Citrus Sinensis ID: 027607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE
Secondary Structure (PSIPRED)
cccccccccccccEEEEEEccccccHHHHHHHHccccccccccccccEEEEEEEEEEcccEEEEEEEEcccccccccccccEEEcccEEEEEEEcccHHHHccHHHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEEEccccccHHHHHccEHHHHHccEEEccccEEEEEEEEEEccEEEEEEEEEEccHHHcccccHHHHccccEEEEEEEcccHHHHHcHHHHHHHHHHHHccccEEEEEEccccccccccHHHHcccccccEEEEEEEHHHcEcccHHHHHHHHHHHccccccEcccccEccccccccHHHHHHHHHHHHHHHHHHcccccccHcc
Coil and Loop (DISEMBL)
malpnqqtvdypsfklvivgdggtgkTTFVKRHLtgefekkyeptigvevhpldfftncgkirfycwdtagqekfgglrdgyyihgqCAIIMFDVTArltyknvptwhrdlcrvcenipivlcgnkvdvknrqvKAKQVTFHRKKNLQYYEISAksnynfekPFLYLARKlagdpnlhfvespalappevQIDLAAQQQHEAELAAaasqplpdedddafe
Flexible Loop (DISEMBL)
malpnqqtvdypsfklvivgdggtgKTTFVKRHltgefekkyeptigvevhpldFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPivlcgnkvdvknrqvkakqvtfhrkknlqyYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAaasqplpdedddafe
Low Complexity Region (SEG)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDlaaqqqheaelaaaaSQPLPDEDDDAFE
Disordered region (IsUnstruct)
********VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE****************************************
Disordered Region (DISOPRED)
***********PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA*************************************************
Disordered Region (DISEMBL)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ***********************
Disordered Region (DISPRO)
******QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDL***************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q8H156	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.986	1e-129
P41918	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.972	1e-127
P38548	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-125
P38547	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.959	1e-125
P41919	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-124
P38546	221	GTP-binding nuclear prote	N/A	no	1.0	1.0	0.954	1e-124
P41916	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.945	1e-123
P54766	209	GTP-binding nuclear prote	N/A	no	0.945	1.0	0.985	1e-121
P54765	209	GTP-binding nuclear prote	N/A	no	0.945	1.0	0.980	1e-121
P41917	221	GTP-binding nuclear prote	yes	no	1.0	1.0	0.963	1e-118

>sp|Q8H156|RAN3_ARATH GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2

 Score =  459 bits (1181), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD+DDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.
Arabidopsis thaliana (taxid: 3702)

>sp|P41918|RANA1_TOBAC GTP-binding nuclear protein Ran-A1 OS=Nicotiana tabacum GN=RAN-A1 PE=2 SV=1

 Score =  454 bits (1169), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/221 (97%), Positives = 218/221 (98%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALP QQ VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPGQQAVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD+DD+ F+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDETFD 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38548|RAN_VICFA GTP-binding nuclear protein Ran/TC4 OS=Vicia faba PE=2 SV=1

 Score =  447 bits (1149), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 216/221 (97%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQID+A QQ+HE E+  AA+QPLPD+DDDAFE
Sbjct: 181 ESPALAPPEVQIDIALQQRHENEILEAANQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Vicia faba (taxid: 3906)

>sp|P38547|RAN2_SOLLC GTP-binding nuclear protein Ran2 OS=Solanum lycopersicum GN=RAN2 PE=2 SV=1

 Score =  446 bits (1146), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/221 (95%), Positives = 215/221 (97%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQ  HE EL AA +QPLPD+DD+AFE
Sbjct: 181 ESPALAPPEVQIDLAAQALHEQELQAALNQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41919|RANB1_TOBAC GTP-binding nuclear protein Ran-B1 OS=Nicotiana tabacum GN=RAN-B1 PE=2 SV=1

 Score =  445 bits (1144), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 214/221 (96%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQ HE EL  AA+  LPD+DD+AFE
Sbjct: 181 ESPALAPPEVQIDLAAQQLHEQELLQAAAHALPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Nicotiana tabacum (taxid: 4097)

>sp|P38546|RAN1_SOLLC GTP-binding nuclear protein Ran1 OS=Solanum lycopersicum GN=RAN1 PE=2 SV=1

 Score =  443 bits (1140), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 211/221 (95%), Positives = 214/221 (96%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDGNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEV IDLAAQ  HE EL  AA+QPLPD+DD+AFE
Sbjct: 181 ESPALAPPEVHIDLAAQALHEEELQQAANQPLPDDDDEAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Solanum lycopersicum (taxid: 4081)

>sp|P41916|RAN1_ARATH GTP-binding nuclear protein Ran-1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 209/221 (94%), Positives = 215/221 (97%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           E+PALAPPEV ID+A QQ++EAEL  AA+QPLPD+DDD FE
Sbjct: 181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

>sp|P54766|RAN1B_LOTJA GTP-binding nuclear protein Ran1B (Fragment) OS=Lotus japonicus GN=RAN1B PE=2 SV=1

 Score =  434 bits (1117), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 206/209 (98%), Positives = 209/209 (100%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ
Sbjct: 1   NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR
Sbjct: 61  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 120

Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI
Sbjct: 121 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 180

Query: 193 DLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           DLAAQQQHEAELAAAASQPLPD+DDDAF+
Sbjct: 181 DLAAQQQHEAELAAAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|P54765|RAN1A_LOTJA GTP-binding nuclear protein Ran1A (Fragment) OS=Lotus japonicus GN=RAN1A PE=2 SV=1

 Score =  432 bits (1112), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 205/209 (98%), Positives = 208/209 (99%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           +FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ
Sbjct: 1   NFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR
Sbjct: 61  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 120

Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI
Sbjct: 121 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 180

Query: 193 DLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           DLAAQQQHEAELA AASQPLPD+DDDAF+
Sbjct: 181 DLAAQQQHEAELAQAASQPLPDDDDDAFD 209

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Lotus japonicus (taxid: 34305)

>sp|P41917|RAN2_ARATH GTP-binding nuclear protein Ran-2 OS=Arabidopsis thaliana GN=RAN2 PE=1 SV=3

 Score =  424 bits (1091), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/221 (96%), Positives = 219/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEV +D+AAQQQ+EA+LAAAA+QPLPD+DDDAFE
Sbjct: 181 ESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
20149262	221	GTP-binding protein [Helianthus annuus]	1.0	1.0	0.990	1e-128
297738907	260	unnamed protein product [Vitis vinifera]	1.0	0.85	0.990	1e-128
296081995	254	unnamed protein product [Vitis vinifera]	1.0	0.870	0.990	1e-128
225430202	221	PREDICTED: GTP-binding nuclear protein R	1.0	1.0	0.990	1e-128
388518503	221	unknown [Lotus japonicus]	1.0	1.0	0.986	1e-127
15240474	221	GTP-binding nuclear protein Ran-3 [Arabi	1.0	1.0	0.986	1e-127
356507752	221	PREDICTED: GTP-binding nuclear protein R	1.0	1.0	0.981	1e-127
344189955	221	Ran3A-1 [Dimocarpus longan] gi|344189957	1.0	1.0	0.986	1e-127
297792995	221	hypothetical protein ARALYDRAFT_918663 [	1.0	1.0	0.981	1e-127
388519813	221	unknown [Lotus japonicus]	1.0	1.0	0.981	1e-127

>gi|20149262|gb|AAM12880.1|AF495716_1 GTP-binding protein [Helianthus annuus]

 Score =  463 bits (1191), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 221/221 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQID+AAQQQHEAELAAAASQPLPD+DDDAFE
Sbjct: 181 ESPALAPPEVQIDMAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Helianthus annuus

Species: Helianthus annuus

Genus: Helianthus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738907|emb|CBI28152.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1190), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 40  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 99

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 100 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 159

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 160 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 219

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPD+DDDAFE
Sbjct: 220 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081995|emb|CBI21000.3| unnamed protein product [Vitis vinifera]

 Score =  462 bits (1188), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 34  MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 93

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 94  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 153

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 154 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 213

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPD+DDDAFE
Sbjct: 214 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430202|ref|XP_002284967.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera] gi|225445410|ref|XP_002285018.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Vitis vinifera]

 Score =  461 bits (1186), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/221 (99%), Positives = 220/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEV IDLAAQQQHEAELAAAASQPLPD+DDDAFE
Sbjct: 181 ESPALAPPEVHIDLAAQQQHEAELAAAASQPLPDDDDDAFE 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518503|gb|AFK47313.1| unknown [Lotus japonicus]

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 221/221 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD+DDDAF+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240474|ref|NP_200330.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana] gi|76789666|sp|Q8H156.2|RAN3_ARATH RecName: Full=GTP-binding nuclear protein Ran-3; AltName: Full=Ras-related nuclear protein 3 gi|2149051|gb|AAB58478.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|9758116|dbj|BAB08588.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|14596017|gb|AAK68736.1| small Ras-like GTP-binding protein [Arabidopsis thaliana] gi|15215578|gb|AAK91334.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|21435991|gb|AAM51573.1| AT5g55190/MCO15_14 [Arabidopsis thaliana] gi|332009215|gb|AED96598.1| GTP-binding nuclear protein Ran-3 [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPD+DDD FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507752|ref|XP_003522628.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max] gi|356507754|ref|XP_003522629.1| PREDICTED: GTP-binding nuclear protein Ran-3-like [Glycine max]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 220/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAEL AAASQPLPD+DD++FE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDESFE 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|344189955|gb|AEM97804.1| Ran3A-1 [Dimocarpus longan] gi|344189957|gb|AEM97805.1| Ran3A-2 [Dimocarpus longan] gi|344189959|gb|AEM97806.1| Ran3A-3 [Dimocarpus longan] gi|344189961|gb|AEM97807.1| Ran3A-4 [Dimocarpus longan] gi|344189963|gb|AEM97808.1| Ran3A-5 [Dimocarpus longan] gi|344189965|gb|AEM97809.1| Ran3A-6 [Dimocarpus longan] gi|344189967|gb|AEM97810.1| Ran3A-7 [Dimocarpus longan] gi|344189969|gb|AEM97811.1| Ran3A-8 [Dimocarpus longan] gi|344189971|gb|AEM97812.1| Ran3A-9 [Dimocarpus longan] gi|344189973|gb|AEM97813.1| Ran3A-10 [Dimocarpus longan] gi|344189975|gb|AEM97814.1| Ran3A-11 [Dimocarpus longan] gi|380690692|gb|AFD93406.1| Ras-like GTP-binding protein 3A-14 [Dimocarpus longan] gi|380690694|gb|AFD93407.1| Ras-like GTP-binding protein 3A-13 [Dimocarpus longan] gi|391358664|gb|AFM43803.1| Ran3A-12 [Dimocarpus longan]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 218/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAEL AAASQPLPD+DDDAFE
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELQAAASQPLPDDDDDAFE 221

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297792995|ref|XP_002864382.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata] gi|297310217|gb|EFH40641.1| hypothetical protein ARALYDRAFT_918663 [Arabidopsis lyrata subsp. lyrata]

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 219/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQID+AAQQQHEAELAAAASQPLPD+DDD FE
Sbjct: 181 ESPALAPPEVQIDIAAQQQHEAELAAAASQPLPDDDDDTFE 221

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519813|gb|AFK47968.1| unknown [Lotus japonicus]

 Score =  458 bits (1178), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 217/221 (98%), Positives = 220/221 (99%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYP+FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPNFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAFE 221
           ESPALAPPEVQIDLAAQQQHEAELA AASQPLPD+DDDAF+
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAQAASQPLPDDDDDAFD 221

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2161600	221	RAN3 "RAN GTPase 3" [Arabidops	1.0	1.0	0.918	1.6e-111
TAIR|locus:2147715	221	RAN2 "RAS-related GTP-binding	1.0	1.0	0.909	6.8e-111
TAIR|locus:2147700	221	RAN-1 "RAS-related nuclear pro	1.0	1.0	0.904	6.1e-110
SGD|S000005711	220	GSP2 "GTP binding protein (mam	0.981	0.986	0.755	9.6e-89
SGD|S000004284	219	GSP1 "Ran GTPase" [Saccharomyc	0.941	0.949	0.774	3.7e-87
WB|WBGene00004302	215	ran-1 [Caenorhabditis elegans	0.936	0.962	0.782	6e-87
UNIPROTKB|O17915	215	ran-1 "GTP-binding nuclear pro	0.936	0.962	0.782	6e-87
CGD|CAL0005360	214	GSP1 [Candida albicans (taxid:	0.941	0.971	0.759	4.3e-86
UNIPROTKB|Q59P43	214	GSP1 "RAN-like GTP binding pro	0.941	0.971	0.759	4.3e-86
ASPGD|ASPL0000033427	215	ran [Emericella nidulans (taxi	0.932	0.958	0.762	8.9e-86

TAIR|locus:2161600 RAN3 "RAN GTPase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1101 (392.6 bits), Expect = 1.6e-111, P = 1.6e-111
 Identities = 203/221 (91%), Positives = 204/221 (92%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDANLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 221
             ESPALAPPEVQID               SQPLPD+DDD FE
Sbjct:   181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDDTFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2147715 RAN2 "RAS-related GTP-binding nuclear protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
 Identities = 201/221 (90%), Positives = 204/221 (92%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 221
             ESPALAPPEV +D               +QPLPD+DDDAFE
Sbjct:   181 ESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDDAFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006606 "protein import into nucleus" evidence=TAS

TAIR|locus:2147700 RAN-1 "RAS-related nuclear protein-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
 Identities = 200/221 (90%), Positives = 203/221 (91%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD NLHFV
Sbjct:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDQNLHFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDDDAFE 221
             E+PALAPPEV ID               +QPLPD+DDD FE
Sbjct:   181 ETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDIFE 221

GO:0003924 "GTPase activity" evidence=IEA;ISS

GO:0005525 "GTP binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0048046 "apoplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006606 "protein import into nucleus" evidence=TAS

SGD|S000005711 GSP2 "GTP binding protein (mammalian Ranp homolog)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 886 (316.9 bits), Expect = 9.6e-89, P = 9.6e-89
 Identities = 164/217 (75%), Positives = 181/217 (83%)

Query:     1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
             M+ P Q   + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G
Sbjct:     1 MSAPAQNNAEVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFG 60

Query:    61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
             +I+F  WDTAGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct:    61 EIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPI 120

Query:   121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
             VLCGNKVDVK R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct:   121 VLCGNKVDVKERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 180

Query:   181 ESPALAPPEVQIDXXXXXXXXXXXXXXXSQPLPDEDD 217
              SPALAPPEVQ+D               + PLPDEDD
Sbjct:   181 ASPALAPPEVQVDEQLMHQYQQEMDQATALPLPDEDD 217

GO:0005634 "nucleus" evidence=IEA;IGI;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000004284 GSP1 "Ran GTPase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
 Identities = 161/208 (77%), Positives = 177/208 (85%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct:     9 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    69 AGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPE
Sbjct:   129 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188

Query:   190 VQIDXXXXXXXXXXXXXXXSQPLPDEDD 217
             VQ+D               + PLPDEDD
Sbjct:   189 VQVDEQLMQQYQQEMEQATALPLPDEDD 216

GO:0005737 "cytoplasm" evidence=TAS

GO:0006913 "nucleocytoplasmic transport" evidence=IEA;TAS

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA;IGI;ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006997 "nucleus organization" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=ISM

WB|WBGene00004302 ran-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 162/207 (78%), Positives = 174/207 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDEDDD 218
             +D                  LPD+DDD
Sbjct:   188 MDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0046785 "microtubule polymerization" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP

UNIPROTKB|O17915 ran-1 "GTP-binding nuclear protein ran-1" [Caenorhabditis elegans (taxid:6239)]

 Score = 869 (311.0 bits), Expect = 6.0e-87, P = 6.0e-87
 Identities = 162/207 (78%), Positives = 174/207 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+IRF  WDTAG
Sbjct:     8 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGQIRFNVWDTAG 67

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+
Sbjct:    68 QEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLARVCENIPIVLCGNKVDVKD 127

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEVQ
Sbjct:   128 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLLGDPNLEFVAMPALAPPEVQ 187

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDEDDD 218
             +D                  LPD+DDD
Sbjct:   188 MDPAMIAEYEKDLDNAAKADLPDDDDD 214

GO:0005515 "protein binding" evidence=IPI

CGD|CAL0005360 GSP1 [Candida albicans (taxid:5476)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 158/208 (75%), Positives = 175/208 (84%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDXXXXXXXXXXXXXXXSQPLPDEDD 217
             VQ+D               + PLPDEDD
Sbjct:   184 VQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051726 "regulation of cell cycle" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006997 "nucleus organization" evidence=IEA

GO:0031938 "regulation of chromatin silencing at telomere" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0000467 "exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA

UNIPROTKB|Q59P43 GSP1 "RAN-like GTP binding protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 861 (308.1 bits), Expect = 4.3e-86, P = 4.3e-86
 Identities = 158/208 (75%), Positives = 175/208 (84%)

Query:    10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
             + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G+++F  WDT
Sbjct:     4 EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLGFHTNFGELKFDVWDT 63

Query:    70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
             AGQEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct:    64 AGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 123

Query:   130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
             K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+P L FV SPALAPPE
Sbjct:   124 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNPQLEFVASPALAPPE 183

Query:   190 VQIDXXXXXXXXXXXXXXXSQPLPDEDD 217
             VQ+D               + PLPDEDD
Sbjct:   184 VQVDADLMQKYQQEMEQATALPLPDEDD 211

GO:0003924 "GTPase activity" evidence=IGI;ISS

GO:0005525 "GTP binding" evidence=IDA

GO:0006364 "rRNA processing" evidence=ISS

GO:0006913 "nucleocytoplasmic transport" evidence=ISS

GO:0051276 "chromosome organization" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=ISS

ASPGD|ASPL0000033427 ran [Emericella nidulans (taxid:162425)]

 Score = 858 (307.1 bits), Expect = 8.9e-86, P = 8.9e-86
 Identities = 157/206 (76%), Positives = 174/206 (84%)

Query:    12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHP+ F TN G I+F  WDTAG
Sbjct:     7 PTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPIKFTTNLGTIQFDVWDTAG 66

Query:    72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
             QEKFGGLRDGYYI+GQC IIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDVK 
Sbjct:    67 QEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDVKE 126

Query:   132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 191
             R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL G+ +L FV +PALAPPEVQ
Sbjct:   127 RKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLVGNASLEFVAAPALAPPEVQ 186

Query:   192 IDXXXXXXXXXXXXXXXSQPLPDEDD 217
             +D               +QPLPDEDD
Sbjct:   187 VDATLMQQYSDEMAAAANQPLPDEDD 212

GO:0005622 "intracellular" evidence=IDA

GO:0006913 "nucleocytoplasmic transport" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005576 "extracellular region" evidence=IDA

GO:0006997 "nucleus organization" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3T054	RAN_BOVIN	No assigned EC number	0.7853	0.9276	0.9490	yes	no
A2WSI7	RAN1_ORYSI	No assigned EC number	0.97	0.9049	0.9049	N/A	no
O17915	RAN_CAEEL	No assigned EC number	0.8172	0.8914	0.9162	yes	no
P54766	RAN1B_LOTJA	No assigned EC number	0.9856	0.9457	1.0	N/A	no
P54765	RAN1A_LOTJA	No assigned EC number	0.9808	0.9457	1.0	N/A	no
P41917	RAN2_ARATH	No assigned EC number	0.9638	1.0	1.0	yes	no
P41916	RAN1_ARATH	No assigned EC number	0.9457	1.0	1.0	yes	no
P38546	RAN1_SOLLC	No assigned EC number	0.9547	1.0	1.0	N/A	no
P38547	RAN2_SOLLC	No assigned EC number	0.9592	1.0	1.0	N/A	no
P38542	RAN_BRUMA	No assigned EC number	0.8086	0.9457	0.9720	N/A	no
Q7F7I7	RAN1_ORYSJ	No assigned EC number	0.97	0.9049	0.9049	yes	no
Q9VZ23	RAN_DROME	No assigned EC number	0.7511	0.9638	0.9861	yes	no
P38548	RAN_VICFA	No assigned EC number	0.9547	1.0	1.0	N/A	no
P41919	RANB1_TOBAC	No assigned EC number	0.9547	1.0	1.0	N/A	no
P41918	RANA1_TOBAC	No assigned EC number	0.9728	1.0	1.0	N/A	no
A2YEQ6	RAN3_ORYSI	No assigned EC number	0.8127	0.9909	0.9690	N/A	no
A2Y7R5	RAN2_ORYSI	No assigned EC number	0.9571	0.9502	0.9502	N/A	no
Q6FR65	GSP1_CANGA	No assigned EC number	0.7772	0.9547	0.9859	yes	no
Q4R4M9	RAN_MACFA	No assigned EC number	0.7853	0.9276	0.9490	N/A	no
Q7GD79	RAN2_ORYSJ	No assigned EC number	0.9571	0.9502	0.9502	yes	no
Q74ZA9	GSP1_ASHGO	No assigned EC number	0.7884	0.9411	0.9719	yes	no
Q8K586	RANT_RAT	No assigned EC number	0.7512	0.9276	0.9490	no	no
P38544	RAN_ONCVO	No assigned EC number	0.7846	0.9457	0.9720	N/A	no
P52301	RAN_XENLA	No assigned EC number	0.7853	0.9276	0.9490	N/A	no
P28748	SPI1_SCHPO	No assigned EC number	0.7725	0.9547	0.9768	yes	no
P32836	GSP2_YEAST	No assigned EC number	0.7695	0.9819	0.9863	yes	no
P32835	GSP1_YEAST	No assigned EC number	0.7932	0.9411	0.9497	yes	no
Q9FLQ3	RAN4_ARATH	No assigned EC number	0.7028	0.9366	0.9324	no	no
Q5R556	RAN_PONAB	No assigned EC number	0.7853	0.9276	0.9490	yes	no
P79735	RAN_DANRE	No assigned EC number	0.7756	0.9276	0.9534	yes	no
P62828	RAN_RAT	No assigned EC number	0.7853	0.9276	0.9490	yes	no
P41914	RAN_TETPY	No assigned EC number	0.5900	0.9819	0.9730	N/A	no
Q7RVL0	GSP1_NEUCR	No assigned EC number	0.7584	0.9366	0.9627	N/A	no
Q69XM7	RAN3_ORYSJ	No assigned EC number	0.8127	0.9909	0.9690	no	no
Q7ZZX9	RAN_CARAU	No assigned EC number	0.7707	0.9276	0.9534	N/A	no
P62825	RAN_CANFA	No assigned EC number	0.7853	0.9276	0.9490	yes	no
P62826	RAN_HUMAN	No assigned EC number	0.7853	0.9276	0.9490	yes	no
P62827	RAN_MOUSE	No assigned EC number	0.7853	0.9276	0.9490	yes	no
Q9P4E9	GSP1_CANAW	No assigned EC number	0.7740	0.9411	0.9719	N/A	no
Q9YGC0	RAN_SALSA	No assigned EC number	0.7707	0.9276	0.9534	N/A	no
Q61820	RANT_MOUSE	No assigned EC number	0.7463	0.9276	0.9490	no	no
Q8H156	RAN3_ARATH	No assigned EC number	0.9864	1.0	1.0	yes	no
P33519	RAN_DICDI	No assigned EC number	0.6682	0.9276	0.9669	yes	no
Q8TFK3	GSP1_YARLI	No assigned EC number	0.75	0.9411	0.9719	yes	no
P42558	RAN_CHICK	No assigned EC number	0.7853	0.9276	0.9490	yes	no
P38545	RAN_PLAFA	No assigned EC number	0.6926	0.9230	0.9532	yes	no
P41915	RAN_TETTH	No assigned EC number	0.5803	0.9819	0.9644	N/A	no
Q6GL85	RAN_XENTR	No assigned EC number	0.7804	0.9276	0.9490	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	0.0
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	1e-157
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-148
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-134
pfam00071	162	pfam00071, Ras, Ras family	1e-65
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	7e-52
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	3e-42
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	4e-39
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-36
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-35
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-33
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	6e-32
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-31
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	6e-31
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-30
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-30
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-30
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-30
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-30
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-29
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	4e-28
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	9e-28
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	3e-27
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	3e-27
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	5e-27
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	6e-26
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	6e-26
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	8e-26
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	1e-25
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-25
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	3e-25
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-25
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	2e-24
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-24
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	4e-24
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	5e-24
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	7e-24
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	1e-23
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	3e-23
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	5e-23
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-23
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-22
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	8e-22
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-21
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	2e-21
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-21
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-21
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	3e-21
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-21
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	9e-21
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	5e-20
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	1e-19
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-19
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-19
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-19
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	2e-18
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	5e-18
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	8e-18
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	8e-18
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	9e-18
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	2e-17
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	2e-17
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	4e-17
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-16
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	1e-16
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-16
pfam08477	116	pfam08477, Miro, Miro-like protein	1e-15
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	4e-15
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	2e-14
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	4e-14
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	4e-14
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	2e-13
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	3e-12
cd01874	175	cd01874, Cdc42, cell division cycle 42 (Cdc42) is	3e-12
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	3e-12
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	2e-11
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	4e-11
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	6e-11
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	2e-10
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	3e-10
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	4e-10
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	6e-10
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	2e-08
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	6e-08
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	7e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	1e-06
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	5e-06
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	1e-05
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	1e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-05
cd04157	162	cd04157, Arl6, Arf-like 6 (Arl6) GTPase	5e-05
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	9e-05
PLN00023	334	PLN00023, PLN00023, GTP-binding protein; Provision	3e-04
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	3e-04
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	6e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	7e-04
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	0.002
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	0.003

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score =  501 bits (1293), Expect = 0.0
 Identities = 217/219 (99%), Positives = 219/219 (100%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG
Sbjct: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI
Sbjct: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV
Sbjct: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDA 219
           ESPALAPPEVQIDLAAQQQHEAELAAAA+QPLPD+DDDA
Sbjct: 181 ESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDDA 219

Length = 219

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score =  433 bits (1115), Expect = e-157
 Identities = 166/213 (77%), Positives = 184/213 (86%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           QQ  + P FKL++VGDGG GKTTFVKRHLTGEFEKKY PT+GVEVHPL F+TNCG I F 
Sbjct: 2   QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFN 61

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
            WDTAGQEKFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRD+ RVCENIPIVL GN
Sbjct: 62  VWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGN 121

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           KVDVK+RQVKA+Q+TFHRKKNLQYY+ISAKSNYNFEKPFL+LAR+L  DPNL FV +PAL
Sbjct: 122 KVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLTNDPNLVFVGAPAL 181

Query: 186 APPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218
           AP E+QID     Q E EL AAA+ PLPD+DDD
Sbjct: 182 APEEIQIDPELVAQAEKELQAAANVPLPDDDDD 214

Length = 215

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score =  410 bits (1055), Expect = e-148
 Identities = 163/200 (81%), Positives = 174/200 (87%)

Query: 19  VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL 78
           VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G IRF  WDTAGQEKFGGL
Sbjct: 1   VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGL 60

Query: 79  RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ 138
           RDGYYI GQCAIIMFDVTAR+TYKNVP WHRDL RVCENIPIVLCGNKVDVK+R+VKAK 
Sbjct: 61  RDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKS 120

Query: 139 VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQ 198
           +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D A   
Sbjct: 121 ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAA 180

Query: 199 QHEAELAAAASQPLPDEDDD 218
           Q+E +L  AA+  LPDEDDD
Sbjct: 181 QYEHDLEVAATTALPDEDDD 200

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score =  373 bits (961), Expect = e-134
 Identities = 144/166 (86%), Positives = 154/166 (92%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPLDF TN GKIRF  WDTAGQE
Sbjct: 1   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI GQCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 61  KFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 120

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           VK KQ+TFHRKKNLQYYEISAKSNYNFEKPFL+LARKL G+PNL F
Sbjct: 121 VKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPNLEF 166

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  199 bits (509), Expect = 1e-65
 Identities = 62/160 (38%), Positives = 99/160 (61%), Gaps = 3/160 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDGG GK++ + R    +F ++Y PTIGV+ +      +   ++   WDTAGQE+
Sbjct: 1   KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQER 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R 132
           F  LR  YY   Q  ++++D+T+R +++NV  W  ++ R   EN+PIVL GNK D+++ R
Sbjct: 61  FRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADENVPIVLVGNKCDLEDQR 120

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            V  ++     ++  L + E SAK+N N E+ F  LAR++
Sbjct: 121 VVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREI 160

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  164 bits (418), Expect = 7e-52
 Identities = 61/161 (37%), Positives = 94/161 (58%), Gaps = 7/161 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GKT+ + R +  +F + Y+ TIGV+        +  K++   WDTAGQE
Sbjct: 1   FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIGVDFKSKTIEVDGKKVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD-VKN 131
           +F  +   YY     AI+++DVT R +++N+  W  +L      NIPI+L GNK D    
Sbjct: 61  RFRSITSSYYRGAHGAILVYDVTNRESFENLDKWLNELKEYAPPNIPIILVGNKSDLEDE 120

Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           RQV   +A+Q  F ++  L ++E SAK+  N ++ F  LAR
Sbjct: 121 RQVSTEEAQQ--FAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  140 bits (355), Expect = 3e-42
 Identities = 59/166 (35%), Positives = 98/166 (59%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF----FTNCGK-IRFYCWD 68
           FK++++GD G GK++ + R   G+F ++Y+ TIGV     DF        GK ++   WD
Sbjct: 1   FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGV-----DFKTKTIEVDGKRVKLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  +   YY     A++++D+T R +++N+  W ++L      N+ I+L GNK 
Sbjct: 56  TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLENWLKELREYASPNVVIMLVGNKS 115

Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D++  RQV  ++   F  +  L ++E SAK+N N E+ F  LAR++
Sbjct: 116 DLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score =  133 bits (337), Expect = 4e-39
 Identities = 59/181 (32%), Positives = 84/181 (46%), Gaps = 21/181 (11%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FK+V++GDGG GKTT + R +  EF + Y PTIG              I+   WDTAG
Sbjct: 4   KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV 129
           QE++  LR  YY      +I++D T R  + +    W  +L  +  +++PI+L GNK+D+
Sbjct: 64  QEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123

Query: 130 KNRQ-----------------VKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLYLARK 170
            + Q                 V A +       N    E SAKS    N  + F  L RK
Sbjct: 124 FDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLETSAKSLTGPNVNELFKELLRK 183

Query: 171 L 171
           L
Sbjct: 184 L 184

Length = 219

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score =  125 bits (316), Expect = 1e-36
 Identities = 49/160 (30%), Positives = 86/160 (53%), Gaps = 4/160 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQ 72
           K+++VG+G  GK++ ++R + G F K Y+ TIGV+      F       +R   WDTAGQ
Sbjct: 2   KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  I++F  T R +++ + +W   +   C +IP+VL   K+D+ ++
Sbjct: 62  EEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121

Query: 133 Q-VKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +  ++     ++  L  +  S K ++N  + F YLA K
Sbjct: 122 AVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK 161

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  122 bits (308), Expect = 2e-35
 Identities = 57/172 (33%), Positives = 91/172 (52%), Gaps = 27/172 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKIR 63
           KLV++G GG GK+    R ++GEF ++Y+PTI           G     LD         
Sbjct: 1   KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTIEDSYRKQIVVDGETYT-LDIL------- 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE+F  +RD Y  +G   I+++ +T+R +++ +      + RV   E++PIV
Sbjct: 53  ----DTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIV 108

Query: 122 LCGNKVDVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D++N RQV  ++      +    + E SAK+N N ++ F  L R++
Sbjct: 109 LVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  118 bits (298), Expect = 1e-33
 Identities = 57/168 (33%), Positives = 87/168 (51%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYC 66
            FKLV++GD   GK++ V R +  EF +  E TIG       F T      +   ++F  
Sbjct: 1   QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIGAA-----FLTQTVNLDDTT-VKFEI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE++  L   YY     AI+++D+T+  +++   +W ++L      NI I L GN
Sbjct: 55  WDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQEHGPPNIVIALAGN 114

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    RQV  ++   +  +  L + E SAK+  N  + F  +ARKL
Sbjct: 115 KADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKL 162

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  113 bits (285), Expect = 6e-32
 Identities = 54/161 (33%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK++ + R     F++    TIGV+        +  K++   WDTAGQE
Sbjct: 1   LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIGVDFKVKTVTVDGKKVKLAIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  L   YY   Q  I+++DVT R T+ N+ TW  +L       +   +L GNK+D +N
Sbjct: 61  RFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN 120

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  ++   F RK N+ + E SAK+    ++ F  L  K+
Sbjct: 121 REVTREEGQKFARKHNMLFIETSAKTRIGVQQAFEELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  111 bits (281), Expect = 3e-31
 Identities = 60/166 (36%), Positives = 85/166 (51%), Gaps = 27/166 (16%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----CGK-IRFYCWD 68
           FK+V++GD G GK+  + R    EF    + TIGVE     F T      GK I+   WD
Sbjct: 4   FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVE-----FATRTIQIDGKTIKAQIWD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVL 122
           TAGQE++  +   YY     A++++D+T + T++NV  W      H D      NI I+L
Sbjct: 59  TAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVERWLKELRDHAD-----SNIVIML 113

Query: 123 CGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            GNK D+++ R V   +AK   F  K  L + E SA    N E+ F
Sbjct: 114 VGNKSDLRHLRAVPTEEAKA--FAEKNGLSFIETSALDGTNVEEAF 157

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  111 bits (279), Expect = 6e-31
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 13/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-----GKIRFYCWD 68
            KLV +GD   GKT+ + R +   F+ +Y+ TIG+     DF +         +R   WD
Sbjct: 1   HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGI-----DFLSKTMYVDDKTVRLQLWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKV 127
           TAGQE+F  L   Y      A++++D+T R ++ N   W  D+     N   IVL GNK 
Sbjct: 56  TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKT 115

Query: 128 DV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+   RQV  ++     ++ N  + E SAK+ +N ++ F  +A+ L
Sbjct: 116 DLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  110 bits (278), Expect = 1e-30
 Identities = 52/173 (30%), Positives = 86/173 (49%), Gaps = 31/173 (17%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCGKI 62
           +KLV++G GG GK+    + + G F   Y+PTI           G     LD        
Sbjct: 1   YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTIEDSYRKQIEIDGEVCL-LDIL------ 53

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++PI
Sbjct: 54  -----DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPI 108

Query: 121 VLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VL GNK D+++ R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 VLVGNKCDLESERVVSTEEGKELA--RQWGCPFLETSAKERVNVDEAFYDLVR 159

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  111 bits (280), Expect = 1e-30
 Identities = 69/204 (33%), Positives = 100/204 (49%), Gaps = 21/204 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----VHPLDFFTNCGKIRFYCWDT 69
           FK++++GD G GKT+ +KR++ G F + Y+ TIGV+    V   D  T     R   WD 
Sbjct: 1   FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIGVDFALKVIEWDPNTVV---RLQLWDI 57

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVC----ENIPIVLCG 124
           AGQE+FGG+   YY     AII+FDVT   T++ V  W  DL  +V     E IP +L  
Sbjct: 58  AGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPALLLA 117

Query: 125 NKVDVKNRQVKAKQVTFHR--KKN--LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHF 179
           NK D+K  ++        +  K+N  + ++E SAK N N E+   +L +  L  D  L  
Sbjct: 118 NKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKGLQ- 176

Query: 180 VESPALAPPEVQIDLAAQQQHEAE 203
                    +  IDL  +      
Sbjct: 177 ---SPEPDEDNVIDLKQETTTSKS 197

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  109 bits (275), Expect = 2e-30
 Identities = 53/166 (31%), Positives = 89/166 (53%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT  V+R  +G F ++   TIGV+           +++   WDTAGQE
Sbjct: 4   FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  +   YY     AII +D+T R ++++VP W  ++ +    N+ ++L GNK D++ +
Sbjct: 64  RFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123

Query: 133 QVKAKQVTFHRKKNLQYY-------EISAKSNYNFEKPFLYLARKL 171
               ++V F     L  +       E SAK + N E+ FL +A +L
Sbjct: 124 ----REVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  109 bits (275), Expect = 2e-30
 Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 31/175 (17%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-----------GVEVHPLDFFTNCG 60
             +KLV++G GG GK+    + + G F  +Y+PTI           G     LD      
Sbjct: 1   REYKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTIEDSYRKQIEIDGEVCL-LDIL---- 55

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENI 118
                  DTAGQE+F  +RD Y   G+  ++++ +T R +++ +  +   + RV   +++
Sbjct: 56  -------DTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRVKDRDDV 108

Query: 119 PIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           PIVL GNK D++N R V   + K++   R+    + E SAK   N ++ F  L R
Sbjct: 109 PIVLVGNKCDLENERVVSTEEGKELA--RQWGCPFLETSAKERINVDEAFYDLVR 161

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  108 bits (273), Expect = 5e-30
 Identities = 54/167 (32%), Positives = 93/167 (55%), Gaps = 13/167 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCG--KIRFYCWD 68
           FK+V++G+G  GKT+ V R++  +F +K+E T         FF    N G  +I    WD
Sbjct: 1   FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQAS-----FFQKTVNIGGKRIDLAIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE++  L   YY     AI+++D+T   +++ V  W ++L ++   NI +V+ GNK+
Sbjct: 56  TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKI 115

Query: 128 D-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           D  + R V   +   + +    +++E SAK+    E+ FL LA+++ 
Sbjct: 116 DLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  106 bits (268), Expect = 3e-29
 Identities = 54/170 (31%), Positives = 90/170 (52%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 1   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVTVDDRLVTLQIWD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLC 123
           TAGQE+F  L   +Y    C ++++DVT   +++++ +W  +          EN P V+ 
Sbjct: 56  TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPRDPENFPFVVL 115

Query: 124 GNKVDV-KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           GNK+D+ + RQV  K+       K N+ Y+E SAK   N ++ F  +AR 
Sbjct: 116 GNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARL 165

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  103 bits (260), Expect = 4e-28
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     F   +  TIG++        +  KI+   WDTAGQE
Sbjct: 4   FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   +++N+  W R++     E++  +L GNK D++ +
Sbjct: 64  RFRTITTSYYRGAMGIILVYDITDEKSFENIKNWMRNIDEHASEDVERMLVGNKCDMEEK 123

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLAR 169
               + V+    + L      ++ E SAK+N N E+ FL LA+
Sbjct: 124 ----RVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAK 162

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  102 bits (257), Expect = 9e-28
 Identities = 52/162 (32%), Positives = 89/162 (54%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 5   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
            F  +   YY     A++++D+T R T+ ++ +W  D  R     N+ I+L GNK D+++
Sbjct: 65  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLED-ARQHSNSNMTIMLIGNKCDLES 123

Query: 132 RQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+  + +    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 165

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score =  101 bits (254), Expect = 3e-27
 Identities = 54/167 (32%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYC 66
           P++KLV+VG GG GK+    + +   F   Y+PTI       D +T   +I     R   
Sbjct: 1   PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE------DSYTKQCEIDGQWARLDI 54

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE+F  +R+ Y   G+  +++F VT R +++ V  +H  + RV   +  P++L G
Sbjct: 55  LDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVG 114

Query: 125 NKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D+++++  +++      R+  + Y E SAK   N +K F  L R
Sbjct: 115 NKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVR 161

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  101 bits (254), Expect = 3e-27
 Identities = 58/173 (33%), Positives = 92/173 (53%), Gaps = 27/173 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR---------- 63
           FKL+++GD G GK+  + R     + + Y  TIGV     DF     KIR          
Sbjct: 3   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DF-----KIRTIELDGKTVK 52

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      II++DVT + ++ NV  W +++ R   EN+  +L
Sbjct: 53  LQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLL 112

Query: 123 CGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK D+ +++V    +AK+  F  +  + + E SAK+  N E+ F+ +AR++
Sbjct: 113 VGNKCDLTDKKVVDYTEAKE--FADELGIPFLETSAKNATNVEEAFMTMAREI 163

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  100 bits (252), Expect = 5e-27
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 1   FKFLIIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKSVKLQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVK- 130
           +F  +   YY     A++++D+T+R ++  +  W  D  R     +I I+L GNK D++ 
Sbjct: 61  RFRSVTRSYYRGAAGALLVYDITSRESFNALTNWLTD-ARTLASPDIVIILVGNKKDLED 119

Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 120 DREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 98.4 bits (245), Expect = 6e-26
 Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        N  KI+   WDTAGQE
Sbjct: 3   FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I L GNK D++  
Sbjct: 63  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122

Query: 132 RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 123 RDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI 163

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 98.7 bits (246), Expect = 6e-26
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 14/162 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P        ++  
Sbjct: 6   KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNSQGPDGTSGKAFRVHL 65

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAGQE+F  L   ++      ++MFD+T+  ++ NV  W   L     CEN  IVL
Sbjct: 66  QLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVL 125

Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
            GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 126 IGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEK 167

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 97.9 bits (244), Expect = 8e-26
 Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 14/164 (8%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEF---EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           V+VG GG GK++ +   L GE          T   +V+  +      K+     DT G +
Sbjct: 1   VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVL--VDTPGLD 58

Query: 74  KFGGLRDGYYIHG-----QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
           +FGGL                +++ D T R + ++            E IPI+L GNK+D
Sbjct: 59  EFGGLGREELARLLLRGADLILLVVDSTDRESEEDA-KLLILRRLRKEGIPIILVGNKID 117

Query: 129 -VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLAR 169
            ++ R+V+         K   +  +E+SAK+    ++ F  L  
Sbjct: 118 LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 97.2 bits (242), Expect = 1e-25
 Identities = 49/150 (32%), Positives = 76/150 (50%), Gaps = 1/150 (0%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD   GK+  V+R L   +E +   T  + ++  +       I    WDTAGQE+
Sbjct: 2   KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV 134
           F  +   YY      I++FDVT ++TYKN+  W+ +L      IP ++  NK+D+    V
Sbjct: 62  FQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-V 120

Query: 135 KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
             K+  F  K NL  Y +SA    N  K F
Sbjct: 121 TQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 97.3 bits (242), Expect = 2e-25
 Identities = 51/164 (31%), Positives = 84/164 (51%), Gaps = 7/164 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 6   LKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQE 65

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ GNK+D
Sbjct: 66  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 125

Query: 129 VKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +  RQV  +  Q       +  Y+E SAK   N    F    R+
Sbjct: 126 IPERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 169

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 97.6 bits (243), Expect = 3e-25
 Identities = 57/172 (33%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  +++   WDTAGQE
Sbjct: 7   FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQE 66

Query: 74  KFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131
           +F  +   YY   HG   I+++DVT   ++ NV  W +++ + C+++  VL GNK D   
Sbjct: 67  RFRTITSTYYRGTHG--VIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124

Query: 132 RQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF-----LYLARKLAGDPN 176
           R+V        F  +  +  +E SAK N N E+ F     L L  K      
Sbjct: 125 RKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLRAKKDNLAK 176

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 96.5 bits (240), Expect = 4e-25
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  V+R   G F      TIGV+           KI+   WDTAGQE
Sbjct: 8   FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQE 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNR 132
           +F  +   YY      I+ +D+T   +++ +P W R++ +   N +  +L GNK+D+  R
Sbjct: 68  RFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAER 127

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 128 REVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 95.8 bits (238), Expect = 2e-24
 Identities = 62/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA       DY  FK+V++GD G GK+  + R    EF  + + TIGVE           
Sbjct: 1   MAHRVDHEYDY-LFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGK 59

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIP 119
            ++   WDTAGQE++  +   YY     A++++D+T R T+ NV  W R+L    + NI 
Sbjct: 60  TVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIV 119

Query: 120 IVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           I++ GNK D+ + R V  +       K+ L + E SA    N EK F  +  ++      
Sbjct: 120 IMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEI-----Y 174

Query: 178 HFVESPALAPPE 189
           H +   ALA  E
Sbjct: 175 HIISKKALAAQE 186

Length = 216

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 94.4 bits (235), Expect = 2e-24
 Identities = 51/171 (29%), Positives = 85/171 (49%), Gaps = 24/171 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 2   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQE++  +RD Y   G+  + +F + +R +++++ T+   + RV   +++P+V
Sbjct: 55  ----DTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMV 110

Query: 122 LCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+  R V  +Q     +   + Y E SAK+    E+ F  L R++
Sbjct: 111 LVGNKCDLAARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 94.5 bits (236), Expect = 2e-24
 Identities = 48/170 (28%), Positives = 83/170 (48%), Gaps = 16/170 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGDG  GKT  +  + T +F  +Y PT+  + +  +   +  ++    WDTAGQE+
Sbjct: 2   KIVVVGDGAVGKTCLLISYTTNKFPTEYVPTV-FDNYSANVTVDGKQVNLGLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD----- 128
           +  LR   Y      ++ F V +  +++NV T W+ ++   C N+PI+L G K+D     
Sbjct: 61  YDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKHYCPNVPIILVGTKIDLRDDG 120

Query: 129 --VKNRQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +K  + K K +T             ++Y E SA +    ++ F    R
Sbjct: 121 NTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 94.7 bits (235), Expect = 4e-24
 Identities = 54/170 (31%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK++++GD G GK++ +   ++   E    PTIGV+           +++   WDTAGQ
Sbjct: 14  SFKILLIGDSGVGKSSLLVSFISSSVED-LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ 72

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIV--LCGNKVDV 129
           E+F  L   YY + Q  I+++DVT R T+ N+   W +++     N   V  L GNKVD 
Sbjct: 73  ERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDR 132

Query: 130 KNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           ++ +  +++  +   ++    + E SAK+  N E+ F  LA K+   P+L
Sbjct: 133 ESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPSL 182

Length = 211

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 93.4 bits (232), Expect = 5e-24
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 17/168 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +KLV++G GG GK+    + + G F +KY+PTI       VEV       +  +      
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV-------DGQQCMLEIL 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   E++P++L GN
Sbjct: 55  DTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGN 114

Query: 126 KVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ +V  K+      R+    + E SAK+  N  + F  L R++
Sbjct: 115 KCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 94.1 bits (234), Expect = 7e-24
 Identities = 49/169 (28%), Positives = 90/169 (53%), Gaps = 15/169 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC------GKIRFYCW 67
           F+L+++GD   GK++ +KR   G F +  +PT+GV     DFF+         +I+   W
Sbjct: 3   FRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGV-----DFFSRLIEIEPGVRIKLQLW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGN 125
           DTAGQE+F  +   YY +    +++FD+T R ++++V  W  +            +L G+
Sbjct: 58  DTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGH 117

Query: 126 KVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           K D+++ RQV + +     +   ++Y E SA++  N E+ F  L +++ 
Sbjct: 118 KCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY 166

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 93.2 bits (232), Expect = 1e-23
 Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 18/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF-YCWDTA 70
              K+V+VGDGG GKT  +  +  G F ++Y PT+  E +        GKI     WDTA
Sbjct: 2   LKVKIVVVGDGGCGKTCLLMVYAQGSFPEEYVPTV-FENYVTTLQVPNGKIIELALWDTA 60

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDV 129
           GQE +  LR   Y      +I + V    +  NV   W+ ++   C   PIVL G K D+
Sbjct: 61  GQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVNHFCPGTPIVLVGLKTDL 120

Query: 130 ---KNRQVKAKQ-----VTFHRKKNL-------QYYEISAKSNYNFEKPF 164
              KN   K +      VT  + +++        Y E SAK   N ++ F
Sbjct: 121 RKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 91.3 bits (227), Expect = 3e-23
 Identities = 52/167 (31%), Positives = 84/167 (50%), Gaps = 10/167 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F ++ E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQE 62

Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++DVT   ++ ++P+W  + C    +   +P +L GNK D+
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEE-CEQHSLPNEVPRILVGNKCDL 121

Query: 130 K-NRQVKAKQVT-FHRKKNLQYYEISAK---SNYNFEKPFLYLARKL 171
           +   QV       F    ++  +E SAK    N + E  F+ LA KL
Sbjct: 122 REQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 90.7 bits (225), Expect = 5e-23
 Identities = 51/172 (29%), Positives = 88/172 (51%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEV----HPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++G F +KY+PTI       +EV      L+         
Sbjct: 2   YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEIL------- 54

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAG E+F  +RD Y  +GQ  I+++ +  + T++++      + RV   E +PI+
Sbjct: 55  ----DTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPII 110

Query: 122 LCGNKVDVK-NRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNKVD++  R+V  A+      +    + E SAKS     + F  + R++
Sbjct: 111 LVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 90.0 bits (223), Expect = 9e-23
 Identities = 49/158 (31%), Positives = 82/158 (51%), Gaps = 3/158 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           F+L+++GD G GKT  + R    EF   +  TIGV+        +  K+R   WDTAGQE
Sbjct: 1   FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KN 131
           ++  +   YY   Q   +++D+++  +Y+++  W  D+     E +  +L GNK D  + 
Sbjct: 61  RYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQK 120

Query: 132 RQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLA 168
           RQV  +Q     K+    ++E SA +N N ++ F  L 
Sbjct: 121 RQVGDEQGNKLAKEYGMDFFETSACTNKNIKESFTRLT 158

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 87.8 bits (218), Expect = 6e-22
 Identities = 39/156 (25%), Positives = 73/156 (46%), Gaps = 5/156 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            K+VIVGD   GK+T + R L  +    +Y+P             +    +F   DTAGQ
Sbjct: 2   IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCE-NIPIVLCGNKVDV 129
           E +  +R  YY   + ++ +FD+   +    + +    +++    E  +PI+L GNK+D+
Sbjct: 62  EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121

Query: 130 KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPF 164
           ++ ++K      F +        +SA++  N +  F
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 88.8 bits (220), Expect = 8e-22
 Identities = 51/161 (31%), Positives = 86/161 (53%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +   I+   WDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+ +R
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHR 126

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  + +    F ++  L + E SAK+  N E+ F+  A K+
Sbjct: 127 RAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI 167

Length = 210

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 87.6 bits (217), Expect = 2e-21
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 4/162 (2%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQ
Sbjct: 1   FKVMLVGDSGVGKTCLLVRFKDGAFLAGSFIATVGIQFTNKVVTVDGVKVKLQIWDTAGQ 60

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK- 130
           E+F  +   YY      ++++DVT + ++ N+  W  ++      ++ I+L GNK D+  
Sbjct: 61  ERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRAWLTEILEYAQSDVVIMLLGNKADMSG 120

Query: 131 NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R VK +      ++  + + E SAK+  N E  F  +A++L
Sbjct: 121 ERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKEL 162

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (216), Expect = 2e-21
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GDG  GKT+ +     G F + YEPT+  E +  D F +   +    WDTAGQE+
Sbjct: 2   KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV-FENYIHDIFVDGLAVELSLWDTAGQEE 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK--- 130
           F  LR   Y      ++ F V    + +NV + W  ++   C  + +VL   K D++   
Sbjct: 61  FDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRHHCPGVKLVLVALKCDLREPR 120

Query: 131 NRQVKAKQVTFH--------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
           N + +      +        R    +Y E SAK N    + F   AR
Sbjct: 121 NERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVNEAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 86.5 bits (214), Expect = 2e-21
 Identities = 47/158 (29%), Positives = 83/158 (52%), Gaps = 11/158 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 2   FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 62  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121

Query: 133 QVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 164
           +V    V+  R + L      +++E SAK N N ++ F
Sbjct: 122 RV----VSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 86.3 bits (214), Expect = 3e-21
 Identities = 49/165 (29%), Positives = 84/165 (50%), Gaps = 11/165 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTA 70
            K+++VG GG GK+    + +  EF + YEPT      +   LD      +++    DTA
Sbjct: 1   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD----GEEVQLNILDTA 56

Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD 128
           GQE +  +RD Y+  G+  +++F +T   ++  +  +   + RV   +N+P++L GNK D
Sbjct: 57  GQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCD 116

Query: 129 -VKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               RQV   +      +  + Y E SAK+  N +K F  L R++
Sbjct: 117 LEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREI 161

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 52/168 (30%), Positives = 91/168 (54%), Gaps = 16/168 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----TNCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F  KY+PTI       D +      +C +      D
Sbjct: 2   YKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTIE------DSYRKQIEVDCQQCMLEILD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ ++ ++      + RV   E++P++L GNK
Sbjct: 56  TAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNK 115

Query: 127 VDVKNRQVKAKQ--VTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ +V +K+      R+  N  + E SAKS  N ++ F  L R++
Sbjct: 116 CDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 85.1 bits (211), Expect = 8e-21
 Identities = 46/167 (27%), Positives = 88/167 (52%), Gaps = 12/167 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQ 72
           K++ +G+ G GK+  +KR+  G F  KY PTIG++  V  +    N  ++R   +D +G 
Sbjct: 2   KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVS-VRNK-EVRVNFFDLSGH 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------CRVCENIPIVLCGNK 126
            ++  +R+ +Y   Q  ++++DVT R +++ + +W +++          ENI +V+C NK
Sbjct: 60  PEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANK 119

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D  K+R V   +   +   K  +Y+E SA +     + F  L   +
Sbjct: 120 IDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 85.0 bits (211), Expect = 9e-21
 Identities = 48/160 (30%), Positives = 77/160 (48%), Gaps = 17/160 (10%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           LV+VGDG  GKT  +  + T  F + Y PT+  E +  D   +   +    WDTAGQE +
Sbjct: 1   LVVVGDGAVGKTCLLIVYTTNAFPEDYVPTV-FENYSADVEVDGKPVELGLWDTAGQEDY 59

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV----- 129
             LR   Y      +I F V +  +++NV   W+ ++   C N+PI+L G K+D+     
Sbjct: 60  DRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCPNVPIILVGTKLDLRNDKS 119

Query: 130 ---KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
              +  + K + VT+ + + L       +Y E SA +   
Sbjct: 120 TLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEG 159

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 83.4 bits (206), Expect = 5e-20
 Identities = 49/172 (28%), Positives = 85/172 (49%), Gaps = 25/172 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +KLV+VG GG GK+    + +   F  +Y+PTI            E   LD         
Sbjct: 6   YKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDIL------- 58

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIV 121
               DTAGQE++  +RD Y   GQ  + ++ +T+R +++ + ++   + RV +   +P++
Sbjct: 59  ----DTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMI 114

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+ + RQV   +     +   + + E SAK   N ++ F  L R++
Sbjct: 115 LVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREI 166

Length = 189

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 82.9 bits (205), Expect = 1e-19
 Identities = 55/175 (31%), Positives = 90/175 (51%), Gaps = 23/175 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF--------Y 65
            K+V++GDG +GKT+ ++R     F K Y+ TIG+     DFF+   +I           
Sbjct: 1   IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIGL-----DFFSR--RITLPGSLNVTLQ 53

Query: 66  CWDTAGQEKFGGLRDGYYIHG-QCAIIMFDVTARLTYKNVPTWHRDLCRVCEN----IPI 120
            WD  GQ+  G + D  YI+G Q   +++D+T   +++N+  W   + +V E       +
Sbjct: 54  VWDIGGQQIGGKMLDK-YIYGAQAVCLVYDITNSQSFENLEDWLSVVKKVNEESETKPKM 112

Query: 121 VLCGNKVDV-KNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           VL GNK D+  NRQV A K   F ++ +++   +SAK+       F  +A +L G
Sbjct: 113 VLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAELLG 167

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 82.4 bits (203), Expect = 2e-19
 Identities = 47/157 (29%), Positives = 88/157 (56%), Gaps = 4/157 (2%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+
Sbjct: 2   QVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NR 132
           F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R
Sbjct: 62  FNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDR 121

Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYL 167
           ++  +Q      +   +++ E SAK N+N ++ FL L
Sbjct: 122 EITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKL 158

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 81.0 bits (200), Expect = 4e-19
 Identities = 52/178 (29%), Positives = 83/178 (46%), Gaps = 37/178 (20%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---------------VEVHPLDFFTNC 59
           KLV++GDGG GKT    +     F + Y+PTI                +EV         
Sbjct: 1   KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEV--------- 51

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-- 117
                   DTAGQE++  LRD +   G+  I+++ +T+R T++ V  +   + RV +   
Sbjct: 52  -------LDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESA 104

Query: 118 --IPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +PI++ GNK D    +  + +      R+   ++ E SAK+N N E+ F  L R L
Sbjct: 105 ADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRAL 162

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 80.6 bits (199), Expect = 4e-19
 Identities = 48/169 (28%), Positives = 88/169 (52%), Gaps = 18/169 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI------GVEVHPLDFFTNCGKIRFYCW 67
           +K+V++G GG GK+    + +   F + Y+PTI       VE+                 
Sbjct: 2   YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEI-------L 54

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAG E+F  +R+ Y   GQ  ++++ VT+  +   +      + R+   +N+P+VL GN
Sbjct: 55  DTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGN 114

Query: 126 KVDVKN-RQV-KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+++ RQV +   V+  ++  N+ +YE SA+   N ++ F+ L R++
Sbjct: 115 KADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 78.6 bits (193), Expect = 2e-18
 Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 6/143 (4%)

Query: 38  FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97
           F+  Y+ TIG++      + + G +R   WDTAGQE+F  L   Y      AI+++D+T 
Sbjct: 5   FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITN 64

Query: 98  RLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISA 154
           R +++N   W +D L    +++ I L GNK D+ + R+V  ++ +   ++ N  ++E SA
Sbjct: 65  RQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSA 124

Query: 155 KSNYNFEKPFLYLARKLAGDPNL 177
           K+ +N +  F  +A KL   PNL
Sbjct: 125 KAGHNIKVLFKKIAAKL---PNL 144

Length = 176

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 79.4 bits (196), Expect = 5e-18
 Identities = 58/195 (29%), Positives = 87/195 (44%), Gaps = 44/195 (22%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW-----D 68
           +++V++G    GKT  V R L G FE++Y PTI       DF      IR   +     D
Sbjct: 1   YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE------DFHRKLYSIRGEVYQLDILD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---------- 118
           T+G   F  +R    + G   I++F +  R +++ V       CR+ E I          
Sbjct: 55  TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEV-------CRLREQILETKSCLKNK 107

Query: 119 -------PIVLCGNKVDVK-NRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 168
                  P+V+CGNK D    R+V+  +V       +N  Y+E+SAK N N ++ F  L 
Sbjct: 108 TKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALF 167

Query: 169 RKLAG-----DPNLH 178
             LA       P+LH
Sbjct: 168 -SLAKLPNEMSPSLH 181

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 77.2 bits (190), Expect = 8e-18
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 12/165 (7%)

Query: 15  KLVIVGDGGTGKTTFVKR-HLTG-EFEKKYEPTIGVEVH----PLDFFTNCGKIRFYCWD 68
           +  +VGD   GK+  V+  H  G  F+K Y  T G ++     P+   ++   +  + +D
Sbjct: 2   QCAVVGDPAVGKSALVQMFHSDGATFQKNYTMTTGCDLVVKTVPVPDTSD--SVELFIFD 59

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI--PIVLCGNK 126
           +AGQE F  + +  +       +++DVT  +++ N   W   +      +  P VL GNK
Sbjct: 60  SAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNK 119

Query: 127 VD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D    R+V A Q     +   L++YE SAK    +E PFL LAR
Sbjct: 120 CDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 77.6 bits (191), Expect = 8e-18
 Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 15/169 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT+ +     GEF ++Y PT+  E +  D   +   ++   WDTAGQE+
Sbjct: 3   KLVIVGDGACGKTSLLYVFTLGEFPEEYHPTV-FENYVTDCRVDGKPVQLALWDTAGQEE 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDV---- 129
           +  LR   Y      +I F +    + +NV T W  ++ R C N+P++L G K D+    
Sbjct: 62  YERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQEA 121

Query: 130 --KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
             K      + V   + K +       +Y E SA +    +  F    R
Sbjct: 122 VAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEGVDDVFEAATR 170

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 77.4 bits (190), Expect = 9e-18
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 2/120 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQ
Sbjct: 3   SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQTAVDGRTVSLNLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      II F + +  +Y+NV   WH ++C  C N+PI+L G K D++N
Sbjct: 62  EEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 76.5 bits (188), Expect = 2e-17
 Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K ++VGD   GK   +     G  E  Y   +G++        +  +++   WDT+GQ 
Sbjct: 7   LKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQG 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NR 132
           +F  +   Y    Q  I+++D+T R ++  +  W +++      +P +L GN++ +   R
Sbjct: 67  RFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKR 126

Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
           QV  +Q   +  +  + ++E+S   N+N  + F  LAR +     L     P  +PP+
Sbjct: 127 QVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV-----LMRHGRPPQSPPQ 179

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 48/170 (28%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VGD   GKT  + R     F+K Y+ TIGV+     F           WDTAGQE+
Sbjct: 2   KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEVLGVPFSLQLWDTAGQER 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP----IVLCGNKVDVK 130
           F  +   YY   Q  II+FD+T   + ++   W  D  +  EN P    + L G K D+ 
Sbjct: 62  FKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALK--ENDPSSVLLFLVGTKKDLS 119

Query: 131 N----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPN 176
           +      ++   +   R+   +Y+ +SA +  N  + F +    L  +  
Sbjct: 120 SPAQYALMEQDAIKLAREMKAEYWAVSALTGENV-RDFFFRVASLTFELG 168

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 76.0 bits (187), Expect = 4e-17
 Identities = 57/188 (30%), Positives = 89/188 (47%), Gaps = 16/188 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +LV +G  G GKT  ++R L   FE K+  T+  E+H  ++     K+     DT+G   
Sbjct: 1   RLVFMGAAGVGKTALIQRFLYDTFEPKHRRTVE-ELHSKEYEVAGVKVTIDILDTSGSYS 59

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVD-VKN 131
           F  +R     +G    +++ V    +++ V     ++  V E+  +PIV+ GNK+D +  
Sbjct: 60  FPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAE 119

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL---- 185
           RQV+A     T     N  + E SAK N N  + F    ++L    NL    SPAL    
Sbjct: 120 RQVEAADALSTVELDWNNGFVEASAKDNENVTEVF----KELLQQANLPSWLSPALRRRR 175

Query: 186 --APPEVQ 191
             AP E+Q
Sbjct: 176 ESAPSEIQ 183

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 25/173 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIR 63
           +K+V++G GG GK+    + ++  F   ++PTI            E   LD         
Sbjct: 3   YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKTQARIDNEPALLDIL------- 55

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
               DTAGQ +F  +RD Y   G+  II + VT R +++    +   + RV   E+IP+V
Sbjct: 56  ----DTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLV 111

Query: 122 LCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
           L GNKVD++  RQV  ++     R+ N  ++E SA   +  +  F  L R++ 
Sbjct: 112 LVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIR 164

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 52/193 (26%), Positives = 92/193 (47%), Gaps = 16/193 (8%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           K+V++G    GKT+ V+R++   F    Y+ TIG              +    WDTAG E
Sbjct: 2   KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           ++  +   YY   + AI+ +D+T   +++    W ++L  + E+  I LCG K D+  + 
Sbjct: 62  RYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQD 121

Query: 134 VKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE-SPALA 186
              +QV FH  ++       Q++E S+K+  N ++ F    +K+A D    FV  +    
Sbjct: 122 RSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAED----FVSRANNQM 173

Query: 187 PPEVQIDLAAQQQ 199
             E  +DL  ++ 
Sbjct: 174 NTEKGVDLGQKKN 186

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 17/159 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 3   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N  
Sbjct: 62  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 121

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
                  ++K + V     + +        Y E SAK+ 
Sbjct: 122 HTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 69.7 bits (171), Expect = 1e-15
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD G+GK++ + + + GEF  +     G  +       +        WD  G+E+
Sbjct: 1   KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTGLLNIWDFGGREE 60

Query: 75  FGGLRDGYYIHGQC--AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNK 126
                +           ++++D+T R +   V     W  +L ++   IP++L GNK
Sbjct: 61  L--KFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 69.9 bits (171), Expect = 4e-15
 Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 11/159 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++V+ G GG GK++ V R + G F + Y PTI      +    +C K        DT G
Sbjct: 2   YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV---ISCSKSICTLQITDTTG 58

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR----VCENIPIVLCGNKV 127
             +F  ++      G   I+++ +T++ + + +   +  +C       E IPI+L GNK 
Sbjct: 59  SHQFPAMQRLSISKGHAFILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKC 118

Query: 128 D-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           D   +R+V + +     R  N  + E SAK+N+N ++ F
Sbjct: 119 DESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 46/162 (28%), Positives = 79/162 (48%), Gaps = 21/162 (12%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------VEVHPLDFFTNCGKIRFYCWD 68
           K+ ++G    GK++   + + G F + Y PTI       +     ++  +   +     D
Sbjct: 3   KIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIITYKGQEY--HLEIV-----D 55

Query: 69  TAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCG 124
           TAGQ+++  L   Y   IHG   I+++ VT+R +++ V   +  +  +   E++PIVL G
Sbjct: 56  TAGQDEYSILPQKYSIGIHG--YILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVG 113

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D+   RQV A++           + E SAK N N E+ F
Sbjct: 114 NKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAF 155

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 2/146 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 1   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 59

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 60  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSN 157
            +   +++   +   + Y +  A + 
Sbjct: 120 DKDTIEKLKEKKLTPITYPQGLAMAK 145

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 67.5 bits (165), Expect = 4e-14
 Identities = 34/118 (28%), Positives = 56/118 (47%), Gaps = 2/118 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  ++      F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVLVGDSQCGKTALLQVFAKDSFPENYVPTV-FENYTASFEVDKQRIELSLWDTSGSPY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N P++L G K D++ 
Sbjct: 62  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFCPNTPVLLVGCKSDLRT 119

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 65.5 bits (160), Expect = 2e-13
 Identities = 45/171 (26%), Positives = 75/171 (43%), Gaps = 27/171 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V+VGDG  GKT+ +  + T  +  +Y PT        D F+     +   +R    DT
Sbjct: 2   KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPT------AFDNFSVVVLVDGKPVRLQLCDT 55

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQ++F  LR   Y      ++ F V    +++N+   W  ++ +     PI+L G + D
Sbjct: 56  AGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQAD 115

Query: 129 --------VKNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   ++  +   K V+  R K L       +Y E SA +  N ++ F
Sbjct: 116 LRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQKNLKEVF 166

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 61.8 bits (151), Expect = 3e-12
 Identities = 33/163 (20%), Positives = 68/163 (41%), Gaps = 18/163 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           +++++G  G GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 1   RILMLGLDGAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNVKFTVWDVGGQDK 55

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   YY +    I + D + R   + +     +L ++         P+++  NK D+
Sbjct: 56  IRPLWKHYYENTDGLIFVVDSSDR---ERIEEAKNELHKLLNEEELKGAPLLILANKQDL 112

Query: 130 KNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                +++      +   + +       SA +    ++   +L
Sbjct: 113 PGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGLDWL 155

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206664 cd01874, Cdc42, cell division cycle 42 (Cdc42) is a small GTPase of the Rho family

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 22/130 (16%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 1   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLF------ 54

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 55  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 109

Query: 122 LCGNKVDVKN 131
           L G ++D+++
Sbjct: 110 LVGTQIDLRD 119

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addition, Cdc42 has been implicated in a number of human diseases through interactions with its regulators and downstream effectors. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 62.2 bits (151), Expect = 3e-12
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 12/123 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDT 69
           K V VGDG  GKT  +  + +  F   Y PT+       D F+     +   +    WDT
Sbjct: 3   KCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV------FDNFSANVVVDGNTVNLGLWDT 56

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVD 128
           AGQE +  LR   Y      ++ F + ++ +Y+NV   W  +L      +PIVL G K+D
Sbjct: 57  AGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELRHYAPGVPIVLVGTKLD 116

Query: 129 VKN 131
           +++
Sbjct: 117 LRD 119

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 3/151 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE 73
           KL++VG GG GKT+  K+ +  +F+     T G+ V           KIR   WD  GQE
Sbjct: 3   KLMLVGQGGVGKTSLCKQLIGEKFDGDESSTHGINVQDWKIPAPERKKIRLNVWDFGGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK--N 131
            +      +       +++FD+        VP W R +       P++L G  +D     
Sbjct: 63  IYHATHQFFLTSRSLYLLVFDLRTGDEVSRVPYWLRQIKAFGGVSPVILVGTHIDESCDE 122

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
             +K              + +S K+     +
Sbjct: 123 DILKKALNKKFPAIINDIHFVSCKNGKGIAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 17/169 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+ ++GD   GKT+ + +++ GEF+++Y  T+GV            +I F  WD  GQ +
Sbjct: 2   KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQRE 61

Query: 75  FGGLRDGYYI--HGQCAII-MFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDV 129
           F    +   +      AI+ MFD+T + T  ++  W+R   R      IPI L G K D+
Sbjct: 62  F---INMLPLVCKDAVAILFMFDLTRKSTLNSIKEWYRQ-ARGFNKTAIPI-LVGTKYDL 116

Query: 130 -------KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                  +  ++  +   + +         S   + N +K F ++  K+
Sbjct: 117 FADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKFVLAKV 165

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 58.9 bits (142), Expect = 6e-11
 Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 2/152 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 7   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 65

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 66  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 125

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL 165
               +++ HR+  + Y + +  +       ++
Sbjct: 126 STLVELSNHRQTPVSYDQGANMAKQIGAATYI 157

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 36/154 (23%), Positives = 62/154 (40%), Gaps = 17/154 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           + +VG   +GKTT V    +G+F +   PT+G  +  +      G +    WD  GQ +F
Sbjct: 2   ITLVGLQNSGKTTLVNVIASGQFSEDTIPTVGFNMRKV----TKGNVTIKVWDLGGQPRF 57

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVK 130
             + + Y       + + D   R     +     +L  + E      IP+++ GNK D+ 
Sbjct: 58  RSMWERYCRGVNAIVYVVDAADRE---KLEVAKNELHDLLEKPSLEGIPLLVLGNKNDLP 114

Query: 131 NRQVKAKQVTFHRKKNLQ-----YYEISAKSNYN 159
                 + +     K++       Y ISAK   N
Sbjct: 115 GALSVDELIEQMNLKSITDREVSCYSISAKEKTN 148

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 48/193 (24%), Positives = 75/193 (38%), Gaps = 45/193 (23%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V++GD   GKT+ + R++   F K    T+G       +    G      WDTAG+E+
Sbjct: 2   KVVLLGDMNVGKTSLLHRYMERRF-KDTVSTVGGAF----YLKQWGPYNISIWDTAGREQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKN 131
           F GL   Y       I+ +DV+   + + +    R L       E+    + GNK+D+  
Sbjct: 57  FHGLGSMYCRGAAAVILTYDVSNVQSLEEL--EDRFLGLTDTANEDCLFAVVGNKLDLTE 114

Query: 132 RQVKA---------------KQVTFH----------RKKNLQ----------YYEISAKS 156
               A               +QVT            + K L            +E SAK+
Sbjct: 115 EGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKT 174

Query: 157 NYNFEKPFLYLAR 169
            YN ++ F YL  
Sbjct: 175 GYNVDELFEYLFN 187

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 56.1 bits (136), Expect = 4e-10
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 38/167 (22%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------VEVHPLDFFTNCGKIRFYC 66
           K+ ++G  G GK+    R LT  F  +YEP +         ++   +       +I    
Sbjct: 1   KIAVLGASGVGKSALTVRFLTKRFIGEYEPNLESLYSRQVTIDGEQVSL-----EI---- 51

Query: 67  WDTAGQEKFGG-------LR--DGYYIHGQCAIIMFDVTARLTYKNVPTWH---RDLCRV 114
            DT GQ++          LR  DG+       ++++ +T R ++  V       R++ + 
Sbjct: 52  QDTPGQQQNEDPESLERSLRWADGF-------VLVYSITDRSSFDVVSQLLQLIREIKKR 104

Query: 115 CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYN 159
              IP++L GNK D+ + RQV   +      +    ++E+SA  NY 
Sbjct: 105 DGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYL 151

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---NCGKIRFY--CWD 68
            K V+VGDG  GKT  +  +    F ++Y PT+       D +      G  ++    +D
Sbjct: 1   LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV------FDHYAVSVTVGGKQYLLGLYD 54

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKV 127
           TAGQE +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++
Sbjct: 55  TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLIGTQI 114

Query: 128 DVKN 131
           D+++
Sbjct: 115 DLRD 118

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 42/128 (32%), Positives = 57/128 (44%), Gaps = 25/128 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++IVG    GKTT + + L GE      PTIG  V  + +      IRF  WD  GQE
Sbjct: 16  YKVIIVGLDNAGKTTILYQFLLGEVVHT-SPTIGSNVEEIVY----KNIRFLMWDIGGQE 70

Query: 74  KFGGLRDG---YYIHGQCAIIMFDVT--ARLT------YKNVPTWHRDLCRVCENIPIVL 122
               LR     YY +    I++ D T   RL       YK +   H DL        +++
Sbjct: 71  S---LRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLA--HEDL----RKAVLLV 121

Query: 123 CGNKVDVK 130
             NK D+K
Sbjct: 122 LANKQDLK 129

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 2/117 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       + + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 3   KIVVVGDTQCGKTALLHVFAKDNYPESYVPTV-FENYTASFEIDKHRIELNMWDTSGSSY 61

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           +  +R   Y      +I FD++   T  +V   W  +    C N  +VL G K+D++
Sbjct: 62  YDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKLVLVGCKLDMR 118

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 47.3 bits (113), Expect = 7e-07
 Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 25/131 (19%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWD 68
           +I+G    GKTTF+++  T +F K Y+        PT+G+ +  ++     GK R   WD
Sbjct: 3   LILGLDNAGKTTFLEQTKT-KFSKNYKGLNPSKITPTVGLNIGTIEV----GKARLMFWD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVT--ARL-----TYKNVPTWHRDLCRVCENIPIV 121
             GQE+   L D YY      I + D T   R       ++ V   +  L    E +P++
Sbjct: 58  LGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVIN-NEAL----EGVPLL 112

Query: 122 LCGNKVDVKNR 132
           +  NK D+ + 
Sbjct: 113 VLANKQDLPDA 123

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 30/163 (18%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRF 64
           +++V++GD G GK++       G +E           YE T+ V+            +  
Sbjct: 1   YRVVLLGDSGVGKSSLANIFTAGVYEDSAYEASGDDTYERTVSVDGEEAT-------LVV 53

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
           Y  D   QE    L D     G   +I++ VT R +++        L   R  E+IPI+L
Sbjct: 54  Y--DHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIIL 111

Query: 123 CGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYN 159
            GNK D V++R+V     +A  V F    + ++ E SA   +N
Sbjct: 112 VGNKSDLVRSREVSVQEGRACAVVF----DCKFIETSAALQHN 150

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 29/124 (23%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++I+G    GKTT + +   GE      PTIG  V  + +      ++F  WD  GQ
Sbjct: 14  EMRILILGLDNAGKTTILYKLKLGEI-VTTIPTIGFNVETVTY----KNVKFTVWDVGGQ 68

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
           E    L   Y+ +    I + D   R     +     +L  +       + P+++  NK 
Sbjct: 69  ESLRPLWRNYFPNTDAVIFVVDSADR---DRIEEAKEELHALLNEEELADAPLLILANKQ 125

Query: 128 DVKN 131
           D+  
Sbjct: 126 DLPG 129

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 41/166 (24%), Positives = 72/166 (43%), Gaps = 25/166 (15%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD----- 68
            ++ ++G  G GKT  V++ L  EF ++Y PT    ++      +      +  D     
Sbjct: 1   VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQ 60

Query: 69  ----TAGQE----KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCEN- 117
               TAGQE    +F GLR+      +  I+++D+ +  ++  V    + +   R   N 
Sbjct: 61  RYPGTAGQEWMDPRFRGLRN-----SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNK 115

Query: 118 -IPIVLCGNKVDVKNRQVKAKQVTFH---RKKNLQYYEISAKSNYN 159
             PIV+ GNK D +  +   + V      +     Y E SAK N++
Sbjct: 116 EPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWH 161

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 43.5 bits (102), Expect = 1e-05
 Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++V +G  G GKTT + +    EF +   PTIG  V  +++      ++F  WD  G+ K
Sbjct: 1  RVVTLGLDGAGKTTILFKLKQDEFMQPI-PTIGFNVETVEY----KNLKFTIWDVGGKHK 55

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY++ Q  + + D + R
Sbjct: 56 LRPLWKHYYLNTQAVVFVIDSSHR 79

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 2/141 (1%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 15  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 73

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++    + + +  W  ++   C +  I+L G K D++   
Sbjct: 74  YDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILDYCPSTRILLIGCKTDLRTDL 133

Query: 134 VKAKQVTFHRKKNLQYYEISA 154
               +++  ++  + Y +  A
Sbjct: 134 STLMELSNQKQAPISYEQGCA 154

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206722 cd04157, Arl6, Arf-like 6 (Arl6) GTPase

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 15/130 (11%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++G   +GKTT +   L     +     PT+G     ++ F   G + F  +D +GQ 
Sbjct: 2   ILVLGLDNSGKTTIIN-QLKPSNAQSQNIVPTVG---FNVESFKK-GNLSFTAFDMSGQG 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW------HRDLCRVCENIPIVLCGNKV 127
           K+ GL + YY + Q  I + D + RL              H D+      IPI+   NK+
Sbjct: 57  KYRGLWEHYYKNIQGIIFVIDSSDRLRMVVAKDELELLLNHPDIKH--RRIPILFYANKM 114

Query: 128 DVKNRQVKAK 137
           D+ +     K
Sbjct: 115 DLPDALTAVK 124

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 162

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 41.2 bits (97), Expect = 9e-05
 Identities = 42/173 (24%), Positives = 74/173 (42%), Gaps = 30/173 (17%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----TIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++V++GD G GK++ +   ++ EF +         TI  +V P    T    I     DT
Sbjct: 4   RIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPT---TIV----DT 56

Query: 70  AGQEKFGGLRDGYY--IHGQCAI-IMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGN 125
           + + +    R      I     I +++ V    T + + T W   + R+   +PI+L GN
Sbjct: 57  SSRPQ---DRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGN 113

Query: 126 KVDV--KNRQVKAKQV------TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           K D+   + Q   ++        F  ++     E SAK+  N  + F Y A+K
Sbjct: 114 KSDLRDGSSQAGLEEEMLPIMNEF--REIETCVECSAKTLINVSEVF-YYAQK 163

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|177661 PLN00023, PLN00023, GTP-binding protein; Provisional

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 32/155 (20%), Positives = 56/155 (36%), Gaps = 46/155 (29%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--------------------PLD 54
           ++++VGD G GK++ V   + G    +   TIG  V                       D
Sbjct: 23  RVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERD 82

Query: 55  FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
           FF          WD +G E++   R  +Y      I + D++ R T  ++  W  +   V
Sbjct: 83  FFVE-------LWDVSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASE---V 132

Query: 115 CEN----------------IPIVLCGNKVDVKNRQ 133
                              +P ++ GNK D+  ++
Sbjct: 133 AATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKE 167

Length = 334

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+K
Sbjct: 15 RILMVGLDAAGKTTILYKLKLGESVTTI-PTIGFNVETVTY----KNISFTVWDVGGQDK 69

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY + Q  I + D   R
Sbjct: 70 IRPLWRHYYTNTQGLIFVVDSNDR 93

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 74 IRPLWRHYFQNTQGLIFVVDSNDR 97

Length = 181

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 26/170 (15%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG---VEVHPLDFFTNCGKIRFYCWDTAG 71
           KL IVG+  +GK+  V R+LTG + +   P  G    EV  +D  ++   IR    D  G
Sbjct: 2   KLGIVGNLRSGKSALVHRYLTGSYVQLESPEGGRFKKEVL-VDGQSHLLLIR----DEGG 56

Query: 72  QE--KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCG--N 125
               +F G  D         I +F +    +++ V   +  L   R    IP++L G  +
Sbjct: 57  APDAQFAGWVDA-------VIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQD 109

Query: 126 KVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   N +V    +A+Q+     K   YYE  A    N E+ F   A+K+
Sbjct: 110 AISASNPRVIDDARARQLC-ADMKRCSYYETCATYGLNVERVFQEAAQKI 158

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 37.5 bits (87), Expect = 0.002
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      ++F  WD  GQ+K
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEVVTTI-PTIGFNVETVEY----KNLKFTMWDVGGQDK 73

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   YY +    I + D   R
Sbjct: 74 LRPLWRHYYQNTNGLIFVVDSNDR 97

Length = 182

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
          ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75 FGGLRDGYYIHGQCAIIMFDVTAR 98
             L   Y+ + Q  I + D   R
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDSNDR 80

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	100.0
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	100.0
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	100.0
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	100.0
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	100.0
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	100.0
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	100.0
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	100.0
KOG0394	210	consensus Ras-related GTPase [General function pre	100.0
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	100.0
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	100.0
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	100.0
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	100.0
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	100.0
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	100.0
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	100.0
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	100.0
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	100.0
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	100.0
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	100.0
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	100.0
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	100.0
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	100.0
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	100.0
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	100.0
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	100.0
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	100.0
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	100.0
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	100.0
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	100.0
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	100.0
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	100.0
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	100.0
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	100.0
PTZ00369	189	Ras-like protein; Provisional	100.0
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	100.0
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	100.0
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.98
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.98
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.98
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.98
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.98
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.98
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.98
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.97
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.97
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.97
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.97
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.97
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.97
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.97
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.97
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.97
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.97
PLN03110	216	Rab GTPase; Provisional	99.97
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.97
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.97
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.97
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.97
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.97
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.97
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.97
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.97
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.97
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.97
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.97
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.97
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.97
PLN03108	210	Rab family protein; Provisional	99.97
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.97
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.97
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.97
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.97
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.97
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.97
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.97
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.97
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.97
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.97
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.97
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.97
PLN00223	181	ADP-ribosylation factor; Provisional	99.97
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.97
PLN03118	211	Rab family protein; Provisional	99.97
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.97
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.96
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.96
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.96
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.96
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.96
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.96
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.96
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.96
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.96
PTZ00133	182	ADP-ribosylation factor; Provisional	99.96
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.96
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.96
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.96
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.96
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.96
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.96
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.96
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.96
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.95
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.95
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.95
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.95
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.95
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.95
KOG0395	196	consensus Ras-related GTPase [General function pre	99.95
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.95
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.95
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.95
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.95
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.95
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.95
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.95
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.95
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.94
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.94
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.94
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.94
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.94
PLN00023	334	GTP-binding protein; Provisional	99.94
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.93
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.93
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.93
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.93
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.93
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.93
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.92
PRK15494	339	era GTPase Era; Provisional	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.91
PTZ00099	176	rab6; Provisional	99.91
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.91
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.9
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.9
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.9
PRK04213	201	GTP-binding protein; Provisional	99.9
COG1100	219	GTPase SAR1 and related small G proteins [General	99.89
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.89
PRK12298	390	obgE GTPase CgtA; Reviewed	99.89
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.89
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.89
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.88
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.88
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.88
COG1159	298	Era GTPase [General function prediction only]	99.88
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.88
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.88
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.88
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.88
PRK03003	472	GTP-binding protein Der; Reviewed	99.88
PRK12297	424	obgE GTPase CgtA; Reviewed	99.88
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.88
PRK00089	292	era GTPase Era; Reviewed	99.88
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.87
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.87
cd00881	189	GTP_translation_factor GTP translation factor fami	99.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.86
PRK03003	472	GTP-binding protein Der; Reviewed	99.86
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.86
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.86
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.86
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.86
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.86
COG0486	454	ThdF Predicted GTPase [General function prediction	99.86
PRK12296	500	obgE GTPase CgtA; Reviewed	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.85
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.85
KOG1673	205	consensus Ras GTPases [General function prediction	99.85
PRK11058	426	GTPase HflX; Provisional	99.85
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.85
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.85
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.84
PRK00093	435	GTP-binding protein Der; Reviewed	99.84
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.84
COG1160	444	Predicted GTPases [General function prediction onl	99.83
PRK00093	435	GTP-binding protein Der; Reviewed	99.83
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.83
PRK05433	600	GTP-binding protein LepA; Provisional	99.83
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.83
CHL00189	742	infB translation initiation factor 2; Provisional	99.83
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.82
PRK05306	787	infB translation initiation factor IF-2; Validated	99.82
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.82
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.82
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.81
PRK12317	425	elongation factor 1-alpha; Reviewed	99.81
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.81
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.81
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.81
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.8
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.8
PRK10218	607	GTP-binding protein; Provisional	99.8
COG1160	444	Predicted GTPases [General function prediction onl	99.79
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.79
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.79
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.79
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.77
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.77
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.76
COG2229	187	Predicted GTPase [General function prediction only	99.76
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.76
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.76
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.75
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.75
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.74
COG0218	200	Predicted GTPase [General function prediction only	99.74
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.74
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.74
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.73
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.73
PRK04004	586	translation initiation factor IF-2; Validated	99.72
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.72
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.72
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.72
COG1084	346	Predicted GTPase [General function prediction only	99.71
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.71
PRK12736	394	elongation factor Tu; Reviewed	99.71
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.71
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.7
PRK12735	396	elongation factor Tu; Reviewed	99.7
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.7
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.69
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.68
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.68
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.67
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.67
CHL00071	409	tufA elongation factor Tu	99.66
PRK13351	687	elongation factor G; Reviewed	99.65
COG2262	411	HflX GTPases [General function prediction only]	99.65
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.65
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.65
PLN00043	447	elongation factor 1-alpha; Provisional	99.65
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.65
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.65
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.64
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.64
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.64
PTZ00141	446	elongation factor 1- alpha; Provisional	99.63
PRK00049	396	elongation factor Tu; Reviewed	99.63
PLN03126	478	Elongation factor Tu; Provisional	99.63
PRK09602	396	translation-associated GTPase; Reviewed	99.62
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.62
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.62
COG3596	296	Predicted GTPase [General function prediction only	99.62
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.61
PLN03127	447	Elongation factor Tu; Provisional	99.6
PRK12739	691	elongation factor G; Reviewed	99.58
COG1163	365	DRG Predicted GTPase [General function prediction	99.57
PRK00007	693	elongation factor G; Reviewed	99.57
COG0536	369	Obg Predicted GTPase [General function prediction	99.57
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.57
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.56
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.55
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.54
KOG1145	683	consensus Mitochondrial translation initiation fac	99.53
PRK09866	741	hypothetical protein; Provisional	99.51
PRK12740	668	elongation factor G; Reviewed	99.49
KOG0090	238	consensus Signal recognition particle receptor, be	99.48
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.47
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.45
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.44
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.44
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.42
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.42
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.42
PRK13768	253	GTPase; Provisional	99.41
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	99.41
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	99.39
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.38
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.36
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.35
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.35
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.35
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.32
PTZ00416	836	elongation factor 2; Provisional	99.32
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.31
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.31
PTZ00258	390	GTP-binding protein; Provisional	99.3
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.3
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	99.3
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.3
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.3
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	99.29
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.29
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.28
PRK14845	1049	translation initiation factor IF-2; Provisional	99.27
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.27
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.26
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.26
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.26
PRK07560	731	elongation factor EF-2; Reviewed	99.25
PRK09601	364	GTP-binding protein YchF; Reviewed	99.22
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.2
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	99.2
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.2
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	99.19
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.19
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.18
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.17
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.16
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.13
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.13
KOG0082	354	consensus G-protein alpha subunit (small G protein	99.1
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.1
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.1
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.09
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.09
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	99.08
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.06
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.05
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.04
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.04
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.04
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.03
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.0
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	98.98
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.97
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.97
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.97
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	98.97
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.95
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.94
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.94
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.94
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.93
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.93
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.92
COG5019	373	CDC3 Septin family protein [Cell division and chro	98.92
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.92
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.92
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.91
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.91
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.91
KOG2486	320	consensus Predicted GTPase [General function predi	98.9
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.9
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.9
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	98.89
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	98.88
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.88
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.88
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.87
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.87
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.87
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.87
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.87
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.87
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.87
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.86
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.86
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.86
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.86
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.86
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.85
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.85
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.85
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	98.85
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.84
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.84
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	98.84
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.84
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.84
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.84
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.83
PRK12289	352	GTPase RsgA; Reviewed	98.83
COG0050	394	TufB GTPases - translation elongation factors [Tra	98.83
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.83
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.83
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.82
KOG0410	410	consensus Predicted GTP binding protein [General f	98.82
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.82
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.82
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.82
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.82
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.81
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.81
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.81
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.81
PRK10908	222	cell division protein FtsE; Provisional	98.81
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.8
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.8
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.8
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.8
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.8
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.8
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.8
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.8
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.8
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.8
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.8
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.79
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.79
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.79
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.79
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.79
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.79
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.78
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.78
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.78
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.78
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.78
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.77
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.77
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.77
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.77
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.77
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.77
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.77
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.77
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.76
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.76
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.76
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.76
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.76
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.76
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.76
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.76
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.75
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.75
COG1161	322	Predicted GTPases [General function prediction onl	98.75
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.75
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.75
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.75
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.74
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.74
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.74
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.74
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.74
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.74
PRK00098	298	GTPase RsgA; Reviewed	98.74
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.74
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.74
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.73
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.73
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.73
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.73
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.73
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.73
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.73
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.73
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.73
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.72
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.72
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.72
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.72
cd03246	173	ABCC_Protease_Secretion This family represents the	98.72
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.72
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.71
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.71
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.71
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
COG0488	530	Uup ATPase components of ABC transporters with dup	98.7
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.7
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.7
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.7
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.7
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.7
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.7
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.7
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.69
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.69
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.69
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.69
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.69
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.69
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.68
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.68
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.68
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.68
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.68
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.68
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.68
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.67
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.67
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.67
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.67
COG4988	559	CydD ABC-type transport system involved in cytochr	98.66
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.66
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.66
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.66
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.66
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.66
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.66

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3.9e-39  Score=241.06  Aligned_cols=218  Identities=99%  Similarity=1.562  Sum_probs=195.6

Q ss_pred             CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      |++|+++..+...+||+++|.+|||||||+++++.+.+...+.++.|.++....+..++..+.+.+|||+|++.+..++.
T Consensus         1 ~~~~~~~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~   80 (219)
T PLN03071          1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (219)
T ss_pred             CCCcccCCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence            89999999999999999999999999999999999999888999999998888877777789999999999999999999


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      .+++.++++++|||++++.+|..+..|+..+.....+.|+++|+||+|+.++....+...++...++.|+++||++|.|+
T Consensus        81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~i  160 (219)
T PLN03071         81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (219)
T ss_pred             HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCCHHHHHHHHhcCCEEEEcCCCCCCCH
Confidence            99999999999999999999999999999998777789999999999997655544445677778899999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD  218 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      +++|.+|++.+....+...++.|...++....+....+...+.++..+...+.++++.
T Consensus       161 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (219)
T PLN03071        161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAAQPLPDDDDD  218 (219)
T ss_pred             HHHHHHHHHHHHcCcchhcccccccCCcccCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            9999999999998887777888888888888889999999998888887777666553

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=100.00  E-value=3.9e-37  Score=230.28  Aligned_cols=210  Identities=78%  Similarity=1.296  Sum_probs=189.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .....+||+++|++|||||||+++++.+.+...+.++.+.++....+..+++.+.+.+|||+|++.+..++..++..+++
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~   84 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQC   84 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCE
Confidence            35677999999999999999999889999888889999998888888888889999999999999888888889999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +++|||+++..++..+..|+..+.....+.|+++++||+|+.++....+...+....++.++++|+++|.|++++|.+|+
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia  164 (215)
T PTZ00132         85 AIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLA  164 (215)
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            99999999999999999999888776678999999999998765555555567777888999999999999999999999


Q ss_pred             HHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607          169 RKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD  218 (221)
Q Consensus       169 ~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      +.+..+|++.++|||+..+.+..+++.......+.+++++.-++++++|+
T Consensus       165 ~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~~~~~~~~~~  214 (215)
T PTZ00132        165 RRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAANVPLPDDDDD  214 (215)
T ss_pred             HHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhhCCCCCCcCC
Confidence            99999999999999996666666999999999999999998899888775

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-37  Score=217.08  Aligned_cols=172  Identities=33%  Similarity=0.580  Sum_probs=158.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.|||+++|++|||||+|+.||..+.+...+..|+|+++......++++.+.+++|||+|+++++++..+||++++++|
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii   86 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII   86 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence            36799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCe-EEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~-~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||+++..||+++..|+.++..+. .++|.++|+||+|+.+.. + .+++..++...+++ ++++||+++.++++.|..
T Consensus        87 ~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~~F~~  166 (205)
T KOG0084|consen   87 FVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVEDAFLT  166 (205)
T ss_pred             EEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHHHHHH
Confidence            9999999999999999999998886 577999999999997643 3 34566899999999 999999999999999999


Q ss_pred             HHHHHhCCCCCccccC
Q 027607          167 LARKLAGDPNLHFVES  182 (221)
Q Consensus       167 l~~~l~~~~~~~~~~e  182 (221)
                      |+..+..........+
T Consensus       167 la~~lk~~~~~~~~~~  182 (205)
T KOG0084|consen  167 LAKELKQRKGLHVKWS  182 (205)
T ss_pred             HHHHHHHhcccCCCCC
Confidence            9999988776665554

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.1e-36  Score=208.94  Aligned_cols=165  Identities=33%  Similarity=0.584  Sum_probs=151.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ..++||+++|..+||||||+.|+..+.|.....+|+|..+......++...+.+.||||+|+++++++...||++++++|
T Consensus         3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AAi   82 (200)
T KOG0092|consen    3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAAI   82 (200)
T ss_pred             cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEEE
Confidence            46799999999999999999999999999989999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||+++.+||..++.|+..+.... +++-+.+|+||+|+.+ +. ..+++..++...+..++++||++|.|++++|..|
T Consensus        83 vvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~I  162 (200)
T KOG0092|consen   83 VVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAI  162 (200)
T ss_pred             EEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHH
Confidence            9999999999999999999998765 4566778999999977 33 3456778999999999999999999999999999


Q ss_pred             HHHHhCCC
Q 027607          168 ARKLAGDP  175 (221)
Q Consensus       168 ~~~l~~~~  175 (221)
                      ++.+....
T Consensus       163 a~~lp~~~  170 (200)
T KOG0092|consen  163 AEKLPCSD  170 (200)
T ss_pred             HHhccCcc
Confidence            99886654

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.7e-34  Score=211.29  Aligned_cols=187  Identities=82%  Similarity=1.325  Sum_probs=159.9

Q ss_pred             EcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCCh
Q 027607           19 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR   98 (221)
Q Consensus        19 ~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~   98 (221)
                      +|.+|||||||+++++.+.+...+.++.|.++....+.++++.+.+.+|||+|++.+..++..++++++++++|||+++.
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~   80 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTAR   80 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCCh
Confidence            69999999999999999998888889999999888888888899999999999999999999999999999999999999


Q ss_pred             hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCc
Q 027607           99 LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus        99 ~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      .+|..+..|+..+.....+.|+++|+||+|+..+.+..+...++...++.++++||++|.|+.++|.+|++.+.....+.
T Consensus        81 ~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~  160 (200)
T smart00176       81 VTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLE  160 (200)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhcccce
Confidence            99999999999998877789999999999987665555556777788899999999999999999999999998876655


Q ss_pred             cccCCCCCCCccccchHHHHHHHHHHH
Q 027607          179 FVESPALAPPEVQIDLAAQQQHEAELA  205 (221)
Q Consensus       179 ~~~ep~~~~~~~~~~~~~~~~~~~~~~  205 (221)
                      ...-|...+.....++...+...+.+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (200)
T smart00176      161 FVAMPALAPPEVVMDPALAAQYEHDLE  187 (200)
T ss_pred             eccCcccCCcccccChhhhhhhhHHHH
Confidence            555555555554455555555555444

Ran is involved in the active transport of proteins through nuclear pores.

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.3e-35  Score=207.50  Aligned_cols=168  Identities=30%  Similarity=0.586  Sum_probs=155.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .-.+-+||+++|++|||||+|+.++..+.+...+..++|+++...++.+++..+.+++|||+|+++++.+...|++.+++
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~g   87 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMG   87 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCe
Confidence            44567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +++|||+++..||+++..|+..+..+. +.+|.++|+||+|+.. +.+. +...+++.+.++.++++||++|.|+.+.|.
T Consensus        88 i~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~  167 (207)
T KOG0078|consen   88 ILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFL  167 (207)
T ss_pred             eEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHH
Confidence            999999999999999999999999886 4899999999999976 3343 445689999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 027607          166 YLARKLAGDPN  176 (221)
Q Consensus       166 ~l~~~l~~~~~  176 (221)
                      .|++.+....+
T Consensus       168 ~La~~i~~k~~  178 (207)
T KOG0078|consen  168 SLARDILQKLE  178 (207)
T ss_pred             HHHHHHHhhcc
Confidence            99999986443

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=6.1e-35  Score=197.57  Aligned_cols=167  Identities=31%  Similarity=0.549  Sum_probs=154.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|.+|+|||||+.++..+.+.+....++|+++..+...++++...+-+|||+|+++++.+...||+.+.++|+
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIl   89 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGIIL   89 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeEE
Confidence            45999999999999999999999999998888889999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||++.+.+|.++..|.+++..++.  ++-.++|+||+|... + ...++...+++++++-++++||++..|++.+|+.+
T Consensus        90 VYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~~Feel  169 (209)
T KOG0080|consen   90 VYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQCCFEEL  169 (209)
T ss_pred             EEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHHHHHHH
Confidence            9999999999999999999998874  555679999999873 3 34557789999999999999999999999999999


Q ss_pred             HHHHhCCCCCc
Q 027607          168 ARKLAGDPNLH  178 (221)
Q Consensus       168 ~~~l~~~~~~~  178 (221)
                      +..+++.|.+.
T Consensus       170 veKIi~tp~l~  180 (209)
T KOG0080|consen  170 VEKIIETPSLW  180 (209)
T ss_pred             HHHHhcCcchh
Confidence            99999988755

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.2e-35  Score=203.96  Aligned_cols=167  Identities=31%  Similarity=0.560  Sum_probs=150.6

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+|++++|+.+||||||+++++.+.+...|..|+|.++...++.+.+..+++++|||+|+++++.+...|++++.
T Consensus        17 ~~~~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~   96 (221)
T KOG0094|consen   17 GAPLKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSS   96 (221)
T ss_pred             CccceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCe
Confidence            45567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ++|+|||+++..||++..+|+..+.....  .+-+++|+||.|+.+. +. ..+....+.+++..|+++|++.|.|+..+
T Consensus        97 vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~l  176 (221)
T KOG0094|consen   97 VAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQL  176 (221)
T ss_pred             EEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHH
Confidence            99999999999999999999999987753  4667799999999763 33 33455788889999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027607          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |..|+.++...
T Consensus       177 FrrIaa~l~~~  187 (221)
T KOG0094|consen  177 FRRIAAALPGM  187 (221)
T ss_pred             HHHHHHhccCc
Confidence            99988876554

>cd04121 Rab40 Rab40 subfamily

Probab=100.00  E-value=2.5e-34  Score=209.92  Aligned_cols=165  Identities=22%  Similarity=0.498  Sum_probs=147.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~ill   84 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL   84 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEE
Confidence            45999999999999999999999998888888888888877778888888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |||++++.+|+.+..|+..+....++.|+++|+||+|+... .+ ..+...++...++.++++||++|.|++++|++|++
T Consensus        85 VfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~  164 (189)
T cd04121          85 VYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR  164 (189)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999999999999877789999999999999642 33 34566788888999999999999999999999999


Q ss_pred             HHhCCCC
Q 027607          170 KLAGDPN  176 (221)
Q Consensus       170 ~l~~~~~  176 (221)
                      .+.....
T Consensus       165 ~i~~~~~  171 (189)
T cd04121         165 IVLMRHG  171 (189)
T ss_pred             HHHHhcC
Confidence            8876544

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=100.00  E-value=3.2e-34  Score=198.50  Aligned_cols=166  Identities=31%  Similarity=0.642  Sum_probs=151.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ...+||.++|++|+|||||+|+|..++|...+..|+|.++-.+.+.+++..+.+++|||+|++++.++...+|+.+|+++
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCv   86 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCV   86 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEE
Confidence            45599999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCC---ccccH-HHHHHHhhc-CCeEEEecccCCCCh
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNF  160 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~---~~~~~-~~~~~~~~~-~~~~~~~s~~~~~gv  160 (221)
                      +|||++++.||+.+..|..++..+.     ...|+++++||+|+.+   +.+.. ++..||... +++|+++||+...|+
T Consensus        87 lvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~NV  166 (210)
T KOG0394|consen   87 LVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEATNV  166 (210)
T ss_pred             EEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccccH
Confidence            9999999999999999999987664     3689999999999965   55544 466888765 589999999999999


Q ss_pred             HHHHHHHHHHHhCCCC
Q 027607          161 EKPFLYLARKLAGDPN  176 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~  176 (221)
                      .++|+.+++..+.+..
T Consensus       167 ~~AFe~ia~~aL~~E~  182 (210)
T KOG0394|consen  167 DEAFEEIARRALANED  182 (210)
T ss_pred             HHHHHHHHHHHHhccc
Confidence            9999999998877664

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-34  Score=200.88  Aligned_cols=165  Identities=32%  Similarity=0.541  Sum_probs=154.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+|+.++|+.|||||+|+.++..+.|.+.+..|+|+++-...+.++++.+.+++|||+|++.+++....||+.+.+++
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal   83 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL   83 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||++.+++|..+..|+..+.++. ++..+++++||+|+..++  ..+|..+++.++++.++++||+++.|++++|..+
T Consensus        84 LVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~nt  163 (216)
T KOG0098|consen   84 LVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFINT  163 (216)
T ss_pred             EEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHHHH
Confidence            9999999999999999999999985 899999999999997543  3456679999999999999999999999999999


Q ss_pred             HHHHhCCC
Q 027607          168 ARKLAGDP  175 (221)
Q Consensus       168 ~~~l~~~~  175 (221)
                      ++.+++.-
T Consensus       164 a~~Iy~~~  171 (216)
T KOG0098|consen  164 AKEIYRKI  171 (216)
T ss_pred             HHHHHHHH
Confidence            99887643

>cd04133 Rop_like Rop subfamily

Probab=100.00  E-value=2e-33  Score=203.06  Aligned_cols=158  Identities=28%  Similarity=0.475  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|+|||||+.+++.+.+...+.+|.+..+ ...+.+++..+.+.+|||+|++.+..++..++++++++++||
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvy   80 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF   80 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEEE
Confidence            6899999999999999999999999888899998655 455677888899999999999999999999999999999999


Q ss_pred             ECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc------------cccHHHHHHHhhcCC-eEEEecccCCCC
Q 027607           94 DVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR------------QVKAKQVTFHRKKNL-QYYEISAKSNYN  159 (221)
Q Consensus        94 d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~-~~~~~s~~~~~g  159 (221)
                      |++++.||+.+ ..|+..+....++.|+++|+||+|+.+.            ....+...++...++ .++++||++|.|
T Consensus        81 d~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~n  160 (176)
T cd04133          81 SLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQN  160 (176)
T ss_pred             EcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccC
Confidence            99999999998 6899998777678999999999998643            223456678888887 699999999999


Q ss_pred             hHHHHHHHHHHHh
Q 027607          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 v~~~~~~l~~~l~  172 (221)
                      ++++|..+++.+.
T Consensus       161 V~~~F~~~~~~~~  173 (176)
T cd04133         161 VKAVFDAAIKVVL  173 (176)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999999763

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=100.00  E-value=2.7e-33  Score=201.37  Aligned_cols=164  Identities=87%  Similarity=1.432  Sum_probs=146.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.+.........++.+.+.+|||+|++.+..++..++..+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMF   80 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEEE
Confidence            58999999999999999999988888888889988887777777778899999999999999888889999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      |+++..++..+..|+..+.....+.|+++|+||+|+.++....+...++...++.++++||++|.|++++|++|++.+.+
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~~  160 (166)
T cd00877          81 DVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLG  160 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHHHh
Confidence            99999999999999999988777899999999999976655555556677778899999999999999999999999987


Q ss_pred             CCCC
Q 027607          174 DPNL  177 (221)
Q Consensus       174 ~~~~  177 (221)
                      .|++
T Consensus       161 ~~~~  164 (166)
T cd00877         161 NPNL  164 (166)
T ss_pred             cccc
Confidence            7654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04120 Rab12 Rab12 subfamily

Probab=100.00  E-value=2.2e-33  Score=206.82  Aligned_cols=161  Identities=29%  Similarity=0.602  Sum_probs=141.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +.|+++|..|||||||++++..+.+...+.++.+.++....+.+++..+.+.+|||+|++.++.++..|++++|++++||
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf   80 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY   80 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence            46999999999999999999999998888899998888888888888899999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhc-CCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |++++.+|+.+..|+..+.... .+.|+++|+||+|+.+ +.+. .+...++... ++.++++||++|.|+.++|.++++
T Consensus        81 Dvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~  160 (202)
T cd04120          81 DITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVD  160 (202)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHH
Confidence            9999999999999998887654 5799999999999864 3333 3344566554 788999999999999999999999


Q ss_pred             HHhCC
Q 027607          170 KLAGD  174 (221)
Q Consensus       170 ~l~~~  174 (221)
                      .+...
T Consensus       161 ~~~~~  165 (202)
T cd04120         161 DILKK  165 (202)
T ss_pred             HHHHh
Confidence            88664

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=100.00  E-value=4.1e-33  Score=202.59  Aligned_cols=160  Identities=24%  Similarity=0.404  Sum_probs=141.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus         4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il   82 (182)
T cd04172           4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI   82 (182)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence            679999999999999999999999999888888887554 4567788888999999999999999999999999999999


Q ss_pred             EEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEeccc
Q 027607           92 MFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAK  155 (221)
Q Consensus        92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~  155 (221)
                      |||++++.||+.+ ..|+..+....++.|+++|+||+|+.+.              ....+..+++...++ .|++|||+
T Consensus        83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk  162 (182)
T cd04172          83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL  162 (182)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence            9999999999997 7999999887788999999999998531              233467788888885 89999999


Q ss_pred             CCCC-hHHHHHHHHHHHh
Q 027607          156 SNYN-FEKPFLYLARKLA  172 (221)
Q Consensus       156 ~~~g-v~~~~~~l~~~l~  172 (221)
                      +|.| ++++|..++++..
T Consensus       163 ~~~n~v~~~F~~~~~~~~  180 (182)
T cd04172         163 QSENSVRDIFHVATLACV  180 (182)
T ss_pred             CCCCCHHHHHHHHHHHHh
Confidence            9998 9999999998654

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=100.00  E-value=2.3e-34  Score=192.19  Aligned_cols=162  Identities=33%  Similarity=0.590  Sum_probs=152.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .++.+|+|++|+|||+|+.++..+.|...|..++|.++...++.+++..+.++|||++|+++++.+...|++..+++++|
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthgv~vV   87 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVV   87 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCceEEEE
Confidence            47889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ||+++.+||.+++.|++.+...++..|-++|+||.|.+++...  .++..++...++.+|++|++.+.+++.+|..|.+.
T Consensus        88 YDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~cit~q  167 (198)
T KOG0079|consen   88 YDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCITKQ  167 (198)
T ss_pred             EECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999887654  46778999999999999999999999999999998


Q ss_pred             HhCC
Q 027607          171 LAGD  174 (221)
Q Consensus       171 l~~~  174 (221)
                      +.+.
T Consensus       168 vl~~  171 (198)
T KOG0079|consen  168 VLQA  171 (198)
T ss_pred             HHHH
Confidence            7653

>cd01875 RhoG RhoG subfamily

Probab=100.00  E-value=8.6e-33  Score=203.00  Aligned_cols=161  Identities=31%  Similarity=0.535  Sum_probs=138.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.++.++..+++++|++++
T Consensus         2 ~~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il   80 (191)
T cd01875           2 QSIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII   80 (191)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence            458999999999999999999999999888888988554 3455678888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEeccc
Q 027607           92 MFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAK  155 (221)
Q Consensus        92 v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~~  155 (221)
                      |||++++.||+.+. .|...+....++.|+++|+||.|+.+..              ...+...++...+ +.++++||+
T Consensus        81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk  160 (191)
T cd01875          81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL  160 (191)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence            99999999999996 5888777666789999999999986431              1234556777777 589999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027607          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~  173 (221)
                      +|.|++++|.++++.+..
T Consensus       161 ~g~~v~e~f~~l~~~~~~  178 (191)
T cd01875         161 NQDGVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999998765

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>cd04131 Rnd Rnd subfamily

Probab=100.00  E-value=1.2e-32  Score=199.76  Aligned_cols=159  Identities=23%  Similarity=0.389  Sum_probs=139.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv   79 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENY-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC   79 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence            47999999999999999999999999888888887554 45677788889999999999999999999999999999999


Q ss_pred             EECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEecccC
Q 027607           93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~  156 (221)
                      ||++++.||+.+ ..|+..+....++.|+++|+||+|+.+.              ....+..+++...++ .|+++||++
T Consensus        80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~  159 (178)
T cd04131          80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT  159 (178)
T ss_pred             EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence            999999999995 7899999887789999999999998531              233466788888886 799999999


Q ss_pred             CCC-hHHHHHHHHHHHh
Q 027607          157 NYN-FEKPFLYLARKLA  172 (221)
Q Consensus       157 ~~g-v~~~~~~l~~~l~  172 (221)
                      |.| ++++|..++++..
T Consensus       160 ~~~~v~~~F~~~~~~~~  176 (178)
T cd04131         160 SEKSVRDIFHVATMACL  176 (178)
T ss_pred             CCcCHHHHHHHHHHHHh
Confidence            995 9999999998643

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=100.00  E-value=1.1e-32  Score=206.29  Aligned_cols=168  Identities=20%  Similarity=0.323  Sum_probs=145.2

Q ss_pred             CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      +..-....+||+++|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..++++
T Consensus         6 ~~~~~~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~   84 (232)
T cd04174           6 IPQPLVMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSD   84 (232)
T ss_pred             cCcCceeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeee-EEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCC
Confidence            333445789999999999999999999999999888889988665 4457778888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCC-------------cc-ccHHHHHHHhhcCC-eE
Q 027607           86 GQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN-------------RQ-VKAKQVTFHRKKNL-QY  149 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~-------------~~-~~~~~~~~~~~~~~-~~  149 (221)
                      ++++++|||+++..+|+. +..|+..+....++.|+++|+||+|+..             +. ...+...++...++ .|
T Consensus        85 ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~  164 (232)
T cd04174          85 SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY  164 (232)
T ss_pred             CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence            999999999999999998 4789999987777899999999999853             22 23467788999998 69


Q ss_pred             EEecccCCC-ChHHHHHHHHHHHhCC
Q 027607          150 YEISAKSNY-NFEKPFLYLARKLAGD  174 (221)
Q Consensus       150 ~~~s~~~~~-gv~~~~~~l~~~l~~~  174 (221)
                      ++|||++|. |++++|..++..+.+.
T Consensus       165 ~EtSAktg~~~V~e~F~~~~~~~~~~  190 (232)
T cd04174         165 LECSAFTSEKSIHSIFRSASLLCLNK  190 (232)
T ss_pred             EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence            999999997 8999999999987653

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.1e-33  Score=192.34  Aligned_cols=215  Identities=77%  Similarity=1.214  Sum_probs=203.1

Q ss_pred             CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      |.+|+..   .+.++++++|..|.||||++++.+.+.+...+.++.|...++.....+.+.+++..|||.|++.+..+..
T Consensus         1 M~~p~~~---~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrd   77 (216)
T KOG0096|consen    1 MTSPPQQ---GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRD   77 (216)
T ss_pred             CCCCccc---cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeeccccc
Confidence            6666654   7789999999999999999999999999999999999999998887777789999999999999999999


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      .|+-+..+.+++||++......++..|...+...+.++|+++++||.|...+....+...+....++.|++.|++++.+.
T Consensus        78 gyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~rkknl~y~~iSaksn~Nf  157 (216)
T KOG0096|consen   78 GYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNF  157 (216)
T ss_pred             ccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccccccccceeeecccceeEEeeccccccc
Confidence            99999999999999999999999999999999999899999999999999888777888888999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD  218 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      ..-|.|+++.+..+|.+.++..|.+.|++...+...+++.++.+...+.++++++||+
T Consensus       158 ekPFl~LarKl~G~p~Lefva~paLaPpev~~d~~~~~q~e~dl~~a~t~~lp~ed~~  215 (216)
T KOG0096|consen  158 ERPFLWLARKLTGDPSLEFVAMPALAPPEVIMDYWLQRQHEHDLAEAQTTALPDEDDK  215 (216)
T ss_pred             ccchHHHhhhhcCCCCeEEEeccccCCCeeeccchhhHHHHHHHHHHhccCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999983

>cd04122 Rab14 Rab14 subfamily

Probab=100.00  E-value=4.4e-32  Score=195.21  Aligned_cols=161  Identities=34%  Similarity=0.555  Sum_probs=141.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+++|++|||||||++++..+.+...+.++.+.+.......+++..+.+.+||++|++.+...+..++++++++++|
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   81 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   81 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEE
Confidence            48999999999999999999999988888888888888777777888889999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||++++.+|+.+..|+..+.... ++.|+++|+||+|+.... . ..+...++...++.++++||++|.|+.++|.++++
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~  161 (166)
T cd04122          82 YDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAK  161 (166)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998876653 578999999999986543 2 34556777778899999999999999999999998


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+.+
T Consensus       162 ~~~~  165 (166)
T cd04122         162 KIYQ  165 (166)
T ss_pred             HHhh
Confidence            8754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=100.00  E-value=4.5e-32  Score=200.87  Aligned_cols=163  Identities=34%  Similarity=0.593  Sum_probs=141.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+|+|++|||||||+++|+.+.+...+.++.+.++....+.++ +..+.+.+|||+|++.+..++..++++++++++|
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv   80 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV   80 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence            589999999999999999999998888888899888777777777 7789999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCcCC--ccccHHHHHHHhhcC-CeEEEecccCCCChHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~  164 (221)
                      ||++++.+|+.+..|+..+...     ..+.|+++|+||+|+.+  .....+...++...+ ..++++||++|.|++++|
T Consensus        81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f  160 (201)
T cd04107          81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM  160 (201)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence            9999999999999998877643     14789999999999963  333445567777777 689999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 027607          165 LYLARKLAGDPN  176 (221)
Q Consensus       165 ~~l~~~l~~~~~  176 (221)
                      ++|++.+.....
T Consensus       161 ~~l~~~l~~~~~  172 (201)
T cd04107         161 RFLVKNILANDK  172 (201)
T ss_pred             HHHHHHHHHhch
Confidence            999998876543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=100.00  E-value=5.4e-32  Score=197.10  Aligned_cols=161  Identities=24%  Similarity=0.405  Sum_probs=139.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.|.++....+.+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~   80 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFMF   80 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEE
Confidence            58999999999999999999999998889999998888778888888899999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-------cccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-------QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      |++++.+|..+..|+..+..... ..| ++|+||+|+...       ....+...++...++.++++||++|.|++++|.
T Consensus        81 D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~  159 (182)
T cd04128          81 DLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFK  159 (182)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            99999999999999998876543 455 688999998421       122334467777789999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027607          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      ++++.+..-+
T Consensus       160 ~l~~~l~~~~  169 (182)
T cd04128         160 IVLAKAFDLP  169 (182)
T ss_pred             HHHHHHHhcC
Confidence            9999886543

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04124 RabL2 RabL2 subfamily

Probab=100.00  E-value=1.4e-31  Score=191.63  Aligned_cols=159  Identities=31%  Similarity=0.527  Sum_probs=138.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|||||||+++++.+.+.+...++.+.+.......+++..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVF   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEE
Confidence            58999999999999999999999888777777777777777777888899999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      |++++.++..+..|+..+....++.|+++|+||+|+... ...+...++...+++++++|+++|.|+.++|+.+++.+..
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  159 (161)
T cd04124          81 DVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAVS  159 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999998776678999999999998543 2233445666678899999999999999999999987654

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=100.00  E-value=1.3e-31  Score=193.65  Aligned_cols=161  Identities=30%  Similarity=0.494  Sum_probs=138.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|.+|||||||+++++.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv   80 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC   80 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence            48999999999999999999999998877788887444 44567778888999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ||++++.+|..+..|+..+...  ..+.|+++|+||+|+.+. .+. .+...++...+++++++||++|.|++++|++|+
T Consensus        81 ~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~  160 (172)
T cd04141          81 YSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLV  160 (172)
T ss_pred             EECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999888777654  257999999999998543 333 345577777889999999999999999999999


Q ss_pred             HHHhCC
Q 027607          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+...
T Consensus       161 ~~~~~~  166 (172)
T cd04141         161 REIRRK  166 (172)
T ss_pred             HHHHHh
Confidence            987753

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd01874 Cdc42 Cdc42 subfamily

Probab=100.00  E-value=1.7e-31  Score=193.44  Aligned_cols=157  Identities=25%  Similarity=0.433  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~   80 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF   80 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence            79999999999999999999999998888888875553 44566777889999999999999999999999999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcC-CeEEEecccCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |++++.+|+.+. .|...+....++.|+++|+||+|+.+..             + ..+...++...+ +.++++||++|
T Consensus        81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg  160 (175)
T cd01874          81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ  160 (175)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence            999999999986 5888887766789999999999985421             1 223345566665 68999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027607          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~gv~~~~~~l~~~l  171 (221)
                      .|++++|+.++.+.
T Consensus       161 ~~v~~~f~~~~~~~  174 (175)
T cd01874         161 KGLKNVFDEAILAA  174 (175)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998853

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=100.00  E-value=1.4e-31  Score=191.53  Aligned_cols=157  Identities=28%  Similarity=0.542  Sum_probs=138.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.+.+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++.+|++++||
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVY   80 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEE
Confidence            58999999999999999999999998888889888887777788877889999999999999988899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |++++.+|+.+..|+..+.... .+.|+++|+||.|+....  ...+...++...+++++++||++|.|++++|.+|++.
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117          81 DISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            9999999999999999887655 378999999999986433  2345666777788999999999999999999999874

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04110 Rab35 Rab35 subfamily

Probab=100.00  E-value=2.7e-31  Score=196.39  Aligned_cols=165  Identities=32%  Similarity=0.554  Sum_probs=145.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+..++..++++++++++
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iil   84 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIV   84 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEE
Confidence            46999999999999999999999988877888898888877777777778899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |||++++.+|+.+..|+..+.......|+++|+||+|+.+...  ..+...++...++.++++|+++|.|+.++|++|.+
T Consensus        85 v~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~  164 (199)
T cd04110          85 VYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITE  164 (199)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHH
Confidence            9999999999999999999887777899999999999865432  23455667777899999999999999999999999


Q ss_pred             HHhCCCC
Q 027607          170 KLAGDPN  176 (221)
Q Consensus       170 ~l~~~~~  176 (221)
                      .+.....
T Consensus       165 ~~~~~~~  171 (199)
T cd04110         165 LVLRAKK  171 (199)
T ss_pred             HHHHhhh
Confidence            8876543

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=100.00  E-value=2.5e-31  Score=191.42  Aligned_cols=162  Identities=30%  Similarity=0.578  Sum_probs=142.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|++|||||||++++..+.+...+.++.+.++....+.+.+..+.+.+||++|++.+...+..+++++|++++
T Consensus         2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~   81 (167)
T cd01867           2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (167)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEE
Confidence            45899999999999999999999999988889999988877777788888899999999999988888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++++.+|..+..|+..+.... .+.|+++|+||+|+.+..  ...+...++...+++++++|+++|.|++++|+++.
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~  161 (167)
T cd01867          82 VYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLA  161 (167)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887654 478999999999997432  22345567777888999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       162 ~~~~~  166 (167)
T cd01867         162 KDIKK  166 (167)
T ss_pred             HHHHh
Confidence            98754

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=100.00  E-value=2.9e-31  Score=190.92  Aligned_cols=160  Identities=33%  Similarity=0.611  Sum_probs=140.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v   81 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIV   81 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEE
Confidence            48999999999999999999998888777788888887777777787788999999999999988889999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||++++.+|..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++|+++|.|+.++|.+|++
T Consensus        82 ~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~  161 (166)
T cd01869          82 YDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAR  161 (166)
T ss_pred             EECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHH
Confidence            99999999999999999887665 578999999999985432 2 24455677778899999999999999999999999


Q ss_pred             HHh
Q 027607          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       162 ~~~  164 (166)
T cd01869         162 EIK  164 (166)
T ss_pred             HHH
Confidence            775

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd01865 Rab3 Rab3 subfamily

Probab=100.00  E-value=3.1e-31  Score=190.60  Aligned_cols=159  Identities=28%  Similarity=0.573  Sum_probs=138.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||++++..+.+...+.++.+.++.......++..+.+.+||++|++.+..++..++++++++++||
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~   81 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMY   81 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEE
Confidence            79999999999999999999999988888888887777666666777789999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+++..+++.+..|+..+.... ...|+++|+||+|+.+..  ...+...++...+++++++|+++|.|+.++|+++++.
T Consensus        82 d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~  161 (165)
T cd01865          82 DITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDI  161 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            9999999999999999887664 478999999999986533  2344556677778899999999999999999999986


Q ss_pred             Hh
Q 027607          171 LA  172 (221)
Q Consensus       171 l~  172 (221)
                      +.
T Consensus       162 ~~  163 (165)
T cd01865         162 IC  163 (165)
T ss_pred             HH
Confidence            54

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.7e-32  Score=183.40  Aligned_cols=167  Identities=29%  Similarity=0.549  Sum_probs=152.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+|++++|+.|+|||+|+++++.+.+.....+++|+++....+.+.++.+.++||||+|++++++..+.||+.+-+.++
T Consensus         8 yLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlL   87 (214)
T KOG0086|consen    8 YLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALL   87 (214)
T ss_pred             hhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccceEE
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++++++|+.+..|+...+... +++-+++++||.|+.+. ++. .++..++.+..+.+.++|+++|+++++.|...+
T Consensus        88 VYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEEaFl~c~  167 (214)
T KOG0086|consen   88 VYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCA  167 (214)
T ss_pred             EEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHHHHHHHH
Confidence            999999999999999999987654 57888999999999653 333 466789999999999999999999999999999


Q ss_pred             HHHhCCCCCc
Q 027607          169 RKLAGDPNLH  178 (221)
Q Consensus       169 ~~l~~~~~~~  178 (221)
                      +.+...-+.-
T Consensus       168 ~tIl~kIE~G  177 (214)
T KOG0086|consen  168 RTILNKIESG  177 (214)
T ss_pred             HHHHHHHhhc
Confidence            9987765433

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.2e-32  Score=181.72  Aligned_cols=167  Identities=28%  Similarity=0.559  Sum_probs=151.8

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      .++.. +|++|+|+..+|||||+.+++...+.+.+..+.|.++..+++....+.+.+++|||+|+++++.+...|+++++
T Consensus        17 nFDym-fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgam   95 (193)
T KOG0093|consen   17 NFDYM-FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAM   95 (193)
T ss_pred             cccce-eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccc
Confidence            34444 69999999999999999999999999999999999999998888888999999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc-c-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-K-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~-~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++|++||++|.+||..+..|...+..++ .+.|+|+|+||+|+..++. . +....++..+|+.|+++|++.+.+++.+|
T Consensus        96 gfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~F  175 (193)
T KOG0093|consen   96 GFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVF  175 (193)
T ss_pred             eEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHH
Confidence            9999999999999999999999998776 6899999999999976543 3 45668999999999999999999999999


Q ss_pred             HHHHHHHhCCC
Q 027607          165 LYLARKLAGDP  175 (221)
Q Consensus       165 ~~l~~~l~~~~  175 (221)
                      +.+...+....
T Consensus       176 e~lv~~Ic~km  186 (193)
T KOG0093|consen  176 ERLVDIICDKM  186 (193)
T ss_pred             HHHHHHHHHHh
Confidence            99998876544

>cd04127 Rab27A Rab27a subfamily

Probab=100.00  E-value=2.8e-31  Score=193.44  Aligned_cols=162  Identities=31%  Similarity=0.554  Sum_probs=140.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec----------CcEEEEEEEecCCcccccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN----------CGKIRFYCWDTAGQEKFGGLRDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~~~D~~g~~~~~~~~~~   81 (221)
                      +.+||+++|++|||||||++++..+.+...+.++.+.++......+.          +..+.+.+||++|++.+...+..
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~   82 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA   82 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence            56999999999999999999999999988888898877776655544          35688999999999999999999


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      +++++|++++|||++++.+|..+..|+..+....  .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|
T Consensus        83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~  162 (180)
T cd04127          83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG  162 (180)
T ss_pred             HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence            9999999999999999999999999999887653  57899999999998653 22 23456778888899999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027607          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~  173 (221)
                      .|++++|++|++.+.+
T Consensus       163 ~~v~~l~~~l~~~~~~  178 (180)
T cd04127         163 TNVEKAVERLLDLVMK  178 (180)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=100.00  E-value=3.2e-31  Score=190.78  Aligned_cols=159  Identities=26%  Similarity=0.539  Sum_probs=139.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVY   80 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEE
Confidence            58999999999999999999999988888899998888888888888899999999999988888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc------CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC------ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~------~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      |++++.++..+..|+..+....      .+.|+++|+||+|+.+ .. ...+...++...+++++++|+++|.|+.++|+
T Consensus        81 D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  160 (168)
T cd04119          81 DVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQ  160 (168)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            9999999999999999887654      3689999999999863 22 23344456777788999999999999999999


Q ss_pred             HHHHHHh
Q 027607          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      +|.+.+.
T Consensus       161 ~l~~~l~  167 (168)
T cd04119         161 TLFSSIV  167 (168)
T ss_pred             HHHHHHh
Confidence            9998875

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PTZ00369 Ras-like protein; Provisional

Probab=100.00  E-value=4.3e-31  Score=193.80  Aligned_cols=163  Identities=28%  Similarity=0.527  Sum_probs=139.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+++||+++|++|||||||+++++.+.+...+.++.+.++ ...+.+++..+.+.+|||+|++.+..++..+++.+++++
T Consensus         3 ~~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii   81 (189)
T PTZ00369          3 STEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFL   81 (189)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence            4679999999999999999999999988777888887555 456677888889999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||++++.+|+.+..|+..+....  .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|+.++|.+
T Consensus        82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~  161 (189)
T PTZ00369         82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE  161 (189)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence            9999999999999999998886653  47899999999998543 22 23445566667889999999999999999999


Q ss_pred             HHHHHhCC
Q 027607          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+...
T Consensus       162 l~~~l~~~  169 (189)
T PTZ00369        162 LVREIRKY  169 (189)
T ss_pred             HHHHHHHH
Confidence            99987653

>cd01871 Rac1_like Rac1-like subfamily

Probab=100.00  E-value=4.7e-31  Score=191.01  Aligned_cols=156  Identities=28%  Similarity=0.499  Sum_probs=132.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|.+|||||||+.+++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~   80 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF   80 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence            7999999999999999999999999888888876 344445667778899999999999999999999999999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEecccCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |++++.+|..+. .|+..+....++.|+++|+||+|+.+..              ...+...++...+ +.++++||++|
T Consensus        81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  160 (174)
T cd01871          81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ  160 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence            999999999986 6888777666789999999999985421              2234456676777 48999999999


Q ss_pred             CChHHHHHHHHHH
Q 027607          158 YNFEKPFLYLARK  170 (221)
Q Consensus       158 ~gv~~~~~~l~~~  170 (221)
                      .|++++|+.+++.
T Consensus       161 ~~i~~~f~~l~~~  173 (174)
T cd01871         161 KGLKTVFDEAIRA  173 (174)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999874

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=188.99  Aligned_cols=168  Identities=30%  Similarity=0.486  Sum_probs=155.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .-.+.|||+++|++|+|||-|+.++..+.|.....+|+|++..+....++++.+..+||||+|+++++.+...||+.+-+
T Consensus        10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvG   89 (222)
T KOG0087|consen   10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVG   89 (222)
T ss_pred             ccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhcccce
Confidence            34567999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC--ccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +++|||++...+|+++..|+.+++.+. +++++++|+||+|+..  ....++...++...+..++++||+.+.++.++|.
T Consensus        90 AllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe~aF~  169 (222)
T KOG0087|consen   90 ALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVEKAFE  169 (222)
T ss_pred             eEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHHHHHH
Confidence            999999999999999999999999987 6899999999999976  3345567789999999999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 027607          166 YLARKLAGDPN  176 (221)
Q Consensus       166 ~l~~~l~~~~~  176 (221)
                      .+...++..-.
T Consensus       170 ~~l~~I~~~vs  180 (222)
T KOG0087|consen  170 RVLTEIYKIVS  180 (222)
T ss_pred             HHHHHHHHHHH
Confidence            99998876443

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.98  E-value=6.9e-31  Score=195.70  Aligned_cols=162  Identities=23%  Similarity=0.422  Sum_probs=138.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+|+|++|||||||+++|..+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv   79 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC   79 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence            479999999999999999999999998888899886554 5667788889999999999999999999999999999999


Q ss_pred             EECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEEEecccC
Q 027607           93 FDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~~~s~~~  156 (221)
                      ||++++.+|+.+ ..|...+....++.|+++|+||+|+.+.              ...++...++...++ .|++|||++
T Consensus        80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~  159 (222)
T cd04173          80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS  159 (222)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence            999999999998 4677777666778999999999998542              122355677778885 899999999


Q ss_pred             CC-ChHHHHHHHHHHHhCCC
Q 027607          157 NY-NFEKPFLYLARKLAGDP  175 (221)
Q Consensus       157 ~~-gv~~~~~~l~~~l~~~~  175 (221)
                      +. |++++|..++++.+...
T Consensus       160 ~~~~V~~~F~~~~~~~~~~~  179 (222)
T cd04173         160 SERSVRDVFHVATVASLGRG  179 (222)
T ss_pred             CCcCHHHHHHHHHHHHHhcc
Confidence            88 59999999999876643

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.98  E-value=5.9e-31  Score=189.84  Aligned_cols=159  Identities=28%  Similarity=0.466  Sum_probs=138.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|.+|||||||+++++.+.+...+.++.+.++......+.+..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   81 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFD   81 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEE
Confidence            79999999999999999999999988899999988877777888888999999999999999999999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccc----cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +++..++..+..|+..+....  ...|+++|+||.|+.+...    ..+...++...+..++++||++|.|+.++|+.|+
T Consensus        82 ~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~  161 (170)
T cd04108          82 LTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVA  161 (170)
T ss_pred             CcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999876542  3467999999999854321    2234456667788999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       162 ~~~~~  166 (170)
T cd04108         162 ALTFE  166 (170)
T ss_pred             HHHHH
Confidence            97754

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04136 Rap_like Rap-like subfamily

Probab=99.98  E-value=5.2e-31  Score=188.92  Aligned_cols=158  Identities=31%  Similarity=0.571  Sum_probs=133.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..++++++++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv   79 (163)
T cd04136           1 EYKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence            47999999999999999999999888777777776 34445566777788999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ||+++..+++.+..|+..+....  .+.|+++|+||+|+.+. ... .+...++...+.+++++||++|.|+.++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04136          80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988886643  47899999999998642 222 234456666678999999999999999999998


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       160 ~~~  162 (163)
T cd04136         160 RQI  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.98  E-value=7.1e-31  Score=188.11  Aligned_cols=158  Identities=36%  Similarity=0.701  Sum_probs=145.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+|+|++|||||||+++|..+.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++++|++++|||
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd   80 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFD   80 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEE
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            79999999999999999999999999999999999999999999999999999999999988888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      ++++.||+.+..|+..+..... ..|+++|+||.|+.+ +.+. .+...++...+.+|+++|++++.|+.++|..+++.+
T Consensus        81 ~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen   81 VTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             TTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            9999999999999999988876 699999999999876 3333 456788899999999999999999999999999976


Q ss_pred             h
Q 027607          172 A  172 (221)
Q Consensus       172 ~  172 (221)
                      .
T Consensus       161 ~  161 (162)
T PF00071_consen  161 L  161 (162)
T ss_dssp             H
T ss_pred             h
Confidence            4

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04175 Rap1 Rap1 subgroup

Probab=99.98  E-value=6.9e-31  Score=188.60  Aligned_cols=159  Identities=30%  Similarity=0.547  Sum_probs=135.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|.+|||||||+++++.+.+...+.++.+..+ .....+.+..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv   79 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLV   79 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEE
Confidence            47999999999999999999998888777778877544 35566777788999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ||+++..+|+.+..|+..+....  .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.+|+
T Consensus        80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~  159 (164)
T cd04175          80 YSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV  159 (164)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988886542  579999999999996533 22 233456677788999999999999999999999


Q ss_pred             HHHh
Q 027607          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       160 ~~l~  163 (164)
T cd04175         160 RQIN  163 (164)
T ss_pred             HHhh
Confidence            8653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.98  E-value=7.2e-31  Score=188.06  Aligned_cols=157  Identities=31%  Similarity=0.674  Sum_probs=137.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec--CcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++......+.  +..+.+.+|||||++.+...+..++++++++++
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~   80 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence            589999999999999999999988888888888888776666666  678899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |||++++.++..+..|+..+.....+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|.+|+.
T Consensus        81 v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106          81 VFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999988777778999999999998643 323 3455677778899999999999999999999876


Q ss_pred             H
Q 027607          170 K  170 (221)
Q Consensus       170 ~  170 (221)
                      .
T Consensus       161 ~  161 (162)
T cd04106         161 K  161 (162)
T ss_pred             h
Confidence            4

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04134 Rho3 Rho3 subfamily

Probab=99.98  E-value=1.4e-30  Score=190.99  Aligned_cols=159  Identities=31%  Similarity=0.500  Sum_probs=133.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      .||+++|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||+|++.+..++..+++.++++++||
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~   79 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF   79 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence            38999999999999999999999988877888775543 44556777789999999999999999999999999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------cHHHHHHHhhcC-CeEEEecccCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~~  157 (221)
                      |++++.+|+.+. .|+..+.....+.|+++|+||+|+.+...              ..+...++...+ +.++++||++|
T Consensus        80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~  159 (189)
T cd04134          80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN  159 (189)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence            999999999886 58888877767899999999999865321              123345555555 78999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027607          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~  173 (221)
                      .|++++|.+|++.+..
T Consensus       160 ~~v~e~f~~l~~~~~~  175 (189)
T cd04134         160 RGVNEAFTEAARVALN  175 (189)
T ss_pred             CCHHHHHHHHHHHHhc
Confidence            9999999999998764

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.97  E-value=1.8e-30  Score=185.76  Aligned_cols=158  Identities=30%  Similarity=0.561  Sum_probs=134.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.++++++|
T Consensus         1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v   79 (162)
T cd04138           1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV   79 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence            47999999999999999999999888777777776443 45566777778899999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||+++..++..+..|+..+....  .+.|+++|+||+|+.++... .+...++...+++++++|+++|.|++++|++|++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (162)
T cd04138          80 FAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVR  159 (162)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHH
Confidence            99999999999988888877653  47899999999998764433 3445666677889999999999999999999987


Q ss_pred             HH
Q 027607          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      .+
T Consensus       160 ~~  161 (162)
T cd04138         160 EI  161 (162)
T ss_pred             Hh
Confidence            54

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd01868 Rab11_like Rab11-like

Probab=99.97  E-value=1.9e-30  Score=186.48  Aligned_cols=160  Identities=33%  Similarity=0.575  Sum_probs=139.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|++|||||||+++++.+.+...+.++.+.++....+..++..+.+.+||+||++.+..++..+++.++++++
T Consensus         2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~   81 (165)
T cd01868           2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALL   81 (165)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEE
Confidence            35899999999999999999999888877788888888888888888878899999999999988888999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||+++..++..+..|+..+..... +.|+++|+||.|+... . ...+...++...++.++++||++|.|++++|++|+
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  161 (165)
T cd01868          82 VYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLL  161 (165)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence            9999999999999999998877654 5899999999998653 2 23344566667788999999999999999999998


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      ..+
T Consensus       162 ~~i  164 (165)
T cd01868         162 TEI  164 (165)
T ss_pred             HHh
Confidence            765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04176 Rap2 Rap2 subgroup

Probab=99.97  E-value=1.7e-30  Score=186.29  Aligned_cols=158  Identities=30%  Similarity=0.550  Sum_probs=133.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|.+|||||||+++++.+.+...+.++.+ ..+.....+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   79 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV   79 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence            48999999999999999999999988877777765 44556677777788899999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ||+++..+|..+..|+..+....  .+.|+++|+||+|+... ... .+...++...+++++++||++|.|+.++|.+++
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~  159 (163)
T cd04176          80 YSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIV  159 (163)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            99999999999999988887653  58999999999998542 222 234455566678999999999999999999998


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       160 ~~l  162 (163)
T cd04176         160 RQM  162 (163)
T ss_pred             Hhc
Confidence            754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.2e-31  Score=179.64  Aligned_cols=164  Identities=34%  Similarity=0.606  Sum_probs=146.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..|||+++|..|+|||+|++++..|.|++-...++|+++..+++.+++..+.+++|||+|+++++++...|++.++++|+
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahalil   85 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALIL   85 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEEE
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cccHH-HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++...+|..+..|+.++..+. .++-.|+|+||+|+.++ .+++. ...+.......|.++|++...+++++|..++
T Consensus        86 vydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf~~~a  165 (213)
T KOG0095|consen   86 VYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLFLDLA  165 (213)
T ss_pred             EEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHHHHHH
Confidence            999999999999999999998875 45566899999999775 34433 3356666677789999999999999999999


Q ss_pred             HHHhCCC
Q 027607          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      ..+....
T Consensus       166 ~rli~~a  172 (213)
T KOG0095|consen  166 CRLISEA  172 (213)
T ss_pred             HHHHHHH
Confidence            8876544

>cd01864 Rab19 Rab19 subfamily

Probab=99.97  E-value=2.4e-30  Score=185.96  Aligned_cols=159  Identities=33%  Similarity=0.604  Sum_probs=136.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||++++..+.+...+.++.+.+.....+.+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ll   81 (165)
T cd01864           2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAII   81 (165)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            46899999999999999999999888887778888877777777778777899999999999888888999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||++++.+++.+..|+..+.... .+.|+++|+||+|+.... .. .+...++...+. .++++|+++|.|++++|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l  161 (165)
T cd01864          82 AYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLM  161 (165)
T ss_pred             EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999887653 578999999999986532 22 344556666654 68999999999999999999


Q ss_pred             HHH
Q 027607          168 ARK  170 (221)
Q Consensus       168 ~~~  170 (221)
                      ++.
T Consensus       162 ~~~  164 (165)
T cd01864         162 ATE  164 (165)
T ss_pred             HHh
Confidence            875

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04109 Rab28 Rab28 subfamily

Probab=99.97  E-value=2.6e-30  Score=193.27  Aligned_cols=161  Identities=30%  Similarity=0.510  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.+.+.+.....+++ ..+.+.+|||+|++.+..++..+++++|++++|
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV   80 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV   80 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence            5899999999999999999999998888889999888877777764 478999999999999888999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ||++++.+|+.+..|+..+....    ...|+++|+||+|+.. +... .+...++...++.++++||++|.|++++|++
T Consensus        81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~  160 (215)
T cd04109          81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ  160 (215)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999887653    2468999999999863 3333 3445677778889999999999999999999


Q ss_pred             HHHHHhCC
Q 027607          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+...
T Consensus       161 l~~~l~~~  168 (215)
T cd04109         161 LAAELLGV  168 (215)
T ss_pred             HHHHHHhc
Confidence            99988754

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04118 Rab24 Rab24 subfamily

Probab=99.97  E-value=5.6e-30  Score=188.63  Aligned_cols=162  Identities=27%  Similarity=0.478  Sum_probs=139.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+|+|++|||||||+++|+.+.+.. .+.++.+.++....+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv   80 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVC   80 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEE
Confidence            589999999999999999999988864 6788888877777788888889999999999999888888899999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-----cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ||+++..+++.+..|+..+.....+.|+++|+||+|+....     .. .+...++...++.++++|+++|.|++++|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~  160 (193)
T cd04118          81 YDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQK  160 (193)
T ss_pred             EECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999887766689999999999985321     11 2344566667788999999999999999999


Q ss_pred             HHHHHhCCC
Q 027607          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |++.+...+
T Consensus       161 i~~~~~~~~  169 (193)
T cd04118         161 VAEDFVSRA  169 (193)
T ss_pred             HHHHHHHhc
Confidence            999887654

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04125 RabA_like RabA-like subfamily

Probab=99.97  E-value=3e-30  Score=189.30  Aligned_cols=162  Identities=32%  Similarity=0.591  Sum_probs=140.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|++|||||||+++++.+.+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..+++++|++++||
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~   80 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVY   80 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEE
Confidence            58999999999999999999999887778889888887777788878889999999999999889999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |++++.+|..+..|+..+.... ...|+++|+||.|+.+.. . ......++...+++++++|+++|.|++++|.+|++.
T Consensus        81 d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~  160 (188)
T cd04125          81 DVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKL  160 (188)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999999887654 468999999999986432 2 234456667778899999999999999999999999


Q ss_pred             HhCCC
Q 027607          171 LAGDP  175 (221)
Q Consensus       171 l~~~~  175 (221)
                      +....
T Consensus       161 ~~~~~  165 (188)
T cd04125         161 IIKRL  165 (188)
T ss_pred             HHHHh
Confidence            87643

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.97  E-value=4.5e-30  Score=185.06  Aligned_cols=162  Identities=31%  Similarity=0.557  Sum_probs=140.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++++.+.+...+.++.+.+.........+....+.+||++|++.+..++..+++.+|++++
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~   82 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   82 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence            35899999999999999999999888877778888888887888888888899999999999988888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|++++.++..+..|+..+.... ++.|+++|+||.|+.+. .. ..+...++...++.++++|+.++.|+.++|.+++
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~  162 (168)
T cd01866          83 VYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTA  162 (168)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999999887653 68999999999998642 22 3344566777789999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T cd01866         163 KEIYE  167 (168)
T ss_pred             HHHHh
Confidence            87643

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04116 Rab9 Rab9 subfamily

Probab=99.97  E-value=3.9e-30  Score=185.71  Aligned_cols=159  Identities=32%  Similarity=0.625  Sum_probs=137.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+++|++|||||||+++++.+.+...+.++.+.+.....+.+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~   83 (170)
T cd04116           4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLL   83 (170)
T ss_pred             eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEE
Confidence            56999999999999999999999998888778888877777777888888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcC-CeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKN-LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~  164 (221)
                      |||+++..+++.+..|...+....     .+.|+++|+||+|+..+... .+..+++...+ ..++++||++|.|+.++|
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~  163 (170)
T cd04116          84 TFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAF  163 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHH
Confidence            999999999999999988776543     36899999999998754433 34556666666 579999999999999999


Q ss_pred             HHHHHH
Q 027607          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      .++++.
T Consensus       164 ~~~~~~  169 (170)
T cd04116         164 EEAVRR  169 (170)
T ss_pred             HHHHhh
Confidence            999875

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03110 Rab GTPase; Provisional

Probab=99.97  E-value=4.1e-30  Score=192.14  Aligned_cols=172  Identities=32%  Similarity=0.525  Sum_probs=146.8

Q ss_pred             CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      |+.......+ ..+||+++|++|||||||+++|..+.+...+.++.+.++....+.+++..+.+.+||++|++.+..++.
T Consensus         1 ~~~~~~~~~~-~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~   79 (216)
T PLN03110          1 MAHRVDHEYD-YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS   79 (216)
T ss_pred             CCCCcccccC-ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence            4444444333 459999999999999999999998888777788999888888888888889999999999999999999


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCC
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      .+++.++++++|||+++..+|+.+..|+..+.... .+.|+++|+||+|+.+. ... .....++...+++++++||++|
T Consensus        80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g  159 (216)
T PLN03110         80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEA  159 (216)
T ss_pred             HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCC
Confidence            99999999999999999999999999998887664 47999999999998543 233 3445666778899999999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027607          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~  173 (221)
                      .|+.++|.+|++.+.+
T Consensus       160 ~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        160 TNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999998866

>cd04112 Rab26 Rab26 subfamily

Probab=99.97  E-value=3.4e-30  Score=189.37  Aligned_cols=162  Identities=28%  Similarity=0.580  Sum_probs=139.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+++|++|||||||++++..+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|++++|
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v   80 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLL   80 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEE
Confidence            58999999999999999999888875 35677777777666677788889999999999999988888899999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||+++..+++.+..|+..+.... ...|+++|+||+|+.. +.. ..+...+....+++++++|+++|.|++++|.+|++
T Consensus        81 ~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~  160 (191)
T cd04112          81 YDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAK  160 (191)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998887765 4789999999999853 222 34455667777889999999999999999999999


Q ss_pred             HHhCCC
Q 027607          170 KLAGDP  175 (221)
Q Consensus       170 ~l~~~~  175 (221)
                      .+....
T Consensus       161 ~~~~~~  166 (191)
T cd04112         161 ELKHRK  166 (191)
T ss_pred             HHHHhc
Confidence            987764

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.97  E-value=3.8e-30  Score=191.55  Aligned_cols=164  Identities=27%  Similarity=0.547  Sum_probs=140.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      +.+||+|+|++|||||||+++++.+.+...+.++.+.++....+.+. +..+.+.+|||+|++.+..++..+++++|+++
T Consensus         1 ~~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (211)
T cd04111           1 YQFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL   80 (211)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence            35899999999999999999999988877777888887777777664 55789999999999999888889999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||++++.+|+.+..|+..+....  ...|+++|+||+|+.+. .. ..+...++...++.++++|+++|.|+.++|++
T Consensus        81 lv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~  160 (211)
T cd04111          81 LVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFEL  160 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999999887653  35678999999998653 22 33455677778899999999999999999999


Q ss_pred             HHHHHhCCC
Q 027607          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |++.+.+..
T Consensus       161 l~~~~~~~~  169 (211)
T cd04111         161 LTQEIYERI  169 (211)
T ss_pred             HHHHHHHHh
Confidence            999887653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04113 Rab4 Rab4 subfamily

Probab=99.97  E-value=4.2e-30  Score=183.95  Aligned_cols=157  Identities=32%  Similarity=0.612  Sum_probs=138.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~   80 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEE
Confidence            58999999999999999999999988888888888888888888887889999999999988888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+++..++..+..|+..+.... ++.|+++|+||.|+....  ...+...++...++.++++|++++.|+.++|.++++.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113          81 DITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            9999999999999988876543 689999999999986432  2334556777778999999999999999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.97  E-value=3.7e-30  Score=188.65  Aligned_cols=162  Identities=30%  Similarity=0.460  Sum_probs=135.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+|+|++|||||||+++|+.+.+...+.++.+..+.. .+... +..+.+.+|||+|++.+..++..+++.+|++++|
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v   79 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVT-NIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC   79 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEE-EEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence            589999999999999999999998887777777655543 34444 5678999999999999988888899999999999


Q ss_pred             EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc------ccHHHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------VKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~  164 (221)
                      ||+++..+|+.+. .|+..+.....+.|+++|+||.|+....      ...+..+++...++ .++++|+++|.|+.++|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f  159 (187)
T cd04132          80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVF  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHH
Confidence            9999999999886 5887776666789999999999985432      23345567777777 89999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 027607          165 LYLARKLAGDPN  176 (221)
Q Consensus       165 ~~l~~~l~~~~~  176 (221)
                      ..+++.+.....
T Consensus       160 ~~l~~~~~~~~~  171 (187)
T cd04132         160 DTAIEEALKKEG  171 (187)
T ss_pred             HHHHHHHHhhhh
Confidence            999998877654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04140 ARHI_like ARHI subfamily

Probab=99.97  E-value=5.7e-30  Score=183.99  Aligned_cols=155  Identities=28%  Similarity=0.453  Sum_probs=130.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++ ..........+.+.+|||+|++.+..++..+++.++++++||
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   80 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY   80 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence            7999999999999999999999988777777776444 334555667789999999999999888888899999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |+++..++..+..|+..+....    .+.|+++|+||+|+.+ +... .+...++...++.++++||++|.|++++|++|
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l  160 (165)
T cd04140          81 SVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQEL  160 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHH
Confidence            9999999999999987776542    5789999999999865 3333 34456667778899999999999999999998


Q ss_pred             HH
Q 027607          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      +.
T Consensus       161 ~~  162 (165)
T cd04140         161 LN  162 (165)
T ss_pred             Hh
Confidence            75

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04144 Ras2 Ras2 subfamily

Probab=99.97  E-value=2.9e-30  Score=189.57  Aligned_cols=161  Identities=32%  Similarity=0.540  Sum_probs=134.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..++..+++.+|++++|||
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d   79 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS   79 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence            689999999999999999999888777777776443 3445667777889999999999999999999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +++..+|+.+..|+..+....    .+.|+++|+||+|+.. +.. ..+...++...++.++++||++|.|++++|.+++
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~  159 (190)
T cd04144          80 ITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLV  159 (190)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988876543    4789999999999854 222 2344566677788999999999999999999999


Q ss_pred             HHHhCCCC
Q 027607          169 RKLAGDPN  176 (221)
Q Consensus       169 ~~l~~~~~  176 (221)
                      +.+.....
T Consensus       160 ~~l~~~~~  167 (190)
T cd04144         160 RALRQQRQ  167 (190)
T ss_pred             HHHHHhhc
Confidence            98865443

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.97  E-value=7.1e-30  Score=184.38  Aligned_cols=159  Identities=31%  Similarity=0.592  Sum_probs=137.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-cccccccccccEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-~~~~~~~~~~d~~i~   91 (221)
                      .+||+++|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+||++|++.+. .++..+++++|++++
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~   81 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVF   81 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEE
Confidence            5899999999999999999999988887788888888888888888888999999999998776 567888999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccC---CCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKS---NYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~---~~gv~~~~  164 (221)
                      |||++++.++..+..|+..+....  .+.|+++|+||+|+.+.. .. .....++...+++++++||++   +.++.++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f  161 (170)
T cd04115          82 VYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIF  161 (170)
T ss_pred             EEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHH
Confidence            999999999999999998887653  579999999999986533 22 344566777789999999998   89999999


Q ss_pred             HHHHHHH
Q 027607          165 LYLARKL  171 (221)
Q Consensus       165 ~~l~~~l  171 (221)
                      ..+++.+
T Consensus       162 ~~l~~~~  168 (170)
T cd04115         162 MTLAHKL  168 (170)
T ss_pred             HHHHHHh
Confidence            9998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.97  E-value=8.9e-30  Score=182.69  Aligned_cols=159  Identities=33%  Similarity=0.572  Sum_probs=133.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.. ......+++..+.+.+|||||++++..++..+++.+|++++
T Consensus         1 ~~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il   79 (164)
T cd04145           1 PTYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL   79 (164)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccce-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence            35899999999999999999999888777767766633 34445677777899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||+++..++..+..|+..+....  .+.|+++|+||+|+.... .. .+...++...+++++++||++|.|++++|++|
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  159 (164)
T cd04145          80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL  159 (164)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence            999999999999999988876542  578999999999986533 22 34456666778899999999999999999999


Q ss_pred             HHHH
Q 027607          168 ARKL  171 (221)
Q Consensus       168 ~~~l  171 (221)
                      ++.+
T Consensus       160 ~~~~  163 (164)
T cd04145         160 VRVI  163 (164)
T ss_pred             HHhh
Confidence            8754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.97  E-value=1.2e-29  Score=183.81  Aligned_cols=157  Identities=29%  Similarity=0.480  Sum_probs=132.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (221)
                      |+|+|++|||||||+++++.+.+...+.++.+.. +.....+++..+.+.+|||+|++.+..++..++..+|++++|||+
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~   79 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFEN-YSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV   79 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEee-eeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence            6899999999999999999998877777776544 334566777788999999999999999999999999999999999


Q ss_pred             CChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcCC-eEEEecccCCCC
Q 027607           96 TARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEISAKSNYN  159 (221)
Q Consensus        96 ~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-~~~~~s~~~~~g  159 (221)
                      ++..+|+.+. .|+..+....++.|+++|+||+|+....              ...+...++...+. .++++|+++|.|
T Consensus        80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~  159 (174)
T smart00174       80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG  159 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            9999999886 5888887777799999999999985421              12234456777775 899999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027607          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 v~~~~~~l~~~l~~  173 (221)
                      ++++|..+++.+.+
T Consensus       160 v~~lf~~l~~~~~~  173 (174)
T smart00174      160 VREVFEEAIRAALN  173 (174)
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999987654

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.97  E-value=1.2e-29  Score=186.37  Aligned_cols=156  Identities=21%  Similarity=0.390  Sum_probs=124.4

Q ss_pred             ceEEEEEcCCCCcHHHHHH-HHhcCc-----cCCcccCCcce-eeeeeE--------EEecCcEEEEEEEecCCcccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVK-RHLTGE-----FEKKYEPTIGV-EVHPLD--------FFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~-~l~~~~-----~~~~~~~~~~~-~~~~~~--------~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      .+||+++|..|||||||+. ++..+.     +...+.+|.+. +.+...        ..+++..+.+.+|||+|++.  .
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~   79 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K   79 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence            5899999999999999995 554443     34455667652 222222        24677789999999999875  3


Q ss_pred             ccccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCC--------------------ccc-c
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--------------------RQV-K  135 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~--------------------~~~-~  135 (221)
                      ....+++++|++++|||++++.||+.+. .|+..+....++.|+++|+||+|+.+                    +.+ .
T Consensus        80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~~  159 (195)
T cd01873          80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILPP  159 (195)
T ss_pred             hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccCH
Confidence            4566899999999999999999999997 59888877667899999999999853                    222 3


Q ss_pred             HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          136 AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      .+..+++...++.|++|||++|.|++++|+.++++
T Consensus       160 ~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         160 ETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             HHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence            45678888899999999999999999999999874

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.97  E-value=1.4e-29  Score=181.57  Aligned_cols=159  Identities=33%  Similarity=0.604  Sum_probs=138.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++|
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   80 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVV   80 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999888777788888778788888888889999999999988888888899999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +|++++.++.....|+..+.... ...|+++++||+|+... . ...+...++...++.++++|+++|.|+.++|.+|++
T Consensus        81 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  160 (163)
T cd01860          81 YDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAK  160 (163)
T ss_pred             EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998887665 57899999999998632 2 233445667777899999999999999999999998


Q ss_pred             HH
Q 027607          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      .+
T Consensus       161 ~l  162 (163)
T cd01860         161 KL  162 (163)
T ss_pred             Hh
Confidence            75

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.97  E-value=1.2e-29  Score=181.95  Aligned_cols=160  Identities=34%  Similarity=0.690  Sum_probs=139.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~   80 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVY   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEE
Confidence            68999999999999999999988887777788887777777778777789999999999988888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |++++.+++.+..|+..+..+. ++.|+++|+||+|+... ... .....++...++.++++|+.+|.|+++++++|.+.
T Consensus        81 d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~  160 (164)
T smart00175       81 DITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELARE  160 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHH
Confidence            9999999999999998887765 68999999999998652 222 34556777788999999999999999999999987


Q ss_pred             HhC
Q 027607          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +..
T Consensus       161 ~~~  163 (164)
T smart00175      161 ILK  163 (164)
T ss_pred             Hhh
Confidence            643

Rab GTPases are implicated in vesicle trafficking.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.97  E-value=1.3e-29  Score=181.93  Aligned_cols=158  Identities=30%  Similarity=0.571  Sum_probs=132.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|++|||||||+++++.+.+...+.++.+ +.......+++..+.+.+|||||++++..++..+++.++++++||
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence            5899999999999999999998888776666665 333455667777889999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |++++.+++.+..|...+....  .+.|+++|+||+|+.... .. .....++...+.+++++||++|.|++++|++|++
T Consensus        80 d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~  159 (164)
T smart00173       80 SITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHH
Confidence            9999999999999988776543  368999999999986532 22 3444666777899999999999999999999998


Q ss_pred             HHh
Q 027607          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       160 ~~~  162 (164)
T smart00173      160 EIR  162 (164)
T ss_pred             HHh
Confidence            654

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>PLN03108 Rab family protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=188.68  Aligned_cols=163  Identities=32%  Similarity=0.547  Sum_probs=142.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++++.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..+++.+|++++
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl   84 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL   84 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence            46999999999999999999999888887778888888877778888888899999999999988888899999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||+++..++..+..|+..+.... ...|+++|+||+|+.... . ..+...++...++.++++|++++.|++++|++++
T Consensus        85 v~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~  164 (210)
T PLN03108         85 VYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTA  164 (210)
T ss_pred             EEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999988776543 578999999999986532 2 3455677778889999999999999999999999


Q ss_pred             HHHhCC
Q 027607          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+.++
T Consensus       165 ~~~~~~  170 (210)
T PLN03108        165 AKIYKK  170 (210)
T ss_pred             HHHHHH
Confidence            988764

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.97  E-value=1.5e-29  Score=181.66  Aligned_cols=158  Identities=27%  Similarity=0.542  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      +||+++|++|||||||++++..+  .+...+.++.|.++......+. +..+.+.+|||+|++.+..++..++..+|+++
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii   80 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI   80 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence            58999999999999999998765  5667788888888777666664 46789999999999988888889999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +|||+++..++..+..|+..+.....+.|+++|+||+|+.+.. ... +...+....++.++++|+.+|.|+.++|+.|+
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (164)
T cd04101          81 LVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLA  160 (164)
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHH
Confidence            9999999999999999998887766679999999999985432 222 23445566678899999999999999999999


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       161 ~~~  163 (164)
T cd04101         161 RAF  163 (164)
T ss_pred             HHh
Confidence            864

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04148 RGK RGK subfamily

Probab=99.97  E-value=5.8e-29  Score=186.40  Aligned_cols=167  Identities=19%  Similarity=0.297  Sum_probs=133.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc-cccEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI-HGQCAII   91 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~-~~d~~i~   91 (221)
                      +||+++|++|||||||+++|+.+.+. ..+.++.+.+.....+.+++....+.+|||+|++  ......++. .+|++++
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~iil   78 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFVV   78 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEEE
Confidence            58999999999999999998888876 6666666656667777788888999999999987  223344556 8999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||++++.+|..+..|+..+....  .+.|+++|+||+|+.+. .+. .+...++...+++++++||++|.|++++|++|
T Consensus        79 V~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l  158 (221)
T cd04148          79 VYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGI  158 (221)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            999999999999999988886653  57999999999998543 222 23446666778899999999999999999999


Q ss_pred             HHHHhCCCCCccccC
Q 027607          168 ARKLAGDPNLHFVES  182 (221)
Q Consensus       168 ~~~l~~~~~~~~~~e  182 (221)
                      ++.+.......-..+
T Consensus       159 ~~~~~~~~~~~~~~~  173 (221)
T cd04148         159 VRQIRLRRDSKEKNE  173 (221)
T ss_pred             HHHHHhhhccccccC
Confidence            998864443333344

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd01862 Rab7 Rab7 subfamily

Probab=99.97  E-value=2.4e-29  Score=181.85  Aligned_cols=161  Identities=30%  Similarity=0.624  Sum_probs=137.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||++++..+.+...+.++.+.++......+.+..+.+.+||+||++.+..++..+++.+|++++||
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVY   80 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEE
Confidence            58999999999999999999998887777788887777777778888889999999999988888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcC-----CCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcC-CeEEEecccCCCChHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-----~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~  165 (221)
                      |++++.++.....|...+.....     +.|+++|+||+|+.. .. ...+...++...+ ..++++|+++|.|++++|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~  160 (172)
T cd01862          81 DVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFE  160 (172)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHH
Confidence            99999999988888877655442     789999999999973 22 2334445656665 7899999999999999999


Q ss_pred             HHHHHHhCC
Q 027607          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+.+.
T Consensus       161 ~i~~~~~~~  169 (172)
T cd01862         161 TIARKALEQ  169 (172)
T ss_pred             HHHHHHHhc
Confidence            999987765

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04126 Rab20 Rab20 subfamily

Probab=99.97  E-value=2.8e-29  Score=186.95  Aligned_cols=155  Identities=29%  Similarity=0.477  Sum_probs=128.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|.+|||||||+++++.+.+.. +.++.+..+.....    ..+.+.+|||+|++.+..++..+++.+|++++||
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~   75 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY   75 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence            589999999999999999999998864 46677765544332    4678999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCC--------------------ccc-cHHHHHHHhhcC-----
Q 027607           94 DVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN--------------------RQV-KAKQVTFHRKKN-----  146 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~--------------------~~~-~~~~~~~~~~~~-----  146 (221)
                      |+++..+|..+..|+..+... ..+.|+++|+||+|+.+                    +.+ .++...++.+.+     
T Consensus        76 Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~~  155 (220)
T cd04126          76 DVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKML  155 (220)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCccccc
Confidence            999999999998887776554 35789999999999854                    222 234556666654     


Q ss_pred             ---------CeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          147 ---------LQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       147 ---------~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                               +.|+++||++|.|++++|..+++.+..
T Consensus       156 ~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~  191 (220)
T cd04126         156 DEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP  191 (220)
T ss_pred             cccccccccceEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence                     679999999999999999999998764

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04142 RRP22 RRP22 subfamily

Probab=99.97  E-value=5.2e-29  Score=183.54  Aligned_cols=163  Identities=20%  Similarity=0.293  Sum_probs=130.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      +||+|+|.+|||||||+++++.+.+...+.++.+.+.+...+.+++..+.+.+|||||...+...        ....+..
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~   80 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRN   80 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhcc
Confidence            58999999999999999999999887777778776666556667777789999999997543211        2234789


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCcc-ccHH-HHHHH-hhcCCeEEEecccCCC
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQ-VKAK-QVTFH-RKKNLQYYEISAKSNY  158 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~-~~~~-~~~~~-~~~~~~~~~~s~~~~~  158 (221)
                      +|++++|||++++.+|+.+..|+..+...    ..+.|+++|+||+|+.... ...+ ...++ ...+++++++||++|.
T Consensus        81 ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~  160 (198)
T cd04142          81 SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNW  160 (198)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCC
Confidence            99999999999999999999998887664    2579999999999995532 2222 22333 3467899999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027607          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~  176 (221)
                      |++++|+.+++.+....+
T Consensus       161 ~v~~lf~~i~~~~~~~~~  178 (198)
T cd04142         161 HILLLFKELLISATTRGR  178 (198)
T ss_pred             CHHHHHHHHHHHhhccCC
Confidence            999999999998876654

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd01861 Rab6 Rab6 subfamily

Probab=99.97  E-value=3e-29  Score=179.49  Aligned_cols=157  Identities=32%  Similarity=0.568  Sum_probs=135.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||+..+...+..+++.++++++||
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~   80 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEE
Confidence            48999999999999999999988887777788887888888877777789999999999999888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCC-ccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~-~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |++++.+|..+..|+..+..... +.|+++|+||+|+.+ +.... +....+...++.++++|+++|.|+++++.+|.+.
T Consensus        81 d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861          81 DITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             ECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHh
Confidence            99999999999999998866543 699999999999943 33333 3456666778999999999999999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.97  E-value=5.2e-29  Score=180.35  Aligned_cols=155  Identities=26%  Similarity=0.456  Sum_probs=130.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++. .+.+.....+++..+.+.+||++|++.+..++..+++++|++++||
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~   79 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF   79 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence            689999999999999999999988887777775 3455556777777889999999999999999999999999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcCC-eEEEecccCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      |++++.+|+.+. .|+..+....++.|+++|+||+|+...             .+. .+...++...+. .++++||++|
T Consensus        80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~  159 (173)
T cd04130          80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ  159 (173)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            999999999875 688777765568999999999998532             122 245566777776 8999999999


Q ss_pred             CChHHHHHHHHH
Q 027607          158 YNFEKPFLYLAR  169 (221)
Q Consensus       158 ~gv~~~~~~l~~  169 (221)
                      .|++++|+.++.
T Consensus       160 ~~v~~lf~~~~~  171 (173)
T cd04130         160 KNLKEVFDTAIL  171 (173)
T ss_pred             CCHHHHHHHHHh
Confidence            999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01892 Miro2 Miro2 subfamily

Probab=99.97  E-value=3.6e-29  Score=180.40  Aligned_cols=161  Identities=19%  Similarity=0.221  Sum_probs=134.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ++-+||+++|.+|||||||+++++.+.+. ..+.++.+..+....+.+++..+.+.+||++|++.+..++..++.++|++
T Consensus         2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~   81 (169)
T cd01892           2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVA   81 (169)
T ss_pred             CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEE
Confidence            46799999999999999999999999987 77888888777766777777778999999999999988889999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCC-eEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|++++.+++.+..|+..+.. ..+.|+++|+||+|+.+.. . ..+...++...++ .++++||++|.|+.++|..
T Consensus        82 llv~d~~~~~s~~~~~~~~~~~~~-~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~  160 (169)
T cd01892          82 CLVYDSSDPKSFSYCAEVYKKYFM-LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTK  160 (169)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHhcc-CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHH
Confidence            999999999999988888876532 2379999999999985432 1 2233455566666 4699999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.+.
T Consensus       161 l~~~~~  166 (169)
T cd01892         161 LATAAQ  166 (169)
T ss_pred             HHHHhh
Confidence            999765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd01863 Rab18 Rab18 subfamily

Probab=99.97  E-value=5.8e-29  Score=178.01  Aligned_cols=157  Identities=34%  Similarity=0.622  Sum_probs=136.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..+++.+|++++|+
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~   80 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVY   80 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEE
Confidence            68999999999999999999988887778888888887777777777889999999999988888888999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+++..+++.+..|+..+....  .+.|+++|+||+|+.... ...+...++...+++++++|+++|.|+.+++..+.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863          81 DVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             ECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999998887664  578999999999997433 3345556777788999999999999999999998875

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.97  E-value=2.3e-30  Score=175.05  Aligned_cols=170  Identities=26%  Similarity=0.455  Sum_probs=150.9

Q ss_pred             CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      ........|||+++|..-+|||||+-+++.++|......+..-++..+.+.+.+....+.||||+|++++..+-.-||+.
T Consensus         6 ~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRg   85 (218)
T KOG0088|consen    6 NVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRG   85 (218)
T ss_pred             cccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeC
Confidence            33444567999999999999999999999999988888888877888888888888999999999999999999999999


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++++++|||+++..||+.++.|..+++... ..+.+++|+||+|++..+  ..+++...+...+..|+++||+.+.|+.+
T Consensus        86 SnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~e  165 (218)
T KOG0088|consen   86 SNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISE  165 (218)
T ss_pred             CCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHH
Confidence            999999999999999999999999998765 467789999999997533  34567788899999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027607          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|+.|...+.+..
T Consensus       166 lFe~Lt~~MiE~~  178 (218)
T KOG0088|consen  166 LFESLTAKMIEHS  178 (218)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887755

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.97  E-value=3.9e-29  Score=178.09  Aligned_cols=150  Identities=23%  Similarity=0.367  Sum_probs=121.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+ .+ ...+.+++..+.+.+|||+|++.     ..+++.+|++++||
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~   73 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF   73 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence            5899999999999999999998888766555433 33 35667777788999999999864     34678899999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC---ccccH-HHHHHHhhc-CCeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN---RQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~---~~~~~-~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |++++.+|+.+..|+..+....  .+.|+++|+||.|+..   +.+.. +..+++... ++.|++|||++|.|++++|..
T Consensus        74 d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~  153 (158)
T cd04103          74 SLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQE  153 (158)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999887664  5789999999999742   33333 334566554 589999999999999999999


Q ss_pred             HHHH
Q 027607          167 LARK  170 (221)
Q Consensus       167 l~~~  170 (221)
                      +++.
T Consensus       154 ~~~~  157 (158)
T cd04103         154 AAQK  157 (158)
T ss_pred             HHhh
Confidence            9864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04135 Tc10 TC10 subfamily

Probab=99.97  E-value=8.4e-29  Score=179.40  Aligned_cols=157  Identities=25%  Similarity=0.405  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|+|||||+++++.+.+...+.++.+ +.....+.+++..+.+.+||++|++.+...+..++..+|++++||
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~   79 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF   79 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence            5899999999999999999999988777777665 334445667777888999999999999999999999999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEecccCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEISAKSN  157 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s~~~~  157 (221)
                      |++++.+|+.+. .|...+.....+.|+++|+||+|+.+..             + ..+...++...++ .++++||++|
T Consensus        80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~  159 (174)
T cd04135          80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ  159 (174)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence            999999998885 5777776656789999999999985421             1 2234455666664 7999999999


Q ss_pred             CChHHHHHHHHHHH
Q 027607          158 YNFEKPFLYLARKL  171 (221)
Q Consensus       158 ~gv~~~~~~l~~~l  171 (221)
                      .|++++|+.++.++
T Consensus       160 ~gi~~~f~~~~~~~  173 (174)
T cd04135         160 KGLKTVFDEAILAI  173 (174)
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.97  E-value=3.3e-29  Score=182.37  Aligned_cols=160  Identities=22%  Similarity=0.286  Sum_probs=125.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+++|+.|||||||++++..+.+. .+.++.|.+...    +....+.+.+||++|++.++.++..+++++|++
T Consensus        14 ~~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~~~----~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i   88 (181)
T PLN00223         14 AKKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGL   88 (181)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeEEE----EEECCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence            456799999999999999999998877775 456777765543    233568899999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~  162 (221)
                      |+|+|+++..++.....++..+..  ...+.|+++|+||+|+.+.....+........     .+.++++||++|.|+.+
T Consensus        89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e  168 (181)
T PLN00223         89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE  168 (181)
T ss_pred             EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHH
Confidence            999999999999887777666543  23579999999999997654333322222211     23466899999999999


Q ss_pred             HHHHHHHHHhCC
Q 027607          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|++|++.+...
T Consensus       169 ~~~~l~~~~~~~  180 (181)
T PLN00223        169 GLDWLSNNIANK  180 (181)
T ss_pred             HHHHHHHHHhhc
Confidence            999999987653

>cd04149 Arf6 Arf6 subfamily

Probab=99.97  E-value=2.6e-29  Score=180.94  Aligned_cols=156  Identities=19%  Similarity=0.280  Sum_probs=122.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +..+.+||+++|++|||||||++++..+.+. .+.++.+.+.....    ...+.+.+|||+|++.+..++..+++.+|+
T Consensus         5 ~~~~~~kv~i~G~~~~GKTsli~~l~~~~~~-~~~~t~g~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~   79 (168)
T cd04149           5 FGNKEMRILMLGLDAAGKTTILYKLKLGQSV-TTIPTVGFNVETVT----YKNVKFNVWDVGGQDKIRPLWRHYYTGTQG   79 (168)
T ss_pred             cCCCccEEEEECcCCCCHHHHHHHHccCCCc-cccCCcccceEEEE----ECCEEEEEEECCCCHHHHHHHHHHhccCCE
Confidence            3457899999999999999999998877664 35667776554322    246889999999999998888999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-----hcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~gv~  161 (221)
                      +++|||+++..++.....|+..+...  ..+.|+++|+||+|+.+.....+......     ...+.++++||++|.|++
T Consensus        80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~  159 (168)
T cd04149          80 LIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY  159 (168)
T ss_pred             EEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence            99999999999998887777666432  35789999999999875433333333321     223578999999999999


Q ss_pred             HHHHHHHH
Q 027607          162 KPFLYLAR  169 (221)
Q Consensus       162 ~~~~~l~~  169 (221)
                      ++|.+|++
T Consensus       160 ~~~~~l~~  167 (168)
T cd04149         160 EGLTWLSS  167 (168)
T ss_pred             HHHHHHhc
Confidence            99999865

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PLN03118 Rab family protein; Provisional

Probab=99.97  E-value=1.2e-28  Score=183.91  Aligned_cols=165  Identities=31%  Similarity=0.562  Sum_probs=137.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ...+||+|+|++|||||||+++|+.+.+ ..+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v   90 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII   90 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            3468999999999999999999887766 456778887777777777877889999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHH-HHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           91 IMFDVTARLTYKNVPT-WHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~-~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +|||+++..+|..+.. |...+....  ...|+++|+||+|+.... . ..+...++...++.++++|+++|.|++++|.
T Consensus        91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~  170 (211)
T PLN03118         91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFE  170 (211)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            9999999999999875 555554332  467999999999986432 2 2344566677788999999999999999999


Q ss_pred             HHHHHHhCCCC
Q 027607          166 YLARKLAGDPN  176 (221)
Q Consensus       166 ~l~~~l~~~~~  176 (221)
                      +|++.+...+.
T Consensus       171 ~l~~~~~~~~~  181 (211)
T PLN03118        171 ELALKIMEVPS  181 (211)
T ss_pred             HHHHHHHhhhh
Confidence            99999987664

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.97  E-value=9e-29  Score=187.65  Aligned_cols=157  Identities=29%  Similarity=0.511  Sum_probs=131.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|||||||+++|+.+.+...+.++.+ +.....+.+++..+.+.+|||+|++.+..++..++..+|++++||
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf   79 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF   79 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence            5899999999999999999999998877778876 555566777888899999999999988888888899999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh----------cCCCCEEEEEeCCCcCC-cccc-HHHHHHHh-hcCCeEEEecccCCCCh
Q 027607           94 DVTARLTYKNVPTWHRDLCRV----------CENIPIVLCGNKVDVKN-RQVK-AKQVTFHR-KKNLQYYEISAKSNYNF  160 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~----------~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~-~~~~~~~~~s~~~~~gv  160 (221)
                      |+++..+|+.+..|+..+...          ..+.|+++|+||+|+.. +... .+..++.. ..++.++++||++|.|+
T Consensus        80 dv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI  159 (247)
T cd04143          80 SLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNL  159 (247)
T ss_pred             eCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCH
Confidence            999999999999998887643          24789999999999864 3333 23333333 24678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027607          161 EKPFLYLARKL  171 (221)
Q Consensus       161 ~~~~~~l~~~l  171 (221)
                      +++|.+|++..
T Consensus       160 ~elf~~L~~~~  170 (247)
T cd04143         160 DEMFRALFSLA  170 (247)
T ss_pred             HHHHHHHHHHh
Confidence            99999999854

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.96  E-value=8.5e-29  Score=177.90  Aligned_cols=157  Identities=22%  Similarity=0.383  Sum_probs=128.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccccEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~d~~i~v~   93 (221)
                      ||+++|++|||||||+++++.+.+...+.++.+.. +.....+++..+.+.+||+||+.. .......+++.+|++++||
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~   79 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESL-YSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY   79 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHh-ceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence            68999999999999999999888776666666533 345566777888999999999875 3445667889999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC-CChHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN-YNFEKPFLYL  167 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~-~gv~~~~~~l  167 (221)
                      |+++..+|+.+..|+..+....   .+.|+++|+||+|+... .. ..+...++...+++++++|+++| .|+.++|..+
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l  159 (165)
T cd04146          80 SITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHEL  159 (165)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHH
Confidence            9999999999999988877653   37999999999998543 22 23455677778899999999999 5999999999


Q ss_pred             HHHHh
Q 027607          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      ++.+.
T Consensus       160 ~~~~~  164 (165)
T cd04146         160 CREVR  164 (165)
T ss_pred             HHHHh
Confidence            98653

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04158 ARD1 ARD1 subfamily

Probab=99.96  E-value=8.3e-29  Score=178.61  Aligned_cols=158  Identities=23%  Similarity=0.344  Sum_probs=125.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|++|||||||++++..+.+.. +.+|.+.....    +....+.+.+|||||+..+...+..+++.+|++++|+|
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D   75 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVET----VEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD   75 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEEE----EEECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence            68999999999999999988876543 56666655432    23356889999999999888888999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhhc------CCeEEEecccCCCChHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++++.++.....|+..+...  ..+.|+++|+||+|+.+.....+...+....      .+.++++||++|.|++++|++
T Consensus        76 ~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~  155 (169)
T cd04158          76 SSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDW  155 (169)
T ss_pred             CCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHH
Confidence            99999999988888877643  2468999999999997653333333333211      236889999999999999999


Q ss_pred             HHHHHhCCCCC
Q 027607          167 LARKLAGDPNL  177 (221)
Q Consensus       167 l~~~l~~~~~~  177 (221)
                      |++.+..++.+
T Consensus       156 l~~~~~~~~~~  166 (169)
T cd04158         156 LSRQLVAAGVL  166 (169)
T ss_pred             HHHHHhhcccc
Confidence            99998887753

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04177 RSR1 RSR1 subgroup

Probab=99.96  E-value=2.4e-28  Score=176.07  Aligned_cols=159  Identities=26%  Similarity=0.528  Sum_probs=133.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||++++..+.+...+.++.+.. ......+++..+.+.+|||||++.+..++..+++.++++++|
T Consensus         1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv   79 (168)
T cd04177           1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLV   79 (168)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEE
Confidence            4799999999999999999999888877777777643 345566777788999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcC-CeEEEecccCCCChHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ||++++.+++.+..|...+...  ..+.|+++++||.|+....  ...+...+....+ ++++++||++|.|+.++|.++
T Consensus        80 ~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i  159 (168)
T cd04177          80 YSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL  159 (168)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHH
Confidence            9999999999999998887653  3579999999999986432  2233445555665 789999999999999999999


Q ss_pred             HHHHh
Q 027607          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      +..+.
T Consensus       160 ~~~~~  164 (168)
T cd04177         160 VRQII  164 (168)
T ss_pred             HHHHh
Confidence            98764

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.96  E-value=1.4e-29  Score=172.11  Aligned_cols=163  Identities=27%  Similarity=0.536  Sum_probs=143.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccccccccEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      .+.+++.|+|++-+|||||++.+..|++....+||.|++++..-+.+ ++..+.+++|||+|+++++++...|++++-++
T Consensus         6 ~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv   85 (213)
T KOG0091|consen    6 HYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV   85 (213)
T ss_pred             EEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence            35699999999999999999999999999999999999988876655 45678999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc--CCC-CEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENI-PIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~-p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++|||++|..||+.+..|+.+...+.  +.+ -+.+|++|+|+.. +++ .+++..++..+++.|+++|+++|.|+++.|
T Consensus        86 llvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF  165 (213)
T KOG0091|consen   86 LLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAF  165 (213)
T ss_pred             EEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHH
Confidence            99999999999999999998876654  334 4578999999964 333 456778999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      ..|++.+..
T Consensus       166 ~mlaqeIf~  174 (213)
T KOG0091|consen  166 DMLAQEIFQ  174 (213)
T ss_pred             HHHHHHHHH
Confidence            999998754

>cd04123 Rab21 Rab21 subfamily

Probab=99.96  E-value=2.5e-28  Score=174.67  Aligned_cols=158  Identities=31%  Similarity=0.567  Sum_probs=133.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.....++.+.+.......+.+..+.+.+||++|++.+..++..+++++|++++|+
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVY   80 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEE
Confidence            58999999999999999999988887666666666666666667777789999999999988888888999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+++..+++.+..|+..+..... +.|+++|+||+|+... ... .+..+.....+..++++|++++.|++++++++.+.
T Consensus        81 d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~  160 (162)
T cd04123          81 DITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKR  160 (162)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHH
Confidence            99999999999999888876643 6899999999998743 222 33445666778899999999999999999999886


Q ss_pred             H
Q 027607          171 L  171 (221)
Q Consensus       171 l  171 (221)
                      +
T Consensus       161 ~  161 (162)
T cd04123         161 M  161 (162)
T ss_pred             h
Confidence            5

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd00154 Rab Rab family

Probab=99.96  E-value=1.4e-28  Score=175.04  Aligned_cols=155  Identities=36%  Similarity=0.716  Sum_probs=137.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||++++..+.+...+.++.+.++.............+.+||+||+..+...+..+++++|++++|+
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~   80 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVY   80 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEE
Confidence            58999999999999999999988888777888888888888888888899999999999888888899999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcC--CccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |++++.++..+..|+..+.... ...|+++++||+|+.  ......+...+....+.+++++|++++.|+.+++.+|+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154          81 DITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            9999999999999998887765 579999999999995  33344555567777789999999999999999999876

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=7e-31  Score=177.68  Aligned_cols=162  Identities=32%  Similarity=0.594  Sum_probs=144.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec---------CcEEEEEEEecCCcccccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---------CGKIRFYCWDTAGQEKFGGLRDGYY   83 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~~~D~~g~~~~~~~~~~~~   83 (221)
                      -+|.+.+|++|+|||||+.++..++|......+.|+++..+.+.++         +..+.+++|||+|+++++++...++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFf   88 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFF   88 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999999988877653         2347899999999999999999999


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccH--HHHHHHhhcCCeEEEecccCCCC
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKA--KQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~g  159 (221)
                      +.+-+++++||+++..||-+++.|+..+..+  +++..+++++||+|+++.++..  ++.+++.+.+++|+++||.+|.+
T Consensus        89 RDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N  168 (219)
T KOG0081|consen   89 RDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN  168 (219)
T ss_pred             HhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence            9999999999999999999999999998654  5788999999999998755443  45688999999999999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 027607          160 FEKPFLYLARKLAGD  174 (221)
Q Consensus       160 v~~~~~~l~~~l~~~  174 (221)
                      +++..+.+...+++.
T Consensus       169 v~kave~LldlvM~R  183 (219)
T KOG0081|consen  169 VEKAVELLLDLVMKR  183 (219)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999998888877654

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.96  E-value=4.1e-28  Score=175.92  Aligned_cols=158  Identities=30%  Similarity=0.508  Sum_probs=128.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +.||+|+|++|||||||+++++.+.+...+.++.+..+. ..+.+++..+.+.+|||+|++.+...+..++.++|++++|
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v   79 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC   79 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence            468999999999999999999998887777777764443 3556777788999999999999888888889999999999


Q ss_pred             EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------cHHHHHHHhhcC-CeEEEecccC
Q 027607           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------KAKQVTFHRKKN-LQYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~~~~~~~~~~~~-~~~~~~s~~~  156 (221)
                      ||+++..+|+.+. .|...+.....+.|+++|+||+|+.....              ..+..+++...+ ..++++||++
T Consensus        80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~  159 (175)
T cd01870          80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT  159 (175)
T ss_pred             EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence            9999999998875 57777776667899999999999854221              122334444444 4799999999


Q ss_pred             CCChHHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARKL  171 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l  171 (221)
                      |.|++++|.+|+++.
T Consensus       160 ~~~v~~lf~~l~~~~  174 (175)
T cd01870         160 KEGVREVFEMATRAA  174 (175)
T ss_pred             CcCHHHHHHHHHHHh
Confidence            999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.96  E-value=1.3e-28  Score=178.43  Aligned_cols=157  Identities=24%  Similarity=0.328  Sum_probs=123.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+++|++|||||||++++..+.+. .+.++.+.......    ...+.+.+||++|++.+..++..+++++|++
T Consensus        10 ~~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~~~~----~~~~~l~l~D~~G~~~~~~~~~~~~~~ad~i   84 (175)
T smart00177       10 GNKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVETVT----YKNISFTVWDVGGQDKIRPLWRHYYTNTQGL   84 (175)
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceEEEE----ECCEEEEEEECCCChhhHHHHHHHhCCCCEE
Confidence            356799999999999999999998877774 35677776554332    2468899999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++|+|++++.++.....|+..+...  ..+.|+++|+||+|+.+.....+.....     ....+.++++||++|.|+++
T Consensus        85 i~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e  164 (175)
T smart00177       85 IFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYE  164 (175)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHH
Confidence            9999999999998888887776432  3578999999999987543222222211     12234577899999999999


Q ss_pred             HHHHHHHHH
Q 027607          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      +|.||...+
T Consensus       165 ~~~~l~~~~  173 (175)
T smart00177      165 GLTWLSNNL  173 (175)
T ss_pred             HHHHHHHHh
Confidence            999998864

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.96  E-value=2e-28  Score=178.42  Aligned_cols=161  Identities=20%  Similarity=0.309  Sum_probs=124.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+++||+++|++|||||||++++..+.+.. +.+|.+......    ....+.+.+|||+|++.++.++..+++.+|+
T Consensus        13 ~~~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~~~----~~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~   87 (182)
T PTZ00133         13 FGKKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVETV----EYKNLKFTMWDVGGQDKLRPLWRHYYQNTNG   87 (182)
T ss_pred             cCCCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceEEE----EECCEEEEEEECCCCHhHHHHHHHHhcCCCE
Confidence            34567999999999999999999987777754 566777555432    2356889999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++|+|+++..++.....++..+...  ..+.|+++|+||.|+.+.....+....     +....+.++++||++|.|++
T Consensus        88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~  167 (182)
T PTZ00133         88 LIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLY  167 (182)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHH
Confidence            99999999999998887776665332  357899999999998654322222211     11223457789999999999


Q ss_pred             HHHHHHHHHHhCC
Q 027607          162 KPFLYLARKLAGD  174 (221)
Q Consensus       162 ~~~~~l~~~l~~~  174 (221)
                      ++|++|++.+.+.
T Consensus       168 e~~~~l~~~i~~~  180 (182)
T PTZ00133        168 EGLDWLSANIKKS  180 (182)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999877653

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.96  E-value=5e-28  Score=173.49  Aligned_cols=158  Identities=30%  Similarity=0.561  Sum_probs=133.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+...+.++.+.. .......++..+.+.+||+||+..+...+..+++.++++++|+
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF   79 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-EEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence            589999999999999999999888877767666533 3445567777889999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |++++.++..+..|+..+....  .+.|+++|+||+|+.. + ....+........+++++++|+++|.|++++|.++++
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  159 (164)
T cd04139          80 SITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVR  159 (164)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHH
Confidence            9999999999999988887652  5799999999999865 2 2233444566667789999999999999999999998


Q ss_pred             HHh
Q 027607          170 KLA  172 (221)
Q Consensus       170 ~l~  172 (221)
                      .+.
T Consensus       160 ~~~  162 (164)
T cd04139         160 EIR  162 (164)
T ss_pred             HHH
Confidence            764

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd04114 Rab30 Rab30 subfamily

Probab=99.96  E-value=1.2e-27  Score=172.48  Aligned_cols=160  Identities=34%  Similarity=0.614  Sum_probs=133.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.++|+++|++|||||||++++..+.+...+.++.+.+.......+.+..+.+.+||++|+..+...+..++..+|++++
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~   85 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALIL   85 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence            56999999999999999999988787776667777766766677777777899999999998888888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccccHH-HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|+++..++..+..|+..+.... .+.|+++|+||+|+.+ +..... ...+.......++++|+++|.|++++|++|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~  165 (169)
T cd04114          86 TYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLA  165 (169)
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHH
Confidence            999999999999989988876654 3689999999999864 333333 3344555568899999999999999999999


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       166 ~~~  168 (169)
T cd04114         166 CRL  168 (169)
T ss_pred             HHh
Confidence            864

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.96  E-value=2.4e-28  Score=174.40  Aligned_cols=151  Identities=24%  Similarity=0.340  Sum_probs=118.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|||||||++++..+.+. .+.++.+.......    ...+.+.+||++|++.+..++..+++++|++++|+
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~   75 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETVE----YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEEE----ECCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence            48999999999999999998888776 45677775543222    24688999999999999888999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |+++..++.....|+..+...  ..+.|+++++||+|+.+.....+.....     ....+.++++||++|.|++++|++
T Consensus        76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~  155 (159)
T cd04150          76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDW  155 (159)
T ss_pred             eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHH
Confidence            999999998888777666432  2468999999999997543322222111     122446789999999999999999


Q ss_pred             HHH
Q 027607          167 LAR  169 (221)
Q Consensus       167 l~~  169 (221)
                      |++
T Consensus       156 l~~  158 (159)
T cd04150         156 LSN  158 (159)
T ss_pred             Hhc
Confidence            864

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04129 Rho2 Rho2 subfamily

Probab=99.96  E-value=2.4e-27  Score=173.67  Aligned_cols=161  Identities=30%  Similarity=0.469  Sum_probs=130.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +.||+|+|++|+|||||++++..+.+...+.++.+..+ .....+.+..+.+.+||++|++.+......++..+++++++
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv   79 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG   79 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence            46999999999999999999888887666666554333 33455666778899999999988877777778999999999


Q ss_pred             EECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-----------c-cHHHHHHHhhcCC-eEEEecccCCC
Q 027607           93 FDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------V-KAKQVTFHRKKNL-QYYEISAKSNY  158 (221)
Q Consensus        93 ~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-----------~-~~~~~~~~~~~~~-~~~~~s~~~~~  158 (221)
                      |++++..+|+.+. .|+..+....++.|+++|+||+|+.+..           . ..+...++...+. .++++||++|.
T Consensus        80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~  159 (187)
T cd04129          80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE  159 (187)
T ss_pred             EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence            9999999999986 6888887777789999999999985421           1 2344566667764 89999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 027607          159 NFEKPFLYLARKLAGD  174 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~  174 (221)
                      |++++|+++++.+...
T Consensus       160 ~v~~~f~~l~~~~~~~  175 (187)
T cd04129         160 GVDDVFEAATRAALLV  175 (187)
T ss_pred             CHHHHHHHHHHHHhcc
Confidence            9999999999877554

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>cd04154 Arl2 Arl2 subfamily

Probab=99.96  E-value=4.3e-28  Score=175.55  Aligned_cols=155  Identities=18%  Similarity=0.289  Sum_probs=121.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ....++|+++|++|||||||++++..+. ...+.++.+......  .++  .+.+.+||+||++.++.++..+++.+|++
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~~-~~~~~~t~g~~~~~~--~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~   85 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGED-IDTISPTLGFQIKTL--EYE--GYKLNIWDVGGQKTLRPYWRNYFESTDAL   85 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccCC-CCCcCCccccceEEE--EEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence            4467999999999999999999987663 345566666443332  233  57899999999998888888899999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++|+|+++..++.....|+..+...  ..+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|+++
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  165 (173)
T cd04154          86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQ  165 (173)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHH
Confidence            9999999999998888887776432  3589999999999987644333333332     23467899999999999999


Q ss_pred             HHHHHHH
Q 027607          163 PFLYLAR  169 (221)
Q Consensus       163 ~~~~l~~  169 (221)
                      +|++++.
T Consensus       166 l~~~l~~  172 (173)
T cd04154         166 GIDWLVD  172 (173)
T ss_pred             HHHHHhc
Confidence            9999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.96  E-value=8.6e-28  Score=175.41  Aligned_cols=162  Identities=21%  Similarity=0.275  Sum_probs=126.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ..+||+++|++|||||||+++++.+.+... .++.+.+........ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus         2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii   80 (183)
T cd04152           2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV   80 (183)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence            358999999999999999999988777543 566666666555544 335689999999999988888899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHHHh------hcCCeEEEecccCCCChHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHR------KKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~gv~~  162 (221)
                      +|+|+++..++.....|+..+....  .+.|+++|+||+|+.+.....+...+..      ...+.++++||++|.|+++
T Consensus        81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~  160 (183)
T cd04152          81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQE  160 (183)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHH
Confidence            9999999988888887877765532  4789999999999865322222222221      1135688999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027607          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      ++.+|++.+...
T Consensus       161 l~~~l~~~l~~~  172 (183)
T cd04152         161 GLEKLYEMILKR  172 (183)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987543

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.96  E-value=2.6e-28  Score=175.07  Aligned_cols=149  Identities=15%  Similarity=0.155  Sum_probs=123.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (221)
                      |+++|++|||||||+++++.+.+...+.++.+...    ..+..+.+.+.+||++|++.++.++..+++++|++++|+|+
T Consensus         2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~   77 (164)
T cd04162           2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS   77 (164)
T ss_pred             EEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence            79999999999999999998888777778877543    23455678999999999999999999999999999999999


Q ss_pred             CChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH------HHHHHhhcCCeEEEecccC------CCChHHH
Q 027607           96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKS------NYNFEKP  163 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~------~~gv~~~  163 (221)
                      ++..++.....|+..+.....+.|+++|+||+|+.......+      ...++...++.++++||++      +.|++++
T Consensus        78 t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~  157 (164)
T cd04162          78 ADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDL  157 (164)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHH
Confidence            999999888888887765456899999999999865433222      2344456678889888887      9999999


Q ss_pred             HHHHH
Q 027607          164 FLYLA  168 (221)
Q Consensus       164 ~~~l~  168 (221)
                      |..+.
T Consensus       158 ~~~~~  162 (164)
T cd04162         158 LSQLI  162 (164)
T ss_pred             HHHHh
Confidence            98775

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd00157 Rho Rho (Ras homology) family

Probab=99.96  E-value=3.7e-27  Score=170.19  Aligned_cols=155  Identities=29%  Similarity=0.519  Sum_probs=126.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++|+.+.+...+.++.. ..........+..+.+.+||+||++.+...+..+++.+|++++||
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~   79 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVF-DNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF   79 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence            6899999999999999999998887655555554 334445566677889999999999988888888889999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc-------------cHHHHHHHhhcCC-eEEEecccCCC
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-------------KAKQVTFHRKKNL-QYYEISAKSNY  158 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-------------~~~~~~~~~~~~~-~~~~~s~~~~~  158 (221)
                      |+++..++.... .|+..+.....+.|+++|+||+|+.....             ..+...+....++ .++++|+++|.
T Consensus        80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~  159 (171)
T cd00157          80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE  159 (171)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence            999999887754 57777776667899999999999865432             2334456666666 89999999999


Q ss_pred             ChHHHHHHHHH
Q 027607          159 NFEKPFLYLAR  169 (221)
Q Consensus       159 gv~~~~~~l~~  169 (221)
                      |+.+++.+|.+
T Consensus       160 gi~~l~~~i~~  170 (171)
T cd00157         160 GVKEVFEEAIR  170 (171)
T ss_pred             CHHHHHHHHhh
Confidence            99999998875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd01893 Miro1 Miro1 subfamily

Probab=99.95  E-value=4.5e-27  Score=169.10  Aligned_cols=158  Identities=18%  Similarity=0.288  Sum_probs=122.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|.+|||||||++++..+.+...+..+..  .......+.+..+.+.+|||+|...+...+..++..+|++++||
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~   78 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLP--EITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY   78 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCccc--ceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence            4899999999999999999998888655333221  22334455667789999999999877777777789999999999


Q ss_pred             ECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc-C-CeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK-N-LQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~-~-~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |++++.+++.+. .|...+.....+.|+++|+||+|+.+....    .+........ . ..++++||++|.|++++|..
T Consensus        79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~  158 (166)
T cd01893          79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYY  158 (166)
T ss_pred             ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHH
Confidence            999999999875 677777666568999999999999764432    1222222222 2 37999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      +.+.+.+
T Consensus       159 ~~~~~~~  165 (166)
T cd01893         159 AQKAVLH  165 (166)
T ss_pred             HHHHhcC
Confidence            9887653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04157 Arl6 Arl6 subfamily

Probab=99.95  E-value=1.1e-27  Score=171.48  Aligned_cols=151  Identities=24%  Similarity=0.393  Sum_probs=117.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc-cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +|+++|++|||||||++++..+. ....+.++.+......    ....+.+.+|||||++.+..++..+++.+|++++|+
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~   76 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF----EKGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI   76 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE----EECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence            58999999999999999988765 3556677777554332    235688999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |+++..++.....|+..+...    ..+.|+++|+||+|+.+.....+.....     ....+.++++||++|.|++++|
T Consensus        77 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~  156 (162)
T cd04157          77 DSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGV  156 (162)
T ss_pred             eCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHH
Confidence            999999988877777766442    1479999999999987543322222111     1123468999999999999999


Q ss_pred             HHHHH
Q 027607          165 LYLAR  169 (221)
Q Consensus       165 ~~l~~  169 (221)
                      .+|++
T Consensus       157 ~~l~~  161 (162)
T cd04157         157 QWLQA  161 (162)
T ss_pred             HHHhc
Confidence            99875

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd00876 Ras Ras family

Probab=99.95  E-value=3.5e-27  Score=168.40  Aligned_cols=155  Identities=33%  Similarity=0.591  Sum_probs=130.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+|+|++|||||||+++++.+.+...+.++.+ +.........+..+.+.+||+||+..+...+..++..+|++++|||
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d   79 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS   79 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence            689999999999999999998887777777766 4555566666667899999999999888888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ++++.++..+..|...+.....  ..|+++|+||+|+.. .... .+...+....+.+++++|++++.|+++++++|++.
T Consensus        80 ~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876          80 ITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            9999999999998888876654  899999999999875 2222 34455666677899999999999999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.95  E-value=9.9e-27  Score=171.87  Aligned_cols=160  Identities=28%  Similarity=0.385  Sum_probs=128.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|++|||||||+++++.+.+...+.++.. ......+.+.+..+.+.+||++|+..+..++..++..+|++++|||
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d   79 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA   79 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence            689999999999999999999888776666664 3444456667777899999999998888888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc--cccH-HHHHHH-hhcCCeEEEecccCCCChHHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKA-KQVTFH-RKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~-~~~~~~-~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +++..+++.+..|+..+....  .+.|+++|+||+|+...  .... ...... ...+..++++|+++|.|+.++|++|+
T Consensus        80 ~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~  159 (198)
T cd04147          80 VDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELL  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHH
Confidence            999999999999988876653  47999999999998542  2222 222222 23457899999999999999999999


Q ss_pred             HHHhCCC
Q 027607          169 RKLAGDP  175 (221)
Q Consensus       169 ~~l~~~~  175 (221)
                      +.+...+
T Consensus       160 ~~~~~~~  166 (198)
T cd04147         160 RQANLPY  166 (198)
T ss_pred             HHhhccc
Confidence            9775443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.95  E-value=4.5e-27  Score=170.33  Aligned_cols=154  Identities=25%  Similarity=0.349  Sum_probs=119.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||+++++.+.+.. +.++.+.++....    ...+.+.+||+||++.+...+..++..+|+++
T Consensus        13 ~~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~~~----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi   87 (174)
T cd04153          13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNVEEIV----YKNIRFLMWDIGGQESLRSSWNTYYTNTDAVI   87 (174)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccceEEEE----ECCeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence            357899999999999999999988887764 4667665543322    23578999999999988888888999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|+++..++.....++..+...  ..+.|+++++||+|+.+.....+.....     ...+++++++||++|.|++++
T Consensus        88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~  167 (174)
T cd04153          88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEG  167 (174)
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHH
Confidence            999999998888777766665433  2479999999999987533222222111     234567899999999999999


Q ss_pred             HHHHHH
Q 027607          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      |++|++
T Consensus       168 ~~~l~~  173 (174)
T cd04153         168 LDWIAS  173 (174)
T ss_pred             HHHHhc
Confidence            999875

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.2e-27  Score=157.88  Aligned_cols=165  Identities=33%  Similarity=0.540  Sum_probs=149.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      .-||..++|+-|+|||+|++.+...++.....+++|+.+....+.+.+..+.+++|||+|+++++...+.|++.+-+.++
T Consensus        10 yifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagalm   89 (215)
T KOG0097|consen   10 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM   89 (215)
T ss_pred             heEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhccccceeE
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++.+..+..+..|+...+.. .++..+++++||.|++. +.+ -+++.+++.+.++.+.++|+++|.++++.|...+
T Consensus        90 vyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle~a  169 (215)
T KOG0097|consen   90 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLETA  169 (215)
T ss_pred             EEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHHHH
Confidence            99999999999999999887654 36777889999999975 333 3567789999999999999999999999999999


Q ss_pred             HHHhCCCC
Q 027607          169 RKLAGDPN  176 (221)
Q Consensus       169 ~~l~~~~~  176 (221)
                      +.++++-.
T Consensus       170 kkiyqniq  177 (215)
T KOG0097|consen  170 KKIYQNIQ  177 (215)
T ss_pred             HHHHHhhh
Confidence            99887643

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.95  E-value=6.3e-27  Score=170.97  Aligned_cols=161  Identities=32%  Similarity=0.568  Sum_probs=145.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|.+|+|||+|+.+++.+.+...|.+++. +.+.+...+++....+.|+||+|++.+..+...++.+++++++
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptie-d~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~l   80 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIE-DSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLL   80 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCcc-ccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEE
Confidence            568999999999999999999999999999999998 7777888889899999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ||++++..||+.+..++..+...  ....|+++|+||+|+.. +.+. ++...++..+++.|+++||+.+.+++++|..|
T Consensus        81 Vysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~L  160 (196)
T KOG0395|consen   81 VYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYEL  160 (196)
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHHH
Confidence            99999999999999999998443  24689999999999976 4444 44567889999999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       161 ~r~~~~  166 (196)
T KOG0395|consen  161 VREIRL  166 (196)
T ss_pred             HHHHHh
Confidence            998766

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.95  E-value=1.1e-26  Score=170.97  Aligned_cols=147  Identities=19%  Similarity=0.315  Sum_probs=121.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-----CcEEEEEEEecCCccccccccccccccccE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +||+++|++|||||||+++++.+.+...+.+|.|.+.....+.+.     +..+.+.+|||+|++.+..++..+++++++
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~   80 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG   80 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence            589999999999999999999999988888899877776666553     457899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--------------------cCCCCEEEEEeCCCcCCcc-ccH-----HHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--------------------CENIPIVLCGNKVDVKNRQ-VKA-----KQVTFH  142 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--------------------~~~~p~ivv~nK~D~~~~~-~~~-----~~~~~~  142 (221)
                      +++|||++++.||+.+..|+..+...                    ..+.|+++|+||+|+.++. ...     ....++
T Consensus        81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia  160 (202)
T cd04102          81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA  160 (202)
T ss_pred             EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence            99999999999999999999988653                    1368999999999986543 222     223456


Q ss_pred             hhcCCeEEEecccCCCCh
Q 027607          143 RKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       143 ~~~~~~~~~~s~~~~~gv  160 (221)
                      .+.+.+.+..++..+..+
T Consensus       161 ~~~~~~~i~~~c~~~~~~  178 (202)
T cd04102         161 EQGNAEEINLNCTNGRLL  178 (202)
T ss_pred             HhcCCceEEEecCCcccc
Confidence            778888888887765543

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.95  E-value=1.9e-26  Score=166.88  Aligned_cols=156  Identities=24%  Similarity=0.432  Sum_probs=125.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+++|+.|||||||++++..+... ...||.|........    .++.+.+||++|+..++..|..|+.+++++|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~~~~-~~~pT~g~~~~~i~~----~~~~~~~~d~gG~~~~~~~w~~y~~~~~~iI   86 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNGEIS-ETIPTIGFNIEEIKY----KGYSLTIWDLGGQESFRPLWKSYFQNADGII   86 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSSSEE-EEEEESSEEEEEEEE----TTEEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhcccc-ccCcccccccceeee----CcEEEEEEeccccccccccceeeccccceeE
Confidence            68899999999999999999997766543 466677766655444    5678999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH------hhcCCeEEEecccCCCChHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +|+|+++...+......+..+...  ..+.|+++++||.|..+.....+.....      ....+.++.||+.+|.|+.+
T Consensus        87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e  166 (175)
T PF00025_consen   87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDE  166 (175)
T ss_dssp             EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHH
T ss_pred             EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHH
Confidence            999999998888777776666543  3589999999999987654433332211      13456789999999999999


Q ss_pred             HHHHHHHHH
Q 027607          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      .++||.+++
T Consensus       167 ~l~WL~~~~  175 (175)
T PF00025_consen  167 GLEWLIEQI  175 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHhcC
Confidence            999999864

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.95  E-value=2.5e-26  Score=167.29  Aligned_cols=161  Identities=25%  Similarity=0.378  Sum_probs=130.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      .||+++|++|||||||+++++.+.+...+.++.+... .......+..+.+.+||+||++.+...+..++..++++++||
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~   80 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY   80 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence            6899999999999999999998877665666654333 344555666778999999999988888888999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |+++..+++.+..|+..+....  .+.|+++|+||+|+.... .. .+...+....+.+++++|++++.|+.+++.++.+
T Consensus        81 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  160 (180)
T cd04137          81 SVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIE  160 (180)
T ss_pred             ECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999998888776643  468999999999986422 22 2334455666789999999999999999999999


Q ss_pred             HHhCCC
Q 027607          170 KLAGDP  175 (221)
Q Consensus       170 ~l~~~~  175 (221)
                      .+...+
T Consensus       161 ~~~~~~  166 (180)
T cd04137         161 EIEKVE  166 (180)
T ss_pred             HHHHhc
Confidence            876554

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd00879 Sar1 Sar1 subfamily

Probab=99.95  E-value=1e-26  Score=170.82  Aligned_cols=155  Identities=17%  Similarity=0.292  Sum_probs=119.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||++++..+.+. .+.++.+.+...  +.+  ....+.+||+||+..+...+..+++.+++++
T Consensus        17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~~~--i~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~ii   91 (190)
T cd00879          17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTSEE--LTI--GNIKFKTFDLGGHEQARRLWKDYFPEVDGIV   91 (190)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcceEE--EEE--CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence            46799999999999999999998876653 455566544332  223  3478899999999888888888999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHHHhh----------------cCCeEEEe
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTFHRK----------------KNLQYYEI  152 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----------------~~~~~~~~  152 (221)
                      +|+|+++..++.....|+..+....  .+.|+++++||+|+.+.....+.......                ..+.++++
T Consensus        92 lV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (190)
T cd00879          92 FLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEVFMC  171 (190)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccccccCceeEEEEEe
Confidence            9999999988887777777765432  46999999999998753333333333321                23568999


Q ss_pred             cccCCCChHHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~  170 (221)
                      ||++|.|+.++|.+|++.
T Consensus       172 Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         172 SVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             EecCCCChHHHHHHHHhh
Confidence            999999999999999874

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.95  E-value=1.5e-28  Score=161.72  Aligned_cols=158  Identities=26%  Similarity=0.538  Sum_probs=140.2

Q ss_pred             EEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECC
Q 027607           18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        18 v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (221)
                      ++|++++|||+|+-++..|.+ .....++.|.++..+.+..++..+.+++|||+|++++++....|++.+|+++++||+.
T Consensus         2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllydia   81 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIA   81 (192)
T ss_pred             ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecc
Confidence            689999999999988766666 3456779999999999999999999999999999999999999999999999999999


Q ss_pred             ChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-c-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607           97 ARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-R-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus        97 ~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +..||++...|+..+..+. ..+.+.+++||+|+.. + ...++...++...+++++++|+++|-+++..|..|+..+.+
T Consensus        82 nkasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen   82 NKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             cchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            9999999999999998875 4677889999999954 3 33456778899999999999999999999999999998866


Q ss_pred             CC
Q 027607          174 DP  175 (221)
Q Consensus       174 ~~  175 (221)
                      ..
T Consensus       162 ~~  163 (192)
T KOG0083|consen  162 LK  163 (192)
T ss_pred             hc
Confidence            43

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.95  E-value=9.8e-27  Score=167.42  Aligned_cols=150  Identities=23%  Similarity=0.291  Sum_probs=118.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      +|+++|++|||||||++++..+ +...+.++.|.+...  +.  ...+.+.+||++|+..++.++..++++++++++|+|
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~~--~~--~~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D   75 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPTK--LR--LDKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD   75 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEEE--EE--ECCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence            5899999999999999997755 666777888765432  22  246789999999999999999999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH------HHHhh--cCCeEEEecccCC------C
Q 027607           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV------TFHRK--KNLQYYEISAKSN------Y  158 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~--~~~~~~~~s~~~~------~  158 (221)
                      +++..++..+..|+..+....  .+.|+++|+||.|+.+.....+..      .++.+  ..+.++++||++|      .
T Consensus        76 ~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~  155 (167)
T cd04161          76 SSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDP  155 (167)
T ss_pred             CCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCcccc
Confidence            999999999888888776542  478999999999997654222222      12212  2356788999998      8


Q ss_pred             ChHHHHHHHHH
Q 027607          159 NFEKPFLYLAR  169 (221)
Q Consensus       159 gv~~~~~~l~~  169 (221)
                      |+.+.|+||..
T Consensus       156 g~~~~~~wl~~  166 (167)
T cd04161         156 SIVEGLRWLLA  166 (167)
T ss_pred             CHHHHHHHHhc
Confidence            99999999965

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.95  E-value=1.1e-26  Score=166.06  Aligned_cols=151  Identities=19%  Similarity=0.307  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      +|+++|++|||||||++++..+.+.. ..++.+.+....  .. .....+.+||++|+..+...+..++..+|++++|+|
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~~-~~~t~~~~~~~~--~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D   76 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELVT-TIPTVGFNVEML--QL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD   76 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCccc-ccCccCcceEEE--Ee-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence            58999999999999999988877653 356666444322  22 245789999999999888888889999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH------HHhhcCCeEEEecccCCCChHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +++..++.....|+..+...  ..+.|+++|+||+|+.......+...      ++...+++++++||++|.|++++|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~  156 (160)
T cd04156          77 SSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRK  156 (160)
T ss_pred             CCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHH
Confidence            99998888888777766543  25899999999999864322222221      12223457899999999999999999


Q ss_pred             HHH
Q 027607          167 LAR  169 (221)
Q Consensus       167 l~~  169 (221)
                      |++
T Consensus       157 i~~  159 (160)
T cd04156         157 LAS  159 (160)
T ss_pred             Hhc
Confidence            865

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.95  E-value=7e-27  Score=167.20  Aligned_cols=164  Identities=27%  Similarity=0.476  Sum_probs=144.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ..+|++|+|+.++|||+|+..+..+.|...+.+|.. +.+...+.++ +..+.+.+|||+|+++|..++...|..+|+++
T Consensus         3 ~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl   81 (198)
T KOG0393|consen    3 RRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL   81 (198)
T ss_pred             eeeEEEEECCCCcCceEEEEEeccCcCcccccCeEE-ccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence            568999999999999999999999999999999996 7777788885 89999999999999999998888899999999


Q ss_pred             EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEecc
Q 027607           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~  154 (221)
                      +||++.++.||+++. +|+.++..++++.|+++|++|.|+.+..              ...+....+.+.| ..|++||+
T Consensus        82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa  161 (198)
T KOG0393|consen   82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA  161 (198)
T ss_pred             EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence            999999999999855 8999999999999999999999987421              1233446666666 67999999


Q ss_pred             cCCCChHHHHHHHHHHHhCCCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~  176 (221)
                      ++..|++++|+..+++....+.
T Consensus       162 ~tq~~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  162 LTQKGVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             hhhCCcHHHHHHHHHHHhcccc
Confidence            9999999999999998877654

>cd04151 Arl1 Arl1 subfamily

Probab=99.94  E-value=3.4e-26  Score=163.24  Aligned_cols=150  Identities=21%  Similarity=0.320  Sum_probs=112.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|++|||||||++++..+.+.. +.++.+.+...    +....+.+.+|||||++.++.++..++..++++++|+|
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d   75 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVET----VTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD   75 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeEE----EEECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence            68999999999999999987776643 44555544432    22345789999999999888888999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +++..++.....++..+...  ..+.|+++|+||+|+.+.....+.....     ...+.+++++|+++|.|++++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  155 (158)
T cd04151          76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHH
Confidence            99988776655555443322  2479999999999986543222221111     1123579999999999999999998


Q ss_pred             HH
Q 027607          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      ++
T Consensus       156 ~~  157 (158)
T cd04151         156 VN  157 (158)
T ss_pred             hc
Confidence            75

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.94  E-value=2.9e-26  Score=164.98  Aligned_cols=151  Identities=24%  Similarity=0.385  Sum_probs=113.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +|+++|++|||||||++++.....      ...+.++.+.....  +.+  ....+.+|||||+..+..++..++..+++
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~--~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~   76 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGT--IEV--GNARLKFWDLGGQESLRSLWDKYYAECHA   76 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEE--EEE--CCEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence            589999999999999999765322      22233444433332  222  35789999999999988888889999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-------hcCCeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~g  159 (221)
                      +++|+|+++..++.....|+..+...  ..+.|+++|+||+|+.......+...+..       ...++++++||++|.|
T Consensus        77 ~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g  156 (167)
T cd04160          77 IIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTG  156 (167)
T ss_pred             EEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcC
Confidence            99999999988888877777766543  24799999999999876533333332222       2346899999999999


Q ss_pred             hHHHHHHHHH
Q 027607          160 FEKPFLYLAR  169 (221)
Q Consensus       160 v~~~~~~l~~  169 (221)
                      +++++++|+.
T Consensus       157 v~e~~~~l~~  166 (167)
T cd04160         157 VREGIEWLVE  166 (167)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.94  E-value=5e-26  Score=166.20  Aligned_cols=155  Identities=17%  Similarity=0.274  Sum_probs=118.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||++++..+.+. .+.++.+.+....    ..+++.+.+||++|+..++..+..++.++++++
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~~~t~~~~~~~~----~~~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii   89 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QHQPTQHPTSEEL----AIGNIKFTTFDLGGHQQARRLWKDYFPEVNGIV   89 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccccceEEE----EECCEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            46799999999999999999998876553 3345555443322    224578999999999988888899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh------------hcCCeEEEecccC
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISAKS  156 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~~~  156 (221)
                      +|+|++++.++.....++..+...  ..+.|+++|+||+|+.......+......            .....++++|+++
T Consensus        90 ~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~  169 (184)
T smart00178       90 YLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVR  169 (184)
T ss_pred             EEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeeccc
Confidence            999999998888877777666432  25789999999999865433333322211            1244689999999


Q ss_pred             CCChHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARK  170 (221)
Q Consensus       157 ~~gv~~~~~~l~~~  170 (221)
                      |.|++++++||...
T Consensus       170 ~~g~~~~~~wl~~~  183 (184)
T smart00178      170 RMGYGEGFKWLSQY  183 (184)
T ss_pred             CCChHHHHHHHHhh
Confidence            99999999999764

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.94  E-value=8.4e-26  Score=161.13  Aligned_cols=150  Identities=23%  Similarity=0.376  Sum_probs=119.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|.+|||||||+++++.+. ...+.++.+.+.....+    ....+.+||+||+..+...+..++..+|++++|+|
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D   75 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVEY----KNVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD   75 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEEE----CCEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence            68999999999999999988776 34556666655544332    35789999999999988888999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHH
Q 027607           95 VTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ++++.++.....|+..+...  ..+.|+++|+||+|+.......+.....     ....++++++|+++|.|+.++|++|
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l  155 (158)
T cd00878          76 SSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWL  155 (158)
T ss_pred             CCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHH
Confidence            99999998888877766553  2589999999999987644333322222     2345689999999999999999998


Q ss_pred             HH
Q 027607          168 AR  169 (221)
Q Consensus       168 ~~  169 (221)
                      ..
T Consensus       156 ~~  157 (158)
T cd00878         156 LQ  157 (158)
T ss_pred             hh
Confidence            75

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.94  E-value=1.9e-25  Score=152.15  Aligned_cols=157  Identities=20%  Similarity=0.356  Sum_probs=130.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ++++|.++|..||||||++++ +.+.......|+.|.......+    +.+.+++||++|+...+..|..||..+|++|+
T Consensus        15 rE~riLiLGLdNsGKTti~~k-l~~~~~~~i~pt~gf~Iktl~~----~~~~L~iwDvGGq~~lr~~W~nYfestdglIw   89 (185)
T KOG0073|consen   15 REVRILILGLDNSGKTTIVKK-LLGEDTDTISPTLGFQIKTLEY----KGYTLNIWDVGGQKTLRSYWKNYFESTDGLIW   89 (185)
T ss_pred             heeEEEEEecCCCCchhHHHH-hcCCCccccCCccceeeEEEEe----cceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence            489999999999999999999 5555577778888877666655    67899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHH------HHHHHhhcCCeEEEecccCCCChHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~------~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      |+|.+++..++.....++.+..  .....|++++.||.|+...-...+      .........++.+.||+.+|.++.+.
T Consensus        90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l~~g  169 (185)
T KOG0073|consen   90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDLLEG  169 (185)
T ss_pred             EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccHHHH
Confidence            9999999999887766655533  235789999999999975333222      22344667889999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      +.||...++.
T Consensus       170 idWL~~~l~~  179 (185)
T KOG0073|consen  170 IDWLCDDLMS  179 (185)
T ss_pred             HHHHHHHHHH
Confidence            9999998876

>PLN00023 GTP-binding protein; Provisional

Probab=99.94  E-value=1.8e-25  Score=172.14  Aligned_cols=140  Identities=21%  Similarity=0.398  Sum_probs=118.3

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-------------cEEEEEEEecCCccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-------------GKIRFYCWDTAGQEK   74 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~i~~~D~~g~~~   74 (221)
                      ......+||+|+|..|||||||+++|+.+.+...+.+++|.++....+.+++             ..+.+.+|||+|++.
T Consensus        16 ~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr   95 (334)
T PLN00023         16 GPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER   95 (334)
T ss_pred             CCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChh
Confidence            3456779999999999999999999999999888889999888766666542             468899999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhc-------------CCCCEEEEEeCCCcCCcc--------
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-------------ENIPIVLCGNKVDVKNRQ--------  133 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-------------~~~p~ivv~nK~D~~~~~--------  133 (221)
                      +..++..++++++++|+|||+++..+|+.+..|+..+....             .++|+++|+||+|+..+.        
T Consensus        96 frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~  175 (334)
T PLN00023         96 YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGN  175 (334)
T ss_pred             hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccc
Confidence            99999999999999999999999999999999999987652             248999999999986532        


Q ss_pred             ccHHHHHHHhhcCC
Q 027607          134 VKAKQVTFHRKKNL  147 (221)
Q Consensus       134 ~~~~~~~~~~~~~~  147 (221)
                      ..+++.+++...++
T Consensus       176 ~~e~a~~~A~~~g~  189 (334)
T PLN00023        176 LVDAARQWVEKQGL  189 (334)
T ss_pred             cHHHHHHHHHHcCC
Confidence            23456678877664

>cd01890 LepA LepA subfamily

Probab=99.93  E-value=2.4e-25  Score=162.01  Aligned_cols=154  Identities=16%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc-------cCCcccC------CcceeeeeeEEEe-----cCcEEEEEEEecCCccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~~   76 (221)
                      +|+++|++|||||||+++|+...       +...+.+      +.|.+........     ++..+.+.+|||||++.+.
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~   81 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS   81 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence            69999999999999999988632       1112222      2244544433332     5567889999999999998


Q ss_pred             cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEec
Q 027607           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEIS  153 (221)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~s  153 (221)
                      ..+..+++.+|++++|+|+++..++.....|....   ..+.|+++|+||+|+.+........+++...++   .++++|
T Consensus        82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~---~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (179)
T cd01890          82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL---ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVS  158 (179)
T ss_pred             HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH---HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEee
Confidence            88888999999999999999877666665554332   137899999999998653222222233444444   489999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q 027607          154 AKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l  171 (221)
                      +++|.|++++|++|++.+
T Consensus       159 a~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         159 AKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             ccCCCCHHHHHHHHHhhC
Confidence            999999999999998864

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.93  E-value=9e-25  Score=157.33  Aligned_cols=156  Identities=15%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc---------cccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------GYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~---------~~~~   84 (221)
                      .+|+++|++|||||||+++++.+.+..  .+..+.+............+.+.+|||||.........         ....
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~   78 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKPEV--APYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH   78 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCcc--CCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence            379999999999999999988766531  22223233333333333567899999999743111000         0112


Q ss_pred             cccEEEEEEECCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           85 HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      .+|++++|+|+++..++  .....|+..+.....+.|+++|+||+|+.+.....+...+....+.+++++||++|.|+++
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  158 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDE  158 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHH
Confidence            36899999999987654  4455677776655458999999999998654333333344445567899999999999999


Q ss_pred             HHHHHHHHH
Q 027607          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      ++++|.+.+
T Consensus       159 l~~~l~~~~  167 (168)
T cd01897         159 VKNKACELL  167 (168)
T ss_pred             HHHHHHHHh
Confidence            999999875

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.93  E-value=5.5e-25  Score=156.57  Aligned_cols=150  Identities=24%  Similarity=0.428  Sum_probs=117.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEEC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDV   95 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~   95 (221)
                      |+++|++|||||||++++..+.+...+.++.+.......  .  +.+.+.+||+||+..+...+..++..+|++++|+|+
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~--~--~~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~   77 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRKVT--K--GNVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA   77 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence            799999999999999999988887777777776554322  2  347899999999998888888999999999999999


Q ss_pred             CChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHHHHHH
Q 027607           96 TARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ++..++.....|+..+...  ..+.|+++|+||+|+.+.....+.....     ....++++++|+++|.|+.+++++|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  157 (159)
T cd04159          78 ADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLI  157 (159)
T ss_pred             CCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHh
Confidence            9988887777666665432  2478999999999986543322222111     22346789999999999999999987


Q ss_pred             H
Q 027607          169 R  169 (221)
Q Consensus       169 ~  169 (221)
                      +
T Consensus       158 ~  158 (159)
T cd04159         158 K  158 (159)
T ss_pred             h
Confidence            5

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04155 Arl3 Arl3 subfamily

Probab=99.93  E-value=8.1e-25  Score=158.33  Aligned_cols=155  Identities=17%  Similarity=0.329  Sum_probs=115.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.++|+++|++|||||||++++....+ ..+.++.|.+.....  .  .+..+.+||++|+..+...+..++..++++
T Consensus        11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~-~~~~~t~g~~~~~i~--~--~~~~~~~~D~~G~~~~~~~~~~~~~~~~~i   85 (173)
T cd04155          11 SSEEPRILILGLDNAGKTTILKQLASEDI-SHITPTQGFNIKTVQ--S--DGFKLNVWDIGGQRAIRPYWRNYFENTDCL   85 (173)
T ss_pred             cCCccEEEEEccCCCCHHHHHHHHhcCCC-cccCCCCCcceEEEE--E--CCEEEEEEECCCCHHHHHHHHHHhcCCCEE
Confidence            34579999999999999999999776544 345566665443332  2  346899999999988877888889999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhh-----cCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-----KNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~gv~~  162 (221)
                      ++|+|+++..++.....++..+...  ..+.|+++++||+|+.+.....+.......     ....++++||++|.|+++
T Consensus        86 i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~  165 (173)
T cd04155          86 IYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQE  165 (173)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHH
Confidence            9999999988887777666555432  247999999999998654322222221111     123478999999999999


Q ss_pred             HHHHHHH
Q 027607          163 PFLYLAR  169 (221)
Q Consensus       163 ~~~~l~~  169 (221)
                      +|+||++
T Consensus       166 ~~~~l~~  172 (173)
T cd04155         166 GMNWVCK  172 (173)
T ss_pred             HHHHHhc
Confidence            9999976

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=4.7e-25  Score=154.01  Aligned_cols=162  Identities=24%  Similarity=0.353  Sum_probs=136.3

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ..+..++.+|+++|-.+|||||+++++..+..... .||+|.......+    +++.+.+||..|+..++.+|..|+.+.
T Consensus        11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnVE~v~y----kn~~f~vWDvGGq~k~R~lW~~Y~~~t   85 (181)
T KOG0070|consen   11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNVETVEY----KNISFTVWDVGGQEKLRPLWKHYFQNT   85 (181)
T ss_pred             hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccceeEEEE----cceEEEEEecCCCcccccchhhhccCC
Confidence            45678999999999999999999999777777655 8999999888877    589999999999999999999999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~g  159 (221)
                      +++|+|+|.++++.+...+..+..+....  ...|+++++||.|+++.-...+....     .....+.+..|+|.+|.|
T Consensus        86 ~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~G~G  165 (181)
T KOG0070|consen   86 QGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAISGEG  165 (181)
T ss_pred             cEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCCHHHHHhHhhhhccCCCCcEEeecccccccc
Confidence            99999999999999988777666665543  58999999999999876554443322     223456788899999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027607          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 v~~~~~~l~~~l~~  173 (221)
                      +.+.++|+...+..
T Consensus       166 L~egl~wl~~~~~~  179 (181)
T KOG0070|consen  166 LYEGLDWLSNNLKK  179 (181)
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987754

>cd01898 Obg Obg subfamily

Probab=99.93  E-value=1.1e-24  Score=157.14  Aligned_cols=154  Identities=16%  Similarity=0.121  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-EEEEEEecCCccc----cccccccc---cccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEK----FGGLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~D~~g~~~----~~~~~~~~---~~~~   86 (221)
                      +|+++|.+|||||||+++|.....  ......+.+.......+.... ..+.+|||||...    ...+...+   +..+
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~~--~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~   79 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAKP--KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERT   79 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCCc--cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence            589999999999999999765432  112222333333222222223 4899999999632    22233333   3459


Q ss_pred             cEEEEEEECCCh-hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhh-cCCeEEEecccCCCCh
Q 027607           87 QCAIIMFDVTAR-LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRK-KNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 d~~i~v~d~~~~-~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~gv  160 (221)
                      |++++|+|+++. .+++.+..|.+.+....   ...|+++|+||+|+.+.....+.. .+... .+.+++++|++++.|+
T Consensus        80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi  159 (170)
T cd01898          80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL  159 (170)
T ss_pred             CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCH
Confidence            999999999998 78888888888776553   368999999999986544433322 33333 3678999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|++|++.
T Consensus       160 ~~l~~~i~~~  169 (170)
T cd01898         160 DELLRKLAEL  169 (170)
T ss_pred             HHHHHHHHhh
Confidence            9999999874

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.92  E-value=1.2e-26  Score=160.27  Aligned_cols=163  Identities=31%  Similarity=0.568  Sum_probs=147.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+|++|+|..++||||+++++|.|-|...+..++|+++....+.+....+++.+||++|++++..+...|++.+.+.++
T Consensus        19 ~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vL   98 (246)
T KOG4252|consen   19 RAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQASVL   98 (246)
T ss_pred             hhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccceEE
Confidence            45899999999999999999999999999999999999988888888778888999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||+.++..||+....|++.+......+|.++|-||+|+.+....  .+...++...++.++.+|++..-|+..+|.+|+.
T Consensus        99 VFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV~~vF~YLae  178 (246)
T KOG4252|consen   99 VFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNVMHVFAYLAE  178 (246)
T ss_pred             EEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence            99999999999999999999999999999999999998654433  3445677888889999999999999999999998


Q ss_pred             HHhCC
Q 027607          170 KLAGD  174 (221)
Q Consensus       170 ~l~~~  174 (221)
                      .+.+.
T Consensus       179 K~~q~  183 (246)
T KOG4252|consen  179 KLTQQ  183 (246)
T ss_pred             HHHHH
Confidence            77553

>PRK15494 era GTPase Era; Provisional

Probab=99.92  E-value=7.8e-24  Score=167.64  Aligned_cols=167  Identities=17%  Similarity=0.265  Sum_probs=116.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-ccccc-------c
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRD-------G   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-~~~~~-------~   81 (221)
                      ..+.++|+++|.+|||||||+|+|++..+ ..+.+..++|+......+...+..+.+|||||.... ..+..       .
T Consensus        49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~-~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~  127 (339)
T PRK15494         49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKL-SIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWS  127 (339)
T ss_pred             ccceeEEEEEcCCCCCHHHHHHHHhCCce-eeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHH
Confidence            35678999999999999999999886655 344556666655544444444567899999997432 22211       2


Q ss_pred             ccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNY  158 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  158 (221)
                      .+..+|++++|+|+.+  ++.... .|+..+...  +.|.++|+||+|+.+.. ..+..+.+...+  ..++++||++|.
T Consensus       128 ~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~~-~~~~~~~l~~~~~~~~i~~iSAktg~  202 (339)
T PRK15494        128 SLHSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESKY-LNDIKAFLTENHPDSLLFPISALSGK  202 (339)
T ss_pred             HhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCcccc-HHHHHHHHHhcCCCcEEEEEeccCcc
Confidence            3678999999999765  344443 344444332  56788999999986542 233334443333  579999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCccccC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVES  182 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~e  182 (221)
                      |+++++++|...+..++..+.-+.
T Consensus       203 gv~eL~~~L~~~l~~~~~~~~~~~  226 (339)
T PRK15494        203 NIDGLLEYITSKAKISPWLYAEDD  226 (339)
T ss_pred             CHHHHHHHHHHhCCCCCCCCCCCC
Confidence            999999999999888887664443

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=9.3e-24  Score=162.90  Aligned_cols=162  Identities=15%  Similarity=0.081  Sum_probs=112.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~~~~   86 (221)
                      +|+++|.+|||||||+|+|++... ....+.+++|..........+...+.+|||||......        ....++..+
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~~~-~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~a   80 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQKI-SITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGV   80 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCcE-eecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhC
Confidence            689999999999999999776553 33455556666554443333446799999999754311        123457889


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~-~~~~~s~~~~~gv~~~~  164 (221)
                      |++++|+|+++..+..  ..+...+..  .+.|+++|+||+|+.+..... ....+....+. +++++||++|.|+++++
T Consensus        81 Dvvl~VvD~~~~~~~~--~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~  156 (270)
T TIGR00436        81 DLILFVVDSDQWNGDG--EFVLTKLQN--LKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLA  156 (270)
T ss_pred             CEEEEEEECCCCCchH--HHHHHHHHh--cCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHH
Confidence            9999999999876553  333333333  378999999999986432222 22233333333 78999999999999999


Q ss_pred             HHHHHHHhCCCCCcccc
Q 027607          165 LYLARKLAGDPNLHFVE  181 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~  181 (221)
                      ++|.+.+...|..+..+
T Consensus       157 ~~l~~~l~~~~~~~~~~  173 (270)
T TIGR00436       157 AFIEVHLPEGPFRYPED  173 (270)
T ss_pred             HHHHHhCCCCCCCCCCc
Confidence            99999887777555333

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.91  E-value=6.4e-23  Score=145.66  Aligned_cols=156  Identities=27%  Similarity=0.469  Sum_probs=119.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|.+|||||||+++++.+.+...+.++.+.+........++....+.+||+||+..+...+..++..++.++.+
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~   80 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRV   80 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEEE
Confidence            47999999999999999999998886666666666666665566666558899999999988888888888889999999


Q ss_pred             EECCCh-hhhccHH-HHHHHHHhhcC-CCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           93 FDVTAR-LTYKNVP-TWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        93 ~d~~~~-~s~~~~~-~~~~~~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +|.... .++.... .|...+..... +.|+++++||+|+.......... .+.......++++|+.+|.|+.+++.+|.
T Consensus        81 ~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231        81 FDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            998876 5555544 56555555444 78999999999987644333222 23334456799999999999999998763

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>PTZ00099 rab6; Provisional

Probab=99.91  E-value=7.8e-23  Score=147.83  Aligned_cols=140  Identities=30%  Similarity=0.540  Sum_probs=121.1

Q ss_pred             CccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhc
Q 027607           36 GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC  115 (221)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~  115 (221)
                      +.|...+.+|.|.++....+.++++.+.+.+|||+|++.+..++..+++++|++++|||++++.+|+.+..|+..+....
T Consensus         3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~   82 (176)
T PTZ00099          3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER   82 (176)
T ss_pred             CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence            45667788999999988888888889999999999999999999999999999999999999999999999998886553


Q ss_pred             -CCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          116 -ENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       116 -~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                       ...|+++|+||+|+.. +. ...+...++...++.++++||++|.|+.++|.+|++.+.+.+
T Consensus        83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence             5789999999999864 22 233455677777889999999999999999999999886655

>cd01878 HflX HflX subfamily

Probab=99.91  E-value=2.9e-23  Score=154.14  Aligned_cols=155  Identities=15%  Similarity=0.085  Sum_probs=107.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee--eEEEecCcEEEEEEEecCCccccccc--cc-----
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEKFGGL--RD-----   80 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~D~~g~~~~~~~--~~-----   80 (221)
                      ..+.++|+|+|++|||||||+++++.+.....  ...+.+...  ....+.+ ...+.+|||||.......  ..     
T Consensus        38 ~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~  114 (204)
T cd01878          38 RSGIPTVALVGYTNAGKSTLFNALTGADVYAE--DQLFATLDPTTRRLRLPD-GREVLLTDTVGFIRDLPHQLVEAFRST  114 (204)
T ss_pred             hcCCCeEEEECCCCCCHHHHHHHHhcchhccC--CccceeccceeEEEEecC-CceEEEeCCCccccCCCHHHHHHHHHH
Confidence            34568999999999999999999887653221  111222222  2222332 237899999997321110  01     


Q ss_pred             -cccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCC
Q 027607           81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        81 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                       ..+..+|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+.....   ........+++++|+++|.
T Consensus       115 ~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~---~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE---ERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH---HHhhcCCCceEEEEcCCCC
Confidence             12568999999999999888877766766665433 368999999999986543222   3344556789999999999


Q ss_pred             ChHHHHHHHHHH
Q 027607          159 NFEKPFLYLARK  170 (221)
Q Consensus       159 gv~~~~~~l~~~  170 (221)
                      |+.+++.+|.+.
T Consensus       192 gi~~l~~~L~~~  203 (204)
T cd01878         192 GLDELLEAIEEL  203 (204)
T ss_pred             CHHHHHHHHHhh
Confidence            999999999875

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04171 SelB SelB subfamily

Probab=99.90  E-value=6.2e-23  Score=147.03  Aligned_cols=153  Identities=14%  Similarity=0.038  Sum_probs=99.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC---ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ..|+++|++|||||||+++|...   .+.....+....+.......+.. ...+.+|||||++.+......++..+|+++
T Consensus         1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii   79 (164)
T cd04171           1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL   79 (164)
T ss_pred             CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence            36899999999999999997742   22211112222222222233331 468999999999887666666788999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhh---cCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRK---KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~---~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|+++....+. ...+..+.. ....|+++|+||+|+.+...    ..+.......   .+.+++++|+++|.|++++
T Consensus        80 ~V~d~~~~~~~~~-~~~~~~~~~-~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l  157 (164)
T cd04171          80 LVVAADEGIMPQT-REHLEILEL-LGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEEL  157 (164)
T ss_pred             EEEECCCCccHhH-HHHHHHHHH-hCCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHH
Confidence            9999987321111 111111211 12359999999999865421    1222233332   4678999999999999999


Q ss_pred             HHHHHH
Q 027607          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      +..+.+
T Consensus       158 ~~~l~~  163 (164)
T cd04171         158 KEYLDE  163 (164)
T ss_pred             HHHHhh
Confidence            988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.90  E-value=2e-23  Score=146.27  Aligned_cols=133  Identities=20%  Similarity=0.211  Sum_probs=94.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----ccccccccccccccEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLRDGYYIHGQCA   89 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----~~~~~~~~~~~~~d~~   89 (221)
                      ||+++|++|||||||+++|..+.+.  +.++.+.       .+.     -.+|||||..     .+..+. ..++++|++
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~~-------~~~-----~~~iDt~G~~~~~~~~~~~~~-~~~~~ad~v   66 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQAV-------EYN-----DGAIDTPGEYVENRRLYSALI-VTAADADVI   66 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCccc--cccceeE-------EEc-----CeeecCchhhhhhHHHHHHHH-HHhhcCCEE
Confidence            8999999999999999998766431  2222221       111     1689999973     222222 247899999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ++|+|++++.++... .|....     ..|+++|+||+|+.++... ++...++...+. +++++|+++|.|++++|.+|
T Consensus        67 ilv~d~~~~~s~~~~-~~~~~~-----~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        67 ALVQSATDPESRFPP-GFASIF-----VKPVIGLVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEEecCCCCCcCCCh-hHHHhc-----cCCeEEEEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            999999999988652 343322     3499999999998654333 233445555555 79999999999999999887


Q ss_pred             H
Q 027607          168 A  168 (221)
Q Consensus       168 ~  168 (221)
                      +
T Consensus       141 ~  141 (142)
T TIGR02528       141 N  141 (142)
T ss_pred             h
Confidence            5

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=5.3e-23  Score=161.91  Aligned_cols=159  Identities=18%  Similarity=0.132  Sum_probs=117.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCcccc----cccccc---ccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF----GGLRDG---YYIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~----~~~~~~---~~~~~   86 (221)
                      .|+++|.+|||||||++++....  +.....+++|..+....+.. ....+.+||+||...-    ..+...   .+..+
T Consensus       160 dVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a  237 (335)
T PRK12299        160 DVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIERT  237 (335)
T ss_pred             CEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhhhc
Confidence            58999999999999999977543  23444555666666555443 3457999999996421    122223   34578


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccc-cHH-HHHHHhhcCCeEEEecccCCCChH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++++|+|+++..+++.+..|...+..+.   .++|+++|+||+|+.+... ..+ ...+....+.+++++||+++.|++
T Consensus       238 ~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~  317 (335)
T PRK12299        238 RLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLD  317 (335)
T ss_pred             CEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHH
Confidence            99999999998878888888988887654   3789999999999865432 222 223344556789999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027607          162 KPFLYLARKLAGDP  175 (221)
Q Consensus       162 ~~~~~l~~~l~~~~  175 (221)
                      +++.+|.+.+...+
T Consensus       318 eL~~~L~~~l~~~~  331 (335)
T PRK12299        318 ELLRALWELLEEAR  331 (335)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999876543

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.90  E-value=2.1e-23  Score=145.81  Aligned_cols=147  Identities=17%  Similarity=0.204  Sum_probs=104.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------ccccc--cc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~--~~   85 (221)
                      ++|+++|.||||||||+|+|.+..  ....+.+|+|.......+......+.++|+||.......      ...++  ..
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~   78 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEK   78 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcC
Confidence            589999999999999999966555  446778888888887776655688999999995433222      12233  57


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      .|+++.|+|+++.+.-..+   ...+..  -+.|+++|+||+|...+ ........+....+++++++|+.++.|+++++
T Consensus        79 ~D~ii~VvDa~~l~r~l~l---~~ql~e--~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~  153 (156)
T PF02421_consen   79 PDLIIVVVDATNLERNLYL---TLQLLE--LGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELK  153 (156)
T ss_dssp             SSEEEEEEEGGGHHHHHHH---HHHHHH--TTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHH
T ss_pred             CCEEEEECCCCCHHHHHHH---HHHHHH--cCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHH
Confidence            8999999999886432222   222222  28999999999998543 33334556777789999999999999999988


Q ss_pred             HHH
Q 027607          165 LYL  167 (221)
Q Consensus       165 ~~l  167 (221)
                      ..|
T Consensus       154 ~~I  156 (156)
T PF02421_consen  154 DAI  156 (156)
T ss_dssp             HHH
T ss_pred             hhC
Confidence            764

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.90  E-value=5.3e-23  Score=151.53  Aligned_cols=146  Identities=16%  Similarity=0.218  Sum_probs=105.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc--CccCCcc------------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT--GEFEKKY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR   79 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~   79 (221)
                      -+|+++|.+|||||||+++|+.  +.+...+            ..+.|.+.......+..+...+.+|||||++.+...+
T Consensus         3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~   82 (194)
T cd01891           3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV   82 (194)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence            3899999999999999999886  4443332            2345666666666666778899999999999998888


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHHHH-------hhcCCeE
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFH-------RKKNLQY  149 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~-------~~~~~~~  149 (221)
                      ..+++.+|++++|+|+++.. +.....++.....  .+.|+++|+||+|+......   .+.....       ...++++
T Consensus        83 ~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  159 (194)
T cd01891          83 ERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE--LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPV  159 (194)
T ss_pred             HHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCE
Confidence            99999999999999998742 2222233333322  37899999999998643321   1222222       1236789


Q ss_pred             EEecccCCCChHH
Q 027607          150 YEISAKSNYNFEK  162 (221)
Q Consensus       150 ~~~s~~~~~gv~~  162 (221)
                      +++|+++|.|+.+
T Consensus       160 v~~Sa~~g~~~~~  172 (194)
T cd01891         160 LYASAKNGWASLN  172 (194)
T ss_pred             EEeehhccccccc
Confidence            9999999988733

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PRK04213 GTP-binding protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=151.77  Aligned_cols=155  Identities=20%  Similarity=0.177  Sum_probs=101.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc-----------ccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-----------EKFGGLR   79 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~-----------~~~~~~~   79 (221)
                      .+.++|+++|.+|||||||++++.++.+.  .....+++.........    .+.+|||||.           +.++..+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~   80 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKKVR--VGKRPGVTRKPNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEI   80 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCceeeCceEEeec----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence            35689999999999999999998876643  23344666655544333    5899999993           4444444


Q ss_pred             ccccc----cccEEEEEEECCChhhhcc---------H-HHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc
Q 027607           80 DGYYI----HGQCAIIMFDVTARLTYKN---------V-PTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK  145 (221)
Q Consensus        80 ~~~~~----~~d~~i~v~d~~~~~s~~~---------~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~  145 (221)
                      ..++.    .++++++|+|.+....+..         . ..+...+..  .+.|+++|+||+|+.+.. ......+....
T Consensus        81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-~~~~~~~~~~~  157 (201)
T PRK04213         81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-DEVLDEIAERL  157 (201)
T ss_pred             HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-HHHHHHHHHHh
Confidence            44443    3578888888764322100         0 111222222  379999999999986543 12222333333


Q ss_pred             CC---------eEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          146 NL---------QYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       146 ~~---------~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      ++         .++++||++| |+++++++|++.+....
T Consensus       158 ~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~  195 (201)
T PRK04213        158 GLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAK  195 (201)
T ss_pred             cCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCcc
Confidence            33         5799999999 99999999999865543

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.89  E-value=4.1e-22  Score=149.55  Aligned_cols=164  Identities=34%  Similarity=0.521  Sum_probs=132.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|+.|||||||+++|..+.+...+.++.+..+...........+.+.+|||+|+++++.++..|+..++++++
T Consensus         4 ~~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~   83 (219)
T COG1100           4 KEFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILI   83 (219)
T ss_pred             ceEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence            44999999999999999999999999988888888777766666666558889999999999999999999999999999


Q ss_pred             EEECCC-hhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccH-------------HH-HHHHhh---cCCeEEEe
Q 027607           92 MFDVTA-RLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA-------------KQ-VTFHRK---KNLQYYEI  152 (221)
Q Consensus        92 v~d~~~-~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~-------------~~-~~~~~~---~~~~~~~~  152 (221)
                      |+|.++ ..+++....|...+.... ...|+++|+||+|+..+....             .. ......   ....++.+
T Consensus        84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (219)
T COG1100          84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET  163 (219)
T ss_pred             EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence            999999 445666778888887766 479999999999997653211             11 111111   13348999


Q ss_pred             ccc--CCCChHHHHHHHHHHHhCCC
Q 027607          153 SAK--SNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       153 s~~--~~~gv~~~~~~l~~~l~~~~  175 (221)
                      |+.  .+.++.++|..+.+.+....
T Consensus       164 s~~~~~~~~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         164 SAKSLTGPNVNELFKELLRKLLEEI  188 (219)
T ss_pred             ecccCCCcCHHHHHHHHHHHHHHhh
Confidence            999  99999999999999886543

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.89  E-value=2.1e-22  Score=164.09  Aligned_cols=153  Identities=23%  Similarity=0.240  Sum_probs=112.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------cccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~   82 (221)
                      .+.++|+++|++|||||||+|+|+.... ..+....+++.+.....+..++..+.+|||||.......        ...+
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~~~-aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~  279 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQDR-AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKA  279 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence            3558999999999999999999776532 233445666666555544445567899999998654332        2356


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++.+|++++|+|++++.+++..  |+..+..  .+.|+++|+||+|+...    +...+....+.+++.+|+++ .|+++
T Consensus       280 ~~~aD~il~V~D~s~~~s~~~~--~l~~~~~--~~~piIlV~NK~Dl~~~----~~~~~~~~~~~~~~~vSak~-~gI~~  350 (442)
T TIGR00450       280 IKQADLVIYVLDASQPLTKDDF--LIIDLNK--SKKPFILVLNKIDLKIN----SLEFFVSSKVLNSSNLSAKQ-LKIKA  350 (442)
T ss_pred             HhhCCEEEEEEECCCCCChhHH--HHHHHhh--CCCCEEEEEECccCCCc----chhhhhhhcCCceEEEEEec-CCHHH
Confidence            7899999999999988776654  5554432  37899999999998644    12233455667889999998 69999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +++.|.+.+..
T Consensus       351 ~~~~L~~~i~~  361 (442)
T TIGR00450       351 LVDLLTQKINA  361 (442)
T ss_pred             HHHHHHHHHHH
Confidence            99999888765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.89  E-value=3e-22  Score=160.57  Aligned_cols=162  Identities=16%  Similarity=0.125  Sum_probs=116.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccc----cc---ccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG----LR---DGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~----~~---~~~~~~~   86 (221)
                      .|+|+|.||||||||+|+|+...  ....+.+++|.......+... ...+.++||||...-..    +.   ...+..+
T Consensus       161 dValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ra  238 (390)
T PRK12298        161 DVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKHLERC  238 (390)
T ss_pred             cEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHHHHhC
Confidence            69999999999999999977544  355667777777776665443 34699999999643211    11   1236788


Q ss_pred             cEEEEEEECC---ChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhhcC--CeEEEecccCC
Q 027607           87 QCAIIMFDVT---ARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKN--LQYYEISAKSN  157 (221)
Q Consensus        87 d~~i~v~d~~---~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~--~~~~~~s~~~~  157 (221)
                      +++++|+|++   ....++....|...+..+.   ...|+++|+||+|+.......+.. .+....+  ..++.+||+++
T Consensus       239 dvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg  318 (390)
T PRK12298        239 RVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASG  318 (390)
T ss_pred             CEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            9999999988   4455666667777766543   368999999999986543222222 2333333  36899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCc
Q 027607          158 YNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      .|+++++.+|.+.+...+..+
T Consensus       319 ~GIdeLl~~I~~~L~~~~~~~  339 (390)
T PRK12298        319 LGVKELCWDLMTFIEENPREE  339 (390)
T ss_pred             cCHHHHHHHHHHHhhhCcccC
Confidence            999999999999887766543

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.89  E-value=2.6e-22  Score=164.39  Aligned_cols=150  Identities=18%  Similarity=0.193  Sum_probs=110.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~   83 (221)
                      ..++|+++|.+|||||||+|+|+.... ....+..+++.+.....+...+..+.+|||||.......        ...++
T Consensus       214 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~  292 (449)
T PRK05291        214 EGLKVVIAGRPNVGKSSLLNALLGEER-AIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAI  292 (449)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHH
Confidence            458999999999999999999876543 223445555655544444444568899999998654332        12357


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ..+|++++|+|++++.+++....|..     ..+.|+++|+||+|+.......      ...+.+++.+|+++|.|++++
T Consensus       293 ~~aD~il~VvD~s~~~s~~~~~~l~~-----~~~~piiiV~NK~DL~~~~~~~------~~~~~~~i~iSAktg~GI~~L  361 (449)
T PRK05291        293 EEADLVLLVLDASEPLTEEDDEILEE-----LKDKPVIVVLNKADLTGEIDLE------EENGKPVIRISAKTGEGIDEL  361 (449)
T ss_pred             HhCCEEEEEecCCCCCChhHHHHHHh-----cCCCCcEEEEEhhhccccchhh------hccCCceEEEEeeCCCCHHHH
Confidence            88999999999998877765444433     3478999999999986432221      334567899999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      +++|.+.+..
T Consensus       362 ~~~L~~~l~~  371 (449)
T PRK05291        362 REAIKELAFG  371 (449)
T ss_pred             HHHHHHHHhh
Confidence            9999998754

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.89  E-value=4.7e-22  Score=143.07  Aligned_cols=154  Identities=16%  Similarity=0.160  Sum_probs=104.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      .|+|+|++|||||||+++|..+.+..........+......... .....+.+|||||+..+...+..++..+|++++|+
T Consensus         2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~   81 (168)
T cd01887           2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV   81 (168)
T ss_pred             EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence            59999999999999999988776654322222222222222222 13578999999999888888788889999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH--HHH-HHH------hhcCCeEEEecccCCCChHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA--KQV-TFH------RKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~-~~~------~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |+++....+.. ..+..+..  .+.|+++|+||+|+.......  ... ...      ....++++++|+.+|.|+.+++
T Consensus        82 d~~~~~~~~~~-~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  158 (168)
T cd01887          82 AADDGVMPQTI-EAIKLAKA--ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLL  158 (168)
T ss_pred             ECCCCccHHHH-HHHHHHHH--cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHH
Confidence            99875322211 11222222  378999999999986432111  111 111      1123679999999999999999


Q ss_pred             HHHHHHH
Q 027607          165 LYLARKL  171 (221)
Q Consensus       165 ~~l~~~l  171 (221)
                      ++|.+..
T Consensus       159 ~~l~~~~  165 (168)
T cd01887         159 EAILLLA  165 (168)
T ss_pred             HHHHHhh
Confidence            9998753

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.89  E-value=6e-22  Score=139.47  Aligned_cols=150  Identities=39%  Similarity=0.662  Sum_probs=117.7

Q ss_pred             EEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECC
Q 027607           18 IVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        18 v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~   96 (221)
                      |+|++|+|||||+++++.... .....++. ................+.+||++|..........+++.+|++++|+|++
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~   79 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT   79 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence            589999999999999887666 34444444 6666666666667889999999998887777778889999999999999


Q ss_pred             ChhhhccHHHHH--HHHHhhcCCCCEEEEEeCCCcCCccccHH---HHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           97 ARLTYKNVPTWH--RDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        97 ~~~s~~~~~~~~--~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +..++.....|.  ........+.|+++|+||+|+........   ..........+++.+|+..+.|+.+++++|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882          80 DRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             CHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            999888887762  22223346899999999999876443333   2344555678899999999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=6.8e-22  Score=140.48  Aligned_cols=147  Identities=18%  Similarity=0.153  Sum_probs=105.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      ++|+++|++|+|||||+++++.... ....+..+++.......+......+.+|||||.......        ....+..
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~   80 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGRDR-AIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE   80 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCCce-EeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence            5899999999999999999776543 222334444444333333334568899999997654322        1235678


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +|++++|+|++++.+......+..     ....|+++|+||+|+......     .......+++++|+.++.|+.+++.
T Consensus        81 ~~~~v~v~d~~~~~~~~~~~~~~~-----~~~~~vi~v~nK~D~~~~~~~-----~~~~~~~~~~~~Sa~~~~~v~~l~~  150 (157)
T cd04164          81 ADLVLFVIDASRGLDEEDLEILEL-----PADKPIIVVLNKSDLLPDSEL-----LSLLAGKPIIAISAKTGEGLDELKE  150 (157)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh-----hcCCCEEEEEEchhcCCcccc-----ccccCCCceEEEECCCCCCHHHHHH
Confidence            999999999998776655544332     348999999999998754333     3344567899999999999999999


Q ss_pred             HHHHHH
Q 027607          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|...+
T Consensus       151 ~l~~~~  156 (157)
T cd04164         151 ALLELA  156 (157)
T ss_pred             HHHHhh
Confidence            988753

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.88  E-value=8.6e-22  Score=140.27  Aligned_cols=146  Identities=16%  Similarity=0.137  Sum_probs=101.5

Q ss_pred             EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------cccccc--cccEE
Q 027607           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYYI--HGQCA   89 (221)
Q Consensus        18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~~--~~d~~   89 (221)
                      ++|.+|||||||++++..........+..+.+.....+.++  +..+.+|||||...+...      +..++.  .+|++
T Consensus         1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v   78 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG--GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI   78 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC--CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence            58999999999999987665332222222223333333333  367899999998766543      344554  89999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      ++|+|+++....   ..+...+..  .++|+++|+||+|+.+.. .......+....+.+++++|+.+|.|+.++++++.
T Consensus        79 i~v~d~~~~~~~---~~~~~~~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~  153 (158)
T cd01879          79 VNVVDATNLERN---LYLTLQLLE--LGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIA  153 (158)
T ss_pred             EEEeeCCcchhH---HHHHHHHHH--cCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHH
Confidence            999999875432   233333332  378999999999986543 22233455566678999999999999999999998


Q ss_pred             HH
Q 027607          169 RK  170 (221)
Q Consensus       169 ~~  170 (221)
                      +.
T Consensus       154 ~~  155 (158)
T cd01879         154 EL  155 (158)
T ss_pred             HH
Confidence            75

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.88  E-value=1.2e-22  Score=136.09  Aligned_cols=155  Identities=22%  Similarity=0.381  Sum_probs=126.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      .++.+.++|..+||||||+|.+..|.+.....++.|.....+    ..+.+.+.+||.+|+..++++|..|++.++++++
T Consensus        19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnmrk~----tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY   94 (186)
T KOG0075|consen   19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNMRKV----TKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVY   94 (186)
T ss_pred             heeeEEEEeeccCCcceEEEEEeeccchhhhcccccceeEEe----ccCceEEEEEecCCCccHHHHHHHHhhcCcEEEE
Confidence            468899999999999999999888888888888888766654    3478899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |+|+.++......+..+..+...  ..++|+++.+||.|+++.-.........     ....+.++.+|+++..+++-+.
T Consensus        95 ~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siScke~~Nid~~~  174 (186)
T KOG0075|consen   95 VVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSISCKEKVNIDITL  174 (186)
T ss_pred             EeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccHHHHHHHhCccccccceEEEEEEEEcCCccHHHHH
Confidence            99999988776666555554433  2589999999999998765444433222     2234568999999999999999


Q ss_pred             HHHHHH
Q 027607          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      .||.+.
T Consensus       175 ~Wli~h  180 (186)
T KOG0075|consen  175 DWLIEH  180 (186)
T ss_pred             HHHHHH
Confidence            999875

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.88  E-value=6e-22  Score=134.60  Aligned_cols=114  Identities=27%  Similarity=0.493  Sum_probs=87.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccC--CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ||+|+|++|||||||+++|+.+...  .......+.+..............+.+||++|++.+...+..++..+|++++|
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv   80 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILV   80 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEE
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEEE
Confidence            7999999999999999999888775  22333444445544556666666799999999988887777779999999999


Q ss_pred             EECCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCC
Q 027607           93 FDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~---~~~~~~~~~~~p~ivv~nK~D  128 (221)
                      ||++++.+++.+..+   +..+.....+.|+++|+||.|
T Consensus        81 ~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   81 YDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             EECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             EcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            999999999887544   555555556899999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>COG1159 Era GTPase [General function prediction only]

Probab=99.88  E-value=2.9e-21  Score=145.17  Aligned_cols=168  Identities=17%  Similarity=0.152  Sum_probs=124.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~   81 (221)
                      ..+.--|+++|.||||||||+|+++ |......++.+.+|+......+..+..++.++||||...-+...        ..
T Consensus         3 ~~ksGfVaIiGrPNvGKSTLlN~l~-G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~   81 (298)
T COG1159           3 KFKSGFVAIIGRPNVGKSTLLNALV-GQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS   81 (298)
T ss_pred             CceEEEEEEEcCCCCcHHHHHHHHh-cCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence            4566789999999999999999955 55567888899999999988888888999999999965433222        33


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-HHHHHHHhh--cCCeEEEecccCCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-AKQVTFHRK--KNLQYYEISAKSNY  158 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~--~~~~~~~~s~~~~~  158 (221)
                      .+..+|+++||+|++....-.+ ...++.+..  .+.|+++++||+|....... ....+....  .....+++||+.|.
T Consensus        82 sl~dvDlilfvvd~~~~~~~~d-~~il~~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~  158 (298)
T COG1159          82 ALKDVDLILFVVDADEGWGPGD-EFILEQLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGD  158 (298)
T ss_pred             HhccCcEEEEEEeccccCCccH-HHHHHHHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccC
Confidence            4778999999999987543221 122333333  36899999999997654442 222222222  23468999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCcccc
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~  181 (221)
                      |+..+.+.+...+..++..+.-|
T Consensus       159 n~~~L~~~i~~~Lpeg~~~yp~d  181 (298)
T COG1159         159 NVDTLLEIIKEYLPEGPWYYPED  181 (298)
T ss_pred             CHHHHHHHHHHhCCCCCCcCChh
Confidence            99999999999988888766433

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=7.3e-22  Score=131.24  Aligned_cols=160  Identities=21%  Similarity=0.318  Sum_probs=130.5

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      +.+..++++|+.+|-.++||||++..+..+.. ....+|.|+....+++    +++.+.+||.+|+...+.+|++|+...
T Consensus        11 k~f~~KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGFnvetVty----kN~kfNvwdvGGqd~iRplWrhYy~gt   85 (180)
T KOG0071|consen   11 KIFGNKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVTY----KNVKFNVWDVGGQDKIRPLWRHYYTGT   85 (180)
T ss_pred             HHhCcccceEEEEecccCCceehhhHHhcCCC-cccccccceeEEEEEe----eeeEEeeeeccCchhhhHHHHhhccCC
Confidence            34567899999999999999999999776654 4557788888887776    789999999999999999999999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~g  159 (221)
                      .++|||+|+.+....+..+..+..+...  ....++++..||.|+++....++....     .+...+.+.++++.+|.|
T Consensus        86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~gdg  165 (180)
T KOG0071|consen   86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSGDG  165 (180)
T ss_pred             ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhccccccCCccEeeccccccchh
Confidence            9999999999887777666555544332  247899999999999987776665433     333456688899999999


Q ss_pred             hHHHHHHHHHHH
Q 027607          160 FEKPFLYLARKL  171 (221)
Q Consensus       160 v~~~~~~l~~~l  171 (221)
                      +.+-+.||...+
T Consensus       166 L~eglswlsnn~  177 (180)
T KOG0071|consen  166 LKEGLSWLSNNL  177 (180)
T ss_pred             HHHHHHHHHhhc
Confidence            999999988753

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.88  E-value=8.6e-22  Score=154.97  Aligned_cols=156  Identities=16%  Similarity=0.163  Sum_probs=110.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccc----ccccccc---ccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKF----GGLRDGY---YIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~----~~~~~~~---~~~   85 (221)
                      -.|+++|.+|||||||++++.....  .....+.+|..+....+... ...+.+||+||....    ..+...+   +..
T Consensus       158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhier  235 (329)
T TIGR02729       158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIER  235 (329)
T ss_pred             ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHHh
Confidence            4689999999999999999776542  22333344444443333322 378999999997432    1233334   346


Q ss_pred             ccEEEEEEECCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccCCC
Q 027607           86 GQCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        86 ~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++++++|+|+++.   .+++.+..|...+..+.   .++|+++|+||+|+.......+.. .+....+.+++++||+++.
T Consensus       236 ad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~  315 (329)
T TIGR02729       236 TRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGE  315 (329)
T ss_pred             hCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCc
Confidence            8999999999976   56777777777776543   478999999999986543322222 3444556789999999999


Q ss_pred             ChHHHHHHHHHHH
Q 027607          159 NFEKPFLYLARKL  171 (221)
Q Consensus       159 gv~~~~~~l~~~l  171 (221)
                      |+++++.+|.+.+
T Consensus       316 GI~eL~~~I~~~l  328 (329)
T TIGR02729       316 GLDELLYALAELL  328 (329)
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.88  E-value=5.1e-22  Score=143.89  Aligned_cols=151  Identities=15%  Similarity=0.111  Sum_probs=103.4

Q ss_pred             EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----ccccc---ccccccccEE
Q 027607           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLR---DGYYIHGQCA   89 (221)
Q Consensus        18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~---~~~~~~~d~~   89 (221)
                      ++|++|||||||+++|.+...  ......+++.......+... ...+.+|||||...    ...+.   ..++..+|++
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i   78 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI   78 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence            589999999999999876653  12222333333322223233 56789999999632    12222   2346789999


Q ss_pred             EEEEECCCh------hhhccHHHHHHHHHhhc--------CCCCEEEEEeCCCcCCccccHHH--HHHHhhcCCeEEEec
Q 027607           90 IIMFDVTAR------LTYKNVPTWHRDLCRVC--------ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~------~s~~~~~~~~~~~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~--~~~~~~~~~~~~~~s  153 (221)
                      ++|+|+++.      .++.....|...+....        .+.|+++|+||+|+.........  ..........++.+|
T Consensus        79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S  158 (176)
T cd01881          79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS  158 (176)
T ss_pred             EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence            999999987      46666666666665432        37899999999998654333222  233444567799999


Q ss_pred             ccCCCChHHHHHHHHHH
Q 027607          154 AKSNYNFEKPFLYLARK  170 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~  170 (221)
                      ++++.|++++++++.+.
T Consensus       159 a~~~~gl~~l~~~l~~~  175 (176)
T cd01881         159 AKTEEGLDELIRAIYEL  175 (176)
T ss_pred             hhhhcCHHHHHHHHHhh
Confidence            99999999999988763

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.88  E-value=1.1e-21  Score=165.14  Aligned_cols=155  Identities=15%  Similarity=0.168  Sum_probs=115.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCc-------cCCcccC------CcceeeeeeEEEe-----cCcEEEEEEEecCCcccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGE-------FEKKYEP------TIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~-------~~~~~~~------~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~   75 (221)
                      -+|+++|+.++|||||+++|+...       +...+..      ..|.+.......+     ++..+.+.+|||||+.++
T Consensus         4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF   83 (595)
T TIGR01393         4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   83 (595)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence            489999999999999999988642       1122222      2366666544433     345689999999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEe
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (221)
                      ...+..+++.+|++++|+|+++..+.+....|.....   .+.|+++|+||+|+.+........++....++   .++++
T Consensus        84 ~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~ipiIiViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~v  160 (595)
T TIGR01393        84 SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---NDLEIIPVINKIDLPSADPERVKKEIEEVIGLDASEAILA  160 (595)
T ss_pred             HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cCCCEEEEEECcCCCccCHHHHHHHHHHHhCCCcceEEEe
Confidence            8888889999999999999999877766666654432   37899999999998653322222233333444   48999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l  171 (221)
                      ||++|.|+++++++|.+.+
T Consensus       161 SAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       161 SAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             eccCCCCHHHHHHHHHHhC
Confidence            9999999999999999865

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.88  E-value=9.4e-22  Score=162.57  Aligned_cols=153  Identities=22%  Similarity=0.221  Sum_probs=108.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~~~   85 (221)
                      .+|+|+|.+|||||||+|+|+.+.. ..+..+.|++.+.........+..+.+|||||.+.        +...+..++..
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~-~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~  117 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRRE-AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRT  117 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCc-ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHh
Confidence            6899999999999999999876553 33456777776665555444456789999999753        22233456789


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPF  164 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~  164 (221)
                      +|++++|+|+++..++.. ..+...+..  .++|+++|+||+|+.....  +...+. ..++ ..+++||++|.|+.+++
T Consensus       118 aD~il~VvD~~~~~s~~~-~~i~~~l~~--~~~piilV~NK~Dl~~~~~--~~~~~~-~~g~~~~~~iSA~~g~gi~eL~  191 (472)
T PRK03003        118 ADAVLFVVDATVGATATD-EAVARVLRR--SGKPVILAANKVDDERGEA--DAAALW-SLGLGEPHPVSALHGRGVGDLL  191 (472)
T ss_pred             CCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECccCCccch--hhHHHH-hcCCCCeEEEEcCCCCCcHHHH
Confidence            999999999998765432 233333433  3799999999999864321  111121 2232 35789999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      ++|+..+..
T Consensus       192 ~~i~~~l~~  200 (472)
T PRK03003        192 DAVLAALPE  200 (472)
T ss_pred             HHHHhhccc
Confidence            999988754

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.88  E-value=2.5e-21  Score=156.08  Aligned_cols=159  Identities=16%  Similarity=0.171  Sum_probs=114.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----cccccccc---cccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~~~~---~~~~   86 (221)
                      .|+++|.+|||||||+++++....  .....+.+|..+....+... ...+.+||+||...    ...+...+   +..+
T Consensus       160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhier~  237 (424)
T PRK12297        160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIERT  237 (424)
T ss_pred             cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHhhC
Confidence            799999999999999999776542  23445556666655544333 46799999999643    12233334   4458


Q ss_pred             cEEEEEEECCCh---hhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      +++++|+|+++.   .+++....|...+..+.   .++|.++|+||+|+...  ......+....+.+++++||+++.|+
T Consensus       238 ~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~--~e~l~~l~~~l~~~i~~iSA~tgeGI  315 (424)
T PRK12297        238 RVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA--EENLEEFKEKLGPKVFPISALTGQGL  315 (424)
T ss_pred             CEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC--HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence            999999999864   56666677777776653   37899999999998532  22233444445578999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC
Q 027607          161 EKPFLYLARKLAGDPNL  177 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~  177 (221)
                      ++++.+|.+.+...+..
T Consensus       316 ~eL~~~L~~~l~~~~~~  332 (424)
T PRK12297        316 DELLYAVAELLEETPEF  332 (424)
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            99999999988776643

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.88  E-value=1.1e-21  Score=155.68  Aligned_cols=150  Identities=15%  Similarity=0.112  Sum_probs=103.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecCcEEEEEEEecCCccc---------ccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRFYCWDTAGQEK---------FGGLRDG   81 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~D~~g~~~---------~~~~~~~   81 (221)
                      -++|+++|.+|||||||+|+|++....  .....+.|.+...  +.+. ++..+.+|||+|...         +... ..
T Consensus       189 ~~~ValvG~~NvGKSSLln~L~~~~~~--v~~~~~tT~d~~~~~i~~~-~~~~i~l~DT~G~~~~l~~~lie~f~~t-le  264 (351)
T TIGR03156       189 VPTVALVGYTNAGKSTLFNALTGADVY--AADQLFATLDPTTRRLDLP-DGGEVLLTDTVGFIRDLPHELVAAFRAT-LE  264 (351)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCcee--eccCCccccCCEEEEEEeC-CCceEEEEecCcccccCCHHHHHHHHHH-HH
Confidence            489999999999999999998765432  1222333333333  3332 345899999999721         1111 12


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      .+.++|++++|+|++++.++.....|...+.... .+.|+++|+||+|+.+...   . ........+++.+||++|.|+
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---v-~~~~~~~~~~i~iSAktg~GI  340 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---I-ERLEEGYPEAVFVSAKTGEGL  340 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh---H-HHHHhCCCCEEEEEccCCCCH
Confidence            3678999999999999887777666655554432 4789999999999864211   1 111122346899999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      ++++.+|.+.
T Consensus       341 ~eL~~~I~~~  350 (351)
T TIGR03156       341 DLLLEAIAER  350 (351)
T ss_pred             HHHHHHHHhh
Confidence            9999988764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PRK00089 era GTPase Era; Reviewed

Probab=99.88  E-value=4.6e-21  Score=149.81  Aligned_cols=164  Identities=16%  Similarity=0.159  Sum_probs=111.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~   82 (221)
                      .+.-.|+|+|++|||||||+|++++... ....+...++..............+.+|||||......        .....
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~g~~~-~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~   81 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALVGQKI-SIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS   81 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhCCce-eecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence            3567899999999999999999775544 33444555555554444443457899999999654321        22334


Q ss_pred             cccccEEEEEEECCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHH-HHHhhc-CCeEEEecccCCC
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNY  158 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~  158 (221)
                      +..+|++++|+|+++..  .....+ ...+..  .+.|+++|+||+|+.. ........ .+.... ...++++|++++.
T Consensus        82 ~~~~D~il~vvd~~~~~--~~~~~~i~~~l~~--~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~  157 (292)
T PRK00089         82 LKDVDLVLFVVDADEKI--GPGDEFILEKLKK--VKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD  157 (292)
T ss_pred             HhcCCEEEEEEeCCCCC--ChhHHHHHHHHhh--cCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence            67899999999998832  222222 222221  3689999999999873 22222222 233322 3678999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCcc
Q 027607          159 NFEKPFLYLARKLAGDPNLHF  179 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~  179 (221)
                      |+++++++|.+.+..++..+.
T Consensus       158 gv~~L~~~L~~~l~~~~~~y~  178 (292)
T PRK00089        158 NVDELLDVIAKYLPEGPPYYP  178 (292)
T ss_pred             CHHHHHHHHHHhCCCCCCCCC
Confidence            999999999998877775543

>cd01894 EngA1 EngA1 subfamily

Probab=99.87  E-value=1.3e-21  Score=139.06  Aligned_cols=147  Identities=20%  Similarity=0.143  Sum_probs=100.5

Q ss_pred             EEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------ccccccccccE
Q 027607           17 VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYYIHGQC   88 (221)
Q Consensus        17 ~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~~~~d~   88 (221)
                      +++|.+|||||||+++++.... .......+++...........+..+.+|||||......        .....+..+|+
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~   79 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRRD-AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADV   79 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCcE-EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence            5899999999999999876542 12233344444444333343457899999999876443        22345778999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +++|+|+.+..+.... .+...+..  .+.|+++|+||+|+.+....   .......+. .++++|+++|.|+.+++++|
T Consensus        80 ii~v~d~~~~~~~~~~-~~~~~~~~--~~~piiiv~nK~D~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l  153 (157)
T cd01894          80 ILFVVDGREGLTPADE-EIAKYLRK--SKKPVILVVNKVDNIKEEDE---AAEFYSLGFGEPIPISAEHGRGIGDLLDAI  153 (157)
T ss_pred             EEEEEeccccCCccHH-HHHHHHHh--cCCCEEEEEECcccCChHHH---HHHHHhcCCCCeEEEecccCCCHHHHHHHH
Confidence            9999999876544332 22222322  26999999999998764332   222223444 68999999999999999999


Q ss_pred             HHH
Q 027607          168 ARK  170 (221)
Q Consensus       168 ~~~  170 (221)
                      .+.
T Consensus       154 ~~~  156 (157)
T cd01894         154 LEL  156 (157)
T ss_pred             Hhh
Confidence            875

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.87  E-value=4.1e-21  Score=142.23  Aligned_cols=111  Identities=16%  Similarity=0.149  Sum_probs=75.8

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----H
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----K  137 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~  137 (221)
                      ..+.+|||||++.+...+...+..+|++++|+|++++.........+..+.. ....|+++|+||+|+.+.....    +
T Consensus        83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~~~iiivvNK~Dl~~~~~~~~~~~~  161 (203)
T cd01888          83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGLKHIIIVQNKIDLVKEEQALENYEQ  161 (203)
T ss_pred             cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCCCcEEEEEEchhccCHHHHHHHHHH
Confidence            6789999999988776666677889999999999874221111222222222 2245799999999986532211    1


Q ss_pred             HHHHHhh---cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          138 QVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       138 ~~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ...+...   .+.+++++|+++|.|+++++++|.+.+..
T Consensus       162 i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~  200 (203)
T cd01888         162 IKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence            1122222   25679999999999999999999986544

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.86  E-value=3.5e-21  Score=141.04  Aligned_cols=154  Identities=18%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccC--------------CcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      +|+|+|.+|||||||+++++..........              ..+.+.......+......+.+|||||...+...+.
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~   80 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI   80 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence            589999999999999999877655432211              112222222223333457899999999888877778


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHh-------------
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHR-------------  143 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~-------------  143 (221)
                      .++..+|++++|+|+++....... .++.....  .+.|+++|+||+|+.......    .......             
T Consensus        81 ~~~~~~d~~i~v~d~~~~~~~~~~-~~~~~~~~--~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (189)
T cd00881          81 RGLSVSDGAILVVDANEGVQPQTR-EHLRIARE--GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTR  157 (189)
T ss_pred             HHHHhcCEEEEEEECCCCCcHHHH-HHHHHHHH--CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcc
Confidence            888999999999999876543322 23333332  489999999999987522111    1111221             


Q ss_pred             -hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          144 -KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       144 -~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                       ....+++++|+++|.|+++++.+|.+.+
T Consensus       158 ~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         158 NGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence             2357799999999999999999999875

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01889 SelB_euk SelB subfamily

Probab=99.86  E-value=4e-21  Score=141.31  Aligned_cols=157  Identities=15%  Similarity=0.088  Sum_probs=98.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCc----cCCcc-c----CCcceeeeeeEEE----------ecCcEEEEEEEecCCccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGE----FEKKY-E----PTIGVEVHPLDFF----------TNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~----~~~~~-~----~~~~~~~~~~~~~----------~~~~~~~i~~~D~~g~~~   74 (221)
                      ++|+++|++|+|||||+++|+...    +.... .    .+.+.........          .......+.+|||||+..
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~   80 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS   80 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence            589999999999999999987621    11100 1    1222222222221          112367899999999865


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHH-------h
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFH-------R  143 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~-------~  143 (221)
                      +..........+|++++|+|+++.........+.  +... .+.|+++|+||+|+......    .+..+..       .
T Consensus        81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~-~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~  157 (192)
T cd01889          81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI-LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTR  157 (192)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH-cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4332223345679999999998754333322222  1121 26799999999998643221    1111111       1


Q ss_pred             hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          144 KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ..+++++++|+++|.|+.+++.+|...+..
T Consensus       158 ~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~  187 (192)
T cd01889         158 FKNSPIIPVSAKPGGGEAELGKDLNNLIVL  187 (192)
T ss_pred             cCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence            245789999999999999999999887643

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=3.3e-21  Score=159.37  Aligned_cols=159  Identities=19%  Similarity=0.238  Sum_probs=110.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------ccccc-
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLR-   79 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~-   79 (221)
                      ...++|+++|.+|||||||+|+|+.... ....+..+++.......+...+..+.+|||||..+          +..+. 
T Consensus       209 ~~~~kI~iiG~~nvGKSSLin~l~~~~~-~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~  287 (472)
T PRK03003        209 GGPRRVALVGKPNVGKSSLLNKLAGEER-SVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRT  287 (472)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHH
Confidence            3569999999999999999999886653 23345566665554433333445678999999632          11111 


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHH-HHHhhcCCeEEEecc
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQV-TFHRKKNLQYYEISA  154 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~-~~~~~~~~~~~~~s~  154 (221)
                      ..+++.+|++++|+|+++..+++... ++..+..  .+.|+++|+||+|+.+.....    +.. .+......+++++||
T Consensus       288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~--~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SA  364 (472)
T PRK03003        288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE--AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISA  364 (472)
T ss_pred             HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEEC
Confidence            23467899999999999988877654 3333333  479999999999986432111    111 122223467899999


Q ss_pred             cCCCChHHHHHHHHHHHhC
Q 027607          155 KSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~  173 (221)
                      ++|.|++++|..+.+.+..
T Consensus       365 k~g~gv~~lf~~i~~~~~~  383 (472)
T PRK03003        365 KTGRAVDKLVPALETALES  383 (472)
T ss_pred             CCCCCHHHHHHHHHHHHHH
Confidence            9999999999999987644

>cd01895 EngA2 EngA2 subfamily

Probab=99.86  E-value=2.1e-20  Score=134.93  Aligned_cols=154  Identities=19%  Similarity=0.207  Sum_probs=100.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------ccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDG   81 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~~~   81 (221)
                      .++|+++|.+|+|||||+++++...... .....+++.......+...+..+.+|||||.......           ...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEERVI-VSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcccee-ccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            5899999999999999999987654321 1222333333332222223456889999996543111           112


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHH-HHHhhc----CCeEEEecc
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV-TFHRKK----NLQYYEISA  154 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~-~~~~~~----~~~~~~~s~  154 (221)
                      .+..+|++++|+|++++.+..... +...+..  .+.|+++++||+|+.+..  ...... ......    ..+++++|+
T Consensus        81 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  157 (174)
T cd01895          81 AIERADVVLLVIDATEGITEQDLR-IAGLILE--EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISA  157 (174)
T ss_pred             HHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh--cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEec
Confidence            356899999999999887655432 2222222  378999999999986542  222211 122222    367999999


Q ss_pred             cCCCChHHHHHHHHHH
Q 027607          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~  170 (221)
                      +++.|+.++++++.+.
T Consensus       158 ~~~~~i~~~~~~l~~~  173 (174)
T cd01895         158 LTGQGVDKLFDAIDEV  173 (174)
T ss_pred             cCCCCHHHHHHHHHHh
Confidence            9999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.86  E-value=1.6e-20  Score=154.31  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=110.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-----------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------   79 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~-----------   79 (221)
                      .+.++|+++|.+|+|||||+|+++.... ....+..+++.......+...+..+.+|||||........           
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGEER-VIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCe-eecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            4568999999999999999999876543 2234456666666555554445589999999976544322           


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-CccccHHHHHHH-----hhcCCeEEEec
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQVTFH-----RKKNLQYYEIS  153 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~~~~~-----~~~~~~~~~~s  153 (221)
                      ..+++.+|++++|+|++++.+.+... +...+..  .+.|+++|+||+|+. +.....+.....     ....++++++|
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~S  325 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE--AGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFIS  325 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH--cCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEe
Confidence            23578899999999999887665543 2233322  378999999999987 221111211111     11357899999


Q ss_pred             ccCCCChHHHHHHHHHHHh
Q 027607          154 AKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~  172 (221)
                      |++|.|+.++|.++.+.+.
T Consensus       326 A~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       326 ALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             CCCCCCHHHHHHHHHHHHH
Confidence            9999999999999988654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd04163 Era Era subfamily

Probab=99.86  E-value=2.4e-20  Score=133.60  Aligned_cols=155  Identities=15%  Similarity=0.111  Sum_probs=102.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--------cccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--------LRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--------~~~~~~   83 (221)
                      ...+|+++|++|||||||+++++..... ........+..............+.+|||||......        .....+
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~   80 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVGQKIS-IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL   80 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCceE-eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence            3589999999999999999997755432 2222223333333333444457899999999654322        223347


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHH-HHHhhc-CCeEEEecccCCCCh
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKK-NLQYYEISAKSNYNF  160 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~-~~~~~~-~~~~~~~s~~~~~gv  160 (221)
                      ..+|++++|+|+++.... ....+...+...  +.|+++|+||+|+.. .....+.. ...... ..+++.+|++++.|+
T Consensus        81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~  157 (168)
T cd04163          81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS--KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENV  157 (168)
T ss_pred             HhCCEEEEEEECCCccCc-hHHHHHHHHHHh--CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCCh
Confidence            789999999999987221 122223333332  689999999999873 32223322 222333 367899999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      ++++.+|.+.
T Consensus       158 ~~l~~~l~~~  167 (168)
T cd04163         158 DELLEEIVKY  167 (168)
T ss_pred             HHHHHHHHhh
Confidence            9999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.86  E-value=1.4e-20  Score=138.84  Aligned_cols=158  Identities=15%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc----------ccccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE----------KFGGL   78 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~----------~~~~~   78 (221)
                      .....++|+++|.+|||||||+++++.+.+...+.++.+.+........   ...+.+|||||..          .+...
T Consensus        20 ~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~l~l~DtpG~~~~~~~~~~~~~~~~~   96 (196)
T PRK00454         20 PPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---NDKLRLVDLPGYGYAKVSKEEKEKWQKL   96 (196)
T ss_pred             CCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---CCeEEEeCCCCCCCcCCCchHHHHHHHH
Confidence            3457799999999999999999998877666667777776655443332   2579999999943          22223


Q ss_pred             ccccccc---ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHHHHhhcCCeEEE
Q 027607           79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYE  151 (221)
Q Consensus        79 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~  151 (221)
                      ...++..   .+++++|+|++.+...... .+...+..  .+.|+++++||+|+........    ...........+++
T Consensus        97 ~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~  173 (196)
T PRK00454         97 IEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLKE--YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVIL  173 (196)
T ss_pred             HHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHHH--cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEE
Confidence            3334443   4678888888765433221 11222222  3789999999999864322221    22222333678999


Q ss_pred             ecccCCCChHHHHHHHHHHHh
Q 027607          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +|+++|.|++++++.|...+.
T Consensus       174 ~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        174 FSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEcCCCCCHHHHHHHHHHHhc
Confidence            999999999999999987654

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=5.6e-22  Score=136.56  Aligned_cols=160  Identities=24%  Similarity=0.424  Sum_probs=126.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc--------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~   81 (221)
                      ....+.|+++|+.++|||||+.+ +...+        .....++.|.....+.+    ....+.+||..|++..+++|..
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~-~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v----~~~~l~fwdlgGQe~lrSlw~~   88 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEA-LKTDFSKAYGGLNPSKITPTVGLNIGTIEV----CNAPLSFWDLGGQESLRSLWKK   88 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHH-HHHHHHhhhcCCCHHHeecccceeecceee----ccceeEEEEcCChHHHHHHHHH
Confidence            45678999999999999999987 33222        23444555544444433    4568999999999999999999


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH------hhcCCeEEEec
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKKNLQYYEIS  153 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~~~~~s  153 (221)
                      ||..++++++++|+++++.|+.....++.+...  ..+.|+++.+||.|+.+.....+.....      .+....+.++|
T Consensus        89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~~pvS  168 (197)
T KOG0076|consen   89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPFQPVS  168 (197)
T ss_pred             HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhHHHHHHHhhhhhhcCCccCccccch
Confidence            999999999999999999998877766665443  3689999999999998866555543222      23346789999


Q ss_pred             ccCCCChHHHHHHHHHHHhCC
Q 027607          154 AKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      +++|.|+++..+|+...+..+
T Consensus       169 al~gegv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  169 ALTGEGVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhhcccHHHHHHHHHHHHhhc
Confidence            999999999999999998877

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.86  E-value=1.6e-20  Score=149.09  Aligned_cols=156  Identities=17%  Similarity=0.184  Sum_probs=120.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc--------c
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG--------Y   82 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~--------~   82 (221)
                      ..-++++++|.||||||||+|+ +.+.....+...+|+|++..+..++-+++.+.+.||+|..+.......        .
T Consensus       215 r~G~kvvIiG~PNvGKSSLLNa-L~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~  293 (454)
T COG0486         215 REGLKVVIIGRPNVGKSSLLNA-LLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKA  293 (454)
T ss_pred             hcCceEEEECCCCCcHHHHHHH-HhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence            4568999999999999999999 556666788999999999999999999999999999997655444332        3


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +..+|.+++|+|++.+.+-.+... +.   ....+.|+++|.||.|+.........   ....+..++.+|+++|.|++.
T Consensus       294 i~~ADlvL~v~D~~~~~~~~d~~~-~~---~~~~~~~~i~v~NK~DL~~~~~~~~~---~~~~~~~~i~iSa~t~~Gl~~  366 (454)
T COG0486         294 IEEADLVLFVLDASQPLDKEDLAL-IE---LLPKKKPIIVVLNKADLVSKIELESE---KLANGDAIISISAKTGEGLDA  366 (454)
T ss_pred             HHhCCEEEEEEeCCCCCchhhHHH-HH---hcccCCCEEEEEechhcccccccchh---hccCCCceEEEEecCccCHHH
Confidence            778999999999998633222211 11   22347999999999999765443222   223344789999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027607          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +.+.|.+.+...
T Consensus       367 L~~~i~~~~~~~  378 (454)
T COG0486         367 LREAIKQLFGKG  378 (454)
T ss_pred             HHHHHHHHHhhc
Confidence            999999877655

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.86  E-value=1e-20  Score=154.49  Aligned_cols=160  Identities=17%  Similarity=0.129  Sum_probs=112.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----cccc---ccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLR---DGYYIHG   86 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----~~~~---~~~~~~~   86 (221)
                      ..|+|+|.+|||||||+|+|.....  .....+++|..+....+......|.+||+||....    ..+.   ...+..+
T Consensus       160 adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLrhiera  237 (500)
T PRK12296        160 ADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLRHIERC  237 (500)
T ss_pred             ceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHHHHHhc
Confidence            4799999999999999999775532  34555667777766666656678999999996321    1111   2235678


Q ss_pred             cEEEEEEECCCh----hhhccHHHHHHHHHhhc------------CCCCEEEEEeCCCcCCccccHH-HHHHHhhcCCeE
Q 027607           87 QCAIIMFDVTAR----LTYKNVPTWHRDLCRVC------------ENIPIVLCGNKVDVKNRQVKAK-QVTFHRKKNLQY  149 (221)
Q Consensus        87 d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~------------~~~p~ivv~nK~D~~~~~~~~~-~~~~~~~~~~~~  149 (221)
                      +++++|+|+++.    ..+..+..+...+..+.            ..+|+++|+||+|+.+.....+ ........++++
T Consensus       238 dvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~V  317 (500)
T PRK12296        238 AVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPV  317 (500)
T ss_pred             CEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeE
Confidence            999999999853    24444555554444332            3689999999999865332222 222333457899


Q ss_pred             EEecccCCCChHHHHHHHHHHHhCCC
Q 027607          150 YEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      +++|++++.|+++++.+|.+.+....
T Consensus       318 f~ISA~tgeGLdEL~~~L~ell~~~r  343 (500)
T PRK12296        318 FEVSAASREGLRELSFALAELVEEAR  343 (500)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999876543

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=9.7e-21  Score=134.75  Aligned_cols=138  Identities=16%  Similarity=0.084  Sum_probs=94.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----ccccccccEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DGYYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----~~~~~~~d~~i   90 (221)
                      +|+++|.+|+|||||+|++. +.+.. ...+.       ...+...    .+|||||.......+    ...+..+|+++
T Consensus         3 ~i~~iG~~~~GKstl~~~l~-~~~~~-~~~~~-------~v~~~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il   69 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQ-GNYTL-ARKTQ-------AVEFNDK----GDIDTPGEYFSHPRWYHALITTLQDVDMLI   69 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHc-CCCcc-Cccce-------EEEECCC----CcccCCccccCCHHHHHHHHHHHhcCCEEE
Confidence            79999999999999999954 44321 11121       1222222    269999973222111    22367899999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC--eEEEecccCCCChHHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +|+|+++..++..  .|+..+   ..+.|+++++||+|+.+.. ......+....++  +++++|+++|.|++++|++++
T Consensus        70 ~v~d~~~~~s~~~--~~~~~~---~~~~~ii~v~nK~Dl~~~~-~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~  143 (158)
T PRK15467         70 YVHGANDPESRLP--AGLLDI---GVSKRQIAVISKTDMPDAD-VAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLA  143 (158)
T ss_pred             EEEeCCCcccccC--HHHHhc---cCCCCeEEEEEccccCccc-HHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHH
Confidence            9999998876643  343332   2367999999999986532 2333455555554  899999999999999999998


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       144 ~~~  146 (158)
T PRK15467        144 SLT  146 (158)
T ss_pred             Hhc
Confidence            865

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.85  E-value=1.2e-20  Score=137.19  Aligned_cols=148  Identities=15%  Similarity=0.121  Sum_probs=98.2

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------ccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGG   77 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~   77 (221)
                      .+....++|+|+|++|+|||||+|+++...+...+.++.+.+.....+..+.   .+.+|||||...          +..
T Consensus        13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~   89 (179)
T TIGR03598        13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQK   89 (179)
T ss_pred             CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHH
Confidence            3446789999999999999999999887765555666777666544444332   689999999532          222


Q ss_pred             ccccccc---cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc--CCe
Q 027607           78 LRDGYYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK--NLQ  148 (221)
Q Consensus        78 ~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~--~~~  148 (221)
                      ....+++   .++++++|+|++.+.+..... ++..+..  .+.|+++|+||+|+......    .+........  ...
T Consensus        90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~--~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~  166 (179)
T TIGR03598        90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE--RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPS  166 (179)
T ss_pred             HHHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCc
Confidence            2233444   357999999998764444332 2233322  27899999999998643211    1222333333  247


Q ss_pred             EEEecccCCCChH
Q 027607          149 YYEISAKSNYNFE  161 (221)
Q Consensus       149 ~~~~s~~~~~gv~  161 (221)
                      ++++|+++|.|++
T Consensus       167 v~~~Sa~~g~gi~  179 (179)
T TIGR03598       167 VQLFSSLKKTGID  179 (179)
T ss_pred             eEEEECCCCCCCC
Confidence            9999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.85  E-value=8.1e-20  Score=157.35  Aligned_cols=153  Identities=14%  Similarity=0.141  Sum_probs=117.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----------cc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----------~~   81 (221)
                      ++++|+++|++|||||||+|++.+...  .+.+..|+|...+...+..++..+.+|||||...+....          ..
T Consensus         2 ~~~~IaLvG~pNvGKSTLfN~Ltg~~~--~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~   79 (772)
T PRK09554          2 KKLTIGLIGNPNSGKTTLFNQLTGARQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (772)
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCC--ccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence            468999999999999999999765433  456778999988888888788899999999987654321          12


Q ss_pred             cc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCCeEEEecccCCC
Q 027607           82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++  ..+|++++|+|+++.+...   .+...+...  +.|+++++||+|+.+ +.......++....+++++++|+.+|.
T Consensus        80 ~l~~~~aD~vI~VvDat~ler~l---~l~~ql~e~--giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~  154 (772)
T PRK09554         80 YILSGDADLLINVVDASNLERNL---YLTLQLLEL--GIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGR  154 (772)
T ss_pred             HHhccCCCEEEEEecCCcchhhH---HHHHHHHHc--CCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCC
Confidence            32  3789999999998865322   233333332  799999999999864 334444556677789999999999999


Q ss_pred             ChHHHHHHHHHHH
Q 027607          159 NFEKPFLYLARKL  171 (221)
Q Consensus       159 gv~~~~~~l~~~l  171 (221)
                      |++++.+.+.+..
T Consensus       155 GIdeL~~~I~~~~  167 (772)
T PRK09554        155 GIEALKLAIDRHQ  167 (772)
T ss_pred             CHHHHHHHHHHhh
Confidence            9999999888754

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.85  E-value=1.6e-20  Score=127.03  Aligned_cols=167  Identities=23%  Similarity=0.369  Sum_probs=143.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .+.-.+||+++|++..|||||+-.+..+.+...+..+.|.....+++.+.+..+.+.+||..|++++..+..-....+-+
T Consensus        16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsva   95 (205)
T KOG1673|consen   16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVA   95 (205)
T ss_pred             ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEE
Confidence            34457999999999999999999999999988888999999999999999999999999999999999888888889999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC---c----cccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN---R----QVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~---~----~~~~~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      ++++||.+.+..+..+..|++..+..+...--++|++|.|.--   +    .....+...+.-.+...+.||+....+++
T Consensus        96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sINv~  175 (205)
T KOG1673|consen   96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSINVQ  175 (205)
T ss_pred             EEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccccHH
Confidence            9999999999999999999998887654444467899999521   1    22333456667778999999999999999


Q ss_pred             HHHHHHHHHHhCCC
Q 027607          162 KPFLYLARKLAGDP  175 (221)
Q Consensus       162 ~~~~~l~~~l~~~~  175 (221)
                      ++|..+...+..-|
T Consensus       176 KIFK~vlAklFnL~  189 (205)
T KOG1673|consen  176 KIFKIVLAKLFNLP  189 (205)
T ss_pred             HHHHHHHHHHhCCc
Confidence            99999888876654

>PRK11058 GTPase HflX; Provisional

Probab=99.85  E-value=2.3e-20  Score=151.39  Aligned_cols=156  Identities=17%  Similarity=0.144  Sum_probs=104.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCcccc--ccccc------cccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKF--GGLRD------GYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~--~~~~~------~~~~   84 (221)
                      .+|+++|.+|||||||+|+|+.....  .....+.|.+.....+.. +...+.+|||+|....  ...+.      ..+.
T Consensus       198 p~ValVG~~NaGKSSLlN~Lt~~~~~--v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~  275 (426)
T PRK11058        198 PTVSLVGYTNAGKSTLFNRITEARVY--AADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETR  275 (426)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCcee--eccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence            68999999999999999998765432  223333344433322221 2236789999997331  11222      2357


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCe-EEEecccCCCChHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~  162 (221)
                      .+|++++|+|++++.++..+..|...+.... .+.|+++|+||+|+......  .... ...+.+ ++.+||++|.|+++
T Consensus       276 ~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~--~~~~-~~~~~~~~v~ISAktG~GIde  352 (426)
T PRK11058        276 QATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP--RIDR-DEENKPIRVWLSAQTGAGIPL  352 (426)
T ss_pred             cCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH--HHHH-HhcCCCceEEEeCCCCCCHHH
Confidence            8999999999999887777655544443332 37899999999998643111  1111 123444 48899999999999


Q ss_pred             HHHHHHHHHhCC
Q 027607          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      ++++|.+.+...
T Consensus       353 L~e~I~~~l~~~  364 (426)
T PRK11058        353 LFQALTERLSGE  364 (426)
T ss_pred             HHHHHHHHhhhc
Confidence            999999987543

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.85  E-value=1.1e-20  Score=125.84  Aligned_cols=157  Identities=20%  Similarity=0.316  Sum_probs=124.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+++||+++|-.++|||||++. +.+.......++.|+........   +.+++.+||++|+...+.+|..||.+.|++
T Consensus        14 t~rEirilllGldnAGKTT~LKq-L~sED~~hltpT~GFn~k~v~~~---g~f~LnvwDiGGqr~IRpyWsNYyenvd~l   89 (185)
T KOG0074|consen   14 TRREIRILLLGLDNAGKTTFLKQ-LKSEDPRHLTPTNGFNTKKVEYD---GTFHLNVWDIGGQRGIRPYWSNYYENVDGL   89 (185)
T ss_pred             CcceEEEEEEecCCCcchhHHHH-HccCChhhccccCCcceEEEeec---CcEEEEEEecCCccccchhhhhhhhccceE
Confidence            47899999999999999999998 66666677788888777666553   568999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      |+|+|.++...|+.+..-+-++...  ....|+.+..||.|+.-.-..++..     .......+.+.+||+.++.|+..
T Consensus        90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eeia~klnl~~lrdRswhIq~csals~eg~~d  169 (185)
T KOG0074|consen   90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEIALKLNLAGLRDRSWHIQECSALSLEGSTD  169 (185)
T ss_pred             EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHHHHhcchhhhhhceEEeeeCccccccCccC
Confidence            9999999998888766555554433  2578999999999975433333222     12233456788999999999998


Q ss_pred             HHHHHHHH
Q 027607          163 PFLYLARK  170 (221)
Q Consensus       163 ~~~~l~~~  170 (221)
                      -..|+.+.
T Consensus       170 g~~wv~sn  177 (185)
T KOG0074|consen  170 GSDWVQSN  177 (185)
T ss_pred             cchhhhcC
Confidence            88887664

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.85  E-value=6.7e-20  Score=153.71  Aligned_cols=155  Identities=14%  Similarity=0.132  Sum_probs=106.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+..+|+++|+.++|||||+++|....+.....+.+..+.....+...+. ..+.+|||||++.+..++...+..+|++
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDia  162 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIV  162 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEE
Confidence            346689999999999999999998876654433322222222223333222 2789999999999998888889999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhh-------c--CCeEEEecccCCCCh
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK-------K--NLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-------~--~~~~~~~s~~~~~gv  160 (221)
                      ++|+|+++...-+....+ ....  ..+.|+++++||+|+.+... .+.......       +  ..+++++||++|.|+
T Consensus       163 ILVVda~dgv~~qT~e~i-~~~~--~~~vPiIVviNKiDl~~~~~-e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI  238 (587)
T TIGR00487       163 VLVVAADDGVMPQTIEAI-SHAK--AANVPIIVAINKIDKPEANP-DRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGI  238 (587)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH--HcCCCEEEEEECcccccCCH-HHHHHHHHHhhhhHHhcCCCceEEEEECCCCCCh
Confidence            999999875322222211 1111  23789999999999864321 111111111       1  257999999999999


Q ss_pred             HHHHHHHHH
Q 027607          161 EKPFLYLAR  169 (221)
Q Consensus       161 ~~~~~~l~~  169 (221)
                      ++++++|..
T Consensus       239 ~eLl~~I~~  247 (587)
T TIGR00487       239 DELLDMILL  247 (587)
T ss_pred             HHHHHhhhh
Confidence            999999864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.84  E-value=8.9e-21  Score=138.95  Aligned_cols=157  Identities=18%  Similarity=0.163  Sum_probs=106.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEec--CcEEEEEEEecCCcc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTN--CGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~--~~~~~i~~~D~~g~~   73 (221)
                      +-++|+++|+.++|||||+.+|+......                ......+.+.......+.  .....+.++|+||+.
T Consensus         2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~   81 (188)
T PF00009_consen    2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE   81 (188)
T ss_dssp             TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred             CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence            45899999999999999999988543211                011112333333333443  567899999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHHhh-----
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK-----  144 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~-----  144 (221)
                      .+.......+..+|++++|+|+.+....+. ...+..+..  .+.|+++|+||+|+..........    .+...     
T Consensus        82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~--~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~  158 (188)
T PF00009_consen   82 DFIKEMIRGLRQADIAILVVDANDGIQPQT-EEHLKILRE--LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENG  158 (188)
T ss_dssp             HHHHHHHHHHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH--TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             ceeecccceecccccceeeeeccccccccc-ccccccccc--cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCc
Confidence            887777777889999999999987643322 222233323  388999999999987432222111    12111     


Q ss_pred             -cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          145 -KNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       145 -~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                       ..++++++|+++|.|+.++++.|.+.+
T Consensus       159 ~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  159 EEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             TSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             cccceEEEEecCCCCCHHHHHHHHHHhC
Confidence             136799999999999999999998854

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.84  E-value=3.2e-20  Score=152.72  Aligned_cols=148  Identities=22%  Similarity=0.186  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~~~   85 (221)
                      ++|+++|.+|||||||+|+|+.... .......+++...........+..+.+|||||...        +......++..
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~~-~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~   80 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKRD-AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEE   80 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence            5899999999999999999776543 23344555555544443333447899999999876        22223445789


Q ss_pred             ccEEEEEEECCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHH
Q 027607           86 GQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~  162 (221)
                      +|++++|+|+++..+...  +..|+.   ..  +.|+++|+||+|..+..  ..... ....++ .++++|+.+|.|+.+
T Consensus        81 ad~il~vvd~~~~~~~~~~~~~~~l~---~~--~~piilv~NK~D~~~~~--~~~~~-~~~lg~~~~~~iSa~~g~gv~~  152 (435)
T PRK00093         81 ADVILFVVDGRAGLTPADEEIAKILR---KS--NKPVILVVNKVDGPDEE--ADAYE-FYSLGLGEPYPISAEHGRGIGD  152 (435)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHH---Hc--CCcEEEEEECccCccch--hhHHH-HHhcCCCCCEEEEeeCCCCHHH
Confidence            999999999987543322  223332   22  78999999999975421  11222 234455 389999999999999


Q ss_pred             HHHHHHHH
Q 027607          163 PFLYLARK  170 (221)
Q Consensus       163 ~~~~l~~~  170 (221)
                      +++++...
T Consensus       153 l~~~I~~~  160 (435)
T PRK00093        153 LLDAILEE  160 (435)
T ss_pred             HHHHHHhh
Confidence            99999873

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.84  E-value=4.1e-20  Score=151.86  Aligned_cols=152  Identities=20%  Similarity=0.176  Sum_probs=108.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--------ccccccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--------~~~~~~~~~~~~~   86 (221)
                      +|+++|.+|||||||+|+|+.+. ...+....|++...........+..+.+|||||..        .+......++..+
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~a   79 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEA   79 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhC
Confidence            58999999999999999977655 33455667777666655555556689999999963        2333345567899


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~  165 (221)
                      |++++|+|+.+....... .+...+..  .++|+++|+||+|+......  ... ....++ .++++||.+|.|+.++++
T Consensus        80 d~vl~vvD~~~~~~~~d~-~i~~~l~~--~~~piilVvNK~D~~~~~~~--~~~-~~~lg~~~~~~vSa~~g~gv~~ll~  153 (429)
T TIGR03594        80 DVILFVVDGREGLTPEDE-EIAKWLRK--SGKPVILVANKIDGKKEDAV--AAE-FYSLGFGEPIPISAEHGRGIGDLLD  153 (429)
T ss_pred             CEEEEEEeCCCCCCHHHH-HHHHHHHH--hCCCEEEEEECccCCccccc--HHH-HHhcCCCCeEEEeCCcCCChHHHHH
Confidence            999999999875433321 12222332  27899999999998653321  122 234455 699999999999999999


Q ss_pred             HHHHHHhC
Q 027607          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      ++.+.+..
T Consensus       154 ~i~~~l~~  161 (429)
T TIGR03594       154 AILELLPE  161 (429)
T ss_pred             HHHHhcCc
Confidence            99987644

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.83  E-value=2.1e-20  Score=147.97  Aligned_cols=153  Identities=18%  Similarity=0.079  Sum_probs=114.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc---------cccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~---------~~~~~~~~   84 (221)
                      ..|+++|.||||||||+|+|+ +.-...+..++|+|++.+.......+..|.++||+|.+...         ......+.
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~-g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~   82 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLT-GRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIE   82 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHh-CCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHH
Confidence            679999999999999999955 55567888999999999988888788889999999976432         12233477


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      .+|+++||+|.....+-.+- .....++  ..++|+++|+||+|...  ......++....--.++.+||..|.|+.++.
T Consensus        83 eADvilfvVD~~~Git~~D~-~ia~~Lr--~~~kpviLvvNK~D~~~--~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLl  157 (444)
T COG1160          83 EADVILFVVDGREGITPADE-EIAKILR--RSKKPVILVVNKIDNLK--AEELAYEFYSLGFGEPVPISAEHGRGIGDLL  157 (444)
T ss_pred             hCCEEEEEEeCCCCCCHHHH-HHHHHHH--hcCCCEEEEEEcccCch--hhhhHHHHHhcCCCCceEeehhhccCHHHHH
Confidence            89999999999875443221 1122222  23799999999999752  2222334444444568999999999999999


Q ss_pred             HHHHHHHh
Q 027607          165 LYLARKLA  172 (221)
Q Consensus       165 ~~l~~~l~  172 (221)
                      +++...+.
T Consensus       158 d~v~~~l~  165 (444)
T COG1160         158 DAVLELLP  165 (444)
T ss_pred             HHHHhhcC
Confidence            99999763

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.83  E-value=2e-19  Score=148.02  Aligned_cols=158  Identities=16%  Similarity=0.142  Sum_probs=110.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------c
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------R   79 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~   79 (221)
                      ...++|+++|.+|+|||||+|+++.... ....+..|++.......+...+..+.+|||||.......           .
T Consensus       171 ~~~~~v~ivG~~n~GKStlin~ll~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~  249 (435)
T PRK00093        171 DEPIKIAIIGRPNVGKSSLINALLGEER-VIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT  249 (435)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence            3579999999999999999999775432 234556677777766655555677899999996432221           1


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecc
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISA  154 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~  154 (221)
                      ..++..+|++++|+|++++.+.+... +...+..  .++|+++|+||+|+.+.....+...     +.....++++++||
T Consensus       250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~--~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA  326 (435)
T PRK00093        250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE--AGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISA  326 (435)
T ss_pred             HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH--cCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeC
Confidence            23567899999999999886665543 2222322  3789999999999874322222111     11223578999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 027607          155 KSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~  172 (221)
                      ++|.|+.+++..+.+...
T Consensus       327 ~~~~gv~~l~~~i~~~~~  344 (435)
T PRK00093        327 LTGQGVDKLLEAIDEAYE  344 (435)
T ss_pred             CCCCCHHHHHHHHHHHHH
Confidence            999999999999887553

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.83  E-value=1.3e-19  Score=134.13  Aligned_cols=116  Identities=17%  Similarity=0.257  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc-cEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG-QCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~-d~~i~v~   93 (221)
                      +|+++|++|||||||+++|..+.+...+.++. ................+.+||+||+..++..+..+++.+ +++|+|+
T Consensus         2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~~-~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~Vv   80 (203)
T cd04105           2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSIE-PNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVV   80 (203)
T ss_pred             eEEEEcCCCCCHHHHHHHHhcCCCCCccCcEe-ecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEE
Confidence            68999999999999999988877655443331 111111111113457899999999999988888889998 9999999


Q ss_pred             ECCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCC
Q 027607           94 DVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKN  131 (221)
Q Consensus        94 d~~~~-~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~  131 (221)
                      |+.+. .++.....|+..+...    ....|+++++||+|+..
T Consensus        81 D~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          81 DSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             ECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            99987 5666666665544321    25899999999999754

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.83  E-value=8.7e-20  Score=153.86  Aligned_cols=156  Identities=14%  Similarity=0.165  Sum_probs=112.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCc--cC-----Ccc------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGE--FE-----KKY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~--~~-----~~~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~   74 (221)
                      --+|+++|+.++|||||+.+|+...  ..     ..+      ....|.+.......+     ++..+.+.+|||||+.+
T Consensus         7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d   86 (600)
T PRK05433          7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD   86 (600)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence            3589999999999999999988632  11     111      123355554433333     34468899999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEE
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYE  151 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~  151 (221)
                      +...+..++..+|++++|+|+++....+....|.....   .+.|+++|+||+|+.+.........+....++   .++.
T Consensus        87 F~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~lpiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~  163 (600)
T PRK05433         87 FSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---NDLEIIPVLNKIDLPAADPERVKQEIEDVIGIDASDAVL  163 (600)
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCcccHHHHHHHHHHHhCCCcceEEE
Confidence            98888889999999999999998765555555543322   37899999999998654322212223333344   4899


Q ss_pred             ecccCCCChHHHHHHHHHHH
Q 027607          152 ISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l  171 (221)
                      +||++|.|+.+++++|.+.+
T Consensus       164 iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        164 VSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             EecCCCCCHHHHHHHHHHhC
Confidence            99999999999999998865

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.83  E-value=4.5e-19  Score=119.78  Aligned_cols=164  Identities=20%  Similarity=0.352  Sum_probs=128.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCC--cccCCcceeeeeeEEEec-CcEEEEEEEecCCcccc-cccccccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK--KYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-GGLRDGYYIHGQ   87 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~-~~~~~~~~~~~d   87 (221)
                      +..||+|+|..++|||+++.+++.+....  .+.+|+. +.+...+..+ +-.-.+.++||.|.... ..+..+|+.-+|
T Consensus         8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiE-DiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~aD   86 (198)
T KOG3883|consen    8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIE-DIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFAD   86 (198)
T ss_pred             cceEEEEECCccccHHHHHHHHHhccCCCCCccccchh-hheeEeeecCCChhheEEEeecccccCchhhhhHhHhccCc
Confidence            56899999999999999999988876643  3334443 2222222222 23457899999997766 667789999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC--ccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN--RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ++++||+..+++||+.+..+...+....  ..+|+++++||.|+.+  .....-+..|+.+..++.+++++.....+-+.
T Consensus        87 afVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep  166 (198)
T KOG3883|consen   87 AFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP  166 (198)
T ss_pred             eEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence            9999999999999998877777776654  4689999999999954  33444566899999999999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 027607          164 FLYLARKLAGDPN  176 (221)
Q Consensus       164 ~~~l~~~l~~~~~  176 (221)
                      |..++..+.+-..
T Consensus       167 f~~l~~rl~~pqs  179 (198)
T KOG3883|consen  167 FTYLASRLHQPQS  179 (198)
T ss_pred             HHHHHHhccCCcc
Confidence            9999998765443

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.83  E-value=1.1e-19  Score=154.77  Aligned_cols=157  Identities=19%  Similarity=0.219  Sum_probs=108.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCccee--eeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .+..+|+|+|+.++|||||+++|....+..........+  .+.......+....+.+|||||++.+..++..++..+|+
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDi  321 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDI  321 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCE
Confidence            466899999999999999999988765543222222111  222222333446889999999999999888889999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHH------Hhhc--CCeEEEecccCCCCh
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF------HRKK--NLQYYEISAKSNYNF  160 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~------~~~~--~~~~~~~s~~~~~gv  160 (221)
                      +++|+|+++....+....+ ..+.  ..+.|+++++||+|+.......-...+      ....  .++++++||++|.|+
T Consensus       322 aILVVDA~dGv~~QT~E~I-~~~k--~~~iPiIVViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GI  398 (742)
T CHL00189        322 AILIIAADDGVKPQTIEAI-NYIQ--AANVPIIVAINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNI  398 (742)
T ss_pred             EEEEEECcCCCChhhHHHH-HHHH--hcCceEEEEEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCH
Confidence            9999999875433322222 1222  237899999999998753321111111      1112  268999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      .+++.+|...
T Consensus       399 deLle~I~~l  408 (742)
T CHL00189        399 DKLLETILLL  408 (742)
T ss_pred             HHHHHhhhhh
Confidence            9999998774

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.82  E-value=2.1e-19  Score=155.11  Aligned_cols=155  Identities=25%  Similarity=0.221  Sum_probs=109.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--------ccccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--------FGGLRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--------~~~~~~~~~   83 (221)
                      ...+|+++|.+|||||||+|+|+.... ..+..++|++...........+..+.+|||||...        +......++
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~-~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~  352 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQAQIAV  352 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHHHHHH
Confidence            457899999999999999999875543 44566788888777666555567899999999653        122233457


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~  162 (221)
                      ..+|++++|+|+++...... ..|...+..  .+.|+++|+||+|+.....  ....+. ..+. ..+++||++|.|+.+
T Consensus       353 ~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~--~~~pvIlV~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~GI~e  426 (712)
T PRK09518        353 SLADAVVFVVDGQVGLTSTD-ERIVRMLRR--AGKPVVLAVNKIDDQASEY--DAAEFW-KLGLGEPYPISAMHGRGVGD  426 (712)
T ss_pred             HhCCEEEEEEECCCCCCHHH-HHHHHHHHh--cCCCEEEEEECcccccchh--hHHHHH-HcCCCCeEEEECCCCCCchH
Confidence            89999999999986432111 134444433  4899999999999864321  112221 2222 357899999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      ++.+|.+.+..
T Consensus       427 Ll~~i~~~l~~  437 (712)
T PRK09518        427 LLDEALDSLKV  437 (712)
T ss_pred             HHHHHHHhccc
Confidence            99999987744

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.82  E-value=3.6e-19  Score=152.80  Aligned_cols=155  Identities=14%  Similarity=0.149  Sum_probs=107.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+...|+|+|+.++|||||+++|..+.+....  ..|.+.......+...+..+.+|||||++.|..++...+..+|++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e--~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~~aDia  364 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGE--AGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQVTDIV  364 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccccc--cCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhhhCCEE
Confidence            456689999999999999999998766554322  223333332333333346799999999999999888888999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHH---HHhhc--CCeEEEecccCCCChH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVT---FHRKK--NLQYYEISAKSNYNFE  161 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~---~~~~~--~~~~~~~s~~~~~gv~  161 (221)
                      ++|+|+++...-+....| ....  ..+.|+++++||+|+.+....   .+...   +...+  .++++++|+++|.|++
T Consensus       365 ILVVdAddGv~~qT~e~i-~~a~--~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~  441 (787)
T PRK05306        365 VLVVAADDGVMPQTIEAI-NHAK--AAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGID  441 (787)
T ss_pred             EEEEECCCCCCHhHHHHH-HHHH--hcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCch
Confidence            999999875322222222 1111  237999999999999653211   11111   11122  2689999999999999


Q ss_pred             HHHHHHHH
Q 027607          162 KPFLYLAR  169 (221)
Q Consensus       162 ~~~~~l~~  169 (221)
                      +++++|..
T Consensus       442 eLle~I~~  449 (787)
T PRK05306        442 ELLEAILL  449 (787)
T ss_pred             HHHHhhhh
Confidence            99999875

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4.9e-20  Score=123.14  Aligned_cols=157  Identities=22%  Similarity=0.350  Sum_probs=123.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ++.+|.++|--|+||||++.++-.+.. ....|++|.....+.+    ++..+++||..|+...+..|+.|+.+.+++|+
T Consensus        17 ~e~rililgldGaGkttIlyrlqvgev-vttkPtigfnve~v~y----KNLk~~vwdLggqtSirPyWRcYy~dt~avIy   91 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVGEV-VTTKPTIGFNVETVPY----KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY   91 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccCcc-cccCCCCCcCcccccc----ccccceeeEccCcccccHHHHHHhcccceEEE
Confidence            789999999999999999998554443 4557788776666555    78899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |+|.+|..........+..+..  ...+..++++.||.|...+....+...     ......+.++.+||.+|.|++...
T Consensus        92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~  171 (182)
T KOG0072|consen   92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAM  171 (182)
T ss_pred             EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHHH
Confidence            9999998766554443333322  234677788999999887665555432     223345789999999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      +|+.+.+..
T Consensus       172 DWL~~~l~~  180 (182)
T KOG0072|consen  172 DWLQRPLKS  180 (182)
T ss_pred             HHHHHHHhc
Confidence            999997754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.82  E-value=3.2e-19  Score=150.35  Aligned_cols=145  Identities=14%  Similarity=0.115  Sum_probs=105.6

Q ss_pred             cCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc------ccccc--ccccEEEE
Q 027607           20 GDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL------RDGYY--IHGQCAII   91 (221)
Q Consensus        20 G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~------~~~~~--~~~d~~i~   91 (221)
                      |++|||||||+|++.+...  ...+..|++.+.....+..++..+.+|||||...+...      ...++  ..+|++++
T Consensus         1 G~pNvGKSSL~N~Ltg~~~--~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~   78 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGANQ--TVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVN   78 (591)
T ss_pred             CCCCCCHHHHHHHHhCCCC--eecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEE
Confidence            8999999999999876654  34556677776665555445567899999998776553      23333  36899999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+|+++.+.   ...+...+..  .+.|+++|+||+|+.++ ....+...+....+++++++|+++|.|++++++++.+.
T Consensus        79 VvDat~ler---~l~l~~ql~~--~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~  153 (591)
T TIGR00437        79 VVDASNLER---NLYLTLQLLE--LGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKA  153 (591)
T ss_pred             EecCCcchh---hHHHHHHHHh--cCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            999987432   1122222222  37999999999998543 23334456677788999999999999999999999886


Q ss_pred             H
Q 027607          171 L  171 (221)
Q Consensus       171 l  171 (221)
                      .
T Consensus       154 ~  154 (591)
T TIGR00437       154 I  154 (591)
T ss_pred             h
Confidence            4

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.81  E-value=4.9e-19  Score=149.08  Aligned_cols=152  Identities=18%  Similarity=0.101  Sum_probs=103.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC---ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      +.|+++|+.++|||||+++|...   .+.....  .|.+.......+...+..+.+||+||++.+...+...+.++|+++
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~--rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~~aD~aI   78 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKK--RGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGGGIDAAL   78 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhc--CCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence            47999999999999999997642   2222222  233333222222323378999999999988777777889999999


Q ss_pred             EEEECCCh---hhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCcccc----HHHHHHHhhc----CCeEEEecccCCC
Q 027607           91 IMFDVTAR---LTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISAKSNY  158 (221)
Q Consensus        91 ~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~~~~~  158 (221)
                      +|+|+++.   .+++.+    ..+..  .+.| +++|+||+|+.+....    .+...+....    +++++++|+++|.
T Consensus        79 LVVDa~~G~~~qT~ehl----~il~~--lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~  152 (581)
T TIGR00475        79 LVVDADEGVMTQTGEHL----AVLDL--LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQ  152 (581)
T ss_pred             EEEECCCCCcHHHHHHH----HHHHH--cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCC
Confidence            99999984   333222    22221  2667 9999999998654321    1222333222    5789999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027607          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 gv~~~~~~l~~~l~~  173 (221)
                      |+++++..|...+..
T Consensus       153 GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       153 GIGELKKELKNLLES  167 (581)
T ss_pred             CchhHHHHHHHHHHh
Confidence            999999998876543

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.81  E-value=3.9e-19  Score=145.54  Aligned_cols=155  Identities=20%  Similarity=0.164  Sum_probs=105.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|++++|||||+++|+....  ..                           ......|+|.+.....+..+
T Consensus         3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            45789999999999999999999884211  10                           01114567777777777777


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc------
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------  134 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------  134 (221)
                      +..+.+|||||++.+.......+..+|++++|+|+++..++.....+...+.......|+++++||+|+.+...      
T Consensus        83 ~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~  162 (425)
T PRK12317         83 KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEV  162 (425)
T ss_pred             CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHH
Confidence            88999999999987765545557889999999999874223222222222222223356899999999864211      


Q ss_pred             cHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607          135 KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       135 ~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~  164 (221)
                      ..+...+....+     ++++++|+++|.|+.+..
T Consensus       163 ~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~  197 (425)
T PRK12317        163 KEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS  197 (425)
T ss_pred             HHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence            112223333333     579999999999998643

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.81  E-value=2.6e-19  Score=154.51  Aligned_cols=158  Identities=16%  Similarity=0.216  Sum_probs=107.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----------cccc-c
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR-D   80 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----------~~~~-~   80 (221)
                      ..++|+++|.+|||||||+|+|+.... .......+++.......+...+..+.+|||||..+.          ..+. .
T Consensus       449 ~~~kI~ivG~~nvGKSSLin~l~~~~~-~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~  527 (712)
T PRK09518        449 GLRRVALVGRPNVGKSSLLNQLTHEER-AVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQ  527 (712)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCccc-cccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHH
Confidence            458999999999999999999886653 222345555555544333333446779999996421          1111 2


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH-HHh----hcCCeEEEeccc
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHR----KKNLQYYEISAK  155 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~----~~~~~~~~~s~~  155 (221)
                      ..++.+|++++|+|+++..+.+.... ...+..  .++|+++|+||+|+.+......... ...    ....+.+.+||+
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~i-~~~~~~--~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAk  604 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLKV-MSMAVD--AGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAK  604 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHHH-HHHHHH--cCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            23678999999999999877776543 333332  3799999999999865322221111 111    123467899999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027607          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~  173 (221)
                      +|.|+++++..+.+.+.+
T Consensus       605 tg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        605 TGWHTNRLAPAMQEALES  622 (712)
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999997654

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.81  E-value=1.1e-18  Score=131.03  Aligned_cols=180  Identities=16%  Similarity=0.173  Sum_probs=126.0

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----------
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------   77 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----------   77 (221)
                      ..+.+.++|+|+|.||+|||||.|.+++.. ....+....+|+......+..+...+.++||||.-.-..          
T Consensus        67 ~e~~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~  145 (379)
T KOG1423|consen   67 EEAQKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSV  145 (379)
T ss_pred             hhcceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHh
Confidence            456788999999999999999999966544 455667777888888888888889999999999422111          


Q ss_pred             --ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHH
Q 027607           78 --LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTF  141 (221)
Q Consensus        78 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~  141 (221)
                        -....+.++|++++++|+++....-.. ..+..+.. +.+.|-++|.||.|.....              ......++
T Consensus       146 lq~~~~a~q~AD~vvVv~Das~tr~~l~p-~vl~~l~~-ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v  223 (379)
T KOG1423|consen  146 LQNPRDAAQNADCVVVVVDASATRTPLHP-RVLHMLEE-YSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEV  223 (379)
T ss_pred             hhCHHHHHhhCCEEEEEEeccCCcCccCh-HHHHHHHH-HhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhH
Confidence              112235679999999999974322221 12222222 3489999999999964321              11101111


Q ss_pred             Hh-------------hcCC----eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCcc
Q 027607          142 HR-------------KKNL----QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV  190 (221)
Q Consensus       142 ~~-------------~~~~----~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~  190 (221)
                      ..             ..++    .+|.+|+++|.|++++.++|..+...+|..+..+-++..+++.
T Consensus       224 ~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~  289 (379)
T KOG1423|consen  224 QEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEF  289 (379)
T ss_pred             HHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHH
Confidence            11             1112    4899999999999999999999999999888777777664444

>cd00880 Era_like Era (E

Probab=99.81  E-value=5.5e-19  Score=125.47  Aligned_cols=149  Identities=18%  Similarity=0.230  Sum_probs=101.6

Q ss_pred             EEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccccc-------ccccccccEE
Q 027607           18 IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLR-------DGYYIHGQCA   89 (221)
Q Consensus        18 v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~~~-------~~~~~~~d~~   89 (221)
                      ++|++|||||||++++....... .....+.+........... ...+.+||+||........       ..++..+|++
T Consensus         1 i~G~~gsGKstl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i   79 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQEVAI-VSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI   79 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCccccc-cCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence            58999999999999977544331 2233333333333322222 5689999999976654433       3367889999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHH-----HHHHhhcCCeEEEecccCCCChHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-----VTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-----~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++|+|+.+........ +......  .+.|+++|+||+|+.........     .........+++++|+.++.|+.+++
T Consensus        80 l~v~~~~~~~~~~~~~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~  156 (163)
T cd00880          80 LFVVDADLRADEEEEK-LLELLRE--RGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELR  156 (163)
T ss_pred             EEEEeCCCCCCHHHHH-HHHHHHh--cCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHH
Confidence            9999999876655443 2222222  48999999999998654333222     23334456789999999999999999


Q ss_pred             HHHHHH
Q 027607          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      .++.+.
T Consensus       157 ~~l~~~  162 (163)
T cd00880         157 EALIEA  162 (163)
T ss_pred             HHHHhh
Confidence            998874

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.80  E-value=1.2e-18  Score=142.73  Aligned_cols=155  Identities=19%  Similarity=0.158  Sum_probs=105.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc---------------------------ccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------------YEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|+.++|||||+.+|+.  +.....                           .....|.+.+.....+...
T Consensus         4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~   83 (426)
T TIGR00483         4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETD   83 (426)
T ss_pred             CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccC
Confidence            45789999999999999999999885  222110                           1113356666666667777


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc-----
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV-----  134 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----  134 (221)
                      ...+.+|||||++.+.......+..+|++++|+|+++..++.... .+...+.......|+++|+||+|+.+...     
T Consensus        84 ~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~  163 (426)
T TIGR00483        84 KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEA  163 (426)
T ss_pred             CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHH
Confidence            789999999999887655555678999999999999885432211 11112222233467899999999864211     


Q ss_pred             -cHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607          135 -KAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       135 -~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~  164 (221)
                       ..+...+....+     ++++++|+++|.|+.+.+
T Consensus       164 ~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~  199 (426)
T TIGR00483       164 IKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS  199 (426)
T ss_pred             HHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence             122233444333     679999999999998643

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.80  E-value=1.6e-18  Score=124.47  Aligned_cols=148  Identities=15%  Similarity=0.153  Sum_probs=99.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------cccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRDGYYI   84 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~~~~~~   84 (221)
                      .|+++|++|||||||++.+..+.......++.+.+..........   .+.+|||||...          +......++.
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~   77 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE   77 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHHH
Confidence            389999999999999999887777677777777666554444333   789999999432          2222233333


Q ss_pred             ---cccEEEEEEECCChhhh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHH--hhcCCeEEEec
Q 027607           85 ---HGQCAIIMFDVTARLTY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFH--RKKNLQYYEIS  153 (221)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~--~~~~~~~~~~s  153 (221)
                         +.+++++++|.......  ..+..|+.   ..  +.|+++|+||+|+.......    ......  .....+++++|
T Consensus        78 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~--~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~S  152 (170)
T cd01876          78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL--GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFS  152 (170)
T ss_pred             hChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc--CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEe
Confidence               45788899998765322  11223332   22  68999999999985332211    111112  23456789999


Q ss_pred             ccCCCChHHHHHHHHHH
Q 027607          154 AKSNYNFEKPFLYLARK  170 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~  170 (221)
                      ++++.|+.+++++|.+.
T Consensus       153 a~~~~~~~~l~~~l~~~  169 (170)
T cd01876         153 SLKGQGIDELRALIEKW  169 (170)
T ss_pred             cCCCCCHHHHHHHHHHh
Confidence            99999999999998874

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK10218 GTP-binding protein; Provisional

Probab=99.80  E-value=2.7e-18  Score=144.40  Aligned_cols=156  Identities=16%  Similarity=0.210  Sum_probs=114.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc--CccCCc------------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      -.+|+|+|+.++|||||+++|+.  +.+...            ...+.|.+.......+.+++..+.+|||||+..+...
T Consensus         5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~   84 (607)
T PRK10218          5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE   84 (607)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence            46899999999999999999886  433222            1235677777777778888899999999999999988


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH---HHHHHH-------hhcCCe
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFH-------RKKNLQ  148 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~-------~~~~~~  148 (221)
                      +..+++.+|++++|+|+.+....+. ..++.....  .+.|.++++||+|+.+.....   +.....       ....++
T Consensus        85 v~~~l~~aDg~ILVVDa~~G~~~qt-~~~l~~a~~--~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~P  161 (607)
T PRK10218         85 VERVMSMVDSVLLVVDAFDGPMPQT-RFVTKKAFA--YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFP  161 (607)
T ss_pred             HHHHHHhCCEEEEEEecccCccHHH-HHHHHHHHH--cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCC
Confidence            8999999999999999987643322 223333322  378999999999986543322   222221       113467


Q ss_pred             EEEecccCCC----------ChHHHHHHHHHHH
Q 027607          149 YYEISAKSNY----------NFEKPFLYLARKL  171 (221)
Q Consensus       149 ~~~~s~~~~~----------gv~~~~~~l~~~l  171 (221)
                      ++.+|+.+|.          |+..+++.|...+
T Consensus       162 Vi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~i  194 (607)
T PRK10218        162 IVYASALNGIAGLDHEDMAEDMTPLYQAIVDHV  194 (607)
T ss_pred             EEEeEhhcCcccCCccccccchHHHHHHHHHhC
Confidence            8999999997          5778887777754

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.79  E-value=4.7e-18  Score=134.78  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=117.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc-----------
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-----------   80 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~-----------   80 (221)
                      ..+||+|+|.||+|||||+|+ +.+.......+..|+|++.+...+..+...+.++||+|..+-.....           
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~-ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~  255 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINA-ILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL  255 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHH-hccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence            459999999999999999999 55666778889999999999998888888999999999644322221           


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHH------HHHhhcCCeEEEec
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQV------TFHRKKNLQYYEIS  153 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~------~~~~~~~~~~~~~s  153 (221)
                      ..+..++.+++|+|++.+.+-++.+ ....+..  .+.++++|+||.|+.+.. ...+..      .+......+.+.+|
T Consensus       256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i~~--~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iS  332 (444)
T COG1160         256 KAIERADVVLLVIDATEGISEQDLR-IAGLIEE--AGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFIS  332 (444)
T ss_pred             hHHhhcCEEEEEEECCCCchHHHHH-HHHHHHH--cCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEE
Confidence            2256799999999999987655532 2222222  389999999999986541 221111      12222356789999


Q ss_pred             ccCCCChHHHHHHHHHHHhC
Q 027607          154 AKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~~  173 (221)
                      |++|.|+.++|+.+......
T Consensus       333 A~~~~~i~~l~~~i~~~~~~  352 (444)
T COG1160         333 ALTGQGLDKLFEAIKEIYEC  352 (444)
T ss_pred             ecCCCChHHHHHHHHHHHHH
Confidence            99999999999998875543

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.79  E-value=1.4e-18  Score=129.16  Aligned_cols=146  Identities=19%  Similarity=0.195  Sum_probs=95.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCc-----------------------------ccCCcceeeeeeEEEecCcEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------------------------YEPTIGVEVHPLDFFTNCGKIRFY   65 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~i~   65 (221)
                      ||+|+|.+|+|||||+++|+.....-.                             .....|.+.......+...+..+.
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~   80 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI   80 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence            689999999999999999875322100                             001145556655556666677899


Q ss_pred             EEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc------cHHHH
Q 027607           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV  139 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~  139 (221)
                      +|||||+..+.......+..+|++++|+|+++...-+.. .... +.......++++|+||+|+.+...      ..+..
T Consensus        81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~-~~~~-~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~  158 (208)
T cd04166          81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR-RHSY-ILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYL  158 (208)
T ss_pred             EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH-HHHH-HHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHH
Confidence            999999887655555667899999999999876322211 1111 222222345788999999864211      11222


Q ss_pred             HHHhhcC---CeEEEecccCCCChHH
Q 027607          140 TFHRKKN---LQYYEISAKSNYNFEK  162 (221)
Q Consensus       140 ~~~~~~~---~~~~~~s~~~~~gv~~  162 (221)
                      .+....+   .+++++||++|.|+.+
T Consensus       159 ~~~~~~~~~~~~ii~iSA~~g~ni~~  184 (208)
T cd04166         159 AFAAKLGIEDITFIPISALDGDNVVS  184 (208)
T ss_pred             HHHHHcCCCCceEEEEeCCCCCCCcc
Confidence            2333334   4589999999999975

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.79  E-value=3.5e-18  Score=128.84  Aligned_cols=150  Identities=15%  Similarity=0.060  Sum_probs=96.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-------cccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------LRDGYYIHGQ   87 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-------~~~~~~~~~d   87 (221)
                      +|+++|++|||||||+++|.+...  ......+++.......+...+..+++||+||......       .....++++|
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~~--~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad   79 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTKS--EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTAD   79 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc--cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCC
Confidence            789999999999999999775432  1222233333333333333557899999999754321       1234578999


Q ss_pred             EEEEEEECCChhh-hccHHHH--------------------------------------------HHHH-----------
Q 027607           88 CAIIMFDVTARLT-YKNVPTW--------------------------------------------HRDL-----------  111 (221)
Q Consensus        88 ~~i~v~d~~~~~s-~~~~~~~--------------------------------------------~~~~-----------  111 (221)
                      ++++|+|+++... ...+...                                            +..+           
T Consensus        80 ~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~  159 (233)
T cd01896          80 LILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIRE  159 (233)
T ss_pred             EEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEcc
Confidence            9999999987542 1111111                                            1111           


Q ss_pred             -----------HhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          112 -----------CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       112 -----------~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                                 .......|+++|+||+|+.....   ...++.  ...++++|+.+|.|++++|+.|.+.+
T Consensus       160 ~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~---~~~~~~--~~~~~~~SA~~g~gi~~l~~~i~~~L  225 (233)
T cd01896         160 DITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEE---LDLLAR--QPNSVVISAEKGLNLDELKERIWDKL  225 (233)
T ss_pred             CCCHHHHHHHHhCCceEeeEEEEEECccCCCHHH---HHHHhc--CCCEEEEcCCCCCCHHHHHHHHHHHh
Confidence                       11112358999999999854322   222332  34689999999999999999998854

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.79  E-value=1.8e-18  Score=145.56  Aligned_cols=154  Identities=16%  Similarity=0.243  Sum_probs=113.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc--CccCCc------------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT--GEFEKK------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~--~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      +|+|+|+.++|||||+++|+.  +.+...            .....|.+.......+.++++.+.+|||||+.++...+.
T Consensus         3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev~   82 (594)
T TIGR01394         3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEVE   82 (594)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHHH
Confidence            799999999999999999886  332221            122346666666667777789999999999999988888


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHH-------hhcCCeEE
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFH-------RKKNLQYY  150 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~-------~~~~~~~~  150 (221)
                      .+++.+|++++|+|+.+.. ......|+......  +.|+++|+||+|+.+...   ..+...+.       ....++++
T Consensus        83 ~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~--~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl  159 (594)
T TIGR01394        83 RVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL--GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIV  159 (594)
T ss_pred             HHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC--CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEE
Confidence            8999999999999998753 33334555554443  789999999999865332   12222222       12356799


Q ss_pred             EecccCCC----------ChHHHHHHHHHHH
Q 027607          151 EISAKSNY----------NFEKPFLYLARKL  171 (221)
Q Consensus       151 ~~s~~~~~----------gv~~~~~~l~~~l  171 (221)
                      .+|+++|.          |+..+|+.|.+.+
T Consensus       160 ~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       160 YASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             echhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            99999985          7999999888865

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.77  E-value=1.6e-17  Score=137.43  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=121.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------cccc--
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY--   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------~~~~--   83 (221)
                      +..+|+++|+||||||||+|++.+..  ..+.+-+|+|.+.++..+..++.+++++|.||.-......      +.|+  
T Consensus         2 ~~~~valvGNPNvGKTtlFN~LTG~~--q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~   79 (653)
T COG0370           2 KKLTVALVGNPNVGKTTLFNALTGAN--QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLE   79 (653)
T ss_pred             CcceEEEecCCCccHHHHHHHHhccC--ceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence            56789999999999999999965443  4567788999999999998888889999999954433321      2333  


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ...|+++-|+|+++.+..-.+..-+.++     +.|+++++|++|..+ +....+..++....|+++++++|.+|.|+++
T Consensus        80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~-----g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~  154 (653)
T COG0370          80 GKPDLIVNVVDATNLERNLYLTLQLLEL-----GIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEE  154 (653)
T ss_pred             CCCCEEEEEcccchHHHHHHHHHHHHHc-----CCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence            3569999999999976433322222222     899999999999865 4455667778889999999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027607          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +...+.+....+.
T Consensus       155 l~~~i~~~~~~~~  167 (653)
T COG0370         155 LKRAIIELAESKT  167 (653)
T ss_pred             HHHHHHHhccccc
Confidence            9998888654444

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.77  E-value=4.4e-18  Score=116.44  Aligned_cols=134  Identities=19%  Similarity=0.234  Sum_probs=87.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----ccccccccccEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LRDGYYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----~~~~~~~~~d~~i   90 (221)
                      ||+++|+.|||||||+++|.....  .+..|..+.+.            =.++||||.-..+.    .......++|.++
T Consensus         3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~~------------~~~IDTPGEyiE~~~~y~aLi~ta~dad~V~   68 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEYY------------DNTIDTPGEYIENPRFYHALIVTAQDADVVL   68 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEec------------ccEEECChhheeCHHHHHHHHHHHhhCCEEE
Confidence            799999999999999999554332  22233322111            13579999532221    1122245899999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHHHHHHhhcCC-eEEEecccCCCChHHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +|.|++++.+.-.- .+...+     ++|+|-|+||+|+.. ........++....|+ ..|.+|+.+|.|++++..+|.
T Consensus        69 ll~dat~~~~~~pP-~fa~~f-----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   69 LLQDATEPRSVFPP-GFASMF-----NKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             EEecCCCCCccCCc-hhhccc-----CCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            99999987543221 111111     789999999999983 2223333444455554 479999999999999988763

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.76  E-value=6.4e-19  Score=135.97  Aligned_cols=152  Identities=15%  Similarity=0.179  Sum_probs=97.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCc----ccC------------CcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK----YEP------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      +|+++|++|||||||+++++.......    ...            ..+.+.......+...+..+.+|||||...+...
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~   80 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE   80 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence            589999999999999999875321100    000            0122223333344445678999999998877667


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE--EEecccC
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY--YEISAKS  156 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~s~~~  156 (221)
                      +...+..+|++++|+|++..........|. .+..  .+.|.++++||+|............+....+.++  +.+...+
T Consensus        81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~--~~~p~iivvNK~D~~~~~~~~~~~~l~~~~~~~~~~~~ip~~~  157 (268)
T cd04170          81 TRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE--AGIPRIIFINKMDRERADFDKTLAALQEAFGRPVVPLQLPIGE  157 (268)
T ss_pred             HHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH--cCCCEEEEEECCccCCCCHHHHHHHHHHHhCCCeEEEEecccC
Confidence            777889999999999999865443333332 2222  3789999999999876543332333333344443  4455677


Q ss_pred             CCChHHHHHHHHH
Q 027607          157 NYNFEKPFLYLAR  169 (221)
Q Consensus       157 ~~gv~~~~~~l~~  169 (221)
                      |.++..+.+.+..
T Consensus       158 ~~~~~~~vd~~~~  170 (268)
T cd04170         158 GDDFKGVVDLLTE  170 (268)
T ss_pred             CCceeEEEEcccC
Confidence            7777665544443

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=2.5e-17  Score=115.26  Aligned_cols=157  Identities=21%  Similarity=0.212  Sum_probs=114.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc--------ccC----CcceeeeeeEEEecCcEEEEEEEecCCccccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK--------YEP----TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~--------~~~----~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~   76 (221)
                      ....+.||+|.|+-++||||++++++.......        +..    |...++...  .+. ....+.+++||||++++
T Consensus         6 ~k~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~--~~~-~~~~v~LfgtPGq~RF~   82 (187)
T COG2229           6 NKMIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSI--ELD-EDTGVHLFGTPGQERFK   82 (187)
T ss_pred             ccccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccce--EEc-CcceEEEecCCCcHHHH
Confidence            456789999999999999999999775442111        011    111111111  111 23678999999999999


Q ss_pred             cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc--CCeEEEecc
Q 027607           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK--NLQYYEISA  154 (221)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~--~~~~~~~s~  154 (221)
                      .+|.-+.+.+.++++++|.+.+..+ .....+.-+... ...|++|.+||.|+.+....++........  ..+.+..++
T Consensus        83 fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~a  160 (187)
T COG2229          83 FMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEIDA  160 (187)
T ss_pred             HHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cCCCEEEEeeccccCCCCCHHHHHHHHHhccCCCceeeeec
Confidence            9999999999999999999999877 323333333332 239999999999999887777666544444  789999999


Q ss_pred             cCCCChHHHHHHHHHH
Q 027607          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~  170 (221)
                      ..+.+..+.+..+...
T Consensus       161 ~e~~~~~~~L~~ll~~  176 (187)
T COG2229         161 TEGEGARDQLDVLLLK  176 (187)
T ss_pred             ccchhHHHHHHHHHhh
Confidence            9999999888776654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.76  E-value=2.2e-17  Score=121.13  Aligned_cols=147  Identities=16%  Similarity=0.083  Sum_probs=98.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      +.++|+++|..++|||||+++|+.....              .......|.+.......+..++..+.++||||...+..
T Consensus         1 ~~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~   80 (195)
T cd01884           1 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIK   80 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHH
Confidence            3589999999999999999998753110              01112445666666666666777899999999887766


Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc-----C
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK-----N  146 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~-----~  146 (221)
                      .....+..+|++++|+|+.....-+. ...+..+...  +.| +++++||+|+.......     +........     .
T Consensus        81 ~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~  157 (195)
T cd01884          81 NMITGAAQMDGAILVVSATDGPMPQT-REHLLLARQV--GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDN  157 (195)
T ss_pred             HHHHHhhhCCEEEEEEECCCCCcHHH-HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccC
Confidence            66666788999999999987532221 2222333222  566 77899999985322111     122222222     4


Q ss_pred             CeEEEecccCCCChH
Q 027607          147 LQYYEISAKSNYNFE  161 (221)
Q Consensus       147 ~~~~~~s~~~~~gv~  161 (221)
                      ++++++|+++|.++.
T Consensus       158 v~iipiSa~~g~n~~  172 (195)
T cd01884         158 TPIVRGSALKALEGD  172 (195)
T ss_pred             CeEEEeeCccccCCC
Confidence            679999999999853

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.76  E-value=1.5e-17  Score=139.53  Aligned_cols=152  Identities=23%  Similarity=0.261  Sum_probs=99.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCc----ccCCcceeeeeeEEEe------------cCcEEEEEEEecCCcccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDFFT------------NCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~~~------------~~~~~~i~~~D~~g~~~~   75 (221)
                      +...|+++|++++|||||+++|....+...    +..+.|.+........            ......+.+|||||++.+
T Consensus         3 r~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f   82 (590)
T TIGR00491         3 RSPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF   82 (590)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence            345799999999999999999887655322    1222332222111100            000113889999999999


Q ss_pred             ccccccccccccEEEEEEECCCh---hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--------------c---
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--------------K---  135 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--------------~---  135 (221)
                      ..++..+++.+|++++|+|+++.   .+++.+.    .+..  .+.|+++++||+|+.....              .   
T Consensus        83 ~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~----~l~~--~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v  156 (590)
T TIGR00491        83 TNLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV  156 (590)
T ss_pred             HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHH----HHHH--cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence            98888899999999999999874   3333222    2222  3789999999999853100              0   


Q ss_pred             -HHH--------HHHH--------------hhcCCeEEEecccCCCChHHHHHHHHH
Q 027607          136 -AKQ--------VTFH--------------RKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       136 -~~~--------~~~~--------------~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                       ...        ..+.              .....+++++||++|.|+.++..+|..
T Consensus       157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence             000        0001              011367999999999999999988865

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.76  E-value=1.6e-17  Score=135.03  Aligned_cols=159  Identities=17%  Similarity=0.157  Sum_probs=101.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--Ccceeeeee--------------------EEEecC------cEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVEVHPL--------------------DFFTNC------GKI   62 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~~~~~~~~~--------------------~~~~~~------~~~   62 (221)
                      .+.++|+++|..++|||||+++|. +.+......  ..|.+....                    ....+.      ...
T Consensus         2 ~~~~~i~iiG~~~~GKSTL~~~Lt-~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (406)
T TIGR03680         2 QPEVNIGMVGHVDHGKTTLTKALT-GVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR   80 (406)
T ss_pred             CceEEEEEEccCCCCHHHHHHHHh-CeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence            367999999999999999999864 332211111  111111100                    000011      146


Q ss_pred             EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHH
Q 027607           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQ  138 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~  138 (221)
                      .+.+||+||++.+...+......+|++++|+|+++..........+..+ ......|+++++||+|+.+....    .+.
T Consensus        81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l-~~~gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMAL-EIIGIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHH-HHcCCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            7999999999988777666777889999999999753112222222222 22234578999999998753221    111


Q ss_pred             HHHHhh---cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          139 VTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       139 ~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      ..+...   .+++++++|+++|.|+++++++|...+
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            222222   257899999999999999999998754

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.75  E-value=6.9e-18  Score=126.44  Aligned_cols=146  Identities=19%  Similarity=0.134  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc--C---------------------------CcccCCcceeeeeeEEEecCcEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGKIRFY   65 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~i~   65 (221)
                      +|+++|+.++|||||+.+|+....  .                           .......|++.+.....+..++..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            589999999999999999864211  0                           01112345666666666767788999


Q ss_pred             EEecCCccccccccccccccccEEEEEEECCChhh---h---ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---c-c
Q 027607           66 CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y---KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---V-K  135 (221)
Q Consensus        66 ~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~-~  135 (221)
                      +|||||+..+.......+..+|++++|+|+++...   +   .......... ......|+++++||+|+....   . .
T Consensus        81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLA-RTLGVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHH-HHcCCCeEEEEEEccccccccccHHHH
Confidence            99999987766555556778999999999998521   1   1111112222 222347899999999987321   1 1


Q ss_pred             HH----HHHHHhhc-----CCeEEEecccCCCChH
Q 027607          136 AK----QVTFHRKK-----NLQYYEISAKSNYNFE  161 (221)
Q Consensus       136 ~~----~~~~~~~~-----~~~~~~~s~~~~~gv~  161 (221)
                      .+    ........     .++++++||++|.|+.
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            11    11122222     3679999999999987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.75  E-value=1.4e-17  Score=125.81  Aligned_cols=117  Identities=19%  Similarity=0.173  Sum_probs=85.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      +|+++|+.|+|||||+++++......                ......+.+.......+.+++..+.+|||||+..+...
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~   80 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE   80 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence            58999999999999999987632110                00112334444555566667789999999999988888


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      +..+++.+|++++|+|+++..... ...++..+..  .+.|+++++||+|+.+...
T Consensus        81 ~~~~l~~aD~~IlVvd~~~g~~~~-~~~~~~~~~~--~~~P~iivvNK~D~~~a~~  133 (237)
T cd04168          81 VERSLSVLDGAILVISAVEGVQAQ-TRILWRLLRK--LNIPTIIFVNKIDRAGADL  133 (237)
T ss_pred             HHHHHHHhCeEEEEEeCCCCCCHH-HHHHHHHHHH--cCCCEEEEEECccccCCCH
Confidence            888899999999999999865432 2334444433  3789999999999876443

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.74  E-value=1.3e-19  Score=126.29  Aligned_cols=164  Identities=33%  Similarity=0.527  Sum_probs=136.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-EEEEEEecCCccccccccccccccccEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      .+++.|+|..|+|||+++++++...+...|..++|.++......-+... +++++||+.|++++..+...|++.+.+.++
T Consensus        25 L~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~~~i  104 (229)
T KOG4423|consen   25 LFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFI  104 (229)
T ss_pred             hhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcceEE
Confidence            4799999999999999999999988888888899887776655544443 588999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccH---HHHHHHhhcCC-eEEEecccCCCChHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNL-QYYEISAKSNYNFEK  162 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~-~~~~~s~~~~~gv~~  162 (221)
                      |||++....|+....|.+.+....     .-.|+++..||+|........   ...++++++++ ..+++|++.+.++.+
T Consensus       105 Vfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkni~E  184 (229)
T KOG4423|consen  105 VFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKNIPE  184 (229)
T ss_pred             EEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccChhH
Confidence            999999999999999999886542     246778889999987643333   34467777776 489999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027607          163 PFLYLARKLAGDPN  176 (221)
Q Consensus       163 ~~~~l~~~l~~~~~  176 (221)
                      +...++..+..+..
T Consensus       185 a~r~lVe~~lvnd~  198 (229)
T KOG4423|consen  185 AQRELVEKILVNDE  198 (229)
T ss_pred             HHHHHHHHHHhhcc
Confidence            99999998876653

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.74  E-value=1.1e-16  Score=114.51  Aligned_cols=155  Identities=14%  Similarity=0.110  Sum_probs=111.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc----------ccccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLRDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~----------~~~~~~~~~   81 (221)
                      .-.-|+++|.+|||||||+|+|++.......+.++|.|.....+.+++.   +.+.|.||-          +.+..+...
T Consensus        23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~   99 (200)
T COG0218          23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE   99 (200)
T ss_pred             CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence            5568999999999999999998887766788899999999988887765   788999992          233334444


Q ss_pred             ccc---cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-HHHhhc----CCe--EEE
Q 027607           82 YYI---HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK----NLQ--YYE  151 (221)
Q Consensus        82 ~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~----~~~--~~~  151 (221)
                      |+.   +..++++++|+.......+. .+++.+...  +.|+++++||+|........+.. ..+...    ...  ++.
T Consensus       100 YL~~R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~--~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~  176 (200)
T COG0218         100 YLEKRANLKGVVLLIDARHPPKDLDR-EMIEFLLEL--GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVL  176 (200)
T ss_pred             HHhhchhheEEEEEEECCCCCcHHHH-HHHHHHHHc--CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCccceEEE
Confidence            543   35688899999876543332 333333333  89999999999986644333222 222111    122  778


Q ss_pred             ecccCCCChHHHHHHHHHHHh
Q 027607          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      .|+..+.|++++...|.+.+.
T Consensus       177 ~ss~~k~Gi~~l~~~i~~~~~  197 (200)
T COG0218         177 FSSLKKKGIDELKAKILEWLK  197 (200)
T ss_pred             EecccccCHHHHHHHHHHHhh
Confidence            889999999999998888654

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.74  E-value=4.4e-17  Score=132.36  Aligned_cols=159  Identities=17%  Similarity=0.137  Sum_probs=99.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc--CCcceeeeeeE----E--------------E--ec------CcE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE--PTIGVEVHPLD----F--------------F--TN------CGK   61 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~--~~~~~~~~~~~----~--------------~--~~------~~~   61 (221)
                      ..+.++|+++|+.++|||||+.+|. +.+.....  ...|.+.....    .              .  ..      ...
T Consensus         6 ~~~~~ni~v~Gh~d~GKSTL~~~L~-~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (411)
T PRK04000          6 VQPEVNIGMVGHVDHGKTTLVQALT-GVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL   84 (411)
T ss_pred             CCCcEEEEEEccCCCCHHHHHHHhh-CeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence            4578999999999999999999863 33221111  11222222110    0              0  00      013


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----  136 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----  136 (221)
                      ..+.+|||||++.+..........+|++++|+|++++. ..+... .+..+ ......|+++|+||+|+.+.....    
T Consensus        85 ~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~-~l~~l-~~~~i~~iiVVlNK~Dl~~~~~~~~~~~  162 (411)
T PRK04000         85 RRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKE-HLMAL-DIIGIKNIVIVQNKIDLVSKERALENYE  162 (411)
T ss_pred             cEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHH-HHHHH-HHcCCCcEEEEEEeeccccchhHHHHHH
Confidence            57899999998877654444456679999999999653 112111 11222 222235789999999986532211    


Q ss_pred             HHHHHHhh---cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          137 KQVTFHRK---KNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       137 ~~~~~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      +...+...   .+.+++++|+++|.|++++++.|...+
T Consensus       163 ~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        163 QIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             HHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            12222221   257899999999999999999998865

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.74  E-value=2.1e-17  Score=133.65  Aligned_cols=191  Identities=15%  Similarity=0.194  Sum_probs=135.4

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+.+||+++|+.|+|||||+-+++...+.+.+.+....  -.+...+....+...+.|++..+..+.....-++.+
T Consensus         3 ~~~t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~--i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA   80 (625)
T KOG1707|consen    3 DDETLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPR--ILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKA   80 (625)
T ss_pred             CccCccceEEEEECCCCccHHHHHHHHHhhhccccccccCCc--cccCCccCcCcCceEEEecccccchhHHHHHHHhhc
Confidence            345678899999999999999999999998887655543321  111233344456689999987766666667778999


Q ss_pred             cEEEEEEECCChhhhccHH-HHHHHHHhhc---CCCCEEEEEeCCCcCCcccc-HHH----HHHHhhcCCeEEEecccCC
Q 027607           87 QCAIIMFDVTARLTYKNVP-TWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQ----VTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~-~~~----~~~~~~~~~~~~~~s~~~~  157 (221)
                      +++.++|+++++.+.+.+. .|+..+++..   -+.|+|+|+||+|....... .+.    +......--..++|||++.
T Consensus        81 ~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~  160 (625)
T KOG1707|consen   81 DVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTL  160 (625)
T ss_pred             CEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhh
Confidence            9999999999999988865 7888887765   58999999999998653332 111    1111111224688999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHH
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA  205 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~  205 (221)
                      .++.++|...-+++.....      |...+..+.+.+.........++
T Consensus       161 ~n~~e~fYyaqKaVihPt~------PLyda~~qelkp~~v~al~RIFk  202 (625)
T KOG1707|consen  161 ANVSELFYYAQKAVIHPTS------PLYDAEEQELKPRCVKALKRIFK  202 (625)
T ss_pred             hhhHhhhhhhhheeeccCc------cccccccccccHHHHHHHHHHHh
Confidence            9999999777776655443      44444555566666555544443

>cd04169 RF3 RF3 subfamily

Probab=99.73  E-value=5.6e-17  Score=124.48  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccC-Cc---c----------------cCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFE-KK---Y----------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~-~~---~----------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~   73 (221)
                      -+|+++|++|+|||||+++|+..... ..   .                ....+.+.......+.+++..+.+|||||+.
T Consensus         3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~   82 (267)
T cd04169           3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHE   82 (267)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCch
Confidence            57999999999999999998752111 00   0                0012334444455667778899999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      ++.......++.+|++++|+|+++..... ...++.....  .++|+++++||+|+.+...
T Consensus        83 df~~~~~~~l~~aD~~IlVvda~~g~~~~-~~~i~~~~~~--~~~P~iivvNK~D~~~a~~  140 (267)
T cd04169          83 DFSEDTYRTLTAVDSAVMVIDAAKGVEPQ-TRKLFEVCRL--RGIPIITFINKLDREGRDP  140 (267)
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCccHH-HHHHHHHHHh--cCCCEEEEEECCccCCCCH
Confidence            87776677788999999999998753322 2223333222  3789999999999876543

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.73  E-value=7e-18  Score=129.59  Aligned_cols=115  Identities=23%  Similarity=0.184  Sum_probs=82.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc--CC--------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF--EK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~--~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      +|+++|++|+|||||+++|+....  ..              ......|.+.......+.+++..+.+|||||...+...
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~   80 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE   80 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence            589999999999999999874211  00              01123455666556666667789999999998888777


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                      +...++.+|++++|+|+.+...-+. ...+.....  .++|+++++||+|+.+.
T Consensus        81 ~~~~l~~aD~ailVVDa~~g~~~~t-~~~~~~~~~--~~~p~ivviNK~D~~~a  131 (270)
T cd01886          81 VERSLRVLDGAVAVFDAVAGVEPQT-ETVWRQADR--YNVPRIAFVNKMDRTGA  131 (270)
T ss_pred             HHHHHHHcCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence            7888999999999999987542222 222333322  37899999999998753

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.72  E-value=1.4e-16  Score=134.12  Aligned_cols=153  Identities=24%  Similarity=0.274  Sum_probs=97.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcc----cCCcceeeeeeEEEe--cCcE-----E-----EEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFT--NCGK-----I-----RFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~-----~-----~i~~~D~~g~~~   74 (221)
                      .+...|+++|+.|+|||||+++|.+.......    ..+.|.+........  .+..     .     .+.+|||||++.
T Consensus         4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~   83 (586)
T PRK04004          4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA   83 (586)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence            35578999999999999999997543322111    112332222111100  0000     1     268999999999


Q ss_pred             cccccccccccccEEEEEEECCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc-----------------
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-----------------  134 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-----------------  134 (221)
                      +..++...+..+|++++|+|+++   +.++..+.    .+..  .+.|+++++||+|+...-.                 
T Consensus        84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~----~~~~--~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~  157 (586)
T PRK04004         84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAIN----ILKR--RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQR  157 (586)
T ss_pred             HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHH----HHHH--cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhHH
Confidence            98888888889999999999997   33433332    2222  3789999999999842100                 


Q ss_pred             cHH--------HHHHHhh---------------cCCeEEEecccCCCChHHHHHHHHH
Q 027607          135 KAK--------QVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       135 ~~~--------~~~~~~~---------------~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ..+        .......               ..++++++|+.+|.|+.+++..+..
T Consensus       158 v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        158 VQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence            000        0001111               2357899999999999998888764

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.72  E-value=2.3e-16  Score=133.48  Aligned_cols=154  Identities=13%  Similarity=0.046  Sum_probs=99.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcc--cCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      +-|+++|+.++|||||+++|.+- .....  ....|.|.......+. .++..+.+|||||++.+.......+..+|+++
T Consensus         1 ~ii~~~GhvdhGKTtLi~aLtg~-~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~l   79 (614)
T PRK10512          1 MIIATAGHVDHGKTTLLQAITGV-NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHAL   79 (614)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence            36899999999999999996632 11111  1123444433222221 12346899999999888666666688999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCcccc----HHHHHHHhhc---CCeEEEecccCCCChHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVK----AKQVTFHRKK---NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~----~~~~~~~~~~---~~~~~~~s~~~~~gv~~  162 (221)
                      +|+|+++...-+. ...+..+ ... +.| +++|+||+|+.+....    .+...+....   ..+++++|+++|.|+++
T Consensus        80 LVVda~eg~~~qT-~ehl~il-~~l-gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~  156 (614)
T PRK10512         80 LVVACDDGVMAQT-REHLAIL-QLT-GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDA  156 (614)
T ss_pred             EEEECCCCCcHHH-HHHHHHH-HHc-CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHH
Confidence            9999987432111 1112212 222 455 5799999998653221    1222333332   36799999999999999


Q ss_pred             HHHHHHHHH
Q 027607          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      +++.|....
T Consensus       157 L~~~L~~~~  165 (614)
T PRK10512        157 LREHLLQLP  165 (614)
T ss_pred             HHHHHHHhh
Confidence            999998754

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.72  E-value=1.4e-16  Score=117.42  Aligned_cols=158  Identities=16%  Similarity=0.213  Sum_probs=94.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcce---eeeeeEEEecCcEEEEEEEecCCccccccccccc-----cc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---EVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----YI   84 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~-----~~   84 (221)
                      +++|+++|.+|+|||||+|++++...........+.   +.....+.. .....+.+|||||..........|     +.
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~   79 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPH-PKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS   79 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeec-CCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence            479999999999999999998764433222222221   111111111 112368999999975432222222     56


Q ss_pred             cccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc---------cHH----HHHHH----hh--
Q 027607           85 HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV---------KAK----QVTFH----RK--  144 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---------~~~----~~~~~----~~--  144 (221)
                      .+|+++++.+.    ++.... .|+..+...  +.|+++|+||+|+.....         ..+    ..+.+    ..  
T Consensus        80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~  153 (197)
T cd04104          80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG  153 (197)
T ss_pred             CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence            78888887432    233332 445555443  689999999999732111         011    11111    11  


Q ss_pred             -cCCeEEEeccc--CCCChHHHHHHHHHHHhCCCCC
Q 027607          145 -KNLQYYEISAK--SNYNFEKPFLYLARKLAGDPNL  177 (221)
Q Consensus       145 -~~~~~~~~s~~--~~~gv~~~~~~l~~~l~~~~~~  177 (221)
                       ...+++.+|+.  .+.++..+.+.+...+....+.
T Consensus       154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~~  189 (197)
T cd04104         154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKRH  189 (197)
T ss_pred             CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHHH
Confidence             12368889998  5789999999999987665543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.72  E-value=1.5e-16  Score=119.07  Aligned_cols=152  Identities=14%  Similarity=0.172  Sum_probs=94.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccC-----------------------CcceeeeeeE-------------EEec
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-----------------------TIGVEVