416)
T ss_dssp             SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHH
T ss_pred             HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHH
Confidence            89999999998 556666666655554432   36899999999999765222222344445678999999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027593          163 PFLYLARKLAGDPN  176 (221)
Q Consensus       163 ~~~~l~~~l~~~~~  176 (221)
                      ++..|.+.+...+.
T Consensus       315 L~~~i~~~l~~~~~  328 (416)
T 1udx_A          315 LKEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999876554

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.73  E-value=1.3e-18  Score=140.28  Aligned_cols=83  Identities=19%  Similarity=0.132  Sum_probs=46.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEE-----------------------ecC-eEEEEEEEeC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----------------------TNC-GKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~~~~~D~   69 (221)
                      ++|+++|.+|||||||+|+++...  ......+++|.......                       +.+ ..+.+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            589999999999999999977655  22233344443333221                       122 2478999999


Q ss_pred             CCcccc----ccccc---ccccCccEEEEEEeCCCh
Q 027593           70 AGQEKF----GGLRD---GYYIHGQCAIIMFDVTAR   98 (221)
Q Consensus        70 ~g~~~~----~~~~~---~~~~~~~~~i~v~d~~~~   98 (221)
                      ||....    .....   .+++.+|++++|+|+++.
T Consensus        79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            997542    22222   447899999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.73  E-value=1.5e-17  Score=127.90  Aligned_cols=120  Identities=14%  Similarity=0.142  Sum_probs=85.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc-------
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-------   82 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-------   82 (221)
                      ..+.++|+++|.+|+|||||+|+|+...+ .......+++.......+...+..+.+|||||...+......+       
T Consensus        36 ~~~~~~I~vvG~~g~GKSSLin~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~  114 (270)
T 1h65_A           36 DVNSLTILVMGKGGVGKSSTVNSIIGERV-VSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  114 (270)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHH
Confidence            35689999999999999999999776554 2234455566665555555566889999999987665433211       


Q ss_pred             --ccCccEEEEEEeCCChhhhccH-HHHHHHHHhhcCC---CCEEEEEeCCCCCc
Q 027593           83 --YIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN  131 (221)
Q Consensus        83 --~~~~~~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~i~v~nk~D~~~  131 (221)
                        ...+|++++|+|++.. ++... ..|+..+......   .|+++|+||+|+..
T Consensus       115 ~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          115 LLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence              2368999999998653 45443 3666666554332   69999999999864

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.73  E-value=6.5e-18  Score=131.67  Aligned_cols=162  Identities=17%  Similarity=0.238  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC-CCCCcccC------CceeEeeeEEEEe--cCeEEEEEEEeCCCc-------ccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKYEP------TIGVEVHPLDFFT--NCGKIRFYCWDTAGQ-------EKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~~D~~g~-------~~~   75 (221)
                      ..++|+|+|++|||||||++++.+. .+.....+      +.+.........+  .+....+.+||++|.       +.+
T Consensus        17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~   96 (301)
T 2qnr_A           17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF   96 (301)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred             CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence            4689999999999999999995543 33222100      0111111122222  334578999999997       434


Q ss_pred             ccccc-------ccccC-------------ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-c
Q 027593           76 GGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V  134 (221)
Q Consensus        76 ~~~~~-------~~~~~-------------~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~  134 (221)
                      .....       .++..             +.+++++.+.+ ..++..+..  ..+.......|+++|+||+|+.... .
T Consensus        97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt-~~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSS-SSSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCc-ccCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHHH
Confidence            33332       23222             22344443322 224444431  3333334567999999999987532 1


Q ss_pred             c---HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCCCCC
Q 027593          135 K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL  177 (221)
Q Consensus       135 ~---~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~  177 (221)
                      .   .+..+++...+++++++|++++ +++++|..+++.+....++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~  218 (301)
T 2qnr_A          174 ERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPF  218 (301)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCc
Confidence            1   2334567778899999999999 9999999999998765443

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.72  E-value=5e-17  Score=139.58  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=85.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CCCCCc--------cc------CCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~~--------~~------~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ..+..+|+|+|++|+|||||+++|+.  +.....        ..      ...+++.......+...+..+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            45678999999999999999999874  322110        00      023444444444444456889999999999


Q ss_pred             cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        74 ~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      .+...+..+++.+|++++|+|+++...+.....|... ..  .+.|+++|+||+|+..
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~-~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQA-TT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHH-HH--TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHH-HH--cCCCEEEEEECCCccc
Confidence            9888888889999999999999988777666666542 22  2799999999999864

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.71  E-value=1.5e-16  Score=136.82  Aligned_cols=119  Identities=18%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC--CCCCc--c------------cCCceeEeeeEEEEecCe-------EEEEEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--Y------------EPTIGVEVHPLDFFTNCG-------KIRFYC   66 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~--~~~~~--~------------~~~~~~~~~~~~~~~~~~-------~~~~~~   66 (221)
                      ..+..+|+|+|+.|+|||||+++|+..  .+...  .            ....+.+.......+...       ...+.+
T Consensus         7 ~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~l   86 (704)
T 2rdo_7            7 IARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINI   86 (704)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEE
Confidence            345689999999999999999998642  21110  0            002334444333333322       389999


Q ss_pred             EeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      |||||+.+|...+..+++.+|++++|+|+++.........|.....   .+.|+++++||+|+..
T Consensus        87 iDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           87 IDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             EeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHH---cCCCEEEEEeCCCccc
Confidence            9999999988888888999999999999998766555545543221   3789999999999854

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.69  E-value=2.2e-16  Score=135.62  Aligned_cols=109  Identities=13%  Similarity=0.139  Sum_probs=76.6

Q ss_pred             EEEEEeCCCcccc---cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccH--
Q 027593           63 RFYCWDTAGQEKF---GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA--  136 (221)
Q Consensus        63 ~~~~~D~~g~~~~---~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~--  136 (221)
                      .+.+|||||....   ......++..+|++++|+|+++..+......|...+..  .+.|+++|+||+|+.... ...  
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence            5899999996542   33445678899999999999988777666556544432  267899999999986432 000  


Q ss_pred             --H------HH-----H-HHHh--------cCceEEEeecC--------------CCCChHHHHHHHHHHHhC
Q 027593          137 --K------QV-----T-FHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       137 --~------~~-----~-~~~~--------~~~~~~~~s~~--------------~~~~i~~~~~~l~~~l~~  173 (221)
                        +      ..     . +...        ...+++++|++              ++.|+.+++..|.+.+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence              0      01     0 1111        12468999999              999999999999887754

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=2.1e-16  Score=132.24  Aligned_cols=116  Identities=17%  Similarity=0.147  Sum_probs=88.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC------------------CC--CcccCCceeEeeeEEEEecCeEEEEEEEeCCCc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGE------------------FE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~   72 (221)
                      .-+|+|+|+.++|||||..+|+...                  ..  .......|+|......++.+++..++++||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            4689999999999999999986311                  00  112334567777777777778899999999999


Q ss_pred             ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        73 ~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      .+|.......++-+|++++|+|+...--......|......   ++|.++++||+|...
T Consensus       111 vDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          111 QDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchh
Confidence            99999999999999999999999988665656666555443   899999999999754

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.69  E-value=3.8e-16  Score=122.59  Aligned_cols=113  Identities=10%  Similarity=0.078  Sum_probs=70.7

Q ss_pred             EEEEEEeCCCccc-------------ccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027593           62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        62 ~~~~~~D~~g~~~-------------~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~  127 (221)
                      ..+.+|||||...             +......++..+|++++|+|..+.. .......+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            5799999999753             2334455678999999999974432 21222233333322  378999999999


Q ss_pred             CCCcccc-cHHHHHH-HHhcCceEEEeecC---C---CCChHHHHHHHHHHHhCCCC
Q 027593          128 DVKNRQV-KAKQVTF-HRKKNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       128 D~~~~~~-~~~~~~~-~~~~~~~~~~~s~~---~---~~~i~~~~~~l~~~l~~~~~  176 (221)
                      |+..... ..+.... ....+..++++++.   .   +.|+.+++..+...+...+.
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            9875432 1222210 01122456665554   4   68889999999998876654

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=127.75  Aligned_cols=157  Identities=15%  Similarity=0.204  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------cCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------   77 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------   77 (221)
                      -.++|+|+|++|||||||++.|++..+....        .++.+...........+....+.+||++|...+..      
T Consensus        30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~  109 (418)
T 2qag_C           30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQ  109 (418)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CH
T ss_pred             CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHH
Confidence            4689999999999999999997655442111        11111111111111122335789999999764311      


Q ss_pred             -------------------cccccccCccEEEEEEeCCCh-hhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-cc
Q 027593           78 -------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VK  135 (221)
Q Consensus        78 -------------------~~~~~~~~~~~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~  135 (221)
                                         ....++..+++.+++|..... .++.... .|+..+.   .+.|+|+|+||+|+.... ..
T Consensus       110 ~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev~  186 (418)
T 2qag_C          110 PVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEECQ  186 (418)
T ss_dssp             HHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHHH
Confidence                               123345566655555554433 4555554 4555553   378999999999986532 22


Q ss_pred             ---HHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          136 ---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       136 ---~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                         ......+...+++++++|++++.++.++|..+...+
T Consensus       187 ~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~i  225 (418)
T 2qag_C          187 QFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  225 (418)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCC-----------------C
T ss_pred             HHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhC
Confidence               123355667789999999999999998877776643

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.64  E-value=1.2e-16  Score=127.77  Aligned_cols=153  Identities=12%  Similarity=0.124  Sum_probs=96.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCc---------------------------------------------
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI---------------------------------------------   46 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~---------------------------------------------   46 (221)
                      .-.+|+|+|++|||||||+|+|++..+.+......                                             
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            34599999999999999999988765533221111                                             


Q ss_pred             -------eeEeeeEEEEec-CeEEEEEEEeCCCcccc-------------cccccccccCccEEEEEEeCCChhhhccHH
Q 027593           47 -------GVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVP  105 (221)
Q Consensus        47 -------~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~-------------~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~  105 (221)
                             +.+.......+. .....+.+|||||...+             ......++..++++++|++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                   000011111111 12346899999998765             344566788999999999876543332  2


Q ss_pred             HHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccHHHH-HHHHhcCceEEEeecCCCCChHHHHHH
Q 027593          106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus       106 ~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      .|...+.... .+.|+++|+||+|+.... ...+.. ......+.+|+.+++.++.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            3333333332 367999999999986532 222222 234456788999999998887665443

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.64  E-value=1.5e-16  Score=126.86  Aligned_cols=157  Identities=11%  Similarity=0.115  Sum_probs=92.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc----cCCcee----------------------Ee--------------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGV----------------------EV--------------   50 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~----~~~~~~----------------------~~--------------   50 (221)
                      ...++|+|+|.+|||||||+|+|++..+.+..    ...++.                      +.              
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            45679999999999999999997766653221    111221                      00              


Q ss_pred             ---------eeEEEEecC-eEEEEEEEeCCCccc-------------ccccccccccCcc-EEEEEEeCCChhhhccHHH
Q 027593           51 ---------HPLDFFTNC-GKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVPT  106 (221)
Q Consensus        51 ---------~~~~~~~~~-~~~~~~~~D~~g~~~-------------~~~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~  106 (221)
                               ....+.+.+ ....+.+|||||...             +......|+...+ ++++|.+++....-.....
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~  188 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  188 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHH
Confidence                     001111111 135799999999643             2233445565555 5555666654322222222


Q ss_pred             HHHHHHhhcCCCCEEEEEeCCCCCcccc-cHHHHH---HHHhcC-ceEEEeecCCCCChHHHHHHHHH
Q 027593          107 WHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       107 ~~~~~~~~~~~~p~i~v~nk~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      +...+..  .+.|+++|+||+|+.+... ..+...   .....+ .+++++|++++.|+++++..+..
T Consensus       189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          189 VAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3333322  3789999999999975432 122111   111123 35788999999999999988876

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.63  E-value=2.1e-16  Score=123.17  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=104.1

Q ss_pred             HHHHHHhcCCCC-CcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChh-hhccHH
Q 027593           28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP  105 (221)
Q Consensus        28 tli~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~  105 (221)
                      +|+.+++.+.|. ..+.+|.|..+. ..  +.... .+.+||+  +++++.++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            678888888887 778889994443 33  22222 7899999  8899999999999999999999999987 678888


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcC--ceEEEeecCCCCChHHHHHHHH
Q 027593          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      .|+..+..  .+.|+++|+||+|+.+.....+..+++....  ++++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887654  4899999999999975322222334444455  8999999999999999987654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.62  E-value=4e-16  Score=124.40  Aligned_cols=103  Identities=8%  Similarity=-0.029  Sum_probs=70.1

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH-H
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-V  139 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~-~  139 (221)
                      +..+.+|||||...   ........+|.+++|+|.........+...       ....|.++|+||+|+......... .
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            46899999999432   223345789999999998766544333211       114689999999998653221111 1


Q ss_pred             HHHH----------hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      .+..          ..+.+++.+||++|.|+++++.+|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1111          114789999999999999999999987754

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.59  E-value=1e-15  Score=133.92  Aligned_cols=117  Identities=16%  Similarity=0.197  Sum_probs=85.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC--CC------cc------cCCceeEeeeEEEE----------------ecCe
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------KY------EPTIGVEVHPLDFF----------------TNCG   60 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~--~~------~~------~~~~~~~~~~~~~~----------------~~~~   60 (221)
                      ....+|+|+|+.|+|||||+++|+....  ..      .+      ....|.|.......                .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            4568999999999999999999875311  00      00      01122222222111                1334


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ++.+.+|||||+.+|...+..+++.+|++++|+|+++..++.....|.....   .+.|+++++||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence            7899999999999999988999999999999999999988877766655433   378999999999986

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.58  E-value=4.3e-15  Score=110.68  Aligned_cols=152  Identities=14%  Similarity=0.111  Sum_probs=90.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEee--------eEEEEec------------------CeE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVH--------PLDFFTN------------------CGK   61 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~--------~~~~~~~------------------~~~   61 (221)
                      +..+|+++|.+|||||||+++|+.......    .....+.+..        .....++                  ...
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999775421110    0001110000        0001111                  123


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccH-HHH
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQV  139 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~-~~~  139 (221)
                      ..+.+|||+|+.....   .+....+.+++|+|+.....  ....+....     ..|.++++||+|+.... ... +..
T Consensus       109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEIF-----RVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHHH-----HTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhhh-----hcCCEEEEecccCCcchhhHHHHHH
Confidence            5788999998521111   11124678899999876532  111111111     57899999999986431 122 222


Q ss_pred             HHHHh--cCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 ~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      .....  ...+++++|+++|.|+++++.+|.+.+..
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            33333  25789999999999999999999987643

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.57  E-value=3e-14  Score=112.86  Aligned_cols=82  Identities=18%  Similarity=0.047  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE--EEEecCe---------------EEEEEEEeCCCccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG   76 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~~~~D~~g~~~~~   76 (221)
                      ++|+++|.+|||||||+|+++.....  ....+++|..+.  .+.+.+.               ...+.+|||||+..+.
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            68999999999999999998875531  122222222222  2222221               2579999999987653


Q ss_pred             ----ccccc---cccCccEEEEEEeCCC
Q 027593           77 ----GLRDG---YYIHGQCAIIMFDVTA   97 (221)
Q Consensus        77 ----~~~~~---~~~~~~~~i~v~d~~~   97 (221)
                          .+...   +++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                23222   4789999999999986

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.57  E-value=1.8e-15  Score=120.19  Aligned_cols=102  Identities=9%  Similarity=-0.021  Sum_probs=62.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH-HHH
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV  139 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~-~~~  139 (221)
                      +..+.++||+|....   ...+...+|.+++|+|++.......+..   .+    -..|.++|+||+|+....... ...
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~  235 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA  235 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence            457899999995421   2334678999999999987533221111   11    146889999999986421111 111


Q ss_pred             HHHH----------hcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      .+..          ....+++.+|++++.|+++++.+|.+.+.
T Consensus       236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            1111          12357899999999999999999988763

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.55  E-value=6.4e-15  Score=123.36  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=77.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEec-------Ce----------------E-----
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTN-------CG----------------K-----   61 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-------~~----------------~-----   61 (221)
                      ...++|+|+|.+|+|||||+|+|++..+.. .....++++... .+...       +.                +     
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            356899999999999999999988766531 112222211110 00000       00                0     


Q ss_pred             ------------EEEEEEeCCCccc-----------ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC
Q 027593           62 ------------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI  118 (221)
Q Consensus        62 ------------~~~~~~D~~g~~~-----------~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  118 (221)
                                  ..+.+|||||...           +......++..+|++++|+|+++.........|+..+...  ..
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~  219 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--ED  219 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CC
Confidence                        2589999999764           2233445678899999999998755555555565554432  57


Q ss_pred             CEEEEEeCCCCCcc
Q 027593          119 PIVLCGNKVDVKNR  132 (221)
Q Consensus       119 p~i~v~nk~D~~~~  132 (221)
                      |+++|+||+|+...
T Consensus       220 pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          220 KIRVVLNKADMVET  233 (550)
T ss_dssp             GEEEEEECGGGSCH
T ss_pred             CEEEEEECCCccCH
Confidence            89999999998753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.55  E-value=1.1e-15  Score=130.12  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=89.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CCCCC------c--------ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT--GEFEK------K--------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~--~~~~~------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      -+|+|+|+.++|||||..+|+.  |....      .        .....|+|......++.+.+..++++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            4799999999999999999763  21111      0        011236677777777778889999999999999999


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      .....++-+|++++|+|+...--......|......   +.|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccccc
Confidence            999999999999999999987555555566555444   789999999999754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.54  E-value=4.1e-14  Score=105.71  Aligned_cols=152  Identities=14%  Similarity=0.139  Sum_probs=85.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEee------------eEEEEec-Ce-----------------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG-----------------   60 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~-----------------   60 (221)
                      .+.++|+|+|.+|||||||+++|+.+.+......+.+.+..            .....++ +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999998866544322233332221            1112221 11                 


Q ss_pred             --EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHH
Q 027593           61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAK  137 (221)
Q Consensus        61 --~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~  137 (221)
                        ...+.++|++|.....   ..+-...+..+.+.++........  .....+     ..|.++|+||+|+.... ...+
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence              1145555655521110   011112234455666432211110  011111     57889999999986532 2222


Q ss_pred             -HHHHHHh--cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          138 -QVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       138 -~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                       .......  .+.+++++|+++|.|++++|..|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence             2233333  3679999999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.53  E-value=6.1e-15  Score=116.89  Aligned_cols=102  Identities=12%  Similarity=-0.005  Sum_probs=65.2

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-  139 (221)
                      +..+.+|||||......   .....+|++++|+|++....+..+...   .    .+.|.++|+||+|+.......... 
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~---~----~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKG---L----MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHH---H----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHh---h----hcccCEEEEECCCCCChHHHHHHHH
Confidence            46799999999654332   246789999999999765443332221   1    146789999999997532111111 


Q ss_pred             HHH---Hh-------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          140 TFH---RK-------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       140 ~~~---~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      .+.   ..       ...+++++|+++|.|+++++..|...+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111   11       1357899999999999999999988664

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.51  E-value=1.5e-13  Score=118.55  Aligned_cols=116  Identities=20%  Similarity=0.187  Sum_probs=83.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC--------CCC--------cccCCceeEeeeEEEEec-------CeEEEEEEEeC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGE--------FEK--------KYEPTIGVEVHPLDFFTN-------CGKIRFYCWDT   69 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~--------~~~--------~~~~~~~~~~~~~~~~~~-------~~~~~~~~~D~   69 (221)
                      .-+|+|+|+.++|||||..+|+...        ...        ......|+|.....+++.       ++++.++++||
T Consensus        13 IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDT   92 (709)
T 4fn5_A           13 YRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDT   92 (709)
T ss_dssp             EEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeC
Confidence            3479999999999999999977311        100        112234556655555442       23689999999


Q ss_pred             CCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc
Q 027593           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        70 ~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~  131 (221)
                      ||+.+|.......++-+|++++|+|+...--......|......   +.|.++++||+|...
T Consensus        93 PGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           93 PGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence            99999999999999999999999999987665555667666555   899999999999743

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.47  E-value=3.9e-13  Score=107.01  Aligned_cols=82  Identities=13%  Similarity=-0.069  Sum_probs=52.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEE--EecC-------------------eEEEEEEEeCCCc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--FTNC-------------------GKIRFYCWDTAGQ   72 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-------------------~~~~~~~~D~~g~   72 (221)
                      ++|+++|.+|||||||+|+++....  .....+++|..+...  .+.+                   ....+.+|||||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            6899999999999999999775431  111112222222111  1111                   2357999999998


Q ss_pred             ccccc----ccc---ccccCccEEEEEEeCCC
Q 027593           73 EKFGG----LRD---GYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        73 ~~~~~----~~~---~~~~~~~~~i~v~d~~~   97 (221)
                      .....    ...   ..++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            76532    222   23689999999999985

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.46  E-value=2e-13  Score=104.28  Aligned_cols=113  Identities=13%  Similarity=-0.020  Sum_probs=68.6

Q ss_pred             EEEEEEeCCCccccccccc------ccccCccEEEEEEeCCChhhhccHHHHHHHH-H-hhcCCCCEEEEEeCCCCCccc
Q 027593           62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~------~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      ..+.+|||||+........      ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            5799999999875433221      13455 7888888875433322221111111 1 111378999999999986532


Q ss_pred             ccHHHHH----------H------------------HHhc--CceEEEeecCCCCChHHHHHHHHHHHhCCC
Q 027593          134 VKAKQVT----------F------------------HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       134 ~~~~~~~----------~------------------~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      ...+..+          .                  ....  ..+++++|++++.|+++++.+|.+.+...+
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence            1110000          0                  1222  347999999999999999999998876443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.45  E-value=1.8e-13  Score=117.34  Aligned_cols=165  Identities=13%  Similarity=0.153  Sum_probs=99.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccC--C-------------------------------------------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T-------------------------------------------   45 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~--~-------------------------------------------   45 (221)
                      ..-.+|+|+|.+++|||||+|++++..+.+....  |                                           
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            4567999999999999999999876554221100  0                                           


Q ss_pred             ----ceeEeeeEEEEecC-eEEEEEEEeCCCccccc-------------ccccccc-cCccEEEEEEeCCChhhhccHHH
Q 027593           46 ----IGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFG-------------GLRDGYY-IHGQCAIIMFDVTARLTYKNVPT  106 (221)
Q Consensus        46 ----~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~-------------~~~~~~~-~~~~~~i~v~d~~~~~s~~~~~~  106 (221)
                          .+++.......+.+ ....+.++||||.....             .....|+ ..+|++++|+|++..........
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~  208 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK  208 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHH
Confidence                01111111222111 12357899999965411             1222233 57799999999987644443323


Q ss_pred             HHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHh----cC-ceEEEeecCCCCChHHHHHHHHHH---HhCCCCC
Q 027593          107 WHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPNL  177 (221)
Q Consensus       107 ~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~i~~~~~~l~~~---l~~~~~~  177 (221)
                      +...+..  .+.|+++|+||+|+...............    .+ .+++.+||++|.|+++++..+...   +...|.+
T Consensus       209 ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~y  285 (772)
T 3zvr_A          209 IAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPSY  285 (772)
T ss_dssp             HHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcch
Confidence            4444433  27899999999998754322211111111    12 367889999999999999999874   5455544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.45  E-value=1.3e-13  Score=109.69  Aligned_cols=116  Identities=13%  Similarity=-0.014  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc-------cccccC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~-------~~~~~~   85 (221)
                      ..+|+++|.|+||||||+|+++...  ......+++|..+....+...+.++.++||||........       ...++.
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~  149 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVART  149 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence            3689999999999999999966433  4456678888888887777777899999999975432211       223678


Q ss_pred             ccEEEEEEeCCChhhhc-cHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           86 GQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      +|++++|+|++++.... .+...+..+......+|.++++||.|..
T Consensus       150 ad~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          150 CNLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             CSEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             cCccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            99999999999864321 1112222221223467888999999964

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.30  E-value=1.5e-12  Score=102.83  Aligned_cols=102  Identities=8%  Similarity=-0.018  Sum_probs=61.4

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccH---
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKA---  136 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~---  136 (221)
                      +..+.++||+|.....   ......+|.+++++|+........+....   .    ..+.++++||+|+.. .....   
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h----ccccEEEEEchhccCchhHHHHHH
Confidence            5689999999965321   22356889999999976432211111111   1    235677889999643 22111   


Q ss_pred             HHHHHHH--h------cCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          137 KQVTFHR--K------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 ~~~~~~~--~------~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      .....+.  .      ...+++.+|++++.|+++++..|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            1111111  0      1346888999999999999999988653

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.25  E-value=4.8e-12  Score=101.22  Aligned_cols=88  Identities=17%  Similarity=-0.006  Sum_probs=48.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe--cCe---------------EEEEEEEeCCCccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~~D~~g~~~   74 (221)
                      ..++|+++|.+|||||||+|+++....  .....+++|..+....+  .+.               ...+.+|||||...
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            468999999999999999999775543  23334444444333322  221               23599999999876


Q ss_pred             ccc-------cccccccCccEEEEEEeCCChhhh
Q 027593           75 FGG-------LRDGYYIHGQCAIIMFDVTARLTY  101 (221)
Q Consensus        75 ~~~-------~~~~~~~~~~~~i~v~d~~~~~s~  101 (221)
                      ...       .+..+++.+|++++|+|+.+..++
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            543       234557899999999999876554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.21  E-value=5.7e-11  Score=92.46  Aligned_cols=94  Identities=16%  Similarity=0.088  Sum_probs=75.0

Q ss_pred             cccccccccccccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHHHHHHhcCc
Q 027593           72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL  147 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~~~~~~~~~  147 (221)
                      ++++..+.+.+++++|.+++|+|++++. ++..+..|+..+..  .+.|.++|+||+|+.+...   ..+........+.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            6667778888999999999999999886 88878888886655  4899999999999975431   2233455566688


Q ss_pred             eEEEeecCCCCChHHHHHHH
Q 027593          148 QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus       148 ~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +++++||++|.|+++++..+
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l  163 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYL  163 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHhhc
Confidence            99999999999998887654

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.02  E-value=4e-10  Score=81.71  Aligned_cols=104  Identities=6%  Similarity=-0.058  Sum_probs=67.9

Q ss_pred             CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHH----hh--cCCCCEEEEEeCC-CCCcccccHHHH--
Q 027593           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC----RV--CENIPIVLCGNKV-DVKNRQVKAKQV--  139 (221)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~----~~--~~~~p~i~v~nk~-D~~~~~~~~~~~--  139 (221)
                      .+|+...+..|..|+.++|++|||+|++|...++ .+..+..+.    ..  ..+.|++|++||. |+...-...+..  
T Consensus       109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~  187 (227)
T 3l82_B          109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  187 (227)
T ss_dssp             --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHH
Confidence            3478889999999999999999999999986654 333332222    21  2478999999995 675533222211  


Q ss_pred             -HHH-HhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 -TFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 -~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                       .+. ....+.++.|||.+|+|+.+.++||...+..
T Consensus       188 L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence             111 1245678999999999999999999887643

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.02  E-value=3e-11  Score=96.47  Aligned_cols=135  Identities=11%  Similarity=0.047  Sum_probs=76.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC-----CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccc----c--
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGE-----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD----G--   81 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~----~--   81 (221)
                      ..+|+++|.+|+|||||+|+++...     ........+|+|.....+.+..+   +.++||||.........    .  
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4689999999999999999976542     12234566777777776665543   78999999654332111    1  


Q ss_pred             --c--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEee
Q 027593           82 --Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEIS  153 (221)
Q Consensus        82 --~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s  153 (221)
                        +  ....+.++++++.........+.. +..+..  .+.|+++++||.|........... .+.+..+....+.+
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~~--~~~~~~~v~nk~d~~~~~~~~~~~~~~~~~~g~~l~p~~  310 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVSG--GRRAFTCHFSNRLTIHRTKLEKADELYKNHAGDLLSPPT  310 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEES--SSEEEEEEECTTSCEEEEEHHHHHHHHHHHBTTTBCSSC
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE-EEEecC--CCceEEEEecCccccccccHHHHHHHHHHHhCCccCCCc
Confidence              1  245677888887643211111110 000111  267999999999987654443333 33344454444443

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.01  E-value=7.6e-11  Score=94.24  Aligned_cols=139  Identities=12%  Similarity=0.043  Sum_probs=81.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCC----CCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------c
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------D   80 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~   80 (221)
                      ..+|+++|.+|+|||||+|+++...    ........+|+|.....+.+...   +.++||||........        .
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            4589999999999999999966531    12333455667777666655433   7899999965332111        1


Q ss_pred             ccc--cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhcCceEEEeecCCC
Q 027593           81 GYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~--~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~  157 (221)
                      .++  ...+.++++++......+..+.. +..+.  ..+.|+++++||.|........... .+.+..+....+.++...
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~~  315 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRYA  315 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGGT
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchhh
Confidence            111  56788888888743311111111 00011  1267999999999986644333333 344455555555554443

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.99  E-value=1.6e-10  Score=88.53  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=40.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+.+.+.++++.
T Consensus       146 gGqkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          146 FGQKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     99999999999998875

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.99  E-value=1.1e-09  Score=82.23  Aligned_cols=51  Identities=20%  Similarity=0.237  Sum_probs=43.1

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+..+  |.++....|++++..+|+++++|||+++     +|+.......+.++++..
T Consensus       143 ~~~LS--gGq~QRv~iAral~~~p~llllDEPts~-----LD~~~~~~i~~~l~~l~~  193 (235)
T 3tif_A          143 PNQLS--GGQQQRVAIARALANNPPIILADQPTWA-----LDSKTGEKIMQLLKKLNE  193 (235)
T ss_dssp             GGGSC--HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34444  4456668899999999999999999999     999999999999988754

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.99  E-value=2e-09  Score=85.79  Aligned_cols=46  Identities=17%  Similarity=0.332  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-++....|++++..+|+++++|||+++     +|+..+.++...++++..
T Consensus       136 GGqrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~l~~  181 (381)
T 3rlf_A          136 GGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK  181 (381)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999988754

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.97  E-value=5.2e-10  Score=88.59  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       166 GGqkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~~i~~lL~~l~~  211 (366)
T 3tui_C          166 GGQKQRVAIARALASNPKVLLCDQATSA-----LDPATTRSILELLKDINR  211 (366)
T ss_dssp             HHHHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999998754

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.96  E-value=3.6e-09  Score=83.69  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-++....|++++..+|+++++|||.++     +|+..+++....++++..
T Consensus       148 GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  193 (355)
T 1z47_A          148 GGQQQRVALARALAPRPQVLLFDEPFAA-----IDTQIRRELRTFVRQVHD  193 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988753

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.96  E-value=1.4e-09  Score=82.58  Aligned_cols=47  Identities=21%  Similarity=0.297  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+.......+.++++..+
T Consensus       149 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  195 (256)
T 1vpl_A          149 KGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQE  195 (256)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999887543

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.95  E-value=5.3e-09  Score=77.16  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=40.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.++....|++++..+|+++++|||+++     +|+.......+.++++.
T Consensus       136 gGqkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~  180 (214)
T 1sgw_A          136 QGTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEIL  180 (214)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     99999999999998765

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.94  E-value=4.9e-09  Score=84.62  Aligned_cols=60  Identities=22%  Similarity=0.383  Sum_probs=34.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcc--cCCceeEeeeEEEEecC--eEEEEEEEeCCCcc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQE   73 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~~~~D~~g~~   73 (221)
                      ++++|+|++|+|||||+|.+++-......  ....+.......+....  -...+.++|++|..
T Consensus        43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g  106 (427)
T 2qag_B           43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFG  106 (427)
T ss_dssp             EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhh
Confidence            57999999999999999985543222111  11223233333222222  22478899998853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.94  E-value=7.7e-10  Score=84.44  Aligned_cols=46  Identities=33%  Similarity=0.351  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhC------CCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..      +|+++++|||+++     +|+.......+.++++..
T Consensus       144 gGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~~i~~~l~~l~~  195 (266)
T 4g1u_C          144 GGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQHTLRLLRQLTR  195 (266)
T ss_dssp             HHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHHH
Confidence            445666889999998      9999999999999     999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.93  E-value=9.6e-10  Score=83.71  Aligned_cols=47  Identities=19%  Similarity=0.252  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       162 gGqkQRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~  208 (263)
T 2olj_A          162 GGQAQRVAIARALAMEPKIMLFDEPTSA-----LDPEMVGEVLSVMKQLANE  208 (263)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence            4456668899999999999999999999     9999999999999887554

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.93  E-value=2.4e-09  Score=79.74  Aligned_cols=47  Identities=23%  Similarity=0.270  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       143 gGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~l~~~  189 (224)
T 2pcj_A          143 GGEQQRVAIARALANEPILLFADEPTGN-----LDSANTKRVMDIFLKINEG  189 (224)
T ss_dssp             HHHHHHHHHHHHTTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHC
Confidence            4455668899999999999999999999     9999999999999887544

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.92  E-value=9.6e-10  Score=88.10  Aligned_cols=85  Identities=15%  Similarity=0.042  Sum_probs=55.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEE--EEecCe---------------EEEEEEEeCCCccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~~~~~D~~g~~~   74 (221)
                      ...+|+++|++|||||||+|++++... ......++++..+..  +.+.+.               ...+.+||+||...
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            367999999999999999999776432 123333444444333  233321               14689999999654


Q ss_pred             ccc-------cccccccCccEEEEEEeCCC
Q 027593           75 FGG-------LRDGYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        75 ~~~-------~~~~~~~~~~~~i~v~d~~~   97 (221)
                      ...       .....++.+|+++.|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            322       22333678999999999864

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.92  E-value=6.8e-09  Score=82.13  Aligned_cols=44  Identities=32%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      |.++....|++++..+|+++++|||+++     +|+..+.+....+.++
T Consensus       141 GGq~QRValArAL~~~P~lLLLDEPts~-----LD~~~r~~l~~~l~~~  184 (359)
T 3fvq_A          141 GGQQQRAALARALAPDPELILLDEPFSA-----LDEQLRRQIREDMIAA  184 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     9999999998877665

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.92  E-value=5.9e-09  Score=82.76  Aligned_cols=51  Identities=20%  Similarity=0.227  Sum_probs=43.0

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++  |.++....|++++..+|+++++|||.++     +|+..+.+....++++..
T Consensus       131 ~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  181 (362)
T 2it1_A          131 PWQLS--GGQQQRVAIARALVKEPEVLLLDEPLSN-----LDALLRLEVRAELKRLQK  181 (362)
T ss_dssp             GGGSC--HHHHHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence            34444  4456668899999999999999999999     999999999999988743

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.91  E-value=1.3e-08  Score=77.44  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..+.
T Consensus       156 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g  203 (262)
T 1b0u_A          156 GGQQQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG  203 (262)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence            4456668899999999999999999999     99999999999998876543

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.91  E-value=4.5e-09  Score=79.89  Aligned_cols=47  Identities=9%  Similarity=0.179  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       156 gGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  202 (257)
T 1g6h_A          156 GGQMKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAK  202 (257)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHC
Confidence            4456668899999999999999999999     9999999999999987554

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.90  E-value=2.8e-09  Score=81.85  Aligned_cols=46  Identities=26%  Similarity=0.416  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       164 gGqkqRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~  209 (279)
T 2ihy_A          164 TGEKQRVMIARALMGQPQVLILDEPAAG-----LDFIARESLLSILDSLSD  209 (279)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.89  E-value=9.4e-10  Score=82.70  Aligned_cols=46  Identities=28%  Similarity=0.319  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       129 gGqkqRv~lAral~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~  174 (240)
T 2onk_A          129 GGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             HHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455668899999999999999999999     999999999999988743

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.89  E-value=6.9e-09  Score=78.03  Aligned_cols=47  Identities=17%  Similarity=0.272  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       142 gGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~  188 (240)
T 1ji0_A          142 GGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQE  188 (240)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            4455668899999999999999999999     9999999999999887543

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.88  E-value=2e-08  Score=80.03  Aligned_cols=51  Identities=18%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++  |.++....|++++..+|+++++|||.++     +|+..+......++++..
T Consensus       137 ~~~LS--GGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  187 (372)
T 1g29_1          137 PRELS--GGQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQR  187 (372)
T ss_dssp             GGGSC--HHHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             cccCC--HHHHHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            34444  4456668899999999999999999999     999999999999988753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.87  E-value=8e-09  Score=79.01  Aligned_cols=23  Identities=35%  Similarity=0.759  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .++++|+|++|+|||||+|.+++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            48999999999999999998554

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.87  E-value=2.1e-09  Score=84.90  Aligned_cols=46  Identities=24%  Similarity=0.337  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||.++     +|+..++.....++++..
T Consensus       130 gGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~~~l~~~l~~l~~  175 (348)
T 3d31_A          130 GGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHK  175 (348)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.86  E-value=1.1e-08  Score=81.13  Aligned_cols=46  Identities=20%  Similarity=0.258  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||.++     +|+..++.....++++..
T Consensus       136 gGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  181 (359)
T 2yyz_A          136 GGQQQRVALARALVKQPKVLLFDEPLSN-----LDANLRMIMRAEIKHLQQ  181 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4556668899999999999999999999     999999999999988743

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.86  E-value=1.9e-08  Score=80.13  Aligned_cols=51  Identities=16%  Similarity=0.210  Sum_probs=43.2

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++|...+  ...|++++..+|+++++|||.++     +|+..+.+....++++..
T Consensus       139 ~~~LSGGq~Q--RvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  189 (372)
T 1v43_A          139 PAQLSGGQRQ--RVAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQ  189 (372)
T ss_dssp             TTTCCSSCHH--HHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            4556655544  48899999999999999999999     999999999999988754

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.85  E-value=1.1e-08  Score=81.12  Aligned_cols=46  Identities=24%  Similarity=0.338  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||.++     +|+..+.+..+.++++..
T Consensus       143 GGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  188 (353)
T 1oxx_K          143 GAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQS  188 (353)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4456668899999999999999999999     999999999999988743

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.83  E-value=2.1e-08  Score=75.91  Aligned_cols=47  Identities=26%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       131 gGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  177 (253)
T 2nq2_C          131 GGQRQLILIARAIASECKLILLDEPTSA-----LDLANQDIVLSLLIDLAQS  177 (253)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEESSSSTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            4455668899999999999999999999     9999999999999887543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.82  E-value=6.1e-09  Score=79.19  Aligned_cols=104  Identities=6%  Similarity=-0.091  Sum_probs=73.1

Q ss_pred             CCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHH----HHHhh--cCCCCEEEEEeC-CCCCcccccHHHH--
Q 027593           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQV--  139 (221)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~i~v~nk-~D~~~~~~~~~~~--  139 (221)
                      .+||...+..|..|+.++|++|+|+|++|.+.++ .+..+.    .+...  ..+.|++|++|| .|+...-...+..  
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4678889999999999999999999999997765 332222    22221  358899999996 5786543222221  


Q ss_pred             -HHH-HhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 -TFH-RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 -~~~-~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                       .+. ......++.|||.+|+|+.+.++||...+..
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence             111 1245678999999999999999999998754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.82  E-value=1.9e-09  Score=81.62  Aligned_cols=47  Identities=15%  Similarity=0.118  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       146 gGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  192 (250)
T 2d2e_A          146 GGEKKRNEILQLLVLEPTYAVLDETDSG-----LDIDALKVVARGVNAMRGP  192 (250)
T ss_dssp             --HHHHHHHHHHHHHCCSEEEEECGGGT-----TCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhc
Confidence            4455567899999999999999999999     9999999999999988544

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.81  E-value=1.2e-08  Score=77.71  Aligned_cols=45  Identities=13%  Similarity=0.131  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +-++....|++++..+|+++++|||+++     +|+...+...+.++++.
T Consensus       131 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~~~  175 (263)
T 2pjz_A          131 AGQSVLVRTSLALASQPEIVGLDEPFEN-----VDAARRHVISRYIKEYG  175 (263)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHHHHHHHHHHhc
Confidence            4456668899999999999999999999     99999999999998764

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.81  E-value=2.5e-08  Score=80.49  Aligned_cols=158  Identities=16%  Similarity=0.193  Sum_probs=82.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCc-e--eEeeeEEEEecCeEEEEEEEeCCCccccccccccc-----c
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y   83 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~-~--~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~-----~   83 (221)
                      ...++|+|++|||||||+|.+.+ ...+ ...-.. +  ++....... ......+.+||++|..........+     +
T Consensus        69 ~~~valvG~nGaGKSTLln~L~G-l~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG-IGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT-CCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC-CCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            35899999999999999998554 3221 111111 1  111111111 1111257899999864322212222     2


Q ss_pred             cCccEEEEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCC---------cccccH---HHH-HHH----Hhc
Q 027593           84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKA---KQV-TFH----RKK  145 (221)
Q Consensus        84 ~~~~~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~---------~~~~~~---~~~-~~~----~~~  145 (221)
                      ...+..++ ++...   +...+ .+...+..  .+.|+++|.||.|+.         +.....   +.+ ...    ...
T Consensus       147 ~~~~~~~~-lS~G~---~~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          147 YEYDFFII-ISATR---FKKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GGCSEEEE-EESSC---CCHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCeEE-eCCCC---ccHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            23344443 55542   11111 12222222  268999999999862         111111   111 222    122


Q ss_pred             ---CceEEEeec--CCCCChHHHHHHHHHHHhCCCCCc
Q 027593          146 ---NLQYYEISA--KSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       146 ---~~~~~~~s~--~~~~~i~~~~~~l~~~l~~~~~~~  178 (221)
                         ....+.+|+  ..+.|++++.+.+...+...+..+
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence               235788899  556679999999999887766544

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.81  E-value=1.9e-09  Score=83.78  Aligned_cols=46  Identities=22%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+.....|++++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       193 GGqrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~~~i~~~l~~l~~  238 (306)
T 3nh6_A          193 GGEKQRVAIARTILKAPGIILLDEATSA-----LDTSNERAIQASLAKVCA  238 (306)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHcC
Confidence            5567778999999999999999999999     999999999999988754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.80  E-value=2.1e-08  Score=76.50  Aligned_cols=47  Identities=13%  Similarity=0.198  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.++++..+
T Consensus       141 gGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  187 (266)
T 2yz2_A          141 GGEKRRVAIASVIVHEPDILILDEPLVG-----LDREGKTDLLRIVEKWKTL  187 (266)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4455668899999999999999999999     9999999999999887543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.76  E-value=4e-09  Score=87.11  Aligned_cols=152  Identities=13%  Similarity=0.020  Sum_probs=82.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc-----CCCCCccc-----CC-----------ceeEeeeEEEE-------------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEKKYE-----PT-----------IGVEVHPLDFF-------------   56 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~-----~~~~~~~~-----~~-----------~~~~~~~~~~~-------------   56 (221)
                      .+...|+|+|++||||||+++++..     |.......     +.           .++........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999652     22110000     00           00111110000             


Q ss_pred             ecCeEEEEEEEeCCCcccccc-cccc---c--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCC
Q 027593           57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV  129 (221)
Q Consensus        57 ~~~~~~~~~~~D~~g~~~~~~-~~~~---~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-i~v~nk~D~  129 (221)
                      ....+..+.++||||...... ....   +  ...++.+++|+|+.....   .......+..   ..|+ .+|+||+|.
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence            001346899999999753211 1111   1  226799999999987532   1222222322   2564 889999998


Q ss_pred             CcccccHHHHHHHHhcCce------------------EEEeecCCCCC-hHHHHHHHHHH
Q 027593          130 KNRQVKAKQVTFHRKKNLQ------------------YYEISAKSNYN-FEKPFLYLARK  170 (221)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~------------------~~~~s~~~~~~-i~~~~~~l~~~  170 (221)
                      ..+...  ........+.|                  .+.+|+..|.| +..+++.+...
T Consensus       253 ~~~~g~--~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGGG--ALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCTH--HHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchHH--HHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            643211  11222222232                  23467888888 88877777654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.76  E-value=5.7e-09  Score=78.82  Aligned_cols=47  Identities=23%  Similarity=0.193  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCC-------CccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~-------~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.+.....|++++..+|+       ++++|||+++     +|+...+...+.++++..+
T Consensus       129 gGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  182 (249)
T 2qi9_C          129 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALSQQ  182 (249)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHHHHHHHHHHHHhC
Confidence            445566889999999999       9999999999     9999999999999987544

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.75  E-value=8.6e-09  Score=79.32  Aligned_cols=59  Identities=19%  Similarity=0.153  Sum_probs=35.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ...++|+++|.+|+|||||+|+++ +.........+|+|.....+...   ..+.++||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~-~~~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLA-KKNIAKTGDRPGITTSQQWVKVG---KELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHH-TSCCC------------CCEEET---TTEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHh-cCceeecCCCCCeeeeeEEEEeC---CCEEEEECcCcC
Confidence            356899999999999999999965 44444555667777665444332   257899999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.71  E-value=5.8e-09  Score=79.45  Aligned_cols=57  Identities=21%  Similarity=0.148  Sum_probs=35.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      ++++++|.+|+|||||+|++... ......+++|+|.....+...   ..+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~---~~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLE---NGVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECT---TSCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeC---CCEEEEECCCccc
Confidence            69999999999999999996644 333455666766655444332   2578999999764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.69  E-value=4.9e-09  Score=80.21  Aligned_cols=46  Identities=22%  Similarity=0.266  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       159 gGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~  204 (271)
T 2ixe_A          159 GGQRQAVALARALIRKPRLLILDNATSA-----LDAGNQLRVQRLLYESPE  204 (271)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHh
Confidence            4556668899999999999999999999     999999999999988753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.68  E-value=6.6e-08  Score=73.79  Aligned_cols=47  Identities=13%  Similarity=0.106  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+.+.+.++++..+
T Consensus       167 gGq~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~  213 (267)
T 2zu0_C          167 GGEKKRNDILQMAVLEPELCILDESDSG-----LDIDALKVVADGVNSLRDG  213 (267)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence            4556668899999999999999999999     9999999999999887544

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.66  E-value=6.9e-08  Score=72.42  Aligned_cols=42  Identities=17%  Similarity=0.224  Sum_probs=37.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHH
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA  205 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~  205 (221)
                      +.+.....|++++..+|+++++|||+++     +|+.......+.+.
T Consensus       130 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          130 GGQKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVGKHIFENVI  171 (237)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHHHHHHHHHH
Confidence            5556668899999999999999999999     99999999998884

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.65  E-value=9.6e-09  Score=77.57  Aligned_cols=45  Identities=13%  Similarity=0.260  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+.+.+.++++.
T Consensus       148 gGq~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~  192 (247)
T 2ff7_A          148 GGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKIC  192 (247)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHc
Confidence            5566778899999999999999999999     99999999999998874

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.63  E-value=1.5e-08  Score=76.41  Aligned_cols=45  Identities=13%  Similarity=0.265  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.+.....|++++..+|+++++|||+++     +|+...+.+.+.++++.
T Consensus       142 gGq~qrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          142 GGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLM  186 (243)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhc
Confidence            4566678899999999999999999999     99999999999998875

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.61  E-value=6.2e-08  Score=77.35  Aligned_cols=109  Identities=18%  Similarity=0.215  Sum_probs=79.2

Q ss_pred             cccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----H-HHHHHhcC
Q 027593           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----Q-VTFHRKKN  146 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~-~~~~~~~~  146 (221)
                      .+.|......+.+..+++++|+|+++..     ..|...+.....+.|+++|+||+|+.......+    . .......+
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g  130 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG  130 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence            4667788888888999999999999864     345455555556899999999999965443221    1 12345556


Q ss_pred             c---eEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593          147 L---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       147 ~---~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      .   .++.+||++|.|+++++..|.+.. ....+.+.-.|..+
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvG  172 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVG  172 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSS
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCC
Confidence            6   799999999999999999998754 44455555555554

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.61  E-value=3.2e-07  Score=68.41  Aligned_cols=41  Identities=20%  Similarity=0.241  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHH
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      +.++....|++++..+|+++++|||+++     +|+...+...+.+
T Consensus       133 gGqkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l  173 (229)
T 2pze_A          133 GGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC  173 (229)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHHHHHHHH
Confidence            4466678899999999999999999999     9999999888863

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.60  E-value=5.6e-08  Score=81.22  Aligned_cols=46  Identities=11%  Similarity=0.145  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+.....|++++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       141 gGe~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~  186 (538)
T 3ozx_A          141 GGGLQRLLVAASLLREADVYIFDQPSSY-----LDVRERMNMAKAIRELLK  186 (538)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHhC
Confidence            4556668899999999999999999999     999999999999988753

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.58  E-value=8.4e-08  Score=72.93  Aligned_cols=46  Identities=15%  Similarity=0.221  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +.+.....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       158 gGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~l~~  203 (260)
T 2ghi_A          158 GGERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEYLFQKAVEDLRK  203 (260)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHhcC
Confidence            4566668899999999999999999999     999999999999988753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.57  E-value=2.1e-07  Score=78.74  Aligned_cols=46  Identities=17%  Similarity=0.238  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       483 gGq~qr~~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  528 (582)
T 3b5x_A          483 GGQRQRVAIARALLRDAPVLILDEATSA-----LDTESERAIQAALDELQK  528 (582)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence            4566668899999999999999999999     999999999999988753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.57  E-value=1.1e-07  Score=79.45  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=43.1

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +..++  |.++....|++++..+|+++++|||+++     +|+.......+.++++..
T Consensus       383 ~~~LS--GGq~QRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~~l~~l~~  433 (538)
T 3ozx_A          383 VNDLS--GGELQKLYIAATLAKEADLYVLDQPSSY-----LDVEERYIVAKAIKRVTR  433 (538)
T ss_dssp             GGGCC--HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            34455  4455568899999999999999999999     999999999999988753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.54  E-value=2.2e-07  Score=71.47  Aligned_cols=101  Identities=12%  Similarity=0.044  Sum_probs=69.7

Q ss_pred             EeCCCcc-cccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhc
Q 027593           67 WDTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK  145 (221)
Q Consensus        67 ~D~~g~~-~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~  145 (221)
                      ...||+. .........+..+|+++.|+|+.++.+..+.     .+.....++|.++|+||+|+.+.........+....
T Consensus         4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~   78 (282)
T 1puj_A            4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQ   78 (282)
T ss_dssp             -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTT
T ss_pred             cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhc
Confidence            3467754 3344455668899999999999999887641     111222589999999999997643333334455556


Q ss_pred             CceEEEeecCCCCChHHHHHHHHHHHh
Q 027593          146 NLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       146 ~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      +.+++.+|+.++.|+++++..+.+.+.
T Consensus        79 g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           79 GIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             TCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            789999999999999999888776553

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.51  E-value=1.7e-07  Score=79.37  Aligned_cols=50  Identities=10%  Similarity=0.066  Sum_probs=42.2

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      ++.++|  .++....|++++..+|+++++|||+++     +|+.......+.++++.
T Consensus       465 ~~~LSG--GqkQRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~ll~~l~  514 (608)
T 3j16_B          465 VQHLSG--GELQRVAIVLALGIPADIYLIDEPSAY-----LDSEQRIICSKVIRRFI  514 (608)
T ss_dssp             SSSCCH--HHHHHHHHHHHTTSCCSEEEECCTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             hhhCCH--HHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHH
Confidence            444554  445558899999999999999999999     99999999999998864

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.49  E-value=1.9e-07  Score=79.07  Aligned_cols=50  Identities=14%  Similarity=0.190  Sum_probs=42.5

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      ++.++  |.++....|++++..+|+++++|||+++     +|+.......+.++++.
T Consensus       469 ~~~LS--GGe~QRv~iAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~  518 (607)
T 3bk7_A          469 VEDLS--GGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM  518 (607)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHH
Confidence            34444  4455568899999999999999999999     99999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.48  E-value=1.7e-07  Score=79.30  Aligned_cols=48  Identities=6%  Similarity=0.097  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |.+.....|++++..+|+++++|||+++     +|+.......+.++++..+.
T Consensus       224 gGe~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~~~l~~~l~~l~~~g  271 (608)
T 3j16_B          224 GGELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQRLNAAQIIRSLLAPT  271 (608)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHGGGTTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHHHHHHHHHHHHHhCC
Confidence            5566678899999999999999999999     99999999999999886653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.47  E-value=1.8e-07  Score=74.75  Aligned_cols=110  Identities=18%  Similarity=0.182  Sum_probs=78.1

Q ss_pred             CcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH----H-HHHHHhc
Q 027593           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----Q-VTFHRKK  145 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~----~-~~~~~~~  145 (221)
                      .++.|......++..++++++|+|+++..+     .|...+.....+.|+++|+||+|+.......+    . .......
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~  131 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL  131 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence            367788888888889999999999998764     23333344445899999999999976433221    1 1234555


Q ss_pred             Cc---eEEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027593          146 NL---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       146 ~~---~~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      +.   .++.+||++|.|+++++..|.+.+ ....+.+.-.|..+
T Consensus       132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvG  174 (369)
T 3ec1_A          132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVG  174 (369)
T ss_dssp             TCCCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSS
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCc
Confidence            65   789999999999999999998754 44556666666655

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.46  E-value=3.9e-07  Score=73.95  Aligned_cols=90  Identities=14%  Similarity=0.044  Sum_probs=53.0

Q ss_pred             EEEEEEeCCCccccccc-cc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593           62 IRFYCWDTAGQEKFGGL-RD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~-~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~  135 (221)
                      ..+.++||+|....... ..     ......+.+++|+|+.....   .......+...  ..+..+|+||.|...+.  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~~g--  255 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSAKG--  255 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCSSH--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcccc--
Confidence            67899999995432211 00     11235688999999886432   22233333321  34567899999986432  


Q ss_pred             HHHHHHHHhcCceEEEeecCCCCCh
Q 027593          136 AKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      -.........+.|+.+++.  |+++
T Consensus       256 G~~ls~~~~~g~PI~fig~--Ge~v  278 (443)
T 3dm5_A          256 GGALSAVAATGAPIKFIGT--GEKI  278 (443)
T ss_dssp             HHHHHHHHTTCCCEEEEEC--SSST
T ss_pred             cHHHHHHHHHCCCEEEEEc--CCCh
Confidence            1233444456788877775  5555

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.45  E-value=8.1e-08  Score=81.29  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++.+..|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       482 gGqrQrv~lARal~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  527 (587)
T 3qf4_A          482 GGQKQRLSIARALVKKPKVLILDDCTSS-----VDPITEKRILDGLKRYTK  527 (587)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhCC
Confidence            5567778999999999999999999999     999999999999887643

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.43  E-value=1.4e-06  Score=67.09  Aligned_cols=41  Identities=20%  Similarity=0.241  Sum_probs=36.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHH
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      +.+.....|++++..+|+++++|||+++     +|+.....+.+.+
T Consensus       162 gGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l  202 (290)
T 2bbs_A          162 GGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC  202 (290)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEECCccc-----CCHHHHHHHHHHH
Confidence            4556668899999999999999999999     9999999888753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.42  E-value=3.5e-07  Score=76.56  Aligned_cols=50  Identities=14%  Similarity=0.197  Sum_probs=42.4

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +..++|  .++....|++++..+|+++++|||+.+     +|......+.+.++++.
T Consensus       399 ~~~LSG--Ge~qrv~lAraL~~~p~lLlLDEPt~~-----LD~~~~~~i~~~l~~l~  448 (538)
T 1yqt_A          399 VNELSG--GELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM  448 (538)
T ss_dssp             GGGCCH--HHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             hhhCCH--HHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence            344444  455568899999999999999999999     99999999999998874

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.42  E-value=2e-07  Score=78.05  Aligned_cols=47  Identities=13%  Similarity=0.202  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-++....|++++..+|+++++|||+++     +|+.......+.++++..+
T Consensus       161 gGekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~  207 (538)
T 1yqt_A          161 GGELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQRLNAARAIRRLSEE  207 (538)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            5556668899999999999999999999     9999999999999887543

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.42  E-value=3.5e-07  Score=77.51  Aligned_cols=52  Identities=15%  Similarity=0.190  Sum_probs=43.7

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ++.++  |.+.....|++++..+|+++++|||+++     +|+.......+.++++..+
T Consensus       226 ~~~LS--GGekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~  277 (607)
T 3bk7_A          226 LHQLS--GGELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQRLKVARVIRRLANE  277 (607)
T ss_dssp             GGGCC--HHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHT
T ss_pred             hhhCC--HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            34444  4556668899999999999999999999     9999999999999887543

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.41  E-value=1.9e-07  Score=78.97  Aligned_cols=46  Identities=17%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       483 gGq~qrl~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  528 (582)
T 3b60_A          483 GGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK  528 (582)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHHHHHHHHHHHhC
Confidence            5566678899999999999999999999     999999999999988753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.40  E-value=7.5e-08  Score=77.18  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      |-++....|++++..+|+++++|||.++     +|+..+.++...++++.
T Consensus       158 GGqrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~~~  202 (390)
T 3gd7_A          158 HGHKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTYQIIRRTLKQAF  202 (390)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHh
Confidence            5567778999999999999999999999     99999999999888764

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.40  E-value=3.5e-08  Score=83.43  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       480 gGq~Qrv~lAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  525 (578)
T 4a82_A          480 GGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK  525 (578)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence            5567778999999999999999999999     999999999888887644

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.39  E-value=6e-08  Score=82.31  Aligned_cols=46  Identities=11%  Similarity=0.272  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+...+.++++..
T Consensus       494 gGq~Qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  539 (598)
T 3qf4_B          494 QGQRQLLAITRAFLANPKILILDEATSN-----VDTKTEKSIQAAMWKLME  539 (598)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHcC
Confidence            5567778999999999999999999999     999999999999988753

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.37  E-value=5.1e-07  Score=75.91  Aligned_cols=65  Identities=15%  Similarity=0.041  Sum_probs=40.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCccc-CCceeEeeeEEEE--e-cCeEEEEEEEeCCCccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFF--T-NCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~-~~~~~~~~~~~~~--~-~~~~~~~~~~D~~g~~~   74 (221)
                      ..+.++|+|+|.+|+|||||+|++++....-... .+.+.+.......  + ...+..+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            3467899999999999999999966544211111 1222222222211  1 23446789999999654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.36  E-value=5.2e-07  Score=64.15  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=28.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchH
Q 027593          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA  195 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~  195 (221)
                      .+.++.+..|++++..+|.++++|||..+     +|+.
T Consensus        85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~  117 (171)
T 4gp7_A           85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQER  117 (171)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHH
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHH
Confidence            35567778999999999999999999999     8887

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.32  E-value=3.3e-07  Score=84.21  Aligned_cols=46  Identities=20%  Similarity=0.314  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++.+-.|+|++.++|+++++|||++.     +|.++.+.+.+.++++..
T Consensus      1220 gGQrQriaiARAllr~~~ILiLDEaTSa-----LD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A         1220 GGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHcC
Confidence            4467778999999999999999999999     999999999888887643

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.31  E-value=9.8e-07  Score=75.90  Aligned_cols=53  Identities=15%  Similarity=0.168  Sum_probs=44.0

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCC--CccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~--~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ++.++  |-++....|++++..+|+  ++++|||+++     +|+.....+.+.++++..+.
T Consensus       200 ~~~LS--GGe~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~~l~~~l~~l~~~g  254 (670)
T 3ux8_A          200 AGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDNDRLIATLKSMRDLG  254 (670)
T ss_dssp             GGGSC--HHHHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHHHHHHHHHHHHHTT
T ss_pred             cccCC--HHHHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHcC
Confidence            34444  555666889999999988  9999999999     99999999999999886543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.28  E-value=4.2e-07  Score=83.53  Aligned_cols=46  Identities=22%  Similarity=0.315  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++.+..|+|++..+|+++++|||++.     +|.+..+...+.+.++..
T Consensus       557 GGQkQRiaiARAl~~~~~IliLDE~tSa-----LD~~te~~i~~~l~~~~~  602 (1321)
T 4f4c_A          557 GGQKQRIAIARALVRNPKILLLDEATSA-----LDAESEGIVQQALDKAAK  602 (1321)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHccCCCEEEEeccccc-----CCHHHHHHHHHHHHHHhC
Confidence            5578889999999999999999999999     999988888888877643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.24  E-value=2.2e-06  Score=69.54  Aligned_cols=91  Identities=12%  Similarity=0.040  Sum_probs=54.1

Q ss_pred             EEEEEEEeCCCccc--ccc-cc---ccc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc
Q 027593           61 KIRFYCWDTAGQEK--FGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        61 ~~~~~~~D~~g~~~--~~~-~~---~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~  132 (221)
                      ...+.++||||...  ... ..   ...  ....+.+++|+|+.....   .......+...  ..+..+++||.|...+
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~---a~~~a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK---AYDLASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---GHHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH---HHHHHHHHhcc--cCCcEEEEeccccccc
Confidence            46788999999543  111 11   111  124588999999886532   22333444332  3567899999998643


Q ss_pred             cccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593          133 QVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      .  -.........+.|+.+++.  |+++
T Consensus       254 ~--G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 G--GGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             H--HHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             c--hHHHHHHHHHCCCEEEEEC--CCCh
Confidence            2  2234445556888888775  5554

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.24  E-value=1e-06  Score=71.63  Aligned_cols=86  Identities=16%  Similarity=0.053  Sum_probs=49.4

Q ss_pred             eEEEEEEEeCCCcccccc-cc-----cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCC-C-EEEEEeCCCCCc
Q 027593           60 GKIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKN  131 (221)
Q Consensus        60 ~~~~~~~~D~~g~~~~~~-~~-----~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~i~v~nk~D~~~  131 (221)
                      ....+.++||||...... ..     ...+..++.+++|+|+....   +.......+   .... | ..+|+||+|...
T Consensus       179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~---~~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAKAF---KEAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHHHH---HTTSCSCEEEEEECSSSCS
T ss_pred             hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHHHH---hhcccCCeEEEEeCCCCcc
Confidence            346789999999653211 10     01123679999999987552   222222222   2345 6 789999999854


Q ss_pred             ccccHHHHHHHHhcCceEEEee
Q 027593          132 RQVKAKQVTFHRKKNLQYYEIS  153 (221)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s  153 (221)
                      ..  ..........+.++.+++
T Consensus       253 ~~--g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 KG--GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             TT--HHHHHHHHHSSCCEEEEC
T ss_pred             ch--HHHHHHHHHHCCCEEEee
Confidence            22  223345555666766654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.17  E-value=1.3e-06  Score=80.16  Aligned_cols=46  Identities=20%  Similarity=0.309  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++.+..|++++..+|+++++|||+++     +|....+...+.+++...
T Consensus      1174 gGq~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A         1174 GGQKQRIAIARALVRQPHILLLDEATSA-----LDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp             HHHHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhCC
Confidence            4566778899999999999999999999     999999999999887643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.15  E-value=2.6e-06  Score=65.93  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=53.6

Q ss_pred             EEEEEEEeCCCccc--ccc-ccc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCc
Q 027593           61 KIRFYCWDTAGQEK--FGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN  131 (221)
Q Consensus        61 ~~~~~~~D~~g~~~--~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~  131 (221)
                      ...+.++||||...  ... ...     .....++.+++|+|+...   .+.......+..   ..+ ..+++||+|...
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            45789999999765  211 111     123468899999998643   222222223322   456 678999999754


Q ss_pred             ccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593          132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +.  ..........+.++.+++  .|++++
T Consensus       254 ~~--g~~~~~~~~~~~pi~~i~--~Ge~v~  279 (297)
T 1j8m_F          254 KG--GGALSAVAATGATIKFIG--TGEKID  279 (297)
T ss_dssp             TH--HHHHHHHHTTTCCEEEEE--CSSSTT
T ss_pred             ch--HHHHHHHHHHCcCEEEEe--CCCChh
Confidence            22  223455566678877766  455554

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.15  E-value=5.2e-06  Score=65.07  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             EEEEEEeCCCcccccccc-ccc-----ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccccc
Q 027593           62 IRFYCWDTAGQEKFGGLR-DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~-~~~-----~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~  135 (221)
                      ..+.++|++|........ ...     .-..+-.+++.|+...   .++......+...  .....+++||.|...+  .
T Consensus       212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~--~~it~iilTKlD~~a~--~  284 (328)
T 3e70_C          212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEA--VKIDGIILTKLDADAR--G  284 (328)
T ss_dssp             CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHH--SCCCEEEEECGGGCSC--C
T ss_pred             chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHh--cCCCEEEEeCcCCccc--h
Confidence            345678999964322211 111     1246788889997655   2333333333322  2345788999997432  2


Q ss_pred             HHHHHHHHhcCceEEEeecCCCCCh
Q 027593          136 AKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      -.........+.++.+++  +|+++
T Consensus       285 G~~l~~~~~~~~pi~~i~--~Ge~v  307 (328)
T 3e70_C          285 GAALSISYVIDAPILFVG--VGQGY  307 (328)
T ss_dssp             HHHHHHHHHHTCCEEEEE--CSSST
T ss_pred             hHHHHHHHHHCCCEEEEe--CCCCc
Confidence            334455666678887776  45554

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.12  E-value=3.9e-07  Score=83.48  Aligned_cols=46  Identities=22%  Similarity=0.320  Sum_probs=40.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.++.+..|++++..+|+++++|||+++     +|.+..+...+.++.+..
T Consensus       529 gGq~QriaiARal~~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~~  574 (1284)
T 3g5u_A          529 GGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEAVVQAALDKARE  574 (1284)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHcC
Confidence            5577779999999999999999999999     999998888888876543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.11  E-value=4.8e-06  Score=70.74  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      .|+|+|++|||||||++.+. |..
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~-Gl~   69 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALS-GVA   69 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHH-SCC
T ss_pred             eEEEECCCCChHHHHHHHHh-CCC
Confidence            49999999999999999854 443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.06  E-value=1.2e-05  Score=71.21  Aligned_cols=43  Identities=19%  Similarity=0.129  Sum_probs=39.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHH
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAA  206 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~  206 (221)
                      |.++....|++++..+|+++++|||+++     +|+...+.+.+.+++
T Consensus       551 GGqkQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          551 GGWKMKLALARAVLRNADILLLDEPTNH-----LDTVNVAWLVNYLNT  593 (986)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHh
Confidence            5556668899999999999999999999     999999999999887

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.93  E-value=5.7e-06  Score=62.86  Aligned_cols=93  Identities=13%  Similarity=0.035  Sum_probs=61.5

Q ss_pred             CCCccc-ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCc
Q 027593           69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL  147 (221)
Q Consensus        69 ~~g~~~-~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~  147 (221)
                      .||+.. ........+.++|+++.|+|+.++.+..+...  . +   . ++|.++|+||+|+.+..............+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l--~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~   76 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV--D-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK   76 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS--C-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH--H-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence            355432 22344556889999999999999877754211  1 1   1 7899999999999764333333444555677


Q ss_pred             eEEEeecCCCCChHHHHHHHHH
Q 027593          148 QYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       148 ~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      ++ .+|+.++.|+++++..+..
T Consensus        77 ~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           77 RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             CE-EECCTTSCHHHHHHHHCCC
T ss_pred             eE-EEECCCCcCHHHHHHHHHH
Confidence            77 9999999999887665533

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.91  E-value=3.3e-07  Score=75.53  Aligned_cols=101  Identities=16%  Similarity=-0.020  Sum_probs=53.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccc--ccccc--------c
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLR--------D   80 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~--~~~~~--------~   80 (221)
                      .....|+++|.+||||||+.++|..... ....++.+...........+......+||..|...  ....+        .
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~  115 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVR  115 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHH
Confidence            4468999999999999999998543211 11111111110000000111123345778887632  22222        3


Q ss_pred             ccccCccEEEEEEeCCChhhhccHHHHHHHHHh
Q 027593           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR  113 (221)
Q Consensus        81 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~  113 (221)
                      .++....+.++|+|.++. .+.....|......
T Consensus       116 ~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~  147 (469)
T 1bif_A          116 KFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQ  147 (469)
T ss_dssp             HHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence            445556777889998877 44444555554443

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.90  E-value=0.00027  Score=56.22  Aligned_cols=47  Identities=11%  Similarity=0.222  Sum_probs=39.8

Q ss_pred             ChHHHHHHHHHHHh------CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.+.....|++++.      .+|+++++|||+++     +|+.......+.++++..+
T Consensus       282 gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~~~~~~~l~~l~~~  334 (365)
T 3qf7_A          282 GGERALISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENKEKIASVLKELERL  334 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHHHHHHHHHHGGGGS
T ss_pred             HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhC
Confidence            44555677888887      79999999999999     9999999999999987654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.88  E-value=7e-06  Score=58.65  Aligned_cols=43  Identities=5%  Similarity=0.029  Sum_probs=31.5

Q ss_pred             ChHHHHHHHHHH-----HhCCCCCccccC--CCCCCcccccchHHHHHHHHHHHH
Q 027593          159 NFEKPFLYLARK-----LAGDPNLHFVES--PALAPPEVQIDLAAQQQHEAELAA  206 (221)
Q Consensus       159 ~i~~~~~~l~~~-----l~~~~~~~~~~e--p~~~~~~~~~~~~~~~~~~~~~~~  206 (221)
                      +.+.....|+++     +..+|+++++||  |+.+     +|+...+.+.+.+++
T Consensus        79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~-----ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-----FSKKFRDLVRQIMHD  128 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-----GCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhccccccccCCCEEEEeCCCCccc-----CCHHHHHHHHHHHhc
Confidence            344556677775     788888888899  8888     777777776666654

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.74  E-value=1.4e-05  Score=58.11  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|+|++|||||||++.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~   25 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLF   25 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            368999999999999999854

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.72  E-value=1.4e-05  Score=61.95  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|+|++|||||||+|.+.
T Consensus       173 G~~~~lvG~sG~GKSTLln~L~  194 (307)
T 1t9h_A          173 DKTTVFAGQSGVGKSSLLNAIS  194 (307)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHhc
Confidence            3589999999999999999854

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.70  E-value=1.8e-05  Score=57.81  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =.++|+|++|||||||++.+.
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999844

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.69  E-value=4.2e-05  Score=59.31  Aligned_cols=82  Identities=15%  Similarity=0.117  Sum_probs=54.0

Q ss_pred             ccccccccCccEEEEEEeCCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCCCcccc----cHHHHHHHHhcCceEEE
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~----~~~~~~~~~~~~~~~~~  151 (221)
                      .+.+..+.++|.+++|+|+.++....+ +..++....  ..++|.++|+||+|+.+...    ...........+.+.+.
T Consensus        78 ~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~  155 (307)
T 1t9h_A           78 ELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYL  155 (307)
T ss_dssp             EETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred             hhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEE
Confidence            344456789999999999997654433 223332222  24789999999999976532    22333444456778888


Q ss_pred             eecCCCCCh
Q 027593          152 ISAKSNYNF  160 (221)
Q Consensus       152 ~s~~~~~~i  160 (221)
                      +|+.++.|+
T Consensus       156 ~sa~~~~g~  164 (307)
T 1t9h_A          156 TSSKDQDSL  164 (307)
T ss_dssp             CCHHHHTTC
T ss_pred             EecCCCCCH
Confidence            888877665

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.68  E-value=3.9e-05  Score=60.71  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      -.++|+|++|||||||+|.+++
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            3689999999999999998553

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.66  E-value=3.1e-05  Score=55.31  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .-.++|+|++|||||||++.+..
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34789999999999999998553

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.66  E-value=2.3e-05  Score=56.96  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      --++|+|++|||||||++.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~   28 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALV   28 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHH
Confidence            468999999999999999854

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.64  E-value=2.6e-05  Score=54.54  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =.++++|++|||||||++.+.+
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998553

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.63  E-value=9.2e-06  Score=58.36  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027593           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~   35 (221)
                      |+|+||+|||||||+++++.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999999664

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.63  E-value=2.6e-05  Score=57.55  Aligned_cols=23  Identities=17%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .--++|+|++|||||||++.+.+
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999998543

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.62  E-value=1.5e-05  Score=57.74  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .++.-.|+|+|++|||||||++.++.
T Consensus        16 ~~~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           16 FQGRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECcCCCCHHHHHHHHHh
Confidence            34455789999999999999998653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.62  E-value=5.6e-05  Score=61.53  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=22.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ..+..-|+|+|++++|||||+|++++
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhh
Confidence            55677899999999999999999764

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.61  E-value=2.9e-05  Score=57.31  Aligned_cols=21  Identities=48%  Similarity=0.843  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|+|++|||||||++.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~   44 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLL   44 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999854

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.61  E-value=0.00024  Score=57.78  Aligned_cols=84  Identities=14%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             EEEEEEEeCCCcccccc-ccc-----ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCccc
Q 027593           61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQ  133 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~-~~~-----~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~~  133 (221)
                      ++.+.++||||...... ...     ......+.+++|+|+....   +.......+..   ..+ .-+++||+|.....
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~~~  256 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDARG  256 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSSCC
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCccH
Confidence            46789999999643321 111     1133678899999987542   22222333322   344 34689999986432


Q ss_pred             ccHHHHHHHHhcCceEEEe
Q 027593          134 VKAKQVTFHRKKNLQYYEI  152 (221)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~  152 (221)
                        ..........+.+..++
T Consensus       257 --g~~l~i~~~~~~Pi~~i  273 (433)
T 2xxa_A          257 --GAALSIRHITGKPIKFL  273 (433)
T ss_dssp             --THHHHHHHHHCCCEEEE
T ss_pred             --HHHHHHHHHHCCCeEEE
Confidence              12233444445554443

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.59  E-value=3.9e-05  Score=56.07  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999743

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.59  E-value=4.5e-05  Score=54.75  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|+|+|++|||||||++.+.
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La   30 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALA   30 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999844

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.59  E-value=0.00014  Score=56.27  Aligned_cols=22  Identities=27%  Similarity=0.605  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++++|++|||||||+|.+.
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999999965

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.56  E-value=0.00037  Score=55.12  Aligned_cols=81  Identities=9%  Similarity=0.011  Sum_probs=51.9

Q ss_pred             cccCccEEEEEEeCCChhhhc-cHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc---cHHHHHHHHhcCceEEEeecCCC
Q 027593           82 YYIHGQCAIIMFDVTARLTYK-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~-~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      ...++|.+++|... ++.... .+..++.....  .++|.++|+||+|+.+...   ...........+.+.+.+|+.++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46788999887554 443222 22233322222  2788899999999976432   11233444566889999999999


Q ss_pred             CChHHHHH
Q 027593          158 YNFEKPFL  165 (221)
Q Consensus       158 ~~i~~~~~  165 (221)
                      .|++++..
T Consensus       204 ~gl~~L~~  211 (358)
T 2rcn_A          204 DGLKPLEE  211 (358)
T ss_dssp             BTHHHHHH
T ss_pred             cCHHHHHH
Confidence            99877653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.53  E-value=3.5e-05  Score=56.43  Aligned_cols=35  Identities=11%  Similarity=0.007  Sum_probs=26.6

Q ss_pred             HHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      ...|++++..+|+++++|||+++         ......+.++++
T Consensus       112 rv~lAraL~~~p~lllLDEPts~---------~~~~l~~~l~~l  146 (208)
T 3b85_A          112 PLAYMRGRTLNDAFVILDEAQNT---------TPAQMKMFLTRL  146 (208)
T ss_dssp             EGGGGTTCCBCSEEEEECSGGGC---------CHHHHHHHHTTB
T ss_pred             HHHHHHHHhcCCCEEEEeCCccc---------cHHHHHHHHHHh
Confidence            36789999999999999999988         444455555544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.49  E-value=5.1e-05  Score=54.67  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +++++|++|+|||||++.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~   22 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            58999999999999999844

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.49  E-value=6.2e-05  Score=54.98  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|+|++|||||||++.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~   27 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALA   27 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999743

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.48  E-value=6e-05  Score=55.09  Aligned_cols=23  Identities=26%  Similarity=0.453  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .--|+|+|++|||||||++.+..
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CcEEEEECcCCCCHHHHHHHHHh
Confidence            34689999999999999998553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.44  E-value=7.3e-05  Score=53.64  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .++|+|++|||||||++.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            57999999999999999854

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.42  E-value=8.2e-05  Score=55.80  Aligned_cols=21  Identities=38%  Similarity=0.623  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|+|+|++|||||||++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999844

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.42  E-value=0.00012  Score=57.01  Aligned_cols=25  Identities=20%  Similarity=0.215  Sum_probs=21.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+...|+|+|++|||||||++.+.
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHH
Confidence            4556789999999999999999743

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.41  E-value=8.2e-05  Score=52.46  Aligned_cols=20  Identities=30%  Similarity=0.503  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~   33 (221)
                      ..|+|+|++||||||+.+.+
T Consensus         5 ~~i~l~G~~GsGKSTl~~~L   24 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQL   24 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            36999999999999999974

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.40  E-value=8.3e-05  Score=56.38  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .=.++|+|++|||||||++.+.
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHH
Confidence            3469999999999999999854

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.40  E-value=8.2e-05  Score=57.58  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =.++|+|++|||||||++.+.
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            479999999999999999744

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.40  E-value=0.00011  Score=53.43  Aligned_cols=21  Identities=38%  Similarity=0.601  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|+|+|++||||||+++.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~   27 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIF   27 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999854

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.37  E-value=9.5e-05  Score=53.62  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|+|+|++|||||||++.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999743

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.37  E-value=0.00014  Score=51.42  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|+|+|++||||||+++.+.
T Consensus         7 ~g~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            7 DHHIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34579999999999999999743

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.34  E-value=6.4e-05  Score=55.83  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=14.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|+|++|||||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999855

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.32  E-value=0.0001  Score=54.41  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =-++|+|++|||||||++.+..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.32  E-value=0.00014  Score=54.45  Aligned_cols=24  Identities=21%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        23 ~~g~iigI~G~~GsGKSTl~k~L~   46 (245)
T 2jeo_A           23 MRPFLIGVSGGTASGKSTVCEKIM   46 (245)
T ss_dssp             CCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999754

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.31  E-value=0.00013  Score=53.11  Aligned_cols=22  Identities=41%  Similarity=0.628  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|+|++|||||||++.+.
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~   33 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVL   33 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999854

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.30  E-value=0.00015  Score=51.94  Aligned_cols=22  Identities=27%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|.|++||||||+.+.+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999843

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.28  E-value=0.00016  Score=50.89  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~   33 (221)
                      .-|+|+|++||||||+.+.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999985

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.28  E-value=0.00014  Score=52.74  Aligned_cols=21  Identities=24%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|+|++||||||+.+.+.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~   22 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFR   22 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHH
Confidence            379999999999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.27  E-value=0.00015  Score=53.41  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999743

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.27  E-value=0.00013  Score=51.96  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++++|++|+|||||++.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3568999999999999999854

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.27  E-value=0.00017  Score=52.48  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.|+|+|++||||||+.+.+.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La   23 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFT   23 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.26  E-value=0.0024  Score=49.42  Aligned_cols=22  Identities=41%  Similarity=0.611  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|+++|++|+||||++..+.
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCChHHHHHHHHH
Confidence            4568999999999999999843

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.26  E-value=0.00018  Score=51.60  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|+|.+||||||+.+.+.
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999999753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.26  E-value=0.00013  Score=58.00  Aligned_cols=25  Identities=28%  Similarity=0.585  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      .-+++|+|++|||||||++. +.+.+
T Consensus       170 g~k~~IvG~nGsGKSTLlk~-L~gl~  194 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNK-LAAVF  194 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHH-HHHHT
T ss_pred             hCeEEEECCCCCCHHHHHHH-HHHHh
Confidence            46899999999999999997 44444

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.25  E-value=0.00017  Score=50.69  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|+|++||||||+.+.+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~   22 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLS   22 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999853

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.23  E-value=0.00022  Score=55.21  Aligned_cols=24  Identities=17%  Similarity=0.340  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      -.++++|++|||||||+|. +.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~-l~g~~  193 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNA-INPGL  193 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHH-HSTTC
T ss_pred             CeEEEECCCCCcHHHHHHH-hcccc
Confidence            4689999999999999998 44433

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.22  E-value=9.7e-05  Score=52.29  Aligned_cols=20  Identities=45%  Similarity=0.718  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|+|++|||||||++.+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~   23 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMM   23 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999844

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.22  E-value=0.00025  Score=55.34  Aligned_cols=24  Identities=21%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ....+-|+|+|++|||||||++.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L  112 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVL  112 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHH
Confidence            345678999999999999999974

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.21  E-value=0.00023  Score=50.77  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+++|++||||||+.+.+.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.21  E-value=0.00025  Score=51.37  Aligned_cols=26  Identities=19%  Similarity=0.318  Sum_probs=21.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .......|+|+|++||||||+.+.+.
T Consensus        16 ~~~~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           16 PRGSHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34555789999999999999999753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.21  E-value=0.00021  Score=51.68  Aligned_cols=21  Identities=33%  Similarity=0.490  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|+|+|++||||||+.+.+.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            479999999999999999844

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.21  E-value=0.00025  Score=51.37  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.-.|+|+|++||||||+.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999743

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.20  E-value=0.00025  Score=51.61  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|.|++||||||+.+.+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~   25 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLK   25 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            44689999999999999999843

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.20  E-value=0.00019  Score=50.74  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~   23 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFI   23 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHH
Confidence            468999999999999999855

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.19  E-value=0.00019  Score=51.98  Aligned_cols=21  Identities=24%  Similarity=0.395  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~   39 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIA   39 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.18  E-value=0.00026  Score=50.05  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|.|+|++||||||+.+.+.
T Consensus         4 ~~i~l~G~~GsGKST~a~~La   24 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            469999999999999999844

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.18  E-value=0.00019  Score=56.93  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|+|++|||||||++.++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999855

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.17  E-value=0.0002  Score=55.51  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.--++++|++||||||+++.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34579999999999999999843

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.17  E-value=0.00023  Score=50.48  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .-++|+|++|||||||+++++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999663

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.16  E-value=0.00035  Score=50.67  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999744

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.16  E-value=0.0003  Score=50.23  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|+|++||||||+.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La   31 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIA   31 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999753

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.16  E-value=0.00026  Score=54.96  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~  101 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999744

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.15  E-value=0.00021  Score=55.43  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|+++|++|||||||++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            4579999999999999999844

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.15  E-value=0.00024  Score=51.99  Aligned_cols=20  Identities=30%  Similarity=0.528  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999853

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.15  E-value=0.00027  Score=53.23  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999743

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.13  E-value=0.00026  Score=51.83  Aligned_cols=20  Identities=40%  Similarity=0.528  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+|+|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999853

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.12  E-value=0.00029  Score=51.76  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|+|++||||||+.+.+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34689999999999999999743

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.11  E-value=0.00023  Score=55.88  Aligned_cols=23  Identities=30%  Similarity=0.681  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      .++|+|++|||||||++. +.+..
T Consensus       173 ~v~i~G~~GsGKTTll~~-l~g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKS-IMEFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHH-GGGGS
T ss_pred             EEEEECCCCCCHHHHHHH-HhCCC
Confidence            689999999999999997 44443

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.11  E-value=0.00042  Score=49.49  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=22.4

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +..++...|+|+|.+||||||+++.+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            345567889999999999999999743

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.11  E-value=0.00025  Score=50.42  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -.+|+|++|+|||||+..+..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999998543

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.09  E-value=0.00035  Score=50.77  Aligned_cols=22  Identities=36%  Similarity=0.460  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|+|++||||||+++.+.
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~   42 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQ   42 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999743

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.09  E-value=0.00035  Score=51.80  Aligned_cols=24  Identities=33%  Similarity=0.648  Sum_probs=20.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+..-|+|.|++||||||+++.+
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L   40 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHF   40 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHH
Confidence            355678999999999999999973

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.08  E-value=0.00025  Score=56.31  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|+|++|||||||++.++
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999844

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.07  E-value=0.00034  Score=50.55  Aligned_cols=20  Identities=35%  Similarity=0.504  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|.|++||||||+.+.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~   21 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEIS   21 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHH
Confidence            58999999999999999743

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.06  E-value=0.00037  Score=52.44  Aligned_cols=27  Identities=15%  Similarity=0.283  Sum_probs=20.2

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ....+.+.|+|.|++||||||+.+.|.
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~   43 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIV   43 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHH
Confidence            334456789999999999999999743

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.06  E-value=0.00046  Score=53.10  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+...|+|+|++|||||||++.+.
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3456889999999999999999743

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.06  E-value=0.00039  Score=49.76  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|+|++||||||+.+.+.
T Consensus         5 ~~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            5 PALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999853

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.05  E-value=0.0003  Score=53.72  Aligned_cols=19  Identities=32%  Similarity=0.517  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++++|++|+|||||++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala   65 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVA   65 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            9999999999999999854

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.05  E-value=0.00031  Score=56.07  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .=.|+|+|++|||||||++.++
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3469999999999999999854

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.05  E-value=0.00033  Score=50.07  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|.|++||||||+.+.+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~   22 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999843

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.05  E-value=0.00023  Score=49.18  Aligned_cols=22  Identities=18%  Similarity=0.442  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++++|++|+|||||++.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~   57 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWV   57 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.04  E-value=0.00029  Score=56.97  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      .|+|+|++|||||||++.++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998553

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.04  E-value=0.00019  Score=51.99  Aligned_cols=85  Identities=7%  Similarity=-0.043  Sum_probs=52.5

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCCCcccccHH
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAK  137 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~i~v~nk~D~~~~~~~~~  137 (221)
                      .+.+.++|+|+..  .......+..+|.++++...+...  ..+......+...   .+..++.+|+|+++.... ...+
T Consensus        75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~  149 (206)
T 4dzz_A           75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNV  149 (206)
T ss_dssp             TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHH
T ss_pred             CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHH
Confidence            3678899999865  233345567789999998876543  4555555555443   235677899999996433 2233


Q ss_pred             HHHHHHhcCceEE
Q 027593          138 QVTFHRKKNLQYY  150 (221)
Q Consensus       138 ~~~~~~~~~~~~~  150 (221)
                      ..+.....+.+++
T Consensus       150 ~~~~l~~~~~~vl  162 (206)
T 4dzz_A          150 LKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHTCCBC
T ss_pred             HHHHHHHcCCcee
Confidence            3344444555443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.03  E-value=0.00047  Score=51.63  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +..+|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999999854

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.02  E-value=0.00059  Score=49.36  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ....|+|+|++||||||+.+.+.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999998754

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.02  E-value=0.00033  Score=55.46  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|+++|++||||||+++.+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Confidence            44579999999999999999843

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.01  E-value=0.00028  Score=57.86  Aligned_cols=24  Identities=38%  Similarity=0.505  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      -.++|+|++|||||||++. +.|..
T Consensus       139 e~v~IvGpnGsGKSTLlr~-L~Gl~  162 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRT-LCSYA  162 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHH-HHHTT
T ss_pred             CEEEEECCCCCCHHHHHHH-HhCcc
Confidence            4699999999999999997 44443

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.01  E-value=0.00046  Score=49.83  Aligned_cols=24  Identities=25%  Similarity=0.270  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|+|+|++||||||+.+.+.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La   29 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLR   29 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999754

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.00  E-value=0.00036  Score=55.11  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =+++|+|++|+|||||++.+.+
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            3789999999999999998553

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.00  E-value=0.00042  Score=49.34  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+++|++||||||+.+.+.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999853

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.00  E-value=0.00048  Score=49.78  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|.|++||||||+++.+.
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~   25 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIM   25 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Confidence            3579999999999999999844

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.99  E-value=0.00041  Score=49.20  Aligned_cols=23  Identities=30%  Similarity=0.372  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ....|+++|++||||||+.+.+.
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHH
Confidence            34579999999999999999843

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.98  E-value=0.00038  Score=49.18  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+|+|++||||||+.+.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            59999999999999999743

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.98  E-value=0.00048  Score=49.42  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|+|++||||||+.+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999743

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.96  E-value=0.00057  Score=52.52  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...-|+|+|++||||||+.+.+.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3445789999999999999999864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.96  E-value=0.00056  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.252  Sum_probs=19.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ++...|+|+|++||||||+.+.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~   26 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALE   26 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999743

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.96  E-value=0.00039  Score=57.18  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|+|+|++|||||||++.+.
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHH
Confidence            45679999999999999999854

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.96  E-value=0.00042  Score=52.10  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++++|++|+|||||++.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~   70 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVA   70 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            9999999999999999854

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.96  E-value=0.00044  Score=50.95  Aligned_cols=20  Identities=35%  Similarity=0.635  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -++|+|++|+|||||++.+.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~   44 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFI   44 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58899999999999999865

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.96  E-value=0.0005  Score=47.43  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+|+|++|+||||++.++.
T Consensus        25 ~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            35899999999999999865

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.94  E-value=0.00046  Score=50.50  Aligned_cols=20  Identities=20%  Similarity=0.381  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+|+|++||||||+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIM   21 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999854

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.94  E-value=0.00041  Score=57.66  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|+|++|||||||++.++
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~  281 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIM  281 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            359999999999999999854

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.94  E-value=0.00052  Score=50.98  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+.|+|.|++||||||+.+.+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999743

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.92  E-value=0.00053  Score=49.88  Aligned_cols=23  Identities=26%  Similarity=0.187  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|.|.+||||||+.+.+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHH
Confidence            34689999999999999999743

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.91  E-value=0.00046  Score=56.75  Aligned_cols=21  Identities=24%  Similarity=0.455  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =.++|+|++|||||||++.+.
T Consensus        30 e~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHh
Confidence            468999999999999999854

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.90  E-value=0.00066  Score=47.80  Aligned_cols=21  Identities=29%  Similarity=0.408  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..++|+|++|||||||+.+++
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~   25 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWV   25 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999865

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.90  E-value=0.00061  Score=47.65  Aligned_cols=20  Identities=20%  Similarity=0.217  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+|.|.+||||||+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~   21 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLS   21 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999743

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.90  E-value=0.00083  Score=49.01  Aligned_cols=85  Identities=11%  Similarity=0.002  Sum_probs=51.8

Q ss_pred             EEEEEEEeCCCc-ccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHHH
Q 027593           61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ  138 (221)
Q Consensus        61 ~~~~~~~D~~g~-~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~~  138 (221)
                      .+.+.++|+|+. ..  ......+..+|.++++...+ ..+...+......+.... +.++.+++|+++... .. ..+.
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~-~~~~  141 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKD-GDEA  141 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCH-HHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchH-HHHH
Confidence            467889999886 32  22344567889998888765 445555555555555422 566889999998764 22 2233


Q ss_pred             HHHHHhcCceEE
Q 027593          139 VTFHRKKNLQYY  150 (221)
Q Consensus       139 ~~~~~~~~~~~~  150 (221)
                      .+.....+.+++
T Consensus       142 ~~~l~~~g~~v~  153 (209)
T 3cwq_A          142 RQLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHHTTCCBC
T ss_pred             HHHHHHcCCchh
Confidence            333344555543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.90  E-value=0.00059  Score=49.70  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...|+|.|.+||||||+.+.+.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999999844

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.88  E-value=0.00064  Score=49.58  Aligned_cols=20  Identities=45%  Similarity=0.552  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|+|+|||||+|...++.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La   21 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLA   21 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999854

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.87  E-value=0.00038  Score=49.40  Aligned_cols=23  Identities=30%  Similarity=0.164  Sum_probs=15.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...|+|.|.+||||||+.+.+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999853

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.87  E-value=0.00071  Score=49.56  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.|+|.|++||||||+.+.+.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~   25 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFA   25 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.86  E-value=0.00057  Score=51.48  Aligned_cols=20  Identities=25%  Similarity=0.252  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -|+|+|++|||||||.+.+.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            48999999999999999853

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.86  E-value=0.00061  Score=50.30  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999854

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.85  E-value=0.00042  Score=54.05  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~   36 (221)
                      -++|+|++|||||||++.++..
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            5789999999999999997643

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.85  E-value=0.00056  Score=53.72  Aligned_cols=21  Identities=29%  Similarity=0.381  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++++|++|+|||||++.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            358999999999999999844

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.84  E-value=0.0006  Score=52.02  Aligned_cols=19  Identities=32%  Similarity=0.592  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      |+|+|++|+|||||++.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~   94 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVA   94 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHH
Confidence            9999999999999999854

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.83  E-value=0.00071  Score=49.89  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|.|++||||||+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.82  E-value=0.00058  Score=51.39  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=20.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ......|+++|++||||||+.+.+.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHH
Confidence            3445789999999999999999853

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.82  E-value=0.00028  Score=51.49  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -|+|.|++||||||+++.+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            48999999999999999843

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.80  E-value=0.0006  Score=52.47  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -++|+|++|+|||||++.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            589999999999999998553

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.79  E-value=0.00078  Score=48.16  Aligned_cols=20  Identities=35%  Similarity=0.454  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|.|.+||||||+.+.+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~   21 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLY   21 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999753

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.78  E-value=0.00077  Score=48.45  Aligned_cols=21  Identities=29%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~   33 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLV   33 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999743

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.78  E-value=0.00069  Score=55.21  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =+++|+|++|||||||++.+.
T Consensus       158 q~~~IvG~sGsGKSTLl~~Ia  178 (438)
T 2dpy_A          158 QRMGLFAGSGVGKSVLLGMMA  178 (438)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            378999999999999999754

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.76  E-value=0.0031  Score=51.24  Aligned_cols=65  Identities=18%  Similarity=0.233  Sum_probs=39.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc------C------------CCC---CcccCCceeEeee--EEEEe-cCeEEEEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT------G------------EFE---KKYEPTIGVEVHP--LDFFT-NCGKIRFY   65 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~------~------------~~~---~~~~~~~~~~~~~--~~~~~-~~~~~~~~   65 (221)
                      ..+-.=|+|+|+.++|||+|+|.++.      +            .|.   .....|.|+-.-.  ..... ++..+.+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            45677788999999999999996441      1            111   0111233332221  11222 45678999


Q ss_pred             EEeCCCccc
Q 027593           66 CWDTAGQEK   74 (221)
Q Consensus        66 ~~D~~g~~~   74 (221)
                      ++||.|...
T Consensus       144 llDTEG~~d  152 (457)
T 4ido_A          144 LMDTQGTFD  152 (457)
T ss_dssp             EEEECCBTC
T ss_pred             EEeccCCCC
Confidence            999999553

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.76  E-value=0.00092  Score=47.38  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|.|++|+|||+|++.+.
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~   64 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            3468999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.76  E-value=0.00081  Score=47.18  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|.|++||||||+.+.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            59999999999999999743

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.74  E-value=0.00085  Score=49.81  Aligned_cols=22  Identities=23%  Similarity=0.164  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      --++|+|++|+|||||+..+..
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999998664

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.74  E-value=0.00083  Score=47.74  Aligned_cols=20  Identities=45%  Similarity=0.609  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+|+|++||||||+.+.+.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLA   23 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            59999999999999998743

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.74  E-value=0.0011  Score=50.82  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.+.|+|.|++||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999753

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.72  E-value=0.00088  Score=48.92  Aligned_cols=22  Identities=23%  Similarity=0.175  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      --++++|++|+|||||+..+..
T Consensus        21 ~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           21 VLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999998664

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.72  E-value=0.00079  Score=49.50  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La   26 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIK   26 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999743

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.71  E-value=0.00079  Score=50.60  Aligned_cols=21  Identities=38%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 027593           13 SFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~   33 (221)
                      .-.|+|+|++||||||+.+.+
T Consensus        48 g~~i~l~G~~GsGKSTl~~~L   68 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIM   68 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHH
Confidence            347999999999999999974

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.71  E-value=0.0012  Score=47.07  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999753

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.70  E-value=0.00093  Score=48.98  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999743

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.70  E-value=0.0011  Score=47.76  Aligned_cols=24  Identities=25%  Similarity=0.271  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.+.|+|+|.+||||||+.+.|.
T Consensus        10 ~~~~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A           10 HHHMVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHH
Confidence            346889999999999999999743

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.69  E-value=0.0009  Score=50.57  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|.+||||||+.+.+.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La   25 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            479999999999999999854

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.68  E-value=0.0011  Score=46.34  Aligned_cols=19  Identities=32%  Similarity=0.623  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      .|+|.|.+||||||+.+.+
T Consensus         9 ~i~l~G~~GsGKSTva~~L   27 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQEL   27 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            6899999999999999974

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.66  E-value=0.0011  Score=48.79  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=18.4

Q ss_pred             CCceE-EEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFK-LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~-i~v~G~~g~GKStli~~~~   34 (221)
                      .++.| |.|+|+|||||+|....+.
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            34445 4678999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.64  E-value=0.0013  Score=48.77  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+.+.+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999743

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.63  E-value=0.0013  Score=47.54  Aligned_cols=19  Identities=26%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      .|+|.|++||||||+.+.+
T Consensus         4 ~i~i~G~~GsGKst~~~~l   22 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRV   22 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7999999999999999974

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.62  E-value=0.0011  Score=49.84  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|+++|++|+|||||++.+.
T Consensus        46 ~~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHH
Confidence            469999999999999999854

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.61  E-value=0.00088  Score=59.55  Aligned_cols=49  Identities=22%  Similarity=0.150  Sum_probs=40.5

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHh
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      ++.++  |.++.+..|++++..+|+++++|||+.+     +|......+.+.+++.
T Consensus       899 ~~~LS--GGQkQRVaLArAL~~~P~LLLLDEPT~g-----LD~~s~~~L~~~L~~~  947 (986)
T 2iw3_A          899 IRGLS--GGQKVKLVLAAGTWQRPHLIVLDEPTNY-----LDRDSLGALSKALKEF  947 (986)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTTCCSEEEEECGGGT-----CCHHHHHHHHHHHHSC
T ss_pred             ccccC--HHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHh
Confidence            34455  4456668899999999999999999999     9999999888888754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.60  E-value=0.0017  Score=48.13  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +..-|+|.|++||||||+++.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~   47 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVY   47 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            45679999999999999999844

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.59  E-value=0.0016  Score=47.47  Aligned_cols=22  Identities=18%  Similarity=0.339  Sum_probs=19.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHH
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~   33 (221)
                      +...|+|+|++||||||+.+.+
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l   45 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVEL   45 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHH
Confidence            3467999999999999999974

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.58  E-value=0.0011  Score=50.50  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998664

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.55  E-value=0.0014  Score=48.32  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|.|++|+|||||++.+.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~   73 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAAC   73 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999854

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.54  E-value=0.0012  Score=52.61  Aligned_cols=22  Identities=27%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++++|++|+|||||++.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3478999999999999999854

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.54  E-value=0.0002  Score=53.07  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++|+|++|||||||++.+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~   48 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFV   48 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            4789999999999999854

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.54  E-value=0.0011  Score=46.82  Aligned_cols=22  Identities=32%  Similarity=0.515  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|.|++|+|||+|++.+.
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~   64 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLA   64 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHH
Confidence            3568999999999999999854

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.54  E-value=0.0015  Score=47.50  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+|+|++|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            46789999999999999854

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.52  E-value=0.0017  Score=48.22  Aligned_cols=25  Identities=24%  Similarity=0.367  Sum_probs=20.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+...|+|+|++||||||+.+.+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            4456789999999999999999744

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.52  E-value=0.0016  Score=46.92  Aligned_cols=21  Identities=29%  Similarity=0.281  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+++.|++|+|||+|+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~   75 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIA   75 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.47  E-value=0.0013  Score=54.85  Aligned_cols=19  Identities=37%  Similarity=0.616  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      .++|+|++|||||||++.|
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            5899999999999999985

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.46  E-value=0.0014  Score=50.52  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|+++|++|+||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999843

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.43  E-value=0.0016  Score=47.58  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.+.|+|+|++||||||+.+.+.
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999998743

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.42  E-value=0.0021  Score=47.54  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=19.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      -..+++|+|++||||||+.+.+.
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~   29 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIK   29 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHH
Confidence            45789999999999999999754

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.40  E-value=0.0017  Score=51.36  Aligned_cols=22  Identities=23%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =-++|+|++|+|||||++.+..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~  153 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAV  153 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999998654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.37  E-value=0.0019  Score=49.75  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ..|+|+|++||||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998653

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.37  E-value=0.0021  Score=43.87  Aligned_cols=23  Identities=22%  Similarity=0.278  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ....|++.|++|+|||++.+.+-
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~   45 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLH   45 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999843

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.35  E-value=0.002  Score=50.65  Aligned_cols=41  Identities=17%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             HHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ...+++++..+|+++++|||+.+     +|+.......+.++++..
T Consensus       262 ~l~~a~~l~~~p~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~  302 (339)
T 3qkt_A          262 RLAMSLYLAGEISLLILDEPTPY-----LDEERRRKLITIMERYLK  302 (339)
T ss_dssp             HHHHHHHTTTTTCEEEEECCCTT-----CCHHHHHHHHHHHHHTGG
T ss_pred             HHHHHHHhcCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHh
Confidence            45677888889999999999999     999999999999887644

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.34  E-value=0.002  Score=47.81  Aligned_cols=21  Identities=38%  Similarity=0.620  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -++|+|++|+|||||+.++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999877654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.31  E-value=0.0019  Score=46.81  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .+++.||+|+||||++.++.
T Consensus        60 ~ili~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFI   79 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            59999999999999988744

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.29  E-value=0.0024  Score=49.05  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.+++.|++|+|||++++.+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la   75 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVA   75 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHH
Confidence            35689999999999999999854

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.28  E-value=0.00073  Score=54.57  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      .++|+|++|+|||||++.+
T Consensus        62 ~~~lvG~NGaGKStLl~aI   80 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDAL   80 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHH
T ss_pred             cEEEECCCCCCHHHHHHHH

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.28  E-value=0.0024  Score=46.92  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .++|.|++|+|||||++.+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~   66 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLA   66 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999854

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.26  E-value=0.0023  Score=49.45  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|++.|++|+|||+|++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala   70 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIA   70 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHH
Confidence            3469999999999999999844

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.25  E-value=0.0013  Score=50.55  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=16.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.|+|.|++||||||+.+.|.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~   26 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFD   26 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.25  E-value=0.0026  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|.|++|+|||+|++.+.
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la   72 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVA   72 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            4569999999999999999854

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0027  Score=46.05  Aligned_cols=20  Identities=35%  Similarity=0.414  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .++|.|++|+|||+|++.+.
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~   59 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALA   59 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            39999999999999999854

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.23  E-value=0.003  Score=48.57  Aligned_cols=23  Identities=26%  Similarity=0.267  Sum_probs=19.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +..-+++.|++|+|||+|++.+.
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA   57 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVF   57 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34567888999999999999843

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.23  E-value=0.0032  Score=48.51  Aligned_cols=23  Identities=35%  Similarity=0.626  Sum_probs=19.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      .+...++|.|++|+|||++++.+
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~l   87 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKM   87 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHH
Confidence            44567999999999999999863

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.23  E-value=0.0026  Score=47.76  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|++.|++|+|||++++.+.
T Consensus        39 ~~~vll~G~~GtGKT~la~~la   60 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVA   60 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4568999999999999999854

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.22  E-value=0.0025  Score=50.48  Aligned_cols=46  Identities=17%  Similarity=0.080  Sum_probs=39.0

Q ss_pred             CChHHHHHHHHHHHh---------CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          158 YNFEKPFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~---------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      .+.++....|+.++.         ..|+++++|||.++     +|+.....+.+.+.++.
T Consensus       267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~~~l~~~l~~~~  321 (359)
T 2o5v_A          267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRRQYLLDLAASVP  321 (359)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHHHHHHHHHHhcC
Confidence            344566678888888         79999999999999     99999999999988753

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.22  E-value=0.0018  Score=48.88  Aligned_cols=24  Identities=33%  Similarity=0.354  Sum_probs=19.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+...|+|.|..||||||+++.+
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L   44 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNIL   44 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTT
T ss_pred             ccCceEEEEECCCCCCHHHHHHHH
Confidence            345578999999999999999973

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.19  E-value=0.0041  Score=47.93  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.++++|++|+|||++++.+.
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la   68 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLA   68 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHH
T ss_pred             CceEEEEECCCCcCHHHHHHHHH
Confidence            44579999999999999999744

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.19  E-value=0.0019  Score=50.44  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=38.1

Q ss_pred             ChHHHHHHHHHHHh----CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          159 NFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       159 ~i~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +.++....|++++.    ..|+++++|||+++     +|+...+.+.+.++++.
T Consensus       222 ~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~  270 (322)
T 1e69_A          222 GGEKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENS  270 (322)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhc
Confidence            44566678888875    57889999999999     99999999999998874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.18  E-value=0.0045  Score=50.09  Aligned_cols=23  Identities=43%  Similarity=0.655  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...-|+++|++||||||+.+++.
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34568899999999999999854

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.16  E-value=0.0037  Score=48.43  Aligned_cols=22  Identities=27%  Similarity=0.185  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..-|+|+||+|||||||...+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La   24 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLA   24 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEECCCcCCHHHHHHHHH
Confidence            4568999999999999999854

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.16  E-value=0.0027  Score=51.62  Aligned_cols=47  Identities=19%  Similarity=0.136  Sum_probs=39.2

Q ss_pred             CChHHHHHHHHHHHh----CCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          158 YNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++....|+.++.    ..|+++++|||.++     +|+.....+.+.++++..
T Consensus       335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~  385 (430)
T 1w1w_A          335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAA-----LDITNVQRIAAYIRRHRN  385 (430)
T ss_dssp             CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTT-----CCHHHHHHHHHHHHHHCB
T ss_pred             CcchHHHHHHHHHHHHhcCCCCCEEEeCCCccc-----CCHHHHHHHHHHHHHHhc
Confidence            345666778888887    57889999999999     999999999999988743

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.12  E-value=0.0029  Score=49.26  Aligned_cols=21  Identities=33%  Similarity=0.422  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.++|.|++|+|||||++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~   58 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAG   58 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            468999999999999999854

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.12  E-value=0.0024  Score=50.28  Aligned_cols=19  Identities=42%  Similarity=0.565  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++++|++|+||||+++.+.
T Consensus        39 ~ll~Gp~G~GKTtl~~~la   57 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALL   57 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            9999999999999999754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.11  E-value=0.0044  Score=46.93  Aligned_cols=24  Identities=21%  Similarity=0.371  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...+++.|++|+|||+|++.+.
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia   85 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIA   85 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHH
Confidence            455689999999999999999854

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.11  E-value=0.0026  Score=45.91  Aligned_cols=26  Identities=31%  Similarity=0.498  Sum_probs=21.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .......|+|+|++|+|||||...|.
T Consensus        30 v~~~g~~ilI~GpsGsGKStLA~~La   55 (205)
T 2qmh_A           30 VDIYGLGVLITGDSGVGKSETALELV   55 (205)
T ss_dssp             EEETTEEEEEECCCTTTTHHHHHHHH
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHH
Confidence            34456779999999999999999855

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.07  E-value=0.0025  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|+|+|++|||||||++.+.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHH
Confidence            45679999999999999999743

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.06  E-value=0.0032  Score=49.89  Aligned_cols=22  Identities=45%  Similarity=0.499  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.++|.|++|+|||||++.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~   66 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVL   66 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999854

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.04  E-value=0.0033  Score=50.56  Aligned_cols=20  Identities=20%  Similarity=0.232  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -++|+|++|+|||||+..+.
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            58999999999999999765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.02  E-value=0.004  Score=49.46  Aligned_cols=20  Identities=30%  Similarity=0.577  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .++|.|++|+|||||++.+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~   65 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLW   65 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            69999999999999999854

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.99  E-value=0.0038  Score=48.99  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      ++++.|++|+||||+++.+.
T Consensus        48 ~~ll~Gp~G~GKTtla~~la   67 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALA   67 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            38999999999999999854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.99  E-value=0.0038  Score=48.93  Aligned_cols=21  Identities=38%  Similarity=0.534  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-|+|+|++|||||||...+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La   28 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVA   28 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHH
Confidence            469999999999999998744

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.97  E-value=0.004  Score=48.44  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++|||||||...+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La   26 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALA   26 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            369999999999999998743

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.96  E-value=0.0021  Score=43.77  Aligned_cols=20  Identities=15%  Similarity=0.323  Sum_probs=18.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHH
Q 027593           13 SFKLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~   32 (221)
                      ...|++.|++|+|||++.+.
T Consensus        27 ~~~vll~G~~GtGKt~lA~~   46 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARY   46 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGG
T ss_pred             CCcEEEECCCCccHHHHHHH
Confidence            35699999999999999997

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.96  E-value=0.0055  Score=47.73  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|++.|++|+|||+|++.+.
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia   72 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVA   72 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHH
Confidence            45679999999999999999854

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=95.94  E-value=0.0055  Score=44.82  Aligned_cols=23  Identities=22%  Similarity=0.284  Sum_probs=19.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      |+..-|+|.|++||||||+++.+
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l   26 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYL   26 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHH
Confidence            56678999999999999999984

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.93  E-value=0.0037  Score=54.39  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .++|+|++|+|||||++.+.
T Consensus       578 i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            58999999999999999843

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.92  E-value=0.006  Score=44.94  Aligned_cols=28  Identities=32%  Similarity=0.228  Sum_probs=20.8

Q ss_pred             CCccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +...++..-|++.|..||||||+++.+.
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3345566789999999999999999743

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.91  E-value=0.0044  Score=47.65  Aligned_cols=22  Identities=27%  Similarity=0.563  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.+++.|++|+|||++++.+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la   71 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLA   71 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4579999999999999999854

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.91  E-value=0.0047  Score=43.47  Aligned_cols=27  Identities=15%  Similarity=0.319  Sum_probs=22.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ......-|++.|++|+||||+...|+.
T Consensus        12 v~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           12 LVIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            344556799999999999999998764

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.91  E-value=0.0042  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.462  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|++.|++|+|||+|++.+.
T Consensus        44 ~~~~iLL~GppGtGKT~la~ala   66 (322)
T 1xwi_A           44 PWRGILLFGPPGTGKSYLAKAVA   66 (322)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHH
T ss_pred             CCceEEEECCCCccHHHHHHHHH
Confidence            33579999999999999999854

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.90  E-value=0.004  Score=54.52  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =.++|+|++|+|||||++.+.
T Consensus       608 ~i~~ItGpNGsGKSTlLr~ia  628 (800)
T 1wb9_A          608 RMLIITGPNMGGKSTYMRQTA  628 (800)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCChHHHHHHHH
Confidence            358999999999999999844

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.89  E-value=0.0057  Score=48.43  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+...|++.|++|+|||++.+.+-
T Consensus        49 ~~~~~vll~GppGtGKT~la~~ia   72 (363)
T 3hws_A           49 LGKSNILLIGPTGSGKTLLAETLA   72 (363)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHH
Confidence            356789999999999999999843

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.87  E-value=0.005  Score=49.35  Aligned_cols=25  Identities=24%  Similarity=0.244  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ....+++|+|++|+||||+++.++.
T Consensus        33 ~~~~~~~i~G~~G~GKs~~~~~~~~   57 (392)
T 4ag6_A           33 RTNSNWTILAKPGAGKSFTAKMLLL   57 (392)
T ss_dssp             BCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccCceEEEcCCCCCHHHHHHHHHH
Confidence            3567899999999999999998664

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.87  E-value=0.0058  Score=48.15  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 027593           13 SFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+|+++|++|+||||+.+.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~l   44 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEEL   44 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHH
Confidence            467999999999999999863

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.85  E-value=0.0046  Score=50.10  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      --|++.||||+|||+|++++-
T Consensus       207 rGiLL~GPPGtGKT~lakAiA  227 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVA  227 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            359999999999999999843

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.84  E-value=0.0055  Score=45.58  Aligned_cols=25  Identities=28%  Similarity=0.325  Sum_probs=20.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .|+..-|+|.|++||||||+++.+.
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~   48 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVV   48 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4556789999999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-40
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-39
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-38
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-38
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	9e-38
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	5e-37
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-36
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-36
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	7e-35
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	1e-34
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	4e-34
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-34
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	1e-33
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-32
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	4e-32
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	1e-30
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-30
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-30
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	8e-29
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	4e-28
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	7e-28
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	9e-28
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-27
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-27
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	1e-27
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	2e-27
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	6e-27
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-26
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-25
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	7e-25
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	2e-24
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-23
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	4e-21
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-21
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	8e-21
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-21
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	5e-20
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-19
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-19
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-19
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-18
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	3e-16
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	7e-15
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	1e-14
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	3e-12
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	5e-12
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	4e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	7e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	7e-05
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.003
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.003
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (334), Expect = 6e-40
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+   +        +   ++L GNK D++ R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 133 QVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            V A Q     K+  + + E SAK++ N  + F  LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 2e-39
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAG
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV 129
           QE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   +I  +L GNK+D 
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           +NR+V + + + F RK ++ + E SAK+    +  F  L  K+   P L
Sbjct: 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-38
 Identities = 140/167 (83%), Positives = 151/167 (90%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 2e-38
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDT
Sbjct: 4   DY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  +L GNK D
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 129 VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171
           +K+++V    V         + + E SA  + N E  FL +AR++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 9e-38
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 1   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 60  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119

Query: 126 KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K DV +++  +K+          +++ E SAK+N N E  F  LAR +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 9e-38
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D+  FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDT
Sbjct: 3   DF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQE+F  +   YY      I+ +D+T   +++ +P             +  VL GNK+D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (314), Expect = 5e-37
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           +  + +      ++ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDT
Sbjct: 2   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++ +         F  K NL + E SA  + N E+ F  +  ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 8   TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67
           T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   W
Sbjct: 1   TYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN- 125
           DTAGQE+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCGN 
Sbjct: 60  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119

Query: 126 -KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +D        +   F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (300), Expect = 7e-35
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   ++    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  119 bits (299), Expect = 8e-35
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDT
Sbjct: 3   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNK 126
           AGQE++  +   YY      I+M+D+T   ++  V  W   +     +   + +V     
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 127 VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ +      +          +++E SAK N N ++ F  L   +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (298), Expect = 1e-34
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ  I+++ +  + +++++      +   +  E +P++L GNKVD+++
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  +         +    + E SAKS    ++ F  + R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            Y  FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDT
Sbjct: 2   SY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ ++    +    F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 4e-34
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV- 129
           QE+F  L   YY + Q A++++DVT   ++            +  ++I I L GNK+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-34
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           D  +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WD
Sbjct: 4   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-K 126
           TAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L GN  
Sbjct: 63  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (292), Expect = 1e-33
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           QE++  L   YY   Q AI+++D+T   ++            +   NI I L GNK D+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           N++    Q         +L + E SAK++ N  + F+ +A+KL
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-33
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV----------HPLDFFTNC 59
           DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P       
Sbjct: 3   DY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117
            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 118 IPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             IVL GNK D+ +++   ++       K  + Y+E SA +  N EK    L   +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (282), Expect = 4e-32
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++     +     + P V+ GNK+D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 129 VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
              K+++VG GG GK+    + +  EF + YEPT            +  +++    DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 130 KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++++  +         + N+ Y E SAK+  N +K F  L R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             +KLV+VG GG GK+    + +   F  +Y+PTI           +         DTAG
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAG 60

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             R V   +     R   + Y E SAK+    E  F  L R++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVK 130
           +F  L   YY     AII++D+T   T+  +             +I + + GN   +   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              ++     +    +  + E SAK+  N  + F+ ++R++
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E+F  L   YY     AI+++D+T   +++            +   I + + GNK+D++ 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  + Q   ++      ++Y  SAK N   E+ FL L +++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI           +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 132 RQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +   +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (258), Expect = 8e-29
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D+ + 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                 +     ++  L++Y  S K + N  + F YLA K 
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (254), Expect = 4e-28
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P++KLV+VGDGG GK+    +     F   Y+PTI           +         DT
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK-HTEIDNQWAILDVLDT 59

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV 127
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV +  + P++L  NKV
Sbjct: 60  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119

Query: 128 DVK-NRQV-KAKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKL 171
           D+   R+V + +      K N+ Y E SAK    N +K F  L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 7e-28
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+                    +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV           C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 132 RQVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
                +++  +++               K ++Y E SA +    +  F       
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  102 bits (253), Expect = 9e-28
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +          EN P V+ GNK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +             WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127
           E+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+ GNK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 DVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D +  +        Q       ++  +  SAK+  N +  F  +AR  
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (250), Expect = 1e-27
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 74  KFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
           +F       YY +    + ++D+T   ++ ++P W  +  +     +IP +L GNK D++
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 131 NRQVKAKQV--TFHRKKNLQYYEISAKS---NYNFEKPFLYLA 168
           +       +   F    ++  +E SAK+   N + E  F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 1e-27
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNK--VDV 129
           +FG +R+ Y   G+  +++F VT R +++ +  + R + R    +  P++L GNK  +D 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +  + +     R+  + Y E SAK   N ++ F  L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++ + G GG GK++ V R + G F + Y PT+           +         DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNK--VD 128
           +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++     R     + E SAK N+N ++ F  L  
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.7 bits (247), Expect = 6e-27
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+               +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV       +   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 RQVKAKQVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   +++   +                  ++Y E SA +    +  F    R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 2e-26
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV+VG GG GK+    + +   F   Y+P    + +      +    R    DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           E+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D++
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 131 NRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++   +++   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 94.7 bits (234), Expect = 3e-25
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE       T    +           I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNR 132
              L   Y+ + Q  I + D   R            +       +  +++  NK D+ N 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 133 QVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              A+      +   R +N       A S     +   +L+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 7e-25
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + +  + +N+P       +  C N+PI+L GNK D++N 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   +++   ++                   Y E SAK+     + F    R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 2e-24
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+              +     +DTAGQE
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLLGLYDTAGQE 68

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      +I F V    +++NV        +    N+P +L G ++D+++ 
Sbjct: 69  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170
                ++   ++                   Y E SA +    +  F      
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.3 bits (225), Expect = 1e-23
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 17/174 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V    +      C N  ++L G K D++   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 134 VKAKQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172
               +++ HR+                   Y E SA  + N  +   ++A    
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 5e-23
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT + +   G+       T    V           ++F  WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           K   L   YY   Q  I + D   R            +    E  +  I++  NK D+ +
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 132 RQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +      +T  R +N       A S     +   +L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 85.9 bits (211), Expect = 1e-21
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 58

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   +   +       +L      + IP+++ GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++   ++  + + +  Y IS K   N +    +L +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.0 bits (206), Expect = 4e-21
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 5/162 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV- 129
           +++      Y I     I+++ VT         V             IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 130 -KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
            +      +        N  + E SAK N      F  +  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.9 bits (206), Expect = 5e-21
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL I G  G GK+  V R LT  F  +Y+PT+  E       T   ++          +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQ 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DV 129
           +    R+G+   G+  ++++D+T R +++ V      L  + +  N+ ++L GNK   D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
             +    +      +    +YE SA +   N  + F  L R++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 83.9 bits (206), Expect = 6e-21
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++++G    GKTT +K+  + +                         +   WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQSQGFKLNVWDIGGQ 70

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
            K       Y+ +    I + D   R  ++       +L        +P+++  NK D+ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 131 NRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                ++      +   R +  Q    SA +    +    ++ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 83.9 bits (206), Expect = 8e-21
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  L        ++   WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLS----YKNLKLNVWDLGGQT 72

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
                   YY      I + D T +            + +    ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   K   +   + ++      SA       +   +L   +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 9e-21
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  +L ++GD  +GK++ + R LTG ++   +         +        +       A 
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKV 127
             K       +       I +F +    +++ V   H  L  +       + + L G + 
Sbjct: 64  DAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 128 DVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +     +       +      K   YYE  A    N ++ F  +A+K+
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.7 bits (200), Expect = 5e-20
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR----FYCWDT 69
           +++V++G+ G GK+T              +  +  E          G+         W+ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
            G+ ++              +      A     +         R  E+IPI+L GNK D+
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 130 KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +    ++        + ++ E SA   +N ++ F  + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 80.5 bits (197), Expect = 1e-19
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +     TI   +            +   WD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   Y+      I + D   R   ++     + L          +++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 132 R-----QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
                   +A ++   R  + +    SA +  +      +L   ++
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 2e-19
 Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++++G  G GK+   +     E   + E         +        +  Y        
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN 131
           ++              +            +         R  +++PI+L GNK D+    
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +        + ++ E SA  ++N +  F  + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 9e-19
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +     F           +            RF  WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQ-----FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 131
                 + YY + +  I++ D T R            +    +     +++  NK DVK 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 132 RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   +  ++T  +          A +     +   ++  +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 76.3 bits (186), Expect = 4e-18
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE       T    +           ++F  WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   YY +    I + D   R       +    +          +V+  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 132 RQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++          + +  Q ++ SA      ++   +L   L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 1e-17
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+ +G    GKTT +              T+    HP       G I+F  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR 132
              L   Y+      + + D      +         L  + E  ++P V+ GNK+D  N 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 QVKAKQVT------------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +A+  +               ++ ++ +  S      + + F +L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.7 bits (174), Expect = 3e-16
 Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV +G    GKTT +         +          HP         + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-----HPTSEELTIAGMTFTTFDLGGH 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
            +   +   Y       + + D                L       N+PI++ GNK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 131 NRQVKAK-----------------QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +                  +     + L+ +  S      + + F ++A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.0 bits (165), Expect = 7e-15
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++G G +GK+TF+K+          +PT G+  +  +         F   D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVP----FKMVDVGGQR 55

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE------------NIPIV 121
                    +      + +   +              L                 N+ I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           L  NK D+   +V+   +  +  +                + F    R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.9 bits (165), Expect = 1e-14
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + +L+++G G +GK+T VK+            T G+            K+ F+ +D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQ 57

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPI 120
                     +      I +   ++             L             R    I +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 121 VLCGNKVDVKNRQVKAKQVTFH 142
           +L  NK D+   +V A +    
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIE 139

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.3 bits (163), Expect = 2e-14
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 46/191 (24%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+TF+K+           PT G+  +P D  +      F   D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVI----FRMVDVGGQR 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPIV 121
                    + +    + +  ++              +                +N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 LCGNKVDVKNRQV----------------------------KAKQVTFHRKKNLQYYEIS 153
           L  NK D+   ++                                +     K +  +   
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 154 AKSNYNFEKPF 164
           A    N    F
Sbjct: 177 ATDTENIRFVF 187

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++ +  + +I           N G           +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARL-----TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
              L D +    +  + + D  A         + +     D   +  +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 KN----RQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163
                 + ++ +       +   R       + S+ +     K 
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (144), Expect = 3e-12
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+VI G    GK++ +   L G          G     L    +   +  +  DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 74  KFGGLRDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
           +     +   I             + M D T          W   + R+   +PI +  N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+    +   +V  H         +SA++    +    +L + +
Sbjct: 121 KADITGETLGMSEVNGH-----ALIRLSARTGEGVDVLRNHLKQSM 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.4 bits (145), Expect = 5e-12
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+T VK+      +  +E   G+      F        F  +D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLH----FKMFDVGGQR 53

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------------CRVCENIPIV 121
                    +      I    ++              +             +   +  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           L  NK D+   ++K   +T    +          + Y  +  F  L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (113), Expect = 9e-08
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+ IVG    GK+T     +  +      P  G    P+D        ++   DTAG 
Sbjct: 8   AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 73  EKFGGLRDGYYIHGQCA----------IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
            +   +                     +++  + A             L        +V+
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126

Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE------ISAKSNYNFEK 162
                 V +R+ +  + T   ++ L + +       SA   +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 28/179 (15%), Positives = 48/179 (26%), Gaps = 13/179 (7%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG------ 71
           +VG    GK++ +   +T    K            L       + RF   D  G      
Sbjct: 6   LVGYPNAGKSSLLAA-MTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 72  -QEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
             +  G   LR          ++        T + +              P ++  NKVD
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
           +   +          ++ L    +SA +          L   +   P     E P   P
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP---PEMPKPVP 180

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 7/161 (4%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
           +IVG    GK+T   + L  + +   E   GV   P+          F   DT G     
Sbjct: 4   LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 77  GLRDGYYIHGQC------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130
                  +          A ++  V                      +  +L  NK +  
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +  +   +     +   +SA+ N N +     + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 4e-07
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 26/167 (15%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           ++I G   +GKT+ +   LT +          V         +         D  G  K 
Sbjct: 6   IIIAGPQNSGKTSLLTL-LTTD-----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL 59

Query: 76  GGLRDGYYIHGQCAIIMF-----DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGN 125
                 Y       +                     +  D+  + E      I I++  N
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 126 KVDVKNRQVKAK----------QVTFHRKKNLQYYEISAKSNYNFEK 162
           K ++   +  +K          +V   RKK+L   E         E 
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 32/182 (17%), Positives = 49/182 (26%), Gaps = 16/182 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S  + IVG    GK+T +   L G       P        L      G+ +    DT G 
Sbjct: 5   SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGN 125
            K       +        +                        R L  +   +PI+L GN
Sbjct: 64  HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           K+D      +A +         +   +SA       +    L   +         E P  
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP--------EGPFF 175

Query: 186 AP 187
            P
Sbjct: 176 YP 177

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRF 64
           + +D     + + G+ G+GK++F+        E++     GV    ++   + +      
Sbjct: 50  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109

Query: 65  YCWDTAGQEKFGGLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP 119
             WD  G        D Y       +    +     R           D+ +        
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK-----NDIDIAKAISMMKKE 164

Query: 120 IVLCGNKVD-VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
                 KVD     +   +  TF ++K LQ  +I       F +
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE 206

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-QE 73
           ++VIVG    GK+T + R L  E         G     +        I F   DTAG + 
Sbjct: 2   RMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  KFGGLRDGYYIH------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
           +   L +   I        +  I++F + A      +    R +    +N   ++  NKV
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDA---SSPLDEEDRKILERIKNKRYLVVINKV 117

Query: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
           DV  +  + +++      +    +ISA      EK
Sbjct: 118 DVVEKINE-EEIKNKLGTDRHMVKISALKGEGLEK 151

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.6 bits (99), Expect = 7e-06
 Identities = 24/171 (14%), Positives = 46/171 (26%), Gaps = 14/171 (8%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77
           +VG    GK+T +   ++    K  +      V  L          F   D  G  +   
Sbjct: 6   LVGFPSVGKSTLLSV-VSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64

Query: 78  LRDG-------------YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
              G               +H      +        Y  +     +        P ++  
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           NK+D+       +        +   + ISA +     +    +A +L   P
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 17/179 (9%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
            IVG    GK+T + + L G+             H +      G  +    DT G     
Sbjct: 9   AIVGRPNVGKSTLLNK-LLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 77  GLRDGYYIHGQCAIIMFDV--------TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
                  ++   +  + DV          R T  +    ++        I  V   + V 
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
            K   +   Q    +   L    ISA++  N +     + + L         E+    P
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP--------EATHHFP 178

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 40.1 bits (92), Expect = 7e-05
 Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-------IRFYCW 67
           ++ + G    GK++F+   +  +   +     G       +  N            F   
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
             + +E +G + + Y    +    +  +       +              IP+++   K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 128 DVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKL 171
           D   +    K     R+        +    S+++    ++ +  + + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 1/101 (0%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L      GTGKTT + + L      +      ++    D   +      Y    AG  + 
Sbjct: 5   LAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116
                  +          ++  +     + T   DL  V  
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++   G    GK++ +      +   +   T G       F    GK           E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 74  KFGGLRDGYYIH--------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
               ++  +                ++  +  R   K++     +         +VL   
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KVDVKNRQVKA-----KQVTFHRKKNLQYYEISAKSNYNFEK 162
              + +   KA     ++       ++Q    S+      +K
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 35/175 (20%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
           +  G    GK+T + R LTG+ + +     GV    ++             D  G     
Sbjct: 4   IFAGRSNVGKSTLIYR-LTGK-KVRRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMM 57

Query: 77  GLRDGYYIHGQC---------------AIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
           GL        +                A+++ D  A            ++    E     
Sbjct: 58  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117

Query: 117 ---NIPIVLCGNKVD-VKNRQVKAKQVTFHRKKNL-----QYYEISAKSNYNFEK 162
              +IP ++  NK+D +KN Q     +    +  L      +  ISAK   N E+
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 172

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
          K++I G+ G GKTT V + +     K     IG     +       +  F    T G+
Sbjct: 2  KIIITGEPGVGKTTLV-KKIVERLGK---RAIGFWTEEVRDPETKKRTGFRIITTEGK 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.98
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.98
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.98
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.97
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.97
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.96
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.96
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.95
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.95
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.92
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.91
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.89
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.89
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.89
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.88
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.88
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.88
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.87
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.86
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.86
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.83
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.83
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.82
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.81
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.81
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.79
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.79
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.72
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.72
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.68
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.67
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.6
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.52
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.34
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.29
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.25
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.23
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.22
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.2
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.18
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.18
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.17
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.15
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.15
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.14
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.14
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.13
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.13
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.12
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.0
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.95
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.94
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.93
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.92
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.89
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.85
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.81
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.8
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.78
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.73
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.66
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.38
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.31
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.24
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.19
d1okkd2	207	GTPase domain of the signal recognition particle r	98.12
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.1
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.96
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.94
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.93
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.89
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.85
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.81
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.8
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.78
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.78
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.7
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.68
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.64
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.56
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.56
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.54
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.54
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.54
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.52
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.51
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.49
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.49
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.48
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.47
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.46
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.46
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.46
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.45
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.42
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.4
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.36
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.36
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.35
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.33
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.32
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.27
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.26
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.2
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.2
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.16
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.12
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.09
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.05
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.04
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.96
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.95
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.94
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.89
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.88
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.8
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.8
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.76
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.75
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.73
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.72
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.71
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.7
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.69
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.66
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.63
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.63
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.6
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.54
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.53
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.52
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.52
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.5
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.45
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.39
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.39
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.37
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.36
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.36
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.35
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.34
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.34
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.28
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.27
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.27
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.11
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.09
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.04
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.96
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.92
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.92
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.87
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.82
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.8
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.78
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.77
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.72
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.64
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.63
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.59
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.48
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.44
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.42
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.4
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.3
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.27
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.16
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.02
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.99
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.94
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.8
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.76
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.66
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.58
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.56
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.55
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	94.39
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.36
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.35
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.24
d1xpua3	289	Transcription termination factor Rho, ATPase domai	93.88
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.71
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.64
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.62
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.61
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.38
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.3
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.21
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.1
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.61
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.74
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.54
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	90.42
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.38
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.99
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.55
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	89.06
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.92
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.82
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.44
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.26
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.23
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.88
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	87.68
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	87.47
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.39
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	85.29
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	84.82
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	82.89
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	82.62
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	82.5
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.81
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.12
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	81.0
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.52

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-36  Score=214.57  Aligned_cols=166  Identities=83%  Similarity=1.385  Sum_probs=149.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .|||+++|++|||||||+++|+.+.+...+.++.+.++.......++..+.+.+||++|+..+...+..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            58999999999999999999999998888889999998888888888999999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHh
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ||++++.||.++..|...+.+..++.|+++|+||+|+.......+....+...+++++++||++|.|++++|.+|++.+.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999988888899999999999998776666677888889999999999999999999999999999


Q ss_pred             CCCCCc
Q 027593          173 GDPNLH  178 (221)
Q Consensus       173 ~~~~~~  178 (221)
                      .+|.+.
T Consensus       163 ~~~~~~  168 (170)
T d1i2ma_         163 GDPNLE  168 (170)
T ss_dssp             TCTTCC
T ss_pred             cCCCCC
Confidence            887653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.9e-34  Score=202.80  Aligned_cols=161  Identities=31%  Similarity=0.618  Sum_probs=147.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.+.........+..+.+.+||++|+..+...+..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ||+++..+|.++..|+..+....++.|+++|+||+|+.. +.+..+ ...++...+++++++||++|.|++++|..|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            999999999999999999988888999999999999865 344443 457888889999999999999999999999998


Q ss_pred             HhC
Q 027593          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +++
T Consensus       162 ~lq  164 (164)
T d1z2aa1         162 HLQ  164 (164)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            764

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.4e-33  Score=197.93  Aligned_cols=162  Identities=30%  Similarity=0.548  Sum_probs=139.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|.+|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|+..+...+..++++++++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.||.++..|...+.... ...|+++++||+|+.. +.+.. +...++...+++++++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            999999999999999988776553 5788999999999865 34444 45578889999999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98875

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.6e-33  Score=197.47  Aligned_cols=162  Identities=28%  Similarity=0.531  Sum_probs=146.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +|+++||+|+|.+|||||||+++|+.+.+...+.++.+..+.......+.....+.+||++|++.+...+..++..++++
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            47889999999999999999999999999999999999999988888888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ++|||++++.+|..+..|...+.... +..|+++|+||+|+.+ +.+.. +..+++...+++|+++||++|.|++++|..
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999887776654 6889999999999975 33443 455788889999999999999999999999


Q ss_pred             HHHHH
Q 027593          167 LARKL  171 (221)
Q Consensus       167 l~~~l  171 (221)
                      |++.|
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99986

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=8.6e-33  Score=197.23  Aligned_cols=162  Identities=27%  Similarity=0.554  Sum_probs=144.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +-+||+|+|++|||||||+++|+.+.+.+.+.++.+.+.........+..+.+.+|||||++.+...+..+++.++++++
T Consensus         4 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~il   83 (169)
T d3raba_           4 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFIL   83 (169)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEE
Confidence            45899999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||+++..++..+..|...+.... +..|+++++||+|+... .+.. +...++...+++++++||++|.|++++|++|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~  163 (169)
T d3raba_          84 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  163 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             EEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHH
Confidence            999999999999988887766553 57899999999998764 3333 34567888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       164 ~~i~e  168 (169)
T d3raba_         164 DVICE  168 (169)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            98865

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-33  Score=196.84  Aligned_cols=162  Identities=28%  Similarity=0.539  Sum_probs=144.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |++|||+|+|++|||||||+++|+.+.+...+.++.+..+... ....+..+.+.+||++|+..+...+..+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            6789999999999999999999999999888888888666554 566778899999999999999988899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|++++.+|..+..|...+....  ++.|+++|+||+|+..+....+ ...++...+++++++||++|.|++++|..|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999887754  5789999999999987665554 457888899999999999999999999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++++.+
T Consensus       160 ~~~i~~  165 (166)
T d1ctqa_         160 VREIRQ  165 (166)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-32  Score=195.33  Aligned_cols=162  Identities=33%  Similarity=0.519  Sum_probs=143.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      +|.|||+++|.+|||||||+++|+.+.+.+.+.++.+..+ .....+++..+.+.+||++|++.+...+..+++.+++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            5789999999999999999999999999888888887554 456677889999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCC-ChHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~  165 (221)
                      +|||++++.||.++..|...+.+..  .+.|+++++||+|+... .+.. +..+++..++++++++||+++. |++++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999999999999887653  47899999999998764 4444 4568889999999999999886 9999999


Q ss_pred             HHHHHHhC
Q 027593          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-32  Score=194.87  Aligned_cols=159  Identities=31%  Similarity=0.582  Sum_probs=144.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      |||+|+|.+|||||||+++|+.+.+...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999888999998999888888889999999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      |+++..+|.++..|...+.... ++.|+++|+||+|+.+ ..... +..+++...+++++++||++|.|++++|..|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            9999999999999988877654 6899999999999865 33343 4567889999999999999999999999999998


Q ss_pred             Hh
Q 027593          171 LA  172 (221)
Q Consensus       171 l~  172 (221)
                      |.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            74

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=195.18  Aligned_cols=162  Identities=35%  Similarity=0.615  Sum_probs=145.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|.+|||||||+++|+.+.+.....++.+.++....+.+.+..+.+.+|||+|++.+...+..+++.++++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~   83 (171)
T d2ew1a1           4 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALIL   83 (171)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEE
Confidence            35899999999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..++..+..|...+.... ...|+++|+||+|+.+. .+.. +...++...+++++++||++|.|++++|..|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~  163 (171)
T d2ew1a1          84 TYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA  163 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             eeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHH
Confidence            999999999999999988876654 57899999999998753 3433 34578888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       164 ~~l~~  168 (171)
T d2ew1a1         164 CRLIS  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-32  Score=195.85  Aligned_cols=164  Identities=30%  Similarity=0.527  Sum_probs=143.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +.+.+||+|+|.+|||||||+++|+.+.+...+.++.. +.....+.+++..+.+.+||++|+..+...+..+++.++++
T Consensus         3 ~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~   81 (173)
T d2fn4a1           3 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF   81 (173)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred             CCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhccceee
Confidence            45679999999999999999999999998887777754 55556788889999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++|||+++..+|..+..|...+...  ..+.|+++|+||+|+... ... .+...++...+++++++||++|.|++++|.
T Consensus        82 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~  161 (173)
T d2fn4a1          82 LLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFE  161 (173)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHH
T ss_pred             eeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHH
Confidence            9999999999999999998887665  357899999999998653 333 345688888999999999999999999999


Q ss_pred             HHHHHHhCC
Q 027593          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      .|++.+.+.
T Consensus       162 ~l~~~i~k~  170 (173)
T d2fn4a1         162 QLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988653

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.7e-32  Score=194.45  Aligned_cols=162  Identities=30%  Similarity=0.529  Sum_probs=140.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .|-+||+|+|.+|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+||++|+..+...+..+++++++++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            5779999999999999999999999999888888888665 456778889999999999999999888899999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||+++..+|..+..|+..+....  ++.|+++|+||+|+... .+.. +...++...+++++++||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999998887653  57899999999998653 4444 445788888999999999999999999999


Q ss_pred             HHHHHhC
Q 027593          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9998754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-32  Score=193.97  Aligned_cols=161  Identities=32%  Similarity=0.565  Sum_probs=139.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |+++||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            6889999999999999999999999999888888888554 455677888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccc-cH-HHHHHHHh-cCceEEEeecCCCCChHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV-KA-KQVTFHRK-KNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~-~~-~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +|||++++.+|.++..|...+....  ++.|+++|+||+|+..... .. +...++.. .+++++++||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            9999999999999999998887653  5789999999999976433 33 23455555 578999999999999999999


Q ss_pred             HHHHHHh
Q 027593          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      .|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-32  Score=193.83  Aligned_cols=161  Identities=25%  Similarity=0.350  Sum_probs=142.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ ...+.+++..+.+.+||++|...+...+..++..+++++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3568999999999999999999999999888888888765 456788899999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||++++.+|..+..|...+....  .+.|+++|+||+|+.. +.+..+ ...++...+++|+++||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887653  4789999999999865 344444 45788899999999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-32  Score=196.10  Aligned_cols=161  Identities=29%  Similarity=0.542  Sum_probs=141.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |++|||+|+|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+||++|+..+...+..+++.+++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            6889999999999999999999999999888888887 455667778888999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      +|||++++.+|.++..|...+....  ++.|+++|+||+|+.. +.... +...++...+++++++||++|.|++++|..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999988876653  5789999999999865 33333 445778888999999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.|.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.5e-32  Score=194.44  Aligned_cols=168  Identities=33%  Similarity=0.587  Sum_probs=151.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      .+.+||+|+|.+|||||||+++|+.+.+...+.++.+.......+.+++..+.+.+|||+|++.+...+..++..+++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            45799999999999999999999999999988889988888888889999999999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      +|+|++++.++..+..|...+....  ...|+++++||.|...+.+... ...++...++.++++||++|.|++++|.+|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887654  4688899999999887666654 457888899999999999999999999999


Q ss_pred             HHHHhCCCCCc
Q 027593          168 ARKLAGDPNLH  178 (221)
Q Consensus       168 ~~~l~~~~~~~  178 (221)
                      ++.+.+.|.++
T Consensus       165 ~~~l~~~p~l~  175 (177)
T d1x3sa1         165 VEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHTSGGGT
T ss_pred             HHHHccCcccc
Confidence            99999988653

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-32  Score=192.77  Aligned_cols=160  Identities=34%  Similarity=0.561  Sum_probs=143.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|.+|||||||+++|+.+.+...+.++.+.++......+++..+.+.+||++|++.+...+..+++.++++++
T Consensus         3 y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~il   82 (166)
T d1z0fa1           3 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   82 (166)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEE
Confidence            35899999999999999999999999988888888888998899999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|..+..|...+.... ...|+++++||+|+.... ... +...++...+++++++||++|.|++++|..|+
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~  162 (166)
T d1z0fa1          83 VYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAA  162 (166)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999888876654 578999999999986533 333 45678888899999999999999999999999


Q ss_pred             HHH
Q 027593          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       163 ~~i  165 (166)
T d1z0fa1         163 KKI  165 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.8e-32  Score=196.66  Aligned_cols=167  Identities=29%  Similarity=0.533  Sum_probs=148.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||+|++++...+..+++.++++++
T Consensus         5 ~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~   84 (194)
T d2bcgy1           5 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIII   84 (194)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||+++..+|..+..|...+... ....|+++|+||+|+.+. ....+ ...++...++.++++||++|.|++++|..|+
T Consensus        85 v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~  164 (194)
T d2bcgy1          85 VYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMA  164 (194)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHH
Confidence            99999999999998887777654 468899999999999763 33333 4567778889999999999999999999999


Q ss_pred             HHHhCCCCCc
Q 027593          169 RKLAGDPNLH  178 (221)
Q Consensus       169 ~~l~~~~~~~  178 (221)
                      +.+...+...
T Consensus       165 ~~i~~~~~~~  174 (194)
T d2bcgy1         165 RQIKESMSQQ  174 (194)
T ss_dssp             HHHHHHCCHH
T ss_pred             HHHHHHhhhc
Confidence            9887655433

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-32  Score=194.10  Aligned_cols=159  Identities=26%  Similarity=0.444  Sum_probs=138.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +|||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||++|++.+...+..++..++++++|
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv   80 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILV   80 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEE
Confidence            69999999999999999999999998888888888554 44567788889999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~---~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l  167 (221)
                      ||++++.+|.++..|...+...   ....|+++|+||+|+.. +.+.. +..+++...+++++++||++|.|++++|..|
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l  160 (171)
T d2erxa1          81 YSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL  160 (171)
T ss_dssp             EETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999998877654   25789999999999865 34444 4557888899999999999999999999999


Q ss_pred             HHHHh
Q 027593          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      ++.+.
T Consensus       161 ~~~~~  165 (171)
T d2erxa1         161 LNLEK  165 (171)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            98544

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-31  Score=191.30  Aligned_cols=160  Identities=31%  Similarity=0.512  Sum_probs=135.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +.||+|+|++|||||||+++|+.+.+...+.++.+ ........+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888877 44556677888899999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCccc-------------ccH-HHHHHHHhcC-ceEEEeecCC
Q 027593           93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ-------------VKA-KQVTFHRKKN-LQYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~~-------------~~~-~~~~~~~~~~-~~~~~~s~~~  156 (221)
                      ||++++.||.++.. |...+....++.|+++|+||+|+....             +.. +...++...+ ++|+++||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            99999999998775 455555556789999999999986421             222 3345666666 5899999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027593          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~~i~~~~~~l~~~l~~  173 (221)
                      |.|++++|+.+++++++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998763

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=191.72  Aligned_cols=162  Identities=33%  Similarity=0.594  Sum_probs=145.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      ..|||+++|.+|||||||+++|+.+.+...+.++.+.+............+.+.+||++|++.+...+..+++.++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999999999999988888889999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|+++..+|..+..|...+... .++.|+++|+||+|+... .+..+ ...++...+++++++||++|.|++++|..|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999888877655 468999999999998653 44444 4577888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.|.+
T Consensus       165 ~~i~~  169 (170)
T d1r2qa_         165 KKLPK  169 (170)
T ss_dssp             HTSCC
T ss_pred             HHHhh
Confidence            87754

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-31  Score=193.17  Aligned_cols=162  Identities=24%  Similarity=0.371  Sum_probs=137.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ....+||+|+|.+|||||||+++|+.+.+...+.++.+. .........+..+.+.+||++|++.+...+..+++.++++
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~-~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~   84 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF   84 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC-CEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceee-eeeEEEeeCCceEEeecccccccchhhhhhhhccccccee
Confidence            567899999999999999999999999998888888874 4455667778889999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCCCc-------------ccccH-HHHHHHHhcC-ceEEEee
Q 027593           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-------------RQVKA-KQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~i~v~nk~D~~~-------------~~~~~-~~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||++++.||.++. .|...+....++.|+++|+||+|+.+             +.+.. +..+++...+ +.|++||
T Consensus        85 ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~S  164 (185)
T d2atxa1          85 LICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECS  164 (185)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECC
T ss_pred             eeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEec
Confidence            9999999999998876 45555556667899999999999864             22233 2345666666 7899999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 027593          154 AKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~  172 (221)
                      |++|.|++++|+.++++++
T Consensus       165 Ak~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         165 ALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TTTCTTHHHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHc
Confidence            9999999999999999874

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-31  Score=190.90  Aligned_cols=158  Identities=19%  Similarity=0.259  Sum_probs=123.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      |||+|+|++|||||||+++|....+ ....++.+.+ ....+.+++..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~-~~~~~~~~~~-~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHT-YDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------CEE-EEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCcc-CCcCCeeeee-ecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            8999999999999999999776654 3334444433 4456778889999999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~  169 (221)
                      |++++.+|..+..|...+....  ...|+++|+||+|+... .+.. +...++...+++++++||++|.|++++|..|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999887664  46899999999998763 4443 455788889999999999999999999999998


Q ss_pred             HHhC
Q 027593          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+..
T Consensus       160 ~i~~  163 (168)
T d2gjsa1         160 QIRL  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=191.71  Aligned_cols=160  Identities=31%  Similarity=0.576  Sum_probs=137.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      +|||+|+|.+|||||||+++|+.+.+...+.++.+ ........+++..+.+.+||++|...+...+..+++.++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv   83 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLV   83 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEEe
Confidence            58999999999999999999999998888888877 45566778888999999999999999999989999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      ||.+++.||..+..|...+...  ....|+++|+||+|+... .+.. +...++...+++++++||++|.|++++|..|+
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~  163 (171)
T d2erya1          84 FSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV  163 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHH
T ss_pred             eccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHH
Confidence            9999999999999998877655  357899999999998653 3333 45578889999999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       164 ~~i~k  168 (171)
T d2erya1         164 RVIRK  168 (171)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-31  Score=191.58  Aligned_cols=165  Identities=27%  Similarity=0.471  Sum_probs=138.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      +.+.+||+|+|.+|||||||+++|+.+.+...+.++.+. .....+..++..+.+.+||++|++.+...+..+++.++++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD-NYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC-EEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceee-ceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            346799999999999999999999999998888888874 4455677888999999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCcccc--------------cHHHHHHHHhcC-ceEEEee
Q 027593           90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||+++..+|.++.. |...+.....+.|+++|+||+|+.....              ..+...++...+ +.|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999875 5666666667899999999999754211              112334555555 7999999


Q ss_pred             cCCCCChHHHHHHHHHHHhCCC
Q 027593          154 AKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       154 ~~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      |++|.|++++|..|++.++.-|
T Consensus       161 Ak~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCC
Confidence            9999999999999999887543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.7e-31  Score=190.44  Aligned_cols=161  Identities=34%  Similarity=0.588  Sum_probs=141.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +-+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||++|++.+...+..+++.++++++
T Consensus         3 ~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~   82 (175)
T d2f9la1           3 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   82 (175)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEE
Confidence            35899999999999999999999999988888888888888888999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCccc-ccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.||..+..|...+.... ++.|+++|+||+|+.+.. ... .........+.+++++||++|.|++++|..++
T Consensus        83 v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~  162 (175)
T d2f9la1          83 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  162 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHH
Confidence            999999999999999998887765 578999999999987542 332 34566777889999999999999999999999


Q ss_pred             HHHh
Q 027593          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       163 ~~i~  166 (175)
T d2f9la1         163 TEIY  166 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=2.2e-31  Score=190.70  Aligned_cols=162  Identities=32%  Similarity=0.587  Sum_probs=144.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+|+|.+|||||||+++|+.+.+.+.+.++.+.+.....+..++....+.+||++|++.+...+..+++.++++++
T Consensus         4 ~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   83 (174)
T d2bmea1           4 FLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALL   83 (174)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEE
Confidence            35899999999999999999999999998889999989888888888999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |+|.++..+|.++..|...+.... .+.|+++|+||+|+... .... ....++...+++++++||++|.|++++|.+|+
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~  163 (174)
T d2bmea1          84 VYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCA  163 (174)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHH
Confidence            999999999999999988877664 57999999999998653 3333 34577788899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +++..
T Consensus       164 ~~i~~  168 (174)
T d2bmea1         164 RKILN  168 (174)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=1.9e-31  Score=189.67  Aligned_cols=161  Identities=28%  Similarity=0.553  Sum_probs=138.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      -+||+++|.+|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||++.+...+..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            38999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcccccHH-HHHHHHhcCceEEEeecCCCCChHHHHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~  170 (221)
                      ||++++.+|.++..|........ ...|++++++|.|...+....+ ...++...+++++++||++|.|++++|.+|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999988877776664 4688899999999987655554 446788889999999999999999999999998


Q ss_pred             HhC
Q 027593          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +.+
T Consensus       162 i~~  164 (166)
T d1g16a_         162 IQE  164 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.8e-31  Score=191.00  Aligned_cols=162  Identities=33%  Similarity=0.562  Sum_probs=140.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +-+||+|+|++|||||||+++++.+.+...+.++.+.+.........+..+.+.+||++|+..+...+..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            35899999999999999999999999888888888888888888888889999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.+|..+..|...+.... ++.|+++|+||+|+... .... +...++...+++++++||++|.|++++|..|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999988876654 57899999999998653 3333 45578888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       162 ~~i~~  166 (173)
T d2a5ja1         162 KEIYR  166 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=6.1e-31  Score=191.15  Aligned_cols=164  Identities=24%  Similarity=0.423  Sum_probs=138.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i   90 (221)
                      |+.+||+++|++|||||||+++|+.+.+...+.++.+. .......+++..+.+.+||++|++++...+..+++.+++++
T Consensus         1 m~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i   79 (191)
T d2ngra_           1 MQTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD-NYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFL   79 (191)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceee-ecceeEeeCCceeeeeccccccchhhhhhhhhcccccceee
Confidence            56799999999999999999999999998888888884 44556677888899999999999999999999999999999


Q ss_pred             EEEeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccHH-HHHHHHhc-CceEEEeec
Q 027593           91 IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKAK-QVTFHRKK-NLQYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~~-~~~~~~~~-~~~~~~~s~  154 (221)
                      +|||++++.||+++.. |...+....++.|+++|+||+|+...             .+..+ ..+++... +++|+++||
T Consensus        80 lv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA  159 (191)
T d2ngra_          80 VCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSA  159 (191)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCT
T ss_pred             cccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeC
Confidence            9999999999999975 55555556678999999999998542             12233 33566664 579999999


Q ss_pred             CCCCChHHHHHHHHHHHhCCC
Q 027593          155 KSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       155 ~~~~~i~~~~~~l~~~l~~~~  175 (221)
                      ++|.|++++|..+++.+.+.+
T Consensus       160 k~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         160 LTQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             TTCTTHHHHHHHHHHHHTSCC
T ss_pred             CCCcCHHHHHHHHHHHHhcCc
Confidence            999999999999999877654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=7.4e-31  Score=187.96  Aligned_cols=164  Identities=32%  Similarity=0.634  Sum_probs=142.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+.|||+|+|.+|||||||+++|+.+.+...+.++.+..+........+..+.+.+||++|+......+..++..++++
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   82 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC   82 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceE
Confidence            45678999999999999999999999999999999999998888888898999999999999998888889999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHH-HHHHHHhc-CceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKK-NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~~i~~  162 (221)
                      ++++|.+++.+|..+..|...+....     .+.|+++|+||+|+.++.+..+ ..+++... .++++++||++|.|+++
T Consensus        83 i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e  162 (174)
T d1wmsa_          83 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAA  162 (174)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHH
T ss_pred             EEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHH
Confidence            99999999999999999988876543     3689999999999987665554 44677665 58999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|..|++.++.
T Consensus       163 ~f~~l~~~il~  173 (174)
T d1wmsa_         163 AFEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3e-31  Score=189.33  Aligned_cols=160  Identities=34%  Similarity=0.606  Sum_probs=142.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      .+||+++|.+|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+||++|++.+...+..++..++++++|
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVV   82 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEE
Confidence            58999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCc----ccccH-HHHHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN----RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~----~~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      ||++++.+|.++..|........ ...|.++++||+|+.+    +.+.. +..+++...+++++++||++|.|++++|..
T Consensus        83 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~  162 (170)
T d1ek0a_          83 YDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLG  162 (170)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHH
Confidence            99999999999998887665544 5789999999999854    23333 455788889999999999999999999999


Q ss_pred             HHHHHh
Q 027593          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.|.
T Consensus       163 i~~~i~  168 (170)
T d1ek0a_         163 IGEKIP  168 (170)
T ss_dssp             HHTTSC
T ss_pred             HHHHhc
Confidence            988654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.3e-31  Score=188.75  Aligned_cols=159  Identities=29%  Similarity=0.432  Sum_probs=134.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+|+|++|||||||+++|+.+.+...+.+|.+..+.. ....++..+.+.+||++|+..+. .+..+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            6899999999999999999999999999889998877654 44567888999999999988764 446678899999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCc-ccccH-HHHHHHHhcCceEEEeecCCCC-ChHHHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNY-NFEKPFLYL  167 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~l  167 (221)
                      ||++++.+|..+..|.......  .++.|+++|+||+|+.. +.+.. +...++...+++|+++||++|. +++++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999998876655443  35899999999999975 34444 4457888999999999999997 599999999


Q ss_pred             HHHHhC
Q 027593          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=185.73  Aligned_cols=161  Identities=29%  Similarity=0.588  Sum_probs=133.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      .+||+|+|++|||||||+++|+.+.+... ..++.+.++....+...+..+.+.+|||+|++.+...+..++++++++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            58999999999999999999999887544 45667888888889999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCCCcc-cccH-HHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~i~v~nk~D~~~~-~~~~-~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.++..+..|........ ...|+++|+||+|..+. .+.. +...++...+++++++||++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999998887766654 57899999999998764 4444 34577888899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.|.+
T Consensus       166 ~~i~k  170 (170)
T d2g6ba1         166 KELKR  170 (170)
T ss_dssp             HHHHC
T ss_pred             HHcCC
Confidence            98753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2.4e-31  Score=190.37  Aligned_cols=162  Identities=30%  Similarity=0.567  Sum_probs=115.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +-+||+|+|.+|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+||+||++.+...+..+++.++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~   84 (173)
T d2fu5c1           5 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   84 (173)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             EEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEE
Confidence            35899999999999999999999888888888889989999999999999999999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCCCcc-ccc-HHHHHHHHhcCceEEEeecCCCCChHHHHHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  168 (221)
                      |||++++.+|..+..|...+... ..+.|+++|+||+|.... ... .+....+...+++++++||++|.|++++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~  164 (173)
T d2fu5c1          85 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  164 (173)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999888887655 357999999999998763 332 245577788899999999999999999999999


Q ss_pred             HHHhC
Q 027593          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       165 ~~i~~  169 (173)
T d2fu5c1         165 RDIKA  169 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.97  E-value=1.5e-30  Score=188.06  Aligned_cols=161  Identities=35%  Similarity=0.679  Sum_probs=143.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+|+|.+|||||||+++|+.+.+...+.++.+.++........+..+.+.+||++|+......+..++..++++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCcccccHHH-HHHH-HhcCceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAKQ-VTFH-RKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~~~~~~-~~~~-~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |.++..++..+..|+..+....     .+.|+++|+||+|+.++....+. ..++ ...+++++++||++|.|++++|.+
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~  162 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT  162 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999998876653     36799999999999876655543 3444 445789999999999999999999


Q ss_pred             HHHHHhCC
Q 027593          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+.++
T Consensus       163 l~~~i~~~  170 (184)
T d1vg8a_         163 IARNALKQ  170 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99987653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.9e-30  Score=185.00  Aligned_cols=161  Identities=27%  Similarity=0.571  Sum_probs=124.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec-CeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      -+||+++|++|||||||+++|+.+.+...+.++.+.+......... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999888888887766666655544 345789999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCCCccc--ccH-HHHHHHHhcC-ceEEEeecCCCCChHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ--VKA-KQVTFHRKKN-LQYYEISAKSNYNFEK  162 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~i~v~nk~D~~~~~--~~~-~~~~~~~~~~-~~~~~~s~~~~~~i~~  162 (221)
                      |||+++..+|..+..|...+....     ...|+++++||+|+....  +.. +..+++...+ ++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998876643     368999999999987532  333 3446677765 7899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027593          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+.+
T Consensus       162 ~f~~l~~~~l~  172 (175)
T d1ky3a_         162 AFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998764

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=9.3e-30  Score=182.92  Aligned_cols=160  Identities=24%  Similarity=0.403  Sum_probs=134.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|.+|||||||+++|+.+.+...+.++.+. .......+++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~-~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFE-NYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEE-EEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceee-cccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            479999999999999999999999998888888764 4444567788899999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCCCcc-------------cccH-HHHHHHHhcC-ceEEEeecCC
Q 027593           93 FDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QVKA-KQVTFHRKKN-LQYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~~~-~~~~~~~~~~~~p~i~v~nk~D~~~~-------------~~~~-~~~~~~~~~~-~~~~~~s~~~  156 (221)
                      ||+++..||..+.. |...+....++.|+++|+||+|+...             .+.. +...++...+ +.|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            99999999998875 45555666679999999999998531             2223 3345666665 5899999999


Q ss_pred             CC-ChHHHHHHHHHHHhC
Q 027593          157 NY-NFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~-~i~~~~~~l~~~l~~  173 (221)
                      |. +++++|+.+++.+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            97 599999999998875

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9e-31  Score=189.49  Aligned_cols=162  Identities=33%  Similarity=0.562  Sum_probs=138.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecC----------eEEEEEEEeCCCcccccccccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~D~~g~~~~~~~~~~   81 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+...+          ..+.+.+|||+|++.+...+..
T Consensus         4 ~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~   83 (186)
T d2f7sa1           4 YLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTA   83 (186)
T ss_dssp             EEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHH
T ss_pred             EEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHH
Confidence            358999999999999999999999998888888887777666654432          3478999999999999999999


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCC
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~  157 (221)
                      ++++++++++|||+++..+|..+..|...+...  ....|+++|+||+|+... .+..+ ..+++..++++++++||++|
T Consensus        84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~  163 (186)
T d2f7sa1          84 FFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATG  163 (186)
T ss_dssp             HHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTT
T ss_pred             HHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCC
Confidence            999999999999999999999999998776544  256889999999998653 44443 45788888999999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027593          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~~i~~~~~~l~~~l~~  173 (221)
                      .|++++|.+|++.+.+
T Consensus       164 ~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         164 QNVEKAVETLLDLIMK  179 (186)
T ss_dssp             BTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998764

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-30  Score=182.60  Aligned_cols=160  Identities=20%  Similarity=0.303  Sum_probs=130.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCC-cccCCceeEeeeEEEEecCeEEEEEEEeCCC---cccccccccccccCccE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG---QEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g---~~~~~~~~~~~~~~~~~   88 (221)
                      .|||+++|.+|||||||+++|+.+.+.. ...++.+.+.....+.+++....+.+||+++   ++++  .+..+++.+++
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~   80 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDA   80 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccce
Confidence            5899999999999999999988776543 3445666677778888899999999999764   4444  45667899999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      +++|||+++..+|.++..|...+....  ++.|+++|+||+|+... .+..+ ..+++..++++++++||++|.|++++|
T Consensus        81 ~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f  160 (172)
T d2g3ya1          81 YLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELF  160 (172)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred             eeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHH
Confidence            999999999999999999988876543  58999999999998653 44443 456788889999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027593          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      ..|++.+..+
T Consensus       161 ~~l~~~i~~r  170 (172)
T d2g3ya1         161 EGIVRQVRLR  170 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988643

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.2e-29  Score=180.02  Aligned_cols=157  Identities=31%  Similarity=0.588  Sum_probs=136.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-cccccccCccEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~~~~~~~~~~~~i   90 (221)
                      +-|||+|+|.+|||||||+++|+.+.+...+.++.+.........+......+.+||++|...+.. .+..++.++++++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999998899999888888888999999999999999877654 4567899999999


Q ss_pred             EEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcc-cccHH-HHHHHHhcCceEEEeecCC---CCChHHH
Q 027593           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKS---NYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~---~~~i~~~  163 (221)
                      +|||++++.+|.++..|...+....  ++.|+++|+||+|+... .+..+ ..+++..++++++++||++   +.|++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999887653  57899999999998653 44544 4578889999999999987   5599999


Q ss_pred             HHHHH
Q 027593          164 FLYLA  168 (221)
Q Consensus       164 ~~~l~  168 (221)
                      |.+|+
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98774

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.2e-29  Score=177.77  Aligned_cols=157  Identities=20%  Similarity=0.367  Sum_probs=127.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      .+|.+||+++|++|||||||+++|+.+.+.. ..++.+.++ ...+.+++..+.+.+|||+|+..+     .+++.+|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE-EEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            5789999999999999999999999998754 445555444 566788999999999999998753     478889999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCCCc---ccccHH-HHHHH-HhcCceEEEeecCCCCCh
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVKAK-QVTFH-RKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~i~v~nk~D~~~---~~~~~~-~~~~~-~~~~~~~~~~s~~~~~~i  160 (221)
                      ++|||++++.||.++..|..++....    ...|+++|+||.|+..   +.+..+ ...++ ...+++|+++||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999998876553    4678999999988754   233333 33454 345789999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 027593          161 EKPFLYLARKLAG  173 (221)
Q Consensus       161 ~~~~~~l~~~l~~  173 (221)
                      +++|..+++.+..
T Consensus       155 ~~~F~~l~~~i~~  167 (175)
T d2bmja1         155 DRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.96  E-value=3.3e-29  Score=177.61  Aligned_cols=154  Identities=23%  Similarity=0.421  Sum_probs=128.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEE
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v   92 (221)
                      ++||+++|++|||||||+++|..+.+...+.+|.+......    ..+++.+.+||+||+..+...+..++..++++++|
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   77 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM   77 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeee----eeeeEEEEEeeccccccccccccccccccchhhcc
Confidence            68999999999999999999999998888888887665543    33568999999999999999999999999999999


Q ss_pred             EeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHHHH
Q 027593           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +|+++..+|.+...|+..+...  .++.|+++|+||.|+.+.....+..     ..+...++.++++||++|.|++++|+
T Consensus        78 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~  157 (164)
T d1zd9a1          78 VDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQ  157 (164)
T ss_dssp             EETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHH
T ss_pred             cccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHH
Confidence            9999999999988887777553  3689999999999987533222211     22334567899999999999999999


Q ss_pred             HHHHH
Q 027593          166 YLARK  170 (221)
Q Consensus       166 ~l~~~  170 (221)
                      +|.+.
T Consensus       158 ~l~~~  162 (164)
T d1zd9a1         158 WLIQH  162 (164)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            98874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.96  E-value=2e-28  Score=173.70  Aligned_cols=157  Identities=17%  Similarity=0.257  Sum_probs=123.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +++||+++|++|||||||+++|..+. ...+.++.+.....    +...++.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~-~~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEE----EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCC-CCcccceEeeeeee----ccccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            46899999999999999999976554 34555666644433    34466899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHHH-----HHHhcCceEEEeecCCCCChHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      |+|+++..++.....+.......  ..+.|+++|+||+|+.+.....+...     ......+.++++||++|.|++++|
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            99999999998877665554332  36899999999999976433332221     123345689999999999999999


Q ss_pred             HHHHHHHhC
Q 027593          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      ++|...+..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.96  E-value=2e-28  Score=175.41  Aligned_cols=158  Identities=17%  Similarity=0.310  Sum_probs=124.1

Q ss_pred             CccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCcc
Q 027593            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~   87 (221)
                      ..+.+++||+++|++|||||||+++|..+.+. ...++.+.+...    +...++.+.+||++|++.+...+..++..++
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~----i~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKS----VQSQGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEE----EEETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEE----eccCCeeEeEeeccccccchhHHHHHhhccc
Confidence            35677899999999999999999998777663 333444544333    3335689999999999999999999999999


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCCh
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      ++++|+|+++..++.++..|...+....  .+.|+++++||+|+..........     .......+.++++||++|.|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            9999999999999998887776665432  578999999999997643222211     223344678999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|++|++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999874

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.95  E-value=3.5e-28  Score=175.15  Aligned_cols=160  Identities=19%  Similarity=0.285  Sum_probs=122.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...+++||+++|++|||||||+++|..+.+ ....++.+......    ...++.+.+||++|++.+...+..++..+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~-~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE----EETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceEEEEE----eeCCEEEEEEecccccccchhHHhhhcccee
Confidence            567799999999999999999999766655 33445555444332    3356899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +++|+|+++..++.+...|+......  ..+.|+++++||+|+.+.....+..     ..+...++.+++|||++|.|++
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            99999999999999888877665443  2478999999999997533222211     2234456789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027593          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=170.98  Aligned_cols=158  Identities=21%  Similarity=0.291  Sum_probs=123.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      .+.+++||+++|++|||||||+++|+.+.+.. ..++.+...    .......+.+.+||+||+..++..+..++..+++
T Consensus         8 ~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   82 (173)
T d1e0sa_           8 FGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQG   82 (173)
T ss_dssp             HTTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCE
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccce
Confidence            35678999999999999999999977666533 333444333    2333456899999999999999999999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHH-----HHHHHhcCceEEEeecCCCCChH
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      +++|+|+++..++.++..|+......  ....|+++++||+|+.+.....+.     ...+...++.++++||++|.|++
T Consensus        83 ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~  162 (173)
T d1e0sa_          83 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  162 (173)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHH
Confidence            99999999999999988877765443  357999999999999764332221     12333446789999999999999


Q ss_pred             HHHHHHHHHH
Q 027593          162 KPFLYLARKL  171 (221)
Q Consensus       162 ~~~~~l~~~l  171 (221)
                      ++|++|...+
T Consensus       163 e~~~~l~~~~  172 (173)
T d1e0sa_         163 EGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhc
Confidence            9999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.93  E-value=6.9e-26  Score=159.29  Aligned_cols=153  Identities=21%  Similarity=0.239  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEE
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   93 (221)
                      +||+|+|++|||||||+++|+.+.+...+.....     .........+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999988776554333322     23344556789999999999998888899999999999999


Q ss_pred             eCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHH-----HHHHHhcCceEEEeecCCCCChHHHHHH
Q 027593           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~~i~~~~~~  166 (221)
                      |.++..++..+..|...+...  ....|+++++||+|+.+.....+.     ...+...+++++++||++|.|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999888777766543  357899999999998764333222     1344455788999999999999999999


Q ss_pred             HHHHH
Q 027593          167 LARKL  171 (221)
Q Consensus       167 l~~~l  171 (221)
                      |.++|
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.92  E-value=1.3e-25  Score=160.91  Aligned_cols=162  Identities=19%  Similarity=0.167  Sum_probs=115.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccc--------ccccc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYI   84 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~--------~~~~~   84 (221)
                      .-+|+|+|.+|||||||+|+|++.. ........+++...........+..+.+|||||........        ..++.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~-~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSC-CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC-ceeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            3479999999999999999976543 33344555566555555555556789999999976543322        23467


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-HHHHhc-CceEEEeecCCCCChHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-~~~~~~-~~~~~~~s~~~~~~i~~  162 (221)
                      .+|++++|+|+++...... ..|...+.....+.|+++|+||+|+....  .+.. .+.... ...++++||++|.|+++
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            8999999999987644322 34555555555689999999999986532  2222 223333 35788999999999999


Q ss_pred             HHHHHHHHHhCCCCCc
Q 027593          163 PFLYLARKLAGDPNLH  178 (221)
Q Consensus       163 ~~~~l~~~l~~~~~~~  178 (221)
                      +++.|++.+..+|.++
T Consensus       161 L~~~i~~~lpe~p~~~  176 (178)
T d1wf3a1         161 LKADLLALMPEGPFFY  176 (178)
T ss_dssp             HHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHhCCCCCCCC
Confidence            9999999887766654

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.92  E-value=3.2e-24  Score=153.31  Aligned_cols=157  Identities=23%  Similarity=0.307  Sum_probs=116.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~   89 (221)
                      ..+++||+|+|.+|||||||++++..+.+.. ..++.+.....    ....+..+.+||+++.......+..++..++++
T Consensus        12 ~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   86 (177)
T d1zj6a1          12 NHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEE----IVINNTRFLMWDIGGQESLRSSWNTYYTNTEFV   86 (177)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEE----EEETTEEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEE----EeecceEEEEeccccccccccchhhhhccceee
Confidence            4678999999999999999999988776643 23333332222    222468999999999999999999999999999


Q ss_pred             EEEEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHH
Q 027593           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ++++|.++..++.....+.......  ....|+++|+||+|+.......+..     ......+++++++||++|.|+++
T Consensus        87 i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e  166 (177)
T d1zj6a1          87 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  166 (177)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             eeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHH
Confidence            9999999999987766544443332  3689999999999987644332222     12244567899999999999999


Q ss_pred             HHHHHHHHH
Q 027593          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      ++++|.++|
T Consensus       167 ~~~~L~~~l  175 (177)
T d1zj6a1         167 GLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.91  E-value=8.8e-23  Score=144.32  Aligned_cols=158  Identities=21%  Similarity=0.319  Sum_probs=121.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +++||+++|.+|||||||+++|+.+.+.. ..++.+...    .......+.+.+||.++..........++...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV----ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE----EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcc-eecccceee----eeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            47999999999999999999998887654 233443222    2233356889999999999998888899999999999


Q ss_pred             EEeCCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCCCcccccHHHH-----HHHHhcCceEEEeecCCCCChHHHH
Q 027593           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++|+.+..++.....+.......  ....|+++++||.|+.......+..     ..+....++++++||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            99999888887766554443322  3578999999999997654433222     2344557899999999999999999


Q ss_pred             HHHHHHHhCC
Q 027593          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      .+|++.+..+
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999987654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.2e-24  Score=151.94  Aligned_cols=152  Identities=17%  Similarity=0.189  Sum_probs=115.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc--------ccccccC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      +||+++|++|||||||+|+|+.... ......++++.......+...+..+.+||++|.......        ...++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            7999999999999999999775443 334445555656555555556678999999996554322        2234678


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      ++.+++++|..+..++.....|...+.......|+++|+||+|+.......     ....+.+++++||++|.|++++++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~~-----~~~~~~~~~~iSAk~~~gi~~L~~  155 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGM-----SEVNGHALIRLSARTGEGVDVLRN  155 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCEE-----EEETTEEEEECCTTTCTTHHHHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHHH-----HHhCCCcEEEEECCCCCCHHHHHH
Confidence            999999999999888887777777776666689999999999986532221     123457899999999999999999


Q ss_pred             HHHHHH
Q 027593          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|++.|
T Consensus       156 ~l~~~l  161 (161)
T d2gj8a1         156 HLKQSM  161 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998764

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.89  E-value=4.6e-23  Score=147.77  Aligned_cols=159  Identities=16%  Similarity=0.120  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc----ccc---cccccCcc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG----GLR---DGYYIHGQ   87 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~----~~~---~~~~~~~~   87 (221)
                      .|+|+|.+|||||||+|+|++... .......+++...........+..+.+|||||.....    ...   ...+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHP-KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC-EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC-ceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            499999999999999999654432 2222222222222223344455678999999954321    111   22367889


Q ss_pred             EEEEEEeCCChhhhccHHHHHHHH---HhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           88 CAIIMFDVTARLTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      ++++++|+.... +.....+...+   .....++|+++|+||+|+..........+.....+.+++.+||++|.|+++++
T Consensus        82 ~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~  160 (180)
T d1udxa2          82 VLLYVLDAADEP-LKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALK  160 (180)
T ss_dssp             EEEEEEETTSCH-HHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHH
T ss_pred             hhhhhccccccc-ccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHH
Confidence            999999986542 23333333332   22224689999999999977554444455556678899999999999999999


Q ss_pred             HHHHHHHhCCC
Q 027593          165 LYLARKLAGDP  175 (221)
Q Consensus       165 ~~l~~~l~~~~  175 (221)
                      ..|...+...+
T Consensus       161 ~~i~~~l~~~~  171 (180)
T d1udxa2         161 EALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHHTSC
T ss_pred             HHHHHHHhhcC
Confidence            99999886544

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.4e-22  Score=142.53  Aligned_cols=150  Identities=19%  Similarity=0.335  Sum_probs=115.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEEEEe
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d   94 (221)
                      ||+++|++|||||||+++++.+.+. .+.++.+.+..    .....+..+.+||++|...+...+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999998877654 34555554443    344456788999999999888899999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCCCcccccHHHHHH------------HHhcCceEEEeecCCCCCh
Q 027593           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF------------HRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~i~v~nk~D~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~~i  160 (221)
                      .++..++.....|........  .+.|+++++||.|+.......+..+.            .....+.+++|||++|+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999998887776666554443  47899999999998653322221111            1233467999999999999


Q ss_pred             HHHHHHHHH
Q 027593          161 EKPFLYLAR  169 (221)
Q Consensus       161 ~~~~~~l~~  169 (221)
                      +++|++|.+
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.7e-24  Score=154.15  Aligned_cols=153  Identities=16%  Similarity=0.145  Sum_probs=111.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +++||+++|..|||||||+++|..+.++     +.+.    .+..+......+.+||++|++.+...+..++..++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~----~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGI----VETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSE----EEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccE----EEEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            4799999999999999999998866553     2332    233445567899999999999999999999999999999


Q ss_pred             EEeCCChhhhccHH-----------HHHHHHHhh-cCCCCEEEEEeCCCCCccc-----------------ccHHHH---
Q 027593           92 MFDVTARLTYKNVP-----------TWHRDLCRV-CENIPIVLCGNKVDVKNRQ-----------------VKAKQV---  139 (221)
Q Consensus        92 v~d~~~~~s~~~~~-----------~~~~~~~~~-~~~~p~i~v~nk~D~~~~~-----------------~~~~~~---  139 (221)
                      |+|+++..+|....           .|...+... ....|+++++||+|+....                 ...+..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999998885432           233333222 3578999999999962210                 001110   


Q ss_pred             --HHH------HhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          140 --TFH------RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 --~~~------~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                        .+.      ....+.++++||+++.+++++|..+...+.+
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              111      1234567889999999999999999887653

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.88  E-value=4e-23  Score=147.94  Aligned_cols=161  Identities=19%  Similarity=0.102  Sum_probs=105.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-----ccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccccc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~   84 (221)
                      +++.++|+++|++++|||||+|+|+.......     .....|.+.......+...+..+.++|++|+..+.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            45779999999999999999999774221111     1112233333333333345578899999999888877777888


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HH-HHH----HhcCceEEEeecCC
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QV-TFH----RKKNLQYYEISAKS  156 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~-~~~----~~~~~~~~~~s~~~  156 (221)
                      .+|++++++|+++.........| ..+..  .+.|+++|+||+|+........   .. ...    .....+++++||++
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~~~-~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGEHM-LILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHHHH-HHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             hccccccccccccccchhhhhhh-hhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            99999999999986443322222 22222  3789999999999976432211   11 111    12245899999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027593          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~~i~~~~~~l~~~l~~  173 (221)
                      |.|++++++.|...+..
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999987643

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=7.3e-23  Score=145.49  Aligned_cols=156  Identities=17%  Similarity=0.154  Sum_probs=101.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------ccccccccC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYIH   85 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------~~~~~~~~~   85 (221)
                      +|+|+|++|||||||+|+|++ ..........+.+.......+......+.+||++|.....         .....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK-KKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhC-CCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            799999999999999999654 4434445566777776666666677889999999943321         122233678


Q ss_pred             ccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHH
Q 027593           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~  165 (221)
                      +|+++++.+.+....... ..+...+...  +.|+++|+||+|+.+........+........++++||++|.|++++++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence            899999999876644332 3344444443  7899999999998653322222233333445678999999999999999


Q ss_pred             HHHHHHhCC
Q 027593          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+.++
T Consensus       158 ~i~~~l~e~  166 (171)
T d1mkya1         158 TIIKKLEEK  166 (171)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHhCCCC
Confidence            999987654

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=5.2e-23  Score=149.60  Aligned_cols=156  Identities=17%  Similarity=0.156  Sum_probs=118.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +++||+++|..|||||||+++|..+.+.  +.+|.|....    .+....+.+++||++|++.+...+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeE
Confidence            4799999999999999999999888763  5678886543    334467899999999999999999999999999999


Q ss_pred             EEeCCChhh-----------hccHHHHHHHHHhh-cCCCCEEEEEeCCCCCccccc------------------HHHHHH
Q 027593           92 MFDVTARLT-----------YKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVK------------------AKQVTF  141 (221)
Q Consensus        92 v~d~~~~~s-----------~~~~~~~~~~~~~~-~~~~p~i~v~nk~D~~~~~~~------------------~~~~~~  141 (221)
                      +++.++..+           ++....|...+... ..+.|+++++||.|+......                  ......
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            999988654           33455566665444 368999999999997321110                  001111


Q ss_pred             ----------HHhcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          142 ----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       142 ----------~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                                .....+.++++||++|.+++++|..+.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence                      11234567899999999999999999887764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.88  E-value=6.7e-22  Score=141.84  Aligned_cols=158  Identities=18%  Similarity=0.248  Sum_probs=110.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccE
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~   88 (221)
                      ...++.||+++|++|||||||+++|+.+.+.. ..++.+.+....  ..  .+..+..||+.+...+...+..++...+.
T Consensus         9 ~~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (186)
T d1f6ba_           9 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEEL--TI--AGMTFTTFDLGGHIQARRVWKNYLPAING   83 (186)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE--EE--TTEEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEE--Ee--cccccccccccchhhhhhHHhhhhcccce
Confidence            35678999999999999999999977766543 334444333332  22  34678899999999988888999999999


Q ss_pred             EEEEEeCCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCCCcccccHHHHHHH-----------------HhcCceE
Q 027593           89 AIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFH-----------------RKKNLQY  149 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~i~v~nk~D~~~~~~~~~~~~~~-----------------~~~~~~~  149 (221)
                      +++++|+++...+.....+......  ...+.|+++++||.|+.......+.....                 ...++.+
T Consensus        84 ~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (186)
T d1f6ba_          84 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  163 (186)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             eeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEE
Confidence            9999999999888776654444333  23689999999999986533222211111                 2224579


Q ss_pred             EEeecCCCCChHHHHHHHHHHH
Q 027593          150 YEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       150 ~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ++|||++|.|++++|++|++.+
T Consensus       164 ~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         164 FMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             EECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEeCCCCCCHHHHHHHHHHhh
Confidence            9999999999999999998753

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.87  E-value=2.3e-22  Score=144.68  Aligned_cols=161  Identities=13%  Similarity=0.106  Sum_probs=101.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEE-EEecCeEEEEEEEeCCCcccccccc----cc---cccCc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQEKFGGLR----DG---YYIHG   86 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~~g~~~~~~~~----~~---~~~~~   86 (221)
                      .|+|+|++|||||||+|+|++... . .....+.|..... .........+.+|||||........    ..   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~-~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP-K-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC-E-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC-c-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            699999999999999999654332 2 2222333333222 2222234578899999964322211    11   23467


Q ss_pred             cEEEEEEeCCChhhhccHHHHHH--HHHhh----cCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCCh
Q 027593           87 QCAIIMFDVTARLTYKNVPTWHR--DLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~--~~~~~----~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i  160 (221)
                      +.++++++............+..  .....    ..++|+++|+||+|+.+.....+........+.+++.+||++|.|+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi  160 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL  160 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCH
Confidence            88888887765544433222211  11111    1368999999999997644333333333344678999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 027593          161 EKPFLYLARKLAGDPNL  177 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~  177 (221)
                      ++++..|.+.|...|+.
T Consensus       161 ~~L~~~i~~~L~~~p~~  177 (185)
T d1lnza2         161 RELLFEVANQLENTPEF  177 (185)
T ss_dssp             HHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHHHhhhhCCCC
Confidence            99999999988766653

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=2.3e-22  Score=141.25  Aligned_cols=150  Identities=21%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc-c--------cccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-L--------RDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~-~--------~~~~~~   84 (221)
                      +||+++|.+|||||||+|+|++. .........+.+.......+...+..+.+|||||...... .        ....+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            68999999999999999996644 3334455556666665555555668899999999432111 1        111256


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~  164 (221)
                      .+|++++|+|+++.........+     ......++++++||.|........ ..........+++++||++|.|+++++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~~~-----~~~~~~~~i~~~~k~d~~~~~~~~-~~~~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRKIL-----ERIKNKRYLVVINKVDVVEKINEE-EIKNKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHHHH-----HHHTTSSEEEEEEECSSCCCCCHH-HHHHHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             hCCEEEEEEeCCCCcchhhhhhh-----hhcccccceeeeeeccccchhhhH-HHHHHhCCCCcEEEEECCCCCCHHHHH
Confidence            78999999999987654433222     223478999999999997654333 232333445789999999999999999


Q ss_pred             HHHHHH
Q 027593          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      ++|.+.
T Consensus       154 ~~I~ke  159 (160)
T d1xzpa2         154 ESIYRE  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998763

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=5.5e-22  Score=144.26  Aligned_cols=155  Identities=17%  Similarity=0.167  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|.+|||||||+++|.   +...+.+|.|.....    +......+.+||++|++.+...+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~----~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYD----FEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEE----EEETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEE----EeeeeeeeeeecccceeeecccccccccccceeEE
Confidence            45899999999999999999973   455667788865443    34467899999999999999999999999999999


Q ss_pred             EEeCCChhhhcc-------HHHHHHHHHhh-----cCCCCEEEEEeCCCCCcccc------------------cHHHHHH
Q 027593           92 MFDVTARLTYKN-------VPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQV------------------KAKQVTF  141 (221)
Q Consensus        92 v~d~~~~~s~~~-------~~~~~~~~~~~-----~~~~p~i~v~nk~D~~~~~~------------------~~~~~~~  141 (221)
                      +++.++..++..       ...+...+...     ..+.|+++++||+|+.....                  .....+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            999998765521       22233222221     35899999999999732110                  0111111


Q ss_pred             HH-----------hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          142 HR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       142 ~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      ..           ...+.++++||+++.+++.+|..+...+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            11           123557789999999999999998776653

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.83  E-value=2.6e-20  Score=133.50  Aligned_cols=151  Identities=16%  Similarity=0.135  Sum_probs=97.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc---------------ccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------------GLR   79 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~---------------~~~   79 (221)
                      +|+++|.+|||||||+|++++...  .....+|+|.....+...    .+.+|||||.....               ...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            799999999999999999765443  345666777666554332    35789999953211               111


Q ss_pred             cccccCccEEEEEEeCCChhhhcc---------HH-HHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHHHHHH-----H
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKN---------VP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFH-----R  143 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~---------~~-~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~~~~~-----~  143 (221)
                      ....+.+|++++|+|+........         .. .....+..  .+.|+++|+||+|+.... .........     .
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhccccc
Confidence            233567899999999875432211         11 12222222  379999999999975422 111111111     1


Q ss_pred             hcCceEEEeecCCCCChHHHHHHHHHHHhC
Q 027593          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~  173 (221)
                      .....++++||++|.|+++++..|.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            112358899999999999999999987653

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.83  E-value=2e-20  Score=138.49  Aligned_cols=155  Identities=20%  Similarity=0.204  Sum_probs=99.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCc----ccCCceeEeee------------EEEEecCeEEEEEEEeCCCcccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHP------------LDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~----~~~~~~~~~~~------------~~~~~~~~~~~~~~~D~~g~~~~~~   77 (221)
                      ..|+|+|++++|||||+++++.......    .....+.....            ....+......+.++||||+..|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            4499999999999999999775322110    00000100000            0011234556889999999999988


Q ss_pred             cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH------------------HHH
Q 027593           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA------------------KQV  139 (221)
Q Consensus        78 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~------------------~~~  139 (221)
                      .+...+..+|++++|+|+.+.-.......| ..+..  .+.|+++++||+|+.......                  ...
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKPQTQEAL-NILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHHHHHH-HHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcccchhHHH-HHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            888888999999999999875443332222 22222  278999999999985422110                  000


Q ss_pred             --------HHHH--------------hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          140 --------TFHR--------------KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       140 --------~~~~--------------~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                              .+..              ....+++++||.+|.|+++++..|....
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence                    0000              0124789999999999999998887754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.82  E-value=1.3e-19  Score=131.18  Aligned_cols=160  Identities=11%  Similarity=0.060  Sum_probs=93.7

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc--------
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------   77 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~--------   77 (221)
                      .+.....-.+|+|+|++|||||||+|+|++...........+.+..........   .+.+.|+++......        
T Consensus        16 ~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~d~~~~~~~~~~~~~~~~~   92 (195)
T d1svia_          16 EQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAW   92 (195)
T ss_dssp             GGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHH
T ss_pred             hHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccc---cceEEEEEeeccccccccccchh
Confidence            333334445899999999999999999775544334444555444444443332   334556665322111        


Q ss_pred             -----cccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHH-----HHHhcCc
Q 027593           78 -----LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNL  147 (221)
Q Consensus        78 -----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~-----~~~~~~~  147 (221)
                           ........++++++++|++....- .-..++..+...  ++|+++|+||+|+.......+..+     +......
T Consensus        93 ~~~~~~~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~  169 (195)
T d1svia_          93 GRMIETYITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             hhHHhhhhccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCC
Confidence                 111224567899999998765321 112334444332  789999999999865433333221     1122456


Q ss_pred             eEEEeecCCCCChHHHHHHHHHHH
Q 027593          148 QYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       148 ~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      +++.+||++|.|+++++.+|.+.+
T Consensus       170 ~~~~~SA~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         170 ELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHh
Confidence            899999999999999999999876

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.82  E-value=7.5e-20  Score=131.36  Aligned_cols=157  Identities=20%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccc------------cc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------------LR   79 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~------------~~   79 (221)
                      ..+||+|+|++|||||||+|+|++... .......+++.......+...+..+.++|++|......            ..
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc-ceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            359999999999999999999765432 22233334443433333333446788999999643221            11


Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccHHH-HHHHH-----hcCceEEEe
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQ-VTFHR-----KKNLQYYEI  152 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~~~-~~~~~-----~~~~~~~~~  152 (221)
                      ...+..+|++++|+|+....... ...+...+..  .+.|+++|+||+|+.... ...+. .+...     ....+++++
T Consensus        86 ~~~~~~~dvii~v~d~~~~~~~~-~~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v  162 (186)
T d1mkya2          86 VDSIEKADVVVIVLDATQGITRQ-DQRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  162 (186)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHhcCCEEEEeecccccchhh-HHHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEE
Confidence            22356789999999998653322 2233333333  378999999999985422 12221 11111     124579999


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027593          153 SAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~  172 (221)
                      ||++|.|++++++.|..++.
T Consensus       163 Sa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         163 SADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             BTTTTBSHHHHHHHHHHHHH
T ss_pred             eCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999987764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.4e-19  Score=130.92  Aligned_cols=115  Identities=20%  Similarity=0.252  Sum_probs=84.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc-ccccccccCccEEEEEE
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-~~~~~~~~~~~~~i~v~   93 (221)
                      +|+|+|++|||||||+++|+.+.+... .++.+.+....... ....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999988776543 34555554443322 3456789999999998775 45677789999999999


Q ss_pred             eCCChhhh-ccHHHHHHHHH-hh---cCCCCEEEEEeCCCCCc
Q 027593           94 DVTARLTY-KNVPTWHRDLC-RV---CENIPIVLCGNKVDVKN  131 (221)
Q Consensus        94 d~~~~~s~-~~~~~~~~~~~-~~---~~~~p~i~v~nk~D~~~  131 (221)
                      |+++..++ .....++..+. ..   ....|+++++||+|+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~  122 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAM  122 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTT
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCC
Confidence            99998764 33334443332 21   24689999999999975

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.81  E-value=8.9e-20  Score=132.02  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=102.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc-ccCC------ceeEeeeEEE-----------------EecCeEEEEE
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YEPT------IGVEVHPLDF-----------------FTNCGKIRFY   65 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~-~~~~------~~~~~~~~~~-----------------~~~~~~~~~~   65 (221)
                      .++.++|+++|+.++|||||+++|++...... ....      .+........                 ........+.
T Consensus         2 ~~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (195)
T d1kk1a3           2 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS   81 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred             CCCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEe
Confidence            46789999999999999999999764322110 0011      1111111100                 0112346789


Q ss_pred             EEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH----HH
Q 027593           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TF  141 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~----~~  141 (221)
                      ++||||+..|.......+..+|++++++|+.+..........+.. .......+++++.||+|+.+.....+..    ++
T Consensus        82 ~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~-~~~~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~  160 (195)
T d1kk1a3          82 FIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA-LQIIGQKNIIIAQNKIELVDKEKALENYRQIKEF  160 (195)
T ss_dssp             EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH-HHHHTCCCEEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             eeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHH-HHHhcCccceeeeecccchhhHHHHHHHHHHHHH
Confidence            999999998888777778899999999999876322222222222 2222345688899999987643222211    22


Q ss_pred             HHh---cCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          142 HRK---KNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       142 ~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ...   ..++++++||++|.|++++++.|...+
T Consensus       161 ~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         161 IEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             hccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            222   246899999999999999998887754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=5.5e-20  Score=132.61  Aligned_cols=157  Identities=13%  Similarity=0.029  Sum_probs=108.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC-----CC---------CCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTG-----EF---------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~   76 (221)
                      +|.++|+++|+.++|||||+++++..     ..         ........|+|.+.....+...+..+.++||||+..|.
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~   80 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYV   80 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHH
Confidence            46799999999999999999997641     00         11223456778888778888888899999999999988


Q ss_pred             ccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-----HHHHhc-----C
Q 027593           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKK-----N  146 (221)
Q Consensus        77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-----~~~~~~-----~  146 (221)
                      ......+..+|++++|+|+.+...-+....|.  +.......|+|+++||+|+.......+..     .+....     .
T Consensus        81 ~~~~~~~~~aD~allVVda~~G~~~QT~~~~~--~a~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~  158 (196)
T d1d2ea3          81 KNMITGTAPLDGCILVVAANDGPMPQTREHLL--LARQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (196)
T ss_dssp             HHHHHTSSCCSEEEEEEETTTCSCHHHHHHHH--HHHHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHHHHHhhcCeEEEEEEcCCCCchhHHHHHH--HHHHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCccc
Confidence            77777788999999999999764322222222  22222357899999999986532222211     222222     3


Q ss_pred             ceEEEeecCCC----------CChHHHHHHHHH
Q 027593          147 LQYYEISAKSN----------YNFEKPFLYLAR  169 (221)
Q Consensus       147 ~~~~~~s~~~~----------~~i~~~~~~l~~  169 (221)
                      .+++++|++.|          .++..++++|..
T Consensus       159 ~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             CEEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            67999999887          366666666554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.79  E-value=2e-19  Score=132.63  Aligned_cols=111  Identities=19%  Similarity=0.221  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccccccCccEEEE
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~   91 (221)
                      +.+||+++|..|||||||+++|..+.+    .+|.|.......    ..++.+.+||++|++.++..+..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~----~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQ----VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEE----ETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEE----ECcEEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999876554    457775544432    256899999999999999999999999999999


Q ss_pred             EEeCCChhhhc-----------cHHHHHHHHHhh-cCCCCEEEEEeCCCCC
Q 027593           92 MFDVTARLTYK-----------NVPTWHRDLCRV-CENIPIVLCGNKVDVK  130 (221)
Q Consensus        92 v~d~~~~~s~~-----------~~~~~~~~~~~~-~~~~p~i~v~nk~D~~  130 (221)
                      ++|.++...+.           ....|...+... ..+.|++|++||+|+.
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            99998764331           112222222221 2579999999999974

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.79  E-value=1.7e-18  Score=126.05  Aligned_cols=161  Identities=17%  Similarity=0.126  Sum_probs=101.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCc---c----cCCceeEeeeEEEE----------------------ecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---Y----EPTIGVEVHPLDFF----------------------TNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~---~----~~~~~~~~~~~~~~----------------------~~~~   60 (221)
                      .+|.++|+++|+.++|||||+++|++......   .    ....+.........                      ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            57889999999999999999999764221100   0    00011110000000                      0112


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH-
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~-  139 (221)
                      ...+.++|+||+..|.......+..+|++++|+|+.+... .......-.+.......|+++++||+|+.......... 
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~-~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFP-QPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSS-CHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceecccccccccccccccc-chhHHHHHHHHHHcCCceeeeccccCCCccchHHHHHHH
Confidence            3578999999999887776777788999999999987531 11111122222223346899999999997643322211 


Q ss_pred             ---HHHH---hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          140 ---TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       140 ---~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                         .+..   ...++++++||++|.|++++++.|...+
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence               1111   1247899999999999999999888754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=4.9e-19  Score=133.21  Aligned_cols=137  Identities=18%  Similarity=0.183  Sum_probs=99.2

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHhc--CCCCC--------------cccCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           12 PSF-KLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~-~i~v~G~~g~GKStli~~~~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      .++ +|+++|+.|+|||||+.+++.  +....              ......+++.......+.+.+..++++||||+..
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            345 699999999999999999764  11110              1122334555555566667788999999999999


Q ss_pred             ccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEE
Q 027593           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        75 ~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~  151 (221)
                      |.......+..+|++++|+|+.+.--....+.|......   ++|.++++||+|........-..+....++...++
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~---~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp  157 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV  157 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTT---TCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHc---CCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence            999999999999999999999988666655666544433   89999999999998766555444555555554333

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2e-17  Score=117.73  Aligned_cols=159  Identities=18%  Similarity=0.144  Sum_probs=98.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc---------ccccccccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~---------~~~~~~~~~   84 (221)
                      -.|+|+|.+|||||||+|+|++... .......+++..............+..+|++|....         .........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc-eeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            4589999999999999999765443 222223333333333333334456677888884321         222233345


Q ss_pred             CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH--HHHHHHHhcC-ceEEEeecCCCCChH
Q 027593           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKN-LQYYEISAKSNYNFE  161 (221)
Q Consensus        85 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~--~~~~~~~~~~-~~~~~~s~~~~~~i~  161 (221)
                      .+++++++.|......  ....+...+..  ...|.++++||+|........  .........+ .+++++||++|.|++
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~  160 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  160 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence            6778888888765322  12222222222  367899999999976543222  2223334444 589999999999999


Q ss_pred             HHHHHHHHHHhCCCCC
Q 027593          162 KPFLYLARKLAGDPNL  177 (221)
Q Consensus       162 ~~~~~l~~~l~~~~~~  177 (221)
                      +++..|...|.+.|..
T Consensus       161 ~L~~~i~~~lpe~~~~  176 (179)
T d1egaa1         161 TIAAIVRKHLPEATHH  176 (179)
T ss_dssp             HHHHHHHTTCCBCCCS
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999999887666554

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=7e-18  Score=122.99  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCccccccccccc----ccCcc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----YIHGQ   87 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~----~~~~~   87 (221)
                      ++.+|+|+|++|||||||+|+|+++.+.+      +++.......+...+..+.+||+||+..+...+..+    ...++
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            46799999999999999999988766543      233344455666677889999999988766555444    34557


Q ss_pred             EEEEEEeCCC-hhhhccHHHHHHHHHh----h-cCCCCEEEEEeCCCCCccc
Q 027593           88 CAIIMFDVTA-RLTYKNVPTWHRDLCR----V-CENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        88 ~~i~v~d~~~-~~s~~~~~~~~~~~~~----~-~~~~p~i~v~nk~D~~~~~  133 (221)
                      .+++++|+.+ ..++.....|+..+..    . ..+.|+++++||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8888888664 5566666666544322    2 2579999999999987643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.72  E-value=8e-17  Score=118.00  Aligned_cols=152  Identities=18%  Similarity=0.196  Sum_probs=96.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhc--CCCCC-----------------------------cccCCceeEeeeEEEEe
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYEPTIGVEVHPLDFFT   57 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~   57 (221)
                      .....+||+++|+.++|||||+++|+.  +....                             ......+.+.......+
T Consensus         5 ~~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~   84 (222)
T d1zunb3           5 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF   84 (222)
T ss_dssp             TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred             ccCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEE
Confidence            455678999999999999999999763  21110                             01112233333333444


Q ss_pred             cCeEEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc-ccH
Q 027593           58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA  136 (221)
Q Consensus        58 ~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~-~~~  136 (221)
                      ...+.++.++|+||+..|-.....-...+|++++|+|+.....-+..  ..-.+.....-+.++++.||+|+.+.. ...
T Consensus        85 ~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~--e~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~  162 (222)
T d1zunb3          85 STAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLLGIKHIVVAINKMDLNGFDERVF  162 (222)
T ss_dssp             ECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHTTCCEEEEEEECTTTTTSCHHHH
T ss_pred             eccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchH--HHHHHHHHcCCCEEEEEEEccccccccceeh
Confidence            45567899999999999988777778899999999999876433322  222222222234578899999997522 111


Q ss_pred             -----HHHHHHHhcC-----ceEEEeecCCCCChHH
Q 027593          137 -----KQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (221)
Q Consensus       137 -----~~~~~~~~~~-----~~~~~~s~~~~~~i~~  162 (221)
                           +...+....+     ++++++||++|.|+.+
T Consensus       163 ~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         163 ESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence                 1122333332     4789999999999844

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.72  E-value=9e-18  Score=121.85  Aligned_cols=119  Identities=18%  Similarity=0.133  Sum_probs=87.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--------CCCC-------cccCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~--------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   75 (221)
                      +|.++|+++|+.++|||||+++|+..        ....       ......|+|.......+...+..+.++||||+..|
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df   80 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY   80 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh
Confidence            46799999999999999999997631        0000       01112367777777777778889999999999999


Q ss_pred             cccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCCcc
Q 027593           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR  132 (221)
Q Consensus        76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~~~  132 (221)
                      .......+..+|++++|+|+.+....+....|......   +.| +++++||+|+.+.
T Consensus        81 ~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~---gi~~iiv~iNK~D~~~~  135 (204)
T d2c78a3          81 IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---GVPYIVVFMNKVDMVDD  135 (204)
T ss_dssp             HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---TCCCEEEEEECGGGCCC
T ss_pred             HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---CCCeEEEEEEecccCCC
Confidence            88877888999999999999887555444433333222   555 7788999998653

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.68  E-value=5.6e-17  Score=119.45  Aligned_cols=152  Identities=21%  Similarity=0.238  Sum_probs=95.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CcccCCceeEeeeEEEEecCeE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCGK   61 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~   61 (221)
                      +|.++|+++|+.++|||||+.+|+.  |...                           .......|.+.......+...+
T Consensus         1 kp~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~   80 (224)
T d1jnya3           1 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   80 (224)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCC
Confidence            3679999999999999999998763  1100                           0112234455555555566677


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhh-----ccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~  136 (221)
                      ..+.++||||+..|...+......+|++++|+|+.+...-     .....-...+.......++|+++||+|+.......
T Consensus        81 ~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~  160 (224)
T d1jnya3          81 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE  160 (224)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred             ceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccH
Confidence            8999999999999998888889999999999999986321     11111111222223456789999999986532222


Q ss_pred             HH--------HHHHHh-----cCceEEEeecCCCCChHH
Q 027593          137 KQ--------VTFHRK-----KNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       137 ~~--------~~~~~~-----~~~~~~~~s~~~~~~i~~  162 (221)
                      ..        ..+...     ...+++++|+..|.|+..
T Consensus       161 ~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         161 KRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             HHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            11        112222     235789999999998753

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=4.6e-16  Score=111.05  Aligned_cols=162  Identities=12%  Similarity=0.040  Sum_probs=81.9

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeE-EEEecCeEEEEEEEeCCCcccccccc-----
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL-DFFTNCGKIRFYCWDTAGQEKFGGLR-----   79 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~~g~~~~~~~~-----   79 (221)
                      ++...-..++|+++|.+|||||||+|+++....... ....+.+.... ......+...+..++.++........     
T Consensus         9 ~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (188)
T d1puia_           9 RHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLAR-TSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQR   87 (188)
T ss_dssp             GGSSCSCSEEEEEEECTTSSHHHHHTTTCCC--------------CCEEEEEEETTEEEEECCCCC------CCHHHHHH
T ss_pred             hHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEe-ecccccceeeccceecccccceeeeecccccchhhhhhhhhhh
Confidence            344566689999999999999999999655443222 22222222222 22222222222222222211111110     


Q ss_pred             --ccc---ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH----HHHHh--cCce
Q 027593           80 --DGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK--KNLQ  148 (221)
Q Consensus        80 --~~~---~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~----~~~~~--~~~~  148 (221)
                        ...   ......++.+.+........ ...+......  ...+.++++||+|+.+........    +....  ...+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~  164 (188)
T d1puia_          88 ALGEYLEKRQSLQGLVVLMDIRHPLKDL-DQQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQ  164 (188)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEE
T ss_pred             hhhhhhhhhhheeEEEEeecccccchhH-HHHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCc
Confidence              011   22334455555554432211 1222222222  378899999999987643222211    11111  2357


Q ss_pred             EEEeecCCCCChHHHHHHHHHHH
Q 027593          149 YYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ++.+||++|.|+++++..|...+
T Consensus       165 ~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         165 VETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999999999887643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.4e-16  Score=118.04  Aligned_cols=153  Identities=17%  Similarity=0.177  Sum_probs=101.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CCCC---------------------------CcccCCceeEeeeEEEEecCe
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFE---------------------------KKYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +++.++|+++|+.++|||||+.+++.  |...                           .......|+|.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            56679999999999999999999763  1110                           001123566666666666667


Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhh---h--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc-
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~-  134 (221)
                      +.++.++||||+..|...+..-+..+|++++|+|+.....   +  .........+.....-+++|+++||+|+.+... 
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iNKmD~~~~d~~  162 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDES  162 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEECCCCCCCCHH
Confidence            8999999999999998888888899999999999986521   1  111111112222223345788999999865221 


Q ss_pred             cH-----HHHHHHHhc-----CceEEEeecCCCCChHH
Q 027593          135 KA-----KQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       135 ~~-----~~~~~~~~~-----~~~~~~~s~~~~~~i~~  162 (221)
                      ..     +...+....     .++++++|+..|.|+-+
T Consensus       163 ~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         163 RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            11     112222222     35789999999988654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.64  E-value=9.6e-16  Score=113.94  Aligned_cols=153  Identities=19%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CCCCC---------------------------cccCCceeEeeeEEEEecCeE
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCGK   61 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~   61 (221)
                      ++.++|+++|+.++|||||+.+|+.  |....                           ......|.+.......+....
T Consensus        22 k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~  101 (245)
T d1r5ba3          22 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  101 (245)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCcccccccccccccc
Confidence            4578999999999999999999753  11100                           111122333333333444556


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhh---h--ccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccH
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~  136 (221)
                      .++.++|+||+..|......-...+|++++|+|+....-   +  .........+........+++++||+|+.......
T Consensus       102 ~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iNKmD~~~~~~~e  181 (245)
T d1r5ba3         102 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE  181 (245)
T ss_dssp             EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred             ceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEEcCCCCccchhH
Confidence            789999999999998888888899999999999987531   1  11111111222222344588999999986432221


Q ss_pred             HH-------H-HHHHh-------cCceEEEeecCCCCChHHH
Q 027593          137 KQ-------V-TFHRK-------KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       137 ~~-------~-~~~~~-------~~~~~~~~s~~~~~~i~~~  163 (221)
                      ..       . .....       ..++++++||++|.|+.++
T Consensus       182 ~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~  223 (245)
T d1r5ba3         182 ERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDR  223 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSC
T ss_pred             HHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccc
Confidence            11       1 11111       1357999999999999764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.60  E-value=1.3e-15  Score=114.01  Aligned_cols=113  Identities=19%  Similarity=0.221  Sum_probs=84.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC--CCCc--c------------cCCceeEeeeEEEEecCeEEEEEEEeCCCccccccc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGE--FEKK--Y------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~--~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~   78 (221)
                      +|+|+|+.|+|||||+.+++...  ....  .            ....+.+.......+...+..+.++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            69999999999999999976321  1110  0            012334444444555556788999999999999988


Q ss_pred             ccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        79 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ....++.+|++++|+|+.+.-.......|......   ++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~---~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAWTVAERL---GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHHHhhhhc---cccccccccccccc
Confidence            88889999999999999987665555555544333   89999999999974

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=2.6e-14  Score=107.07  Aligned_cols=120  Identities=13%  Similarity=0.076  Sum_probs=76.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccc---------
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG---------   81 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~---------   81 (221)
                      ..+++|+|+|.+|+|||||+|.+++.. ........++|...........+..+.++||||..........         
T Consensus        30 ~~~l~I~LvG~tg~GKSSliN~ilg~~-~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~  108 (257)
T d1h65a_          30 VNSLTILVMGKGGVGKSSTVNSIIGER-VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  108 (257)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhCCC-ceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHH
Confidence            567999999999999999999966543 3334455566666655554445678999999996533221111         


Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC---CCCEEEEEeCCCCCc
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---NIPIVLCGNKVDVKN  131 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~i~v~nk~D~~~  131 (221)
                      .....+++++|++++....-......+..+...++   ..++++|+||+|...
T Consensus       109 ~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         109 LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            12345788888887654222222233333333322   357899999999854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.6e-14  Score=113.49  Aligned_cols=158  Identities=15%  Similarity=0.173  Sum_probs=90.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCc---ccCCceeEeeeEEEEecCeEEEEEEEeCCCcccccccccc-----c
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----Y   82 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~-----~   82 (221)
                      ...++|+|+|.+|+|||||+|++++......   .....++|.....+... ....+.+|||||..........     .
T Consensus        54 ~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~~  132 (400)
T d1tq4a_          54 SSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKMK  132 (400)
T ss_dssp             HCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHhh
Confidence            3469999999999999999999765332211   11223345444444332 3345789999996644332222     2


Q ss_pred             ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcc--------cccHH-H--------HHHHHhc
Q 027593           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--------QVKAK-Q--------VTFHRKK  145 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~--------~~~~~-~--------~~~~~~~  145 (221)
                      +..+|.++++.|..-...   -..+...+...  ++|+++|+||+|....        ....+ .        .......
T Consensus       133 ~~~~d~~l~~~~~~~~~~---d~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~~  207 (400)
T d1tq4a_         133 FYEYDFFIIISATRFKKN---DIDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  207 (400)
T ss_dssp             GGGCSEEEEEESSCCCHH---HHHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hhcceEEEEecCCCCCHH---HHHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHHc
Confidence            556788888876443221   12333333332  7999999999995210        00111 1        1111122


Q ss_pred             C---ceEEEeecCC--CCChHHHHHHHHHHHhCC
Q 027593          146 N---LQYYEISAKS--NYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       146 ~---~~~~~~s~~~--~~~i~~~~~~l~~~l~~~  174 (221)
                      +   -++|.+|...  ..++..+...+.+.+...
T Consensus       208 ~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~  241 (400)
T d1tq4a_         208 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY  241 (400)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred             CCCCCCEEEecCCcccccCHHHHHHHHHHHhHHH
Confidence            2   2467777664  347888888888876543

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.8e-14  Score=111.36  Aligned_cols=115  Identities=17%  Similarity=0.219  Sum_probs=84.2

Q ss_pred             ceE-EEEEcCCCCcHHHHHHHHhc--CCCCC------------cccCCceeEeeeEEEEe----------------cCeE
Q 027593           13 SFK-LVIVGDGGTGKTTFVKRHLT--GEFEK------------KYEPTIGVEVHPLDFFT----------------NCGK   61 (221)
Q Consensus        13 ~~~-i~v~G~~g~GKStli~~~~~--~~~~~------------~~~~~~~~~~~~~~~~~----------------~~~~   61 (221)
                      .+| |+|+|+.++|||||+.+|+.  |....            ......|.+......++                .+..
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~   95 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   95 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccc
Confidence            464 99999999999999999763  11110            01112233333333322                3356


Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCC
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~  130 (221)
                      ..+.++||||+.+|.......++-+|++++|+|+.++-.......|......   +.|.++++||+|..
T Consensus        96 ~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr~  161 (341)
T d1n0ua2          96 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHHH
T ss_pred             eEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECcccc
Confidence            7899999999999999988889999999999999998777766666665544   89999999999974

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.34  E-value=6.6e-13  Score=98.30  Aligned_cols=109  Identities=16%  Similarity=0.038  Sum_probs=63.5

Q ss_pred             EEEEEEeCCCccccccccccc-----ccCccEEEEEEeCCChh---hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           62 IRFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTARL---TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~-----~~~~~~~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      ..+.+.|+||+..+.......     ....+.++++.|+....   .+........... ..-..|.++++||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~-~~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHH-HHhCCCceeeeeccccccHH
Confidence            458899999987643222211     22456788888875432   2221111111111 11278999999999986532


Q ss_pred             ccHHHH----------------------------HHH--HhcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          134 VKAKQV----------------------------TFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       134 ~~~~~~----------------------------~~~--~~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ......                            ...  .....+++++||++|+|+++++..|.+..
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            110000                            000  11246899999999999999998887754

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=4.4e-12  Score=92.38  Aligned_cols=54  Identities=19%  Similarity=0.239  Sum_probs=36.6

Q ss_pred             EEEeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       149 ~~~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ......++|...+  ...|++++..+|+++++|||+++     +|+....++...++++..
T Consensus       125 ~~~~~~LSGGqkQ--RvaiAraL~~~P~illlDEPts~-----LD~~~~~~i~~~l~~l~~  178 (232)
T d2awna2         125 DRKPKALSGGQRQ--RVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK  178 (232)
T ss_dssp             -----------------CHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             hCChhhCCHHHHH--HHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            3345556655544  48899999999999999999999     999999999999988744

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.25  E-value=3.8e-12  Score=93.70  Aligned_cols=53  Identities=17%  Similarity=0.230  Sum_probs=45.3

Q ss_pred             ecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +.++  |-++....|++++..+|+++++|||+++     +|+....++.+.+++++.+..
T Consensus       138 ~~LS--GG~~Qrv~iAraL~~~P~lLllDEPt~g-----LD~~~~~~i~~~i~~l~~~g~  190 (240)
T d1ji0a_         138 GTLS--GGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQEGT  190 (240)
T ss_dssp             SSSC--HHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTTC
T ss_pred             hhCC--HHHHHHHHHHHHHHhCCCEeeecCCCcC-----CCHHHHHHHHHHHHHHHhCCC
Confidence            4444  4455568899999999999999999999     999999999999999877654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=3.2e-12  Score=93.50  Aligned_cols=52  Identities=15%  Similarity=0.226  Sum_probs=44.6

Q ss_pred             EeecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          151 EISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ..+.++|...+.  .+|++++..+|+++++|||+++     +|+....+..+.++++..
T Consensus       133 ~~~~LSGGq~QR--vaiAraL~~~P~iLllDEPts~-----LD~~~~~~i~~ll~~l~~  184 (239)
T d1v43a3         133 YPAQLSGGQRQR--VAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQ  184 (239)
T ss_dssp             CTTTCCSSCHHH--HHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHH--HHHHhhhccCCCceeecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            355666666555  7899999999999999999999     999999999999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.22  E-value=6.3e-12  Score=91.32  Aligned_cols=51  Identities=24%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ++.++  |-++...+|++++..+|+++++|||+++     +|+....+..+.++++..
T Consensus       125 ~~~LS--GG~~QRvaiAraL~~~P~iLllDEPts~-----LD~~~~~~i~~~l~~l~~  175 (229)
T d3d31a2         125 PLTLS--GGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHK  175 (229)
T ss_dssp             GGGSC--HHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHhcchhhhhhhhccCCceeecCCCcC-----CCHHHHHHHHHHHHHHHh
Confidence            34444  4456668899999999999999999999     999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.20  E-value=7.2e-11  Score=86.32  Aligned_cols=52  Identities=19%  Similarity=0.261  Sum_probs=43.9

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+.++|  .++.+..|++++..+|+++++|||+++     +|+....++.+.++++..+
T Consensus       137 p~~LSG--GqkQRv~IAraL~~~P~iLllDEPt~~-----LD~~~~~~i~~~l~~l~~~  188 (240)
T d1g2912         137 PRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQRQ  188 (240)
T ss_dssp             GGGSCH--HHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCH--HHHHHHHHHHHHhcCCCEEEecCCCcc-----cCHHHHHHHHHHHHHHHhc
Confidence            444554  445568899999999999999999999     9999999999999987543

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.18  E-value=2.7e-11  Score=88.92  Aligned_cols=53  Identities=23%  Similarity=0.291  Sum_probs=44.5

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ++..+  +-++....|++++..+|+++++|||+++     +|+...++..+.+++++.+.
T Consensus       131 ~~~lS--gG~~qrv~iA~al~~~p~illLDEPt~g-----LD~~~~~~i~~~i~~~~~~g  183 (238)
T d1vpla_         131 VSTYS--KGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQEG  183 (238)
T ss_dssp             GGGCC--HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             hhhCC--HHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHhcC
Confidence            44444  4455568899999999999999999999     99999999999999887654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.18  E-value=2.1e-11  Score=88.67  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.++....|++++..+|+++++|||+++     +|+....+..+.++++..+
T Consensus       148 GGqkQRvaIAraL~~~P~lLllDEPTs~-----LD~~~~~~i~~~l~~l~~~  194 (230)
T d1l2ta_         148 GGQQQRVAIARALANNPPIILADQPTGA-----LDSKTGEKIMQLLKKLNEE  194 (230)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhcCCCEEEecCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence            4556668899999999999999999999     9999999999999998543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.17  E-value=1.8e-11  Score=90.83  Aligned_cols=54  Identities=9%  Similarity=0.163  Sum_probs=45.6

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      ++.++|.+  +.+..|++++..+|+++++|||+++     +|+...+++.+.+++++.+..
T Consensus       148 ~~~LSgG~--~Qrv~iAraL~~~P~llilDEPt~g-----LD~~~~~~i~~~i~~l~~~g~  201 (254)
T d1g6ha_         148 AGELSGGQ--MKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAKGI  201 (254)
T ss_dssp             GGGSCHHH--HHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTTC
T ss_pred             hhhCCcHH--HHHHHHHHHHHhCcCchhhcCCccc-----CCHHHHHHHHHHHHHHHHCCC
Confidence            45555444  5557899999999999999999999     999999999999998876654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.15  E-value=4.3e-11  Score=87.50  Aligned_cols=47  Identities=23%  Similarity=0.341  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-++.+..|+++|..+|+++++|||+++     +|+....+..+.++++..+
T Consensus       143 GGqkQRvaiARaL~~~P~llllDEPt~~-----LD~~~~~~i~~~i~~l~~~  189 (242)
T d1oxxk2         143 GAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQSR  189 (242)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHhHHhhcccceeecCCccC-----CCHHHHHHHHHHHHHHHhc
Confidence            5556668999999999999999999999     9999999999999987543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.15  E-value=4.7e-11  Score=87.09  Aligned_cols=51  Identities=27%  Similarity=0.275  Sum_probs=43.4

Q ss_pred             eecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++  |.++.+..|++++..+|+++++|||+++     +|+.......+.++++..
T Consensus       124 ~~~LS--GG~kQRvaiAral~~~P~illlDEPts~-----LD~~~~~~i~~~i~~l~~  174 (240)
T d2onka1         124 PARLS--GGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             GGGSC--HHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHH
T ss_pred             hhhCC--HHHHHHHHHHHHHhccCCceEecCcccc-----CCHHHHHHHHHHHHHHHH
Confidence            34444  4456668899999999999999999999     999999999999988754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=2.6e-10  Score=87.64  Aligned_cols=82  Identities=18%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEe------------------------cCeEEEEEEEeC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------------------------NCGKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~D~   69 (221)
                      .+|+++|.|+||||||+|++....  ......+++|..+.....                        ......+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~--~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCC--CchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            479999999999999999966433  333444544444332211                        123467999999


Q ss_pred             CCcccc-------cccccccccCccEEEEEEeCCC
Q 027593           70 AGQEKF-------GGLRDGYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        70 ~g~~~~-------~~~~~~~~~~~~~~i~v~d~~~   97 (221)
                      ||....       ....-..++.+|+++.|+|+.+
T Consensus        79 pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            995432       1122233678999999999863

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.4e-10  Score=89.00  Aligned_cols=83  Identities=11%  Similarity=-0.044  Sum_probs=50.0

Q ss_pred             cccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHH---HHHHH--------HhcCceEE
Q 027593           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFH--------RKKNLQYY  150 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~---~~~~~--------~~~~~~~~  150 (221)
                      +...+|.+++|...........+..-+-.       .+-++|+||+|.........   ....+        .....+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e-------~aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLME-------VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHH-------HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhc-------cccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            34567999999887766555444333322       34588999999876332211   11111        11234799


Q ss_pred             EeecCCCCChHHHHHHHHHHH
Q 027593          151 EISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       151 ~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      .+||.+|.|+++++..|.+..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHH
Confidence            999999999999999987643

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=1.5e-11  Score=89.94  Aligned_cols=47  Identities=21%  Similarity=0.249  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |.++....|++++..+|+++++|||+++     +|+....+..+.++++..+
T Consensus       143 GG~~QRvaiAraL~~~P~lLllDEPt~~-----LD~~~~~~i~~~l~~l~~~  189 (240)
T d3dhwc1         143 GGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINRR  189 (240)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESGGGS-----SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhccCCCeEEecccccc-----CCHHHhhHHHHHHHHHHhc
Confidence            5566678999999999999999999999     9999999999999988654

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=2.3e-10  Score=81.82  Aligned_cols=50  Identities=16%  Similarity=0.150  Sum_probs=40.8

Q ss_pred             ecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +..++  .+.....|++++..+|+++++|||+++     +|+.......+.+.++..
T Consensus       124 ~~LSg--G~~qrv~ia~al~~~~~llllDEPt~g-----LD~~~~~~i~~~l~~~~~  173 (200)
T d1sgwa_         124 GELSQ--GTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEILK  173 (200)
T ss_dssp             GGSCH--HHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHH
T ss_pred             CcCCC--cHHHHHHHHHHHhcCCCEEEEcCcccc-----cCHHHHHHHHHHHHHHHh
Confidence            34444  445558899999999999999999999     999999888888877643

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.12  E-value=3.6e-11  Score=89.19  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=45.2

Q ss_pred             ecCCCCChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       153 s~~~~~~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +.++|..  .....|++++..+|+++++|||+++     +|+....++.+.++++..+..
T Consensus       148 ~~LSGG~--~QRv~iAraL~~~P~llilDEPT~g-----LD~~~~~~i~~ll~~l~~~g~  200 (258)
T d1b0ua_         148 VHLSGGQ--QQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEGK  200 (258)
T ss_dssp             GGSCHHH--HHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccHHH--HHHHHHHHHHhcCCCEEEecccccc-----CCHHHHHHHHHhhhhhcccCC
Confidence            4455554  5557899999999999999999999     999999999999999877653

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.00  E-value=1.8e-09  Score=82.66  Aligned_cols=100  Identities=9%  Similarity=0.025  Sum_probs=56.9

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHH--
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--  139 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~--  139 (221)
                      +.+.++.|.|.-...   ......+|..++|.........+.++.-+-       ..+-++|+||+|+.+........  
T Consensus       144 ~d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil-------E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         144 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhhhHh-------hhhheeeEeccccccchHHHHHHHH
Confidence            345566666532111   122345788888888876643332211111       23558999999986533222111  


Q ss_pred             HHHH----------hcCceEEEeecCCCCChHHHHHHHHHHH
Q 027593          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~l  171 (221)
                      ....          ....+++.+|+++|.|+++++.+|.+..
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            1111          1345799999999999999999997654

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=3.1e-11  Score=88.67  Aligned_cols=46  Identities=13%  Similarity=0.255  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+..+..|+|++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       142 GGq~QRvalARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  187 (241)
T d2pmka1         142 GGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKICK  187 (241)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhhhcccchhhhhCCccc-----cCHHHHHHHHHHHHHHhC
Confidence            5577779999999999999999999999     999999999999988754

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=6.2e-10  Score=84.55  Aligned_cols=85  Identities=15%  Similarity=0.011  Sum_probs=57.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--C---------------eEEEEEEEeCCCccc
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--C---------------GKIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~D~~g~~~   74 (221)
                      ..++|+++|.|+||||||+|+++... .+.....+++|..+....+.  .               ....+.+.|+||...
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~-~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSV-LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHST-TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC-CCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            45899999999999999999966432 22334556666555443331  1               124688999999664


Q ss_pred             ccccc-------cccccCccEEEEEEeCCC
Q 027593           75 FGGLR-------DGYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        75 ~~~~~-------~~~~~~~~~~i~v~d~~~   97 (221)
                      .....       ...++.+|+++.|+++.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            33222       222689999999999865

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.94  E-value=2.4e-10  Score=84.00  Aligned_cols=46  Identities=13%  Similarity=0.260  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+..+..|+|++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       142 GGqkQRv~iARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  187 (242)
T d1mv5a_         142 GGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLMK  187 (242)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecCCccc-----cCHHHHHHHHHHHHHHcC
Confidence            5567778999999999999999999999     999999999999988754

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=7.7e-11  Score=87.16  Aligned_cols=46  Identities=24%  Similarity=0.262  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+..+..|+|++..+|+++++|||+++     +|+.....+.+.++++..
T Consensus       154 GGqkQRvaiARal~~~p~ililDEpTs~-----LD~~~~~~i~~~l~~l~~  199 (251)
T d1jj7a_         154 GGQRQAVALARALIRKPCVLILDDATSA-----LDANSQLQVEQLLYESPE  199 (251)
T ss_dssp             HHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHTCGG
T ss_pred             hhHceEEEEeeccccCCcEEEecCcCcc-----cChhhHHHHHHHHHHHhh
Confidence            5567778999999999999999999999     999999999999887644

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.8e-10  Score=84.21  Aligned_cols=49  Identities=24%  Similarity=0.221  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhC-------CCCCccccCCCCCCcccccchHHHHHHHHHHHHhhCCCC
Q 027593          159 NFEKPFLYLARKLAG-------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~-------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      |.++....|++++.+       +|+++++|||+++     +|+.......+.++++..+..
T Consensus       128 gG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~g-----LD~~~~~~i~~~i~~l~~~g~  183 (231)
T d1l7vc_         128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALCQQGL  183 (231)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTT-----CCHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhCCC
Confidence            445555779999875       6689999999999     999999999999998876653

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.89  E-value=3e-10  Score=84.01  Aligned_cols=46  Identities=17%  Similarity=0.253  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-+.....|+|++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       155 GGqkQRvaiARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  200 (253)
T d3b60a1         155 GGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK  200 (253)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEecccccc-----CCHHHHHHHHHHHHHhcc
Confidence            4466678999999999999999999999     999999999999988754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.85  E-value=1.4e-09  Score=81.58  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=37.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEecCeEEEEEEEeCCCcc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~   73 (221)
                      ....++|+|+|.|+||||||+|++. +.......+.+|+|.+...+..+   -.+.++||||.-
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~-~~~~~~~~~~pG~Tr~~~~i~~~---~~~~l~DTPGi~  168 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLA-KKNIAKTGDRPGITTSQQWVKVG---KELELLDTPGIL  168 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHH-TSCCC------------CCEEET---TTEEEEECCCCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhh-ccceEEECCcccccccceEEECC---CCeEEecCCCcc
Confidence            4567999999999999999999954 55566778899988877665543   248899999964

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.81  E-value=1.9e-10  Score=85.01  Aligned_cols=46  Identities=20%  Similarity=0.294  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhhC
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |.+.....|+|++..+|+++++|||+++     +|+...+.+.+.++++..
T Consensus       157 gGq~QRi~iARal~~~p~ililDEpts~-----LD~~t~~~i~~~l~~l~~  202 (255)
T d2hyda1         157 GGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK  202 (255)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHhc
Confidence            4566678899999999999999999999     999999999999987754

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=2.7e-08  Score=75.38  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=42.5

Q ss_pred             EEEEEeCCCccccc-------------ccccccccCcc-EEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027593           63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        63 ~~~~~D~~g~~~~~-------------~~~~~~~~~~~-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D  128 (221)
                      .+.++|+||.....             .....|+...+ ++++|.++...........+...+...  ..++++|+||+|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D  203 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD  203 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence            37899999954321             11233455555 556677777665555545555544332  568999999999


Q ss_pred             CCcc
Q 027593          129 VKNR  132 (221)
Q Consensus       129 ~~~~  132 (221)
                      ..+.
T Consensus       204 ~~~~  207 (299)
T d2akab1         204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cccc
Confidence            8654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.78  E-value=4.5e-09  Score=78.96  Aligned_cols=81  Identities=17%  Similarity=0.044  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCcccCCceeEeeeEEEEec--C------------e---EEEEEEEeCCCcccc-
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--C------------G---KIRFYCWDTAGQEKF-   75 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~---~~~~~~~D~~g~~~~-   75 (221)
                      +||+++|.|+||||||+|++.....  .....+++|..+....+.  .            .   ...+.++|+||.... 
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            6999999999999999999775432  233344444444332221  1            1   135889999996432 


Q ss_pred             ---cccccc---cccCccEEEEEEeCC
Q 027593           76 ---GGLRDG---YYIHGQCAIIMFDVT   96 (221)
Q Consensus        76 ---~~~~~~---~~~~~~~~i~v~d~~   96 (221)
                         .++...   .++.+|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence               223333   377899999999874

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=5.8e-08  Score=72.63  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCcccccchHHHHHHHHH
Q 027593          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAE  203 (221)
Q Consensus       159 ~i~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~  203 (221)
                      |.+.....|++++..+|+++++|||+++     +|+.....+.+.
T Consensus       161 gGqkQRv~lARaL~~~p~illLDEPts~-----LD~~~~~~i~~~  200 (281)
T d1r0wa_         161 GGQRARISLARAVYKDADLYLLDSPFGY-----LDVFTEEQVFES  200 (281)
T ss_dssp             HHHHHHHHHHHHHHSCCSEEEEESCCCS-----SCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCccchhhcCcccc-----CCHHHHHHHHHH
Confidence            5567778999999999999999999999     999888777654

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.66  E-value=6.7e-08  Score=73.39  Aligned_cols=69  Identities=13%  Similarity=0.133  Sum_probs=41.3

Q ss_pred             EEEEEeCCCccccc-------------ccccccccCccEEEEE-EeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027593           63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQCAIIM-FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        63 ~~~~~D~~g~~~~~-------------~~~~~~~~~~~~~i~v-~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D  128 (221)
                      .+.++|+||.....             .....|+.+++.++++ .++...........+...+..  ....+++|+||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEeccc
Confidence            47799999954321             2334467778875555 455544444444444444422  2568999999999


Q ss_pred             CCccc
Q 027593          129 VKNRQ  133 (221)
Q Consensus       129 ~~~~~  133 (221)
                      .....
T Consensus       210 ~~~~~  214 (306)
T d1jwyb_         210 LMDKG  214 (306)
T ss_dssp             SSCSS
T ss_pred             cccch
Confidence            86543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.38  E-value=1.2e-07  Score=68.06  Aligned_cols=59  Identities=17%  Similarity=0.132  Sum_probs=33.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCCCCCc--c----cCCceeEeeeEEEEecCeEEEEEEEeCCCcccc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKK--Y----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~   75 (221)
                      -+.+++|++|||||||+|+++.......  .    .....+|....-+.+..+   -.++||||...+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~  160 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANL  160 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCccccc
Confidence            4679999999999999999654322211  1    111223333333444322   367899997543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.31  E-value=1.2e-06  Score=62.36  Aligned_cols=91  Identities=11%  Similarity=0.079  Sum_probs=52.5

Q ss_pred             EEEEEEeCCCccccccc------cccc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCccc
Q 027593           62 IRFYCWDTAGQEKFGGL------RDGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~------~~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~  133 (221)
                      ..+.++||+|...+...      ...+  ....+-.++|+++.....  .+..... ....  ..+--+++||.|...+ 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~-~~~~--~~~~~lI~TKlDet~~-  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASK-FNQA--SKIGTIIITKMDGTAK-  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHH-HHHH--CTTEEEEEECTTSCSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhh-hhcc--cCcceEEEecccCCCc-
Confidence            57899999996543321      1111  223467888888876532  2222222 2221  2344577999998643 


Q ss_pred             ccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593          134 VKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                       .-.........++|+.+++.  |++++
T Consensus       169 -~G~~l~~~~~~~lPi~~it~--Gq~v~  193 (211)
T d1j8yf2         169 -GGGALSAVAATGATIKFIGT--GEKID  193 (211)
T ss_dssp             -HHHHHHHHHTTTCCEEEEEC--SSSTT
T ss_pred             -ccHHHHHHHHHCcCEEEEeC--CCCcc
Confidence             23445667778888887773  55553

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.28  E-value=1.5e-07  Score=67.80  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~~   36 (221)
                      =+.+++|++|||||||+|+++..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            35689999999999999996643

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.24  E-value=1.1e-06  Score=62.60  Aligned_cols=93  Identities=12%  Similarity=-0.040  Sum_probs=51.3

Q ss_pred             EEEEEEEeCCCcccccccc----ccc---c-----cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027593           61 KIRFYCWDTAGQEKFGGLR----DGY---Y-----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~----~~~---~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D  128 (221)
                      +.++.++||+|...+....    ..+   .     ...+-.++|.++.....  .+.........   -.+.-+++||.|
T Consensus        93 ~~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~--~~~~~~~~~~~---~~~~~lI~TKlD  167 (213)
T d1vmaa2          93 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQN--GLVQAKIFKEA---VNVTGIILTKLD  167 (213)
T ss_dssp             TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHH--HHHHHHHHHHH---SCCCEEEEECGG
T ss_pred             CCCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCcc--hhhhhhhhccc---cCCceEEEeccc
Confidence            3568999999954332211    111   1     12466888999875522  11122222211   235567899999


Q ss_pred             CCcccccHHHHHHHHhcCceEEEeecCCCCChHH
Q 027593          129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~  162 (221)
                      ...+.  -.........+.|+.+++  +|+.+++
T Consensus       168 e~~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         168 GTAKG--GITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             GCSCT--THHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCcc--cHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            75332  234566667788887776  3555543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.19  E-value=4.2e-06  Score=62.17  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=66.4

Q ss_pred             cccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCC
Q 027593           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~  159 (221)
                      ...+..+|++++|.|+.++.+..+-  .+..+   ..++|.++|+||+|+.+.....+..+.....+...+.+|+..+.+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~---~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--MIEDI---LKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--HHHHH---CSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--HHHHH---HcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence            3457899999999999999887663  22222   347899999999999877666666666666778899999999998


Q ss_pred             hHHHHHHHHHHH
Q 027593          160 FEKPFLYLARKL  171 (221)
Q Consensus       160 i~~~~~~l~~~l  171 (221)
                      ...+...+...+
T Consensus        85 ~~~~~~~~~~~l   96 (273)
T d1puja_          85 LNQIVPASKEIL   96 (273)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             ccccchhhhhhh
Confidence            877666555443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=1.9e-06  Score=61.22  Aligned_cols=87  Identities=9%  Similarity=-0.060  Sum_probs=48.4

Q ss_pred             EEEEEEEeCCCcccccccc----ccc---c-----cCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027593           61 KIRFYCWDTAGQEKFGGLR----DGY---Y-----IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~----~~~---~-----~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D  128 (221)
                      +..+.++||+|...+....    ..+   .     ...+-.++|+|+.....-  +.........   -.+.-+++||.|
T Consensus        88 ~~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~--~~~~~~~~~~---~~~~~lI~TKlD  162 (207)
T d1okkd2          88 GYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNG--LEQAKKFHEA---VGLTGVIVTKLD  162 (207)
T ss_dssp             TCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHH--HHHHHHHHHH---HCCSEEEEECTT
T ss_pred             CCCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchH--HHHHHHhhhc---cCCceEEEeccC
Confidence            3578999999955433211    111   1     234678889998866321  1111111111   133357899999


Q ss_pred             CCcccccHHHHHHHHhcCceEEEeec
Q 027593          129 VKNRQVKAKQVTFHRKKNLQYYEISA  154 (221)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (221)
                      ...+.  -.........+.|+.+++.
T Consensus       163 et~~~--G~~l~~~~~~~~Pi~~i~~  186 (207)
T d1okkd2         163 GTAKG--GVLIPIVRTLKVPIKFVGV  186 (207)
T ss_dssp             SSCCC--TTHHHHHHHHCCCEEEEEC
T ss_pred             CCCCc--cHHHHHHHHHCCCEEEEeC
Confidence            75432  2344556677788777764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.10  E-value=7.3e-07  Score=61.74  Aligned_cols=21  Identities=48%  Similarity=0.868  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .||+|+|++|+|||||++.++
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~   21 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHH
Confidence            489999999999999999855

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=1e-05  Score=57.31  Aligned_cols=86  Identities=13%  Similarity=0.033  Sum_probs=49.2

Q ss_pred             EEEEEEEeCCCcccccccc----ccc--ccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccc
Q 027593           61 KIRFYCWDTAGQEKFGGLR----DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~----~~~--~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~  134 (221)
                      +.++.++||+|........    ..+  ..+.+-+++|.++.....-.   .....+.+.  -...-++++|.|...+  
T Consensus        92 ~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~---~~~~~f~~~--~~~~~~I~TKlDe~~~--  164 (207)
T d1ls1a2          92 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEAL---SVARAFDEK--VGVTGLVLTKLDGDAR--  164 (207)
T ss_dssp             TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHH---HHHHHHHHH--TCCCEEEEECGGGCSS--
T ss_pred             cCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHH---HHHHHHHhh--CCCCeeEEeecCcccc--
Confidence            3578999999955432211    111  23557888999987663322   222222221  1233478999997543  


Q ss_pred             cHHHHHHHHhcCceEEEee
Q 027593          135 KAKQVTFHRKKNLQYYEIS  153 (221)
Q Consensus       135 ~~~~~~~~~~~~~~~~~~s  153 (221)
                      .-.........+.|+.+++
T Consensus       165 ~G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         165 GGAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             CHHHHHHHHHHCCCEEEEC
T ss_pred             chHHHHHHHHHCCCEEEEe
Confidence            2334566667778776665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.93  E-value=1.9e-05  Score=56.37  Aligned_cols=84  Identities=15%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             cccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHH--hcCceEEEeecCCCC
Q 027593           82 YYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSNY  158 (221)
Q Consensus        82 ~~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~  158 (221)
                      ...+.|.+++|+++..+. +...+.+++.....  .+.+.++|+||+|+.+............  ..+.+.+.+|++++.
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~   84 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGM   84 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccch
Confidence            356889999999988753 33344555544433  3899999999999976443333222222  335789999999999


Q ss_pred             ChHHHHHHH
Q 027593          159 NFEKPFLYL  167 (221)
Q Consensus       159 ~i~~~~~~l  167 (221)
                      |++.+...+
T Consensus        85 g~~~L~~~l   93 (225)
T d1u0la2          85 GIEELKEYL   93 (225)
T ss_dssp             THHHHHHHH
T ss_pred             hHhhHHHHh
Confidence            998866544

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.89  E-value=3.7e-06  Score=56.47  Aligned_cols=23  Identities=22%  Similarity=0.589  Sum_probs=19.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      |+++ |++.|++|||||||++++.
T Consensus         1 Mkkl-Iii~G~pGsGKTTla~~L~   23 (152)
T d1ly1a_           1 MKKI-ILTIGCPGSGKSTWAREFI   23 (152)
T ss_dssp             CCEE-EEEECCTTSSHHHHHHHHH
T ss_pred             CCEE-EEEECCCCCCHHHHHHHHH
Confidence            4555 7899999999999999865

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.85  E-value=3.5e-06  Score=58.36  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =+|+|.|++|||||||+++|.
T Consensus         8 K~I~i~G~~GsGKTTla~~La   28 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLA   28 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999844

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=5.1e-06  Score=56.73  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -|+|+|++|||||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.80  E-value=6.5e-06  Score=56.44  Aligned_cols=23  Identities=30%  Similarity=0.494  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      .+..+|+|+|++||||||+.+.|
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~L   25 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMI   25 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHH
Confidence            45689999999999999999974

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.78  E-value=5.6e-06  Score=56.62  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+|+|+|++||||||+.+.+.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La   25 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELA   25 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999843

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=5.1e-06  Score=57.67  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027593           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~   35 (221)
                      |+|+||+|||||||+++++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999999664

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=0.00029  Score=50.25  Aligned_cols=22  Identities=32%  Similarity=0.454  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~   36 (221)
                      =++|.|.-|||||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            4678999999999999998764

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.68  E-value=1e-05  Score=55.26  Aligned_cols=19  Identities=42%  Similarity=0.641  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      |+|.|++||||||+.+++.
T Consensus         5 I~i~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999999854

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.64  E-value=1.4e-05  Score=55.79  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.++|+++|+|||||||+.+.|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            45799999999999999999743

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.60  E-value=1.7e-05  Score=54.86  Aligned_cols=20  Identities=35%  Similarity=0.547  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~   33 (221)
                      .+|+|+|+|||||||+.+.+
T Consensus         1 m~I~i~G~pGSGKsT~a~~L   20 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKI   20 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            37999999999999999974

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=2e-05  Score=53.75  Aligned_cols=19  Identities=32%  Similarity=0.534  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++|+|.+|||||||+++++
T Consensus         4 i~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5799999999999999965

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.56  E-value=2.8e-05  Score=54.26  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=21.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +-+-++|+|+|+|||||||+.+.+.
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La   27 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRIT   27 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHH
Confidence            3456899999999999999999854

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.54  E-value=3.8e-05  Score=52.74  Aligned_cols=26  Identities=38%  Similarity=0.570  Sum_probs=21.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ......=|+++|++||||||+++++.
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            33445678899999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.8e-05  Score=55.18  Aligned_cols=28  Identities=21%  Similarity=0.260  Sum_probs=24.1

Q ss_pred             CCCccCCceEEEEEcCCCCcHHHHHHHH
Q 027593            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+.+++...|.++|++||||||+.+.|
T Consensus        12 ~~~~~~~g~vI~L~G~pGSGKTTiAk~L   39 (195)
T d1x6va3          12 GTRGGFRGCTVWLTGLSGAGKTTVSMAL   39 (195)
T ss_dssp             SSSCSCCCEEEEEESSCHHHHHHHHHHH
T ss_pred             hhhcCCCCeEEEEECCCCCCHHHHHHHH
Confidence            4567777888999999999999999974

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.54  E-value=2.3e-05  Score=54.19  Aligned_cols=21  Identities=24%  Similarity=0.487  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|+|++||||||+.+.+.
T Consensus         1 m~I~i~G~pGsGKsT~a~~La   21 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLA   21 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999844

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.52  E-value=1.9e-05  Score=55.05  Aligned_cols=21  Identities=29%  Similarity=0.344  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|+|++||||||+++.|.
T Consensus         4 m~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999743

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=5.5e-05  Score=55.98  Aligned_cols=63  Identities=19%  Similarity=0.121  Sum_probs=39.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCCCCcc-----cCCceeEeeeEEEEecCeEEEEEEEeCCCccc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~   74 (221)
                      .+-.=|+|+|+.++|||+|+|++++....-..     ..|.|+-...... .++....+.++||.|...
T Consensus        30 ~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          30 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            35567899999999999999996654431111     1233432211111 234567889999999654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.49  E-value=2.8e-05  Score=53.85  Aligned_cols=21  Identities=33%  Similarity=0.552  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|+|+|||||||+.+.|.
T Consensus         1 M~I~i~G~pGSGKsT~a~~La   21 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999744

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.5e-05  Score=53.77  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|.|.|++|+|||||+..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999865

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.48  E-value=3.6e-05  Score=53.79  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..|+|+|++||||||+++++.
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La   27 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999854

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=7.6e-06  Score=56.88  Aligned_cols=19  Identities=32%  Similarity=0.483  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      |+|+||+|||||||++.+.
T Consensus         5 ivl~GpsG~GK~tl~~~L~   23 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLR   23 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7899999999999999865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=3.3e-05  Score=53.37  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+|+|+|++||||||+.+.+.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999743

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=2.8e-05  Score=52.40  Aligned_cols=19  Identities=32%  Similarity=0.585  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      .|.|+|++||||||+.+.+
T Consensus         4 ~I~l~G~~GsGKSTvak~L   22 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQL   22 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            5899999999999999974

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=3e-05  Score=53.48  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|+|++||||||..+.+.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999998743

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.46  E-value=1.2e-05  Score=56.08  Aligned_cols=20  Identities=45%  Similarity=0.813  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027593           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~   35 (221)
                      |+|+||+|||||||+++++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.45  E-value=3.7e-05  Score=54.88  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      |+.+.|+|-||+||||||+.+.+.
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La   24 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIA   24 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            677999999999999999999744

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.42  E-value=5.7e-05  Score=52.53  Aligned_cols=24  Identities=29%  Similarity=0.235  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...+-|+|.|++|||||||.+.+.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            346779999999999999999854

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.40  E-value=5.3e-05  Score=54.23  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=55.5

Q ss_pred             ccCccEEEEEEeCCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHH----HHHHHhcCceEEEeecCCC
Q 027593           83 YIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ----VTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        83 ~~~~~~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~----~~~~~~~~~~~~~~s~~~~  157 (221)
                      ..+.|.+++|+++.++. +...+.+++.....  .+.+.++|+||+|+.......+.    .+.....+.+++.+|+.++
T Consensus         8 vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~   85 (231)
T d1t9ha2           8 ICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQ   85 (231)
T ss_dssp             EECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHH
T ss_pred             ccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCCh
Confidence            56889999999988763 33444555544433  48899999999999764332222    2334556889999999998


Q ss_pred             CChHHHH
Q 027593          158 YNFEKPF  164 (221)
Q Consensus       158 ~~i~~~~  164 (221)
                      .|++++.
T Consensus        86 ~gl~~L~   92 (231)
T d1t9ha2          86 DSLADII   92 (231)
T ss_dssp             TTCTTTG
T ss_pred             hHHHHHH
Confidence            8886644

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.38  E-value=6.1e-05  Score=51.48  Aligned_cols=23  Identities=17%  Similarity=0.364  Sum_probs=19.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ++.+.|.++|++||||||+.+.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~L   26 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARAL   26 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHH
Confidence            45688999999999999998873

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.6e-05  Score=52.73  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.|+|+|++||||||..+.+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La   22 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIV   22 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999743

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.36  E-value=4.1e-05  Score=52.13  Aligned_cols=20  Identities=45%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~   33 (221)
                      .+|+++|++||||||+.+.+
T Consensus         2 p~IvliG~~G~GKSTig~~L   21 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRL   21 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            46899999999999998873

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.35  E-value=4.7e-05  Score=53.68  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-|+++|.|||||||+.+++.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            348999999999999999854

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.33  E-value=5.4e-05  Score=52.13  Aligned_cols=18  Identities=33%  Similarity=0.434  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~   33 (221)
                      |+|.|++||||||+++.+
T Consensus         4 I~i~G~~GsGKsT~~~~L   21 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLA   21 (190)
T ss_dssp             EEEECCTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999974

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.32  E-value=5.2e-05  Score=51.42  Aligned_cols=19  Identities=32%  Similarity=0.595  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      +|+++|++||||||+.+.+
T Consensus         2 ~I~liG~~GsGKsTi~k~L   20 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARAL   20 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHH
Confidence            4899999999999998873

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.27  E-value=6.5e-05  Score=51.24  Aligned_cols=18  Identities=33%  Similarity=0.643  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~   33 (221)
                      |+|.|++||||||+.+.+
T Consensus         7 I~l~G~~GsGKSTia~~L   24 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEAL   24 (176)
T ss_dssp             EEEEECTTSCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999974

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=7e-05  Score=50.87  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=17.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -=++|+|++||||||+.+.+.
T Consensus         7 ~iivl~G~~GsGKsT~a~~La   27 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVA   27 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            346679999999999999843

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=9e-05  Score=51.77  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=18.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .--|+|+|++||||||+.+.+.
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La   29 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLV   29 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3458999999999999999854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.20  E-value=9.6e-05  Score=51.51  Aligned_cols=19  Identities=37%  Similarity=0.774  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      |+|+||+|||||||++.+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~   21 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLF   21 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999999854

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00011  Score=51.93  Aligned_cols=21  Identities=19%  Similarity=0.501  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -|+|+||+|||||||+++++.
T Consensus         4 livi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998664

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.14  E-value=0.00011  Score=50.21  Aligned_cols=18  Identities=33%  Similarity=0.527  Sum_probs=16.3

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~   33 (221)
                      |.++|++||||||+.+.+
T Consensus         5 Iil~G~~GsGKSTia~~L   22 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGREL   22 (170)
T ss_dssp             EEEESCTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            778999999999999974

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.12  E-value=0.00012  Score=51.12  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -|.|+|+|||||||+.+++.
T Consensus        10 iI~l~G~pGSGKsT~a~~La   29 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIV   29 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48899999999999999854

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.09  E-value=0.00017  Score=48.97  Aligned_cols=20  Identities=20%  Similarity=0.414  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      =|+|.|++||||||+.+.|.
T Consensus         5 iI~l~G~~GsGKsTva~~L~   24 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQ   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            37778999999999999844

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.05  E-value=0.00022  Score=52.06  Aligned_cols=21  Identities=24%  Similarity=0.442  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      --|++.||||||||||++.+.
T Consensus        33 ~~ilL~GpPGtGKT~la~~la   53 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIF   53 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            349999999999999999844

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00018  Score=50.82  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+-|+|.|++|||||||.+.+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3779999999999999999743

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.96  E-value=0.00022  Score=51.26  Aligned_cols=22  Identities=27%  Similarity=0.332  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...+++.||||+||||+++.+.
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3468999999999999999854

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.95  E-value=0.00022  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=19.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.+++.||||+||||+++.+.
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la   56 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIA   56 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999754

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.94  E-value=0.00021  Score=49.25  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=16.0

Q ss_pred             EE-EEEcCCCCcHHHHHHHH
Q 027593           15 KL-VIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i-~v~G~~g~GKStli~~~   33 (221)
                      || +|.|.+||||||+++.+
T Consensus         2 kiivi~G~~GsGKTT~~~~L   21 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKV   21 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            44 56799999999999974

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.89  E-value=0.00032  Score=48.60  Aligned_cols=23  Identities=26%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .++-|+|.|.+||||||+++.|.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.88  E-value=0.00027  Score=49.15  Aligned_cols=24  Identities=33%  Similarity=0.648  Sum_probs=20.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+.+-|+|-|..||||||+++.+
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L   29 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHF   29 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHH
Confidence            455688999999999999999973

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.80  E-value=0.00041  Score=50.24  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.|++.||+|+|||++++.+.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHh
Confidence            34579999999999999999843

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.80  E-value=0.00029  Score=53.21  Aligned_cols=21  Identities=33%  Similarity=0.727  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -+|+|.|++|||||||++.++
T Consensus       167 ~nili~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHG
T ss_pred             CCEEEEeeccccchHHHHHHh
Confidence            359999999999999999965

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.76  E-value=0.00052  Score=48.38  Aligned_cols=26  Identities=15%  Similarity=0.233  Sum_probs=21.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ...+..-|.+.|.+|||||||.+.|.
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34567789999999999999999853

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.75  E-value=0.00043  Score=49.42  Aligned_cols=21  Identities=33%  Similarity=0.341  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..+++.||+|+||||+++.+.
T Consensus        46 ~~lll~Gp~G~GKTtla~~ia   66 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALA   66 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            368999999999999999754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.73  E-value=0.00038  Score=52.23  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +.-.++++||||||||.|.+++-
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA   70 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLA   70 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHh
Confidence            44578999999999999999843

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00058  Score=51.00  Aligned_cols=24  Identities=21%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ....+-|+|.|++||||||+.+.+
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L  100 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVL  100 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHH
Confidence            456799999999999999998874

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00042  Score=48.97  Aligned_cols=20  Identities=35%  Similarity=0.484  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      =|+|.||+||||||+.+.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La   24 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMA   24 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47888999999999999743

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.70  E-value=0.00062  Score=49.44  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..-.++|.|++|+||||+++.+.
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~   64 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLW   64 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999854

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00064  Score=49.10  Aligned_cols=22  Identities=27%  Similarity=0.211  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.+++.||+|+||||+++.+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la   73 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVA   73 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            3479999999999999999854

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0008  Score=47.36  Aligned_cols=91  Identities=11%  Similarity=-0.054  Sum_probs=50.4

Q ss_pred             EEEEEEeCCCccccccc----cccc---cc-----CccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCC
Q 027593           62 IRFYCWDTAGQEKFGGL----RDGY---YI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~----~~~~---~~-----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~  129 (221)
                      ..+.++||+|.......    ...+   ..     ..+-.++|.|+.....-.  .........   -.+.-+++||.|.
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~--~~~~~~~~~---~~~~~lIlTKlDe  166 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEA---VGLTGITLTKLDG  166 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHH--HHHHHHHHH---SCCCEEEEECCTT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchH--HHHhhhhhc---cCCceEEEeecCC
Confidence            46899999994322111    1111   11     246788899987653211  111111111   2345678999998


Q ss_pred             CcccccHHHHHHHHhcCceEEEeecCCCCChH
Q 027593          130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~  161 (221)
                      ..+.  -.........+.|+.+++  .|++++
T Consensus       167 ~~~~--G~~l~~~~~~~~Pi~~i~--~Gq~v~  194 (211)
T d2qy9a2         167 TAKG--GVIFSVADQFGIPIRYIG--VGERIE  194 (211)
T ss_dssp             CTTT--THHHHHHHHHCCCEEEEE--CSSSGG
T ss_pred             CCCc--cHHHHHHHHHCCCEEEEe--CCCCcc
Confidence            5432  334556677788887776  455553

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00059  Score=47.33  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=19.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+=+++++|++|+|||+++..+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHH
Confidence            34579999999999999998744

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.00046  Score=50.26  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|+|.|++|+|||||++++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            368899999999999999865

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0009  Score=49.35  Aligned_cols=24  Identities=17%  Similarity=0.211  Sum_probs=20.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+.+=|+|.|++|||||||...+
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHH
Confidence            445689999999999999998864

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0007  Score=49.52  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+=+++++|++|+|||+++..+.
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHH
Confidence            34589999999999999998854

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.53  E-value=0.00058  Score=49.92  Aligned_cols=19  Identities=37%  Similarity=0.447  Sum_probs=16.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      +.+.|++|+|||++++.+.
T Consensus        49 l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHH
Confidence            4557999999999999854

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.00081  Score=47.27  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      |-|+|.|..||||||+++.|.
T Consensus         4 ~iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHH
Confidence            669999999999999999643

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.52  E-value=0.00067  Score=49.14  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .|++.||+|+|||+|++++.
T Consensus        44 giLl~GppGtGKT~la~aia   63 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVA   63 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHH
Confidence            59999999999999999854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.50  E-value=0.00071  Score=48.29  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      .+++.||+|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998653

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.00016  Score=50.41  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      .+|+|++||||||++.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999964

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.00088  Score=48.73  Aligned_cols=21  Identities=38%  Similarity=0.490  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+++.||+|+|||++++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            359999999999999999854

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.39  E-value=0.00089  Score=46.79  Aligned_cols=19  Identities=37%  Similarity=0.587  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      -|+|-|..||||||+++.|
T Consensus         2 lI~ieG~dGsGKST~~~~L   20 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKL   20 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999974

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.36  E-value=0.0011  Score=46.39  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~   33 (221)
                      +-|+|.|..||||||+++.|
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            67999999999999999964

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.35  E-value=0.00095  Score=48.61  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.|++.||+|+|||++++++.
T Consensus        39 ~giLL~GppGtGKT~l~~ala   59 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVA   59 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHH
Confidence            459999999999999999854

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00074  Score=48.68  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ..+++.||+|+||||+++.+..
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.001  Score=47.19  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      ++++.||+|+||||+++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            58999999999999998744

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.32  E-value=0.00094  Score=47.42  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      ++++.||+|+||||++..+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            589999999999999998653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0021  Score=44.87  Aligned_cols=24  Identities=21%  Similarity=0.097  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      -+.|.|++|+|||+|+.++..+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999998765443

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.27  E-value=0.0022  Score=42.74  Aligned_cols=28  Identities=32%  Similarity=0.390  Sum_probs=22.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      .+..-|++-|+=|||||||++.++.+.-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3456799999999999999998775443

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.27  E-value=0.00065  Score=50.53  Aligned_cols=32  Identities=6%  Similarity=0.041  Sum_probs=26.8

Q ss_pred             hCCCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          172 AGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       172 ~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      ...+.+..+|||..+     +++...+.+...+++..
T Consensus       239 ~~~~~~~~iDEpe~~-----Lhp~~~~~l~~~l~~~~  270 (308)
T d1e69a_         239 IKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENS  270 (308)
T ss_dssp             TSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHT
T ss_pred             hccCchhhhhhcccc-----CCHHHHHHHHHHHHHhc
Confidence            345567888999999     99999999999998775

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.11  E-value=0.00082  Score=49.57  Aligned_cols=21  Identities=19%  Similarity=0.305  Sum_probs=15.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      .=|+|.|.+||||||+.+.|.
T Consensus         5 pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHH
Confidence            359999999999999998743

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.09  E-value=0.0021  Score=50.47  Aligned_cols=24  Identities=25%  Similarity=0.556  Sum_probs=20.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      +..+=+|+++||+|||||-|.+++
T Consensus        46 ei~ksNILliGPTGvGKTlLAr~L   69 (443)
T d1g41a_          46 EVTPKNILMIGPTGVGKTEIARRL   69 (443)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHH
T ss_pred             ccccccEEEECCCCCCHHHHHHHH
Confidence            334448999999999999999984

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.04  E-value=0.0022  Score=43.67  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      ...--|++.|++|+||||+.-.++.
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~~   36 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELVQ   36 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence            3445689999999999999988664

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0015  Score=47.67  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .-.|++.|++|+|||+|++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala   62 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIA   62 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHH
Confidence            3469999999999999999854

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.0019  Score=45.21  Aligned_cols=19  Identities=42%  Similarity=0.464  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      |+|-|..||||||+++.+.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999743

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.93  E-value=0.0021  Score=47.24  Aligned_cols=22  Identities=36%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ..-|+|.|++|+|||||+..+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3568999999999999998854

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.92  E-value=0.002  Score=45.88  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~   37 (221)
                      -+.|.|++|+|||+|+.++..+.
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999876443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.92  E-value=0.0025  Score=43.36  Aligned_cols=26  Identities=15%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .....-|++.|++|+||||+...++.
T Consensus        12 ~~~g~gvli~G~sG~GKS~lal~l~~   37 (177)
T d1knxa2          12 EVFGVGVLLTGRSGIGKSECALDLIN   37 (177)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34456689999999999999988663

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0021  Score=45.12  Aligned_cols=19  Identities=26%  Similarity=0.389  Sum_probs=16.4

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      =|+|-|+.||||||+++.+
T Consensus         5 lI~ieG~dGsGKsT~~~~L   23 (209)
T d1nn5a_           5 LIVLEGVDRAGKSTQSRKL   23 (209)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            3788899999999988873

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0021  Score=49.74  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             CCCCccccCCCCCCcccccchHHHHHHHHHHHHhh
Q 027593          174 DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       174 ~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      ..+++++|||..+     +|+.....+...+.++.
T Consensus       354 ~~pililDE~d~~-----Ld~~~~~~~~~~l~~~~  383 (427)
T d1w1wa_         354 PSPFFVLDEVDAA-----LDITNVQRIAAYIRRHR  383 (427)
T ss_dssp             CCSEEEESSTTTT-----CCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHh
Confidence            3447888999999     99999999999997764

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.80  E-value=0.0011  Score=49.99  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      +|+++|++|+|||+|++++-
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999999853

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0016  Score=46.45  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~~   38 (221)
                      .|+|-|+.||||||+++. +...+
T Consensus         4 ~I~ieG~dGsGKST~~~~-L~~~l   26 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNI-LKQLC   26 (241)
T ss_dssp             EEEEECSTTSSHHHHHTT-TGGGC
T ss_pred             EEEEECCCCCCHHHHHHH-HHHHH
Confidence            589999999999999996 54444

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.77  E-value=0.0046  Score=44.20  Aligned_cols=23  Identities=22%  Similarity=0.239  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~   37 (221)
                      -+.|.|++|+|||||.-+++.+.
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            47899999999999999876544

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.72  E-value=0.003  Score=48.27  Aligned_cols=24  Identities=21%  Similarity=0.511  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+.-+++++||+|||||-|.+++
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~L   88 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTL   88 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHH
Confidence            456678999999999999999984

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.64  E-value=0.0037  Score=42.23  Aligned_cols=28  Identities=29%  Similarity=0.430  Sum_probs=22.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcC
Q 027593            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus         9 ~~~~~~~i~v~G~~g~GKStli~~~~~~   36 (221)
                      ......-|++.|++|+||||+.-.++..
T Consensus        11 v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          11 VDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3445567999999999999998876643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.63  E-value=0.0031  Score=48.11  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      -.+++.||||+|||++.+.+.
T Consensus       155 ~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         155 RYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999844

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.005  Score=46.01  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ..+.-.++++||+|+|||.|.+.+
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~l   72 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQL   72 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHH
Confidence            345557999999999999999983

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.48  E-value=0.0038  Score=44.46  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~~   36 (221)
                      .--+.|.|++|+|||+|+.++..+
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHH
Confidence            345789999999999999987654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.44  E-value=0.0039  Score=48.28  Aligned_cols=21  Identities=29%  Similarity=0.506  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -|+|.|+.||||||++..++.
T Consensus       160 liLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhh
Confidence            389999999999999999765

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0027  Score=48.87  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=17.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHH
Q 027593           12 PSFKLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~   32 (221)
                      .+=+++++|++|||||+++..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~   62 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEG   62 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHH
Confidence            345679999999999999864

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0085  Score=42.68  Aligned_cols=22  Identities=23%  Similarity=0.135  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~   36 (221)
                      -+.|.|++|+|||+|..+++.+
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5789999999999999987653

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.30  E-value=0.0031  Score=47.45  Aligned_cols=25  Identities=28%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .|..++|.|=|.-||||||+++.+.
T Consensus         2 ~m~~lrI~IEG~iGsGKSTl~~~L~   26 (331)
T d1osna_           2 KMGVLRIYLDGAYGIGKTTAAEEFL   26 (331)
T ss_dssp             CEEEEEEEEEESSSSCTTHHHHHHH
T ss_pred             CccceEEEEECCCCCCHHHHHHHHH
Confidence            4677999999999999999999844

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.27  E-value=0.0047  Score=43.99  Aligned_cols=20  Identities=45%  Similarity=0.577  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -|+|=|..||||||+++.+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48899999999999999743

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.16  E-value=0.0057  Score=43.58  Aligned_cols=19  Identities=21%  Similarity=0.195  Sum_probs=17.3

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~   33 (221)
                      -|+|.|..||||||+.+.|
T Consensus         3 iIgiTG~igSGKsTva~~l   21 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFI   21 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            4899999999999999965

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0062  Score=42.78  Aligned_cols=18  Identities=39%  Similarity=0.364  Sum_probs=16.5

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~   33 (221)
                      |+|-|..||||||+++.+
T Consensus         6 I~iEG~DGsGKST~~~~L   23 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNIL   23 (214)
T ss_dssp             EEEEESTTSSHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHH
Confidence            889999999999999973

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.99  E-value=0.0064  Score=43.14  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCC
Q 027593           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~~~   37 (221)
                      -+.|.|++|+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999876543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.94  E-value=0.0074  Score=45.04  Aligned_cols=19  Identities=32%  Similarity=0.616  Sum_probs=16.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      +++.|+||+|||.|.+.+-
T Consensus       126 ~l~~G~pG~GKT~la~ala  144 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALG  144 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            5567999999999999843

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0089  Score=41.69  Aligned_cols=20  Identities=20%  Similarity=0.250  Sum_probs=17.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -+++.|++|+||||++..+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a   45 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALS   45 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            48999999999999999744

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0088  Score=42.64  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      .+++.|++|+||||+++.+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            37899999999999998754

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.69  E-value=0.0086  Score=42.12  Aligned_cols=23  Identities=35%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~~   35 (221)
                      .--+.|.|++|+|||+|+..++.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            34578899999999999877553

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.66  E-value=0.0097  Score=41.73  Aligned_cols=19  Identities=37%  Similarity=0.531  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      +.+.|++|+|||-|++++.
T Consensus        39 l~l~G~~G~GKTHLl~A~~   57 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAG   57 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            7899999999999999854

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.0083  Score=46.60  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      -+++|+|.+|+|||++++.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4699999999999999887653

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.56  E-value=0.0089  Score=41.30  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027593           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +=.+++.||+++|||+++..++
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~   74 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFI   74 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            4578999999999999998755

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.55  E-value=0.0068  Score=44.60  Aligned_cols=16  Identities=25%  Similarity=0.607  Sum_probs=13.8

Q ss_pred             EEEEEcCCCCcHHHHH
Q 027593           15 KLVIVGDGGTGKTTFV   30 (221)
Q Consensus        15 ~i~v~G~~g~GKStli   30 (221)
                      .++|+|++||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEeeCCccHHHHH
Confidence            4789999999999764

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=94.39  E-value=0.011  Score=44.18  Aligned_cols=21  Identities=33%  Similarity=0.396  Sum_probs=18.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 027593           13 SFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        13 ~~~i~v~G~~g~GKStli~~~   33 (221)
                      -++|.|=|.-||||||+++.+
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~L   24 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLL   24 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHH
T ss_pred             ceEEEEECCcCCCHHHHHHHH
Confidence            357999999999999999974

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.36  E-value=0.012  Score=42.72  Aligned_cols=20  Identities=30%  Similarity=0.692  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027593           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~   35 (221)
                      ++|.|++|+|||||+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999888653

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.35  E-value=0.014  Score=43.87  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      +-++|.|=|.-|+||||+++.+.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~   27 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMA   27 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHH
Confidence            35799999999999999999743

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.24  E-value=0.0096  Score=44.12  Aligned_cols=16  Identities=38%  Similarity=0.708  Sum_probs=13.9

Q ss_pred             EEEEEcCCCCcHHHHH
Q 027593           15 KLVIVGDGGTGKTTFV   30 (221)
Q Consensus        15 ~i~v~G~~g~GKStli   30 (221)
                      .++|.|++||||||.+
T Consensus        26 ~~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVL   41 (318)
T ss_dssp             CEEEEECTTSCHHHHH
T ss_pred             CEEEEecCCccHHHHH
Confidence            4889999999999764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.018  Score=42.16  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =|++|+|++|+|||+|+..+..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            3799999999999999987553

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.71  E-value=0.018  Score=41.63  Aligned_cols=19  Identities=26%  Similarity=0.431  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++|.|++|+|||||+-.+.
T Consensus        32 ~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            5689999999999987754

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.64  E-value=0.027  Score=35.34  Aligned_cols=25  Identities=12%  Similarity=0.122  Sum_probs=21.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.-+.|.+.|..|+|||||.+.+.
T Consensus         3 ~kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           3 PKQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             CccceEEEEeCCCCCCHHHHHHHHH
Confidence            3456999999999999999999854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.02  Score=43.42  Aligned_cols=18  Identities=56%  Similarity=0.643  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHH
Q 027593           15 KLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~   32 (221)
                      -++|.|++|+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            478899999999998754

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.61  E-value=0.027  Score=41.88  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=18.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~   33 (221)
                      .+.-.++++||+|+|||.+.+.+
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~l   73 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTL   73 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHH
T ss_pred             CCceEEEEECCCcchHHHHHHHH
Confidence            34446789999999999999973

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.38  E-value=0.03  Score=40.59  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027593           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      .+.-.+.+.|++++|||+|++.+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHH
Confidence            345678999999999999999854

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.30  E-value=0.025  Score=40.14  Aligned_cols=19  Identities=32%  Similarity=0.632  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++|.|++.+||||+++.+-
T Consensus        44 ~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEeccCchhhHHHHHHHH
Confidence            6899999999999999843

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.21  E-value=0.021  Score=41.20  Aligned_cols=86  Identities=13%  Similarity=0.089  Sum_probs=44.0

Q ss_pred             EEEEEEeCCCccccccccc-ccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcC--CCC-EEEEEeCCCCCcccccHH
Q 027593           62 IRFYCWDTAGQEKFGGLRD-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP-IVLCGNKVDVKNRQVKAK  137 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~-~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p-~i~v~nk~D~~~~~~~~~  137 (221)
                      ..+.++|+|+......... .....+|.++++... +..++.........+.....  +.+ .-++.|+.+.....  ..
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~--~~  192 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY--EL  192 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH--HH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc--ch
Confidence            4578889876443222211 122456777777665 45555555555544544332  222 23778987765432  11


Q ss_pred             HHHHHHhcCceEE
Q 027593          138 QVTFHRKKNLQYY  150 (221)
Q Consensus       138 ~~~~~~~~~~~~~  150 (221)
                      ...+....+.+++
T Consensus       193 ~~~~~~~~~~~~~  205 (269)
T d1cp2a_         193 LDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHTCCEE
T ss_pred             hhhhHhhcCCeEE
Confidence            2234444555443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.10  E-value=0.028  Score=39.62  Aligned_cols=19  Identities=32%  Similarity=0.637  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027593           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~   34 (221)
                      ++|.|++.+||||+++.+.
T Consensus        38 ~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhH
Confidence            7899999999999999843

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.61  E-value=0.036  Score=40.01  Aligned_cols=21  Identities=29%  Similarity=0.403  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      =+.|.|++|+|||||+-++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            467999999999999887553

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.74  E-value=0.056  Score=39.17  Aligned_cols=21  Identities=29%  Similarity=0.591  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      |++++|.+|+|||+|+..+..
T Consensus        70 r~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHH
Confidence            799999999999999887653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.54  E-value=0.055  Score=38.60  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=18.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHH
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~   33 (221)
                      ....|+|.|++|+||+.+.+.+
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~i   43 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLI   43 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHH
Confidence            3456999999999999999873

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.42  E-value=0.067  Score=38.89  Aligned_cols=68  Identities=13%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             EEEEEEeCCCccccccccccc-ccCccEEEEEEeCCChhhhccHHHHHHHHHhhc--CCCCE-EEEEeCCCCC
Q 027593           62 IRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVK  130 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~-~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-i~v~nk~D~~  130 (221)
                      +.+.++|+|+..........+ ...++.++++.. .+..+...+......+....  .+.++ .++.|+.+..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~-~~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~  190 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCS-GEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTD  190 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEEC-SSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCT
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccc-hhHHHHHHHHHHHHHHHhhhhcccccccceeehhhcch
Confidence            567788887654322222221 124566655544 34445554555555444432  23343 3778987654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.38  E-value=0.057  Score=39.75  Aligned_cols=15  Identities=53%  Similarity=0.722  Sum_probs=13.2

Q ss_pred             EEEcCCCCcHHHHHH
Q 027593           17 VIVGDGGTGKTTFVK   31 (221)
Q Consensus        17 ~v~G~~g~GKStli~   31 (221)
                      +++|.+|+|||||-.
T Consensus        18 lfFGLSGTGKTTLs~   32 (313)
T d2olra1          18 VFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEECSTTSSHHHHHC
T ss_pred             EEEccCCCCccccee
Confidence            699999999999754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.99  E-value=0.06  Score=39.75  Aligned_cols=16  Identities=50%  Similarity=0.652  Sum_probs=13.7

Q ss_pred             EEEEcCCCCcHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVK   31 (221)
Q Consensus        16 i~v~G~~g~GKStli~   31 (221)
                      -++.|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            4899999999999654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.55  E-value=0.074  Score=39.30  Aligned_cols=16  Identities=50%  Similarity=0.640  Sum_probs=13.8

Q ss_pred             EEEEcCCCCcHHHHHH
Q 027593           16 LVIVGDGGTGKTTFVK   31 (221)
Q Consensus        16 i~v~G~~g~GKStli~   31 (221)
                      -+++|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4699999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=89.06  E-value=0.12  Score=37.33  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027593           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~~   35 (221)
                      -+.+.|++++|||+|+..+..
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            467899999999999987553

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.92  E-value=0.09  Score=33.39  Aligned_cols=21  Identities=29%  Similarity=0.442  Sum_probs=16.1

Q ss_pred             eEE-EEEcCCCCcHHHHHHHHh
Q 027593           14 FKL-VIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i-~v~G~~g~GKStli~~~~   34 (221)
                      +++ .|.++.|+|||+++-.++
T Consensus         8 ~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           8 FQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             CEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHH
Confidence            444 679999999999876544

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.82  E-value=0.13  Score=37.07  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=16.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027593           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~g~GKStli~~~~   34 (221)
                      -+.+.|++|+|||||+-.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            46789999999999987644

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.44  E-value=0.19  Score=34.35  Aligned_cols=23  Identities=9%  Similarity=0.034  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027593           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~g~GKStli~~~~   34 (221)
                      ....+++.|++|+|||++...+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~   36 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELP   36 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHH
Confidence            45689999999999999998744

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.23  E-value=0.11  Score=37.85  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027593           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~~   35 (221)
                      =|++++|.+|+|||+|+..+..
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            3789999999999999876553

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.88  E-value=0.13  Score=35.22  Aligned_cols=18  Identities=22%  Similarity=0.324  Sum_probs=15.4

Q ss_pred             EEEEEcCC-CCcHHHHHHH
Q 027593           15 KLVIVGDG-GTGKTTFVKR   32 (221)
Q Consensus        15 ~i~v~G~~-g~GKStli~~   32 (221)
                      |+.|.|-. ||||||+.-.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~   21 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCA   21 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHH
Confidence            67899996 9999998665

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.68  E-value=0.16  Score=36.37  Aligned_cols=19  Identities=42%  Similarity=0.782  Sum_probs=14.0

Q ss_pred             eEE-EEEcCCCCcHHHHHHH
Q 027593           14 FKL-VIVGDGGTGKTTFVKR   32 (221)
Q Consensus        14 ~~i-~v~G~~g~GKStli~~   32 (221)
                      .+| .+.|..|+||||+.-.
T Consensus        20 ~~iii~sGKGGVGKTT~a~n   39 (279)
T d1ihua2          20 HGLIMLMGKGGVGKTTMAAA   39 (279)
T ss_dssp             CEEEEEECSTTSSHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHH
Confidence            444 4559999999998544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=87.47  E-value=0.17  Score=36.51  Aligned_cols=22  Identities=32%  Similarity=0.672  Sum_probs=16.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHH
Q 027593           10 DYPSFKLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        10 ~~~~~~i~v~G~~g~GKStli~~   32 (221)
                      .|+.+- .+.|-.|+||||+.-.
T Consensus         6 ~~p~~i-~~sGKGGVGKTTvaa~   27 (296)
T d1ihua1           6 NIPPYL-FFTGKGGVGKTSISCA   27 (296)
T ss_dssp             SCCSEE-EEECSTTSSHHHHHHH
T ss_pred             CCCeEE-EEECCCcChHHHHHHH
Confidence            456544 5799999999997554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.39  E-value=0.12  Score=37.33  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=17.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027593           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli~~~~   34 (221)
                      =|++|+|.+|+|||+|+..+.
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHH
T ss_pred             ceEeeccCCCCChHHHHHHHH
Confidence            478999999999999987644

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.29  E-value=0.27  Score=33.01  Aligned_cols=20  Identities=15%  Similarity=0.449  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027593           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~g~GKStli~~~~~   35 (221)
                      |+|+|...||||.+..++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~   21 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIG   21 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EEEECCCCccHHHHHHHHHh
Confidence            68999999999999998653

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=84.82  E-value=1.1  Score=29.73  Aligned_cols=27  Identities=19%  Similarity=0.227  Sum_probs=18.8

Q ss_pred             cCCceEEEEEcC-CCCcHHHHHHHHhcCC
Q 027593           10 DYPSFKLVIVGD-GGTGKTTFVKRHLTGE   37 (221)
Q Consensus        10 ~~~~~~i~v~G~-~g~GKStli~~~~~~~   37 (221)
                      ..+.+||+|+|- .+.|-|.+.. +..+.
T Consensus        21 ~k~~~kV~I~GA~G~Ig~~l~~~-La~g~   48 (175)
T d7mdha1          21 WKKLVNIAVSGAAGMISNHLLFK-LASGE   48 (175)
T ss_dssp             CCCCEEEEEETTTSHHHHHHHHH-HHHTT
T ss_pred             cCCCcEEEEECCCcHHHHHHHHH-HHcCc
Confidence            345789999996 7788776655 45443

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=82.89  E-value=0.4  Score=30.68  Aligned_cols=16  Identities=38%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             EEEcCCCCcHHH-HHHH
Q 027593           17 VIVGDGGTGKTT-FVKR   32 (221)
Q Consensus        17 ~v~G~~g~GKSt-li~~   32 (221)
                      +++||=.||||| |+++
T Consensus         6 ~i~GpMfsGKTteLi~~   22 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRR   22 (139)
T ss_dssp             EEECSTTSCHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHH
Confidence            568999999999 5554

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=82.62  E-value=2.9  Score=32.69  Aligned_cols=73  Identities=11%  Similarity=0.028  Sum_probs=45.9

Q ss_pred             hhccHHHHHHHHHhhcCCCCEEEEEeCCCCCcccccHHHHHHHHhcCceEEEeecCCCCChHHHHHHHHHHHhCC
Q 027593          100 TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       100 s~~~~~~~~~~~~~~~~~~p~i~v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~l~~~  174 (221)
                      .+.++..-++.+..+  +.|++|++|+.............+++...++.....=++-|.|-.++-..+++++...
T Consensus       353 G~~NL~rHIeNi~~f--GlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~~  425 (549)
T d1eg7a_         353 GFANLEKHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESR  425 (549)
T ss_dssp             HHHHHHHHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhhhc--CCCeEEEeccCCccchhHHHHHHHHHhhcCcceeeecccCccchHHHHHHHHHHHhcc
Confidence            344455555555554  8999999999886543333334456666666544333445667788888888877444

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.50  E-value=0.32  Score=32.77  Aligned_cols=15  Identities=40%  Similarity=0.437  Sum_probs=12.9

Q ss_pred             EEEEEcCCCCcHHHH
Q 027593           15 KLVIVGDGGTGKTTF   29 (221)
Q Consensus        15 ~i~v~G~~g~GKStl   29 (221)
                      ++.++++.|+|||.+
T Consensus        25 n~lv~~pTGsGKT~i   39 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLI   39 (200)
T ss_dssp             CEEEECCTTSCHHHH
T ss_pred             CeEEEeCCCCcHHHH
Confidence            477999999999974

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.81  E-value=0.2  Score=31.34  Aligned_cols=17  Identities=29%  Similarity=0.266  Sum_probs=13.3

Q ss_pred             eEEEEEcCCCCcHHHHH
Q 027593           14 FKLVIVGDGGTGKTTFV   30 (221)
Q Consensus        14 ~~i~v~G~~g~GKStli   30 (221)
                      -++.+.+++|+|||..+
T Consensus         8 ~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             CEEEECCCTTSSTTTTH
T ss_pred             CcEEEEcCCCCChhHHH
Confidence            45678899999999443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.12  E-value=0.19  Score=34.19  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCcHHHHH
Q 027593           15 KLVIVGDGGTGKTTFV   30 (221)
Q Consensus        15 ~i~v~G~~g~GKStli   30 (221)
                      ++.+.+++|+|||+..
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            6899999999999763

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.00  E-value=0.41  Score=33.03  Aligned_cols=71  Identities=13%  Similarity=0.135  Sum_probs=44.3

Q ss_pred             EEEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCCCcccccH
Q 027593           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA  136 (221)
Q Consensus        61 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-~v~nk~D~~~~~~~~  136 (221)
                      .+.+.++|+++....  .....+..+|.++++...+ ..+..........+.+  .+.|+. +++|+.+........
T Consensus       111 ~~d~IiiD~~~~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~--~~~~~~giv~N~~~~~~~~~~~  182 (237)
T d1g3qa_         111 KFDFILIDCPAGLQL--DAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK--AGLAILGFVLNRYGRSDRDIPP  182 (237)
T ss_dssp             GCSEEEEECCSSSSH--HHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH--TTCEEEEEEEEEETSCTTCCCH
T ss_pred             cCCEEEEcccccccc--cchhhhhhhhccccccccc-ceecchhhHHHHHHhh--hhhhhhhhhhcccccccchhhh
Confidence            356788898875432  2233466789998888865 4455555555554443  256665 788999876544443

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.52  E-value=0.54  Score=32.33  Aligned_cols=64  Identities=6%  Similarity=-0.079  Sum_probs=35.8

Q ss_pred             EEEEEEeCCCcccccccccccccCccEEEEEEeCCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCCC
Q 027593           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK  130 (221)
Q Consensus        62 ~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~i~v~nk~D~~  130 (221)
                      ..+.++|+|+...  ......+..+|.++++.... ..+..............  +.+ +-+++|+.+..
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTL  174 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTT
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc--ccccccccccccccc
Confidence            3467888877542  22233456788888887764 33444443333333333  334 44778987654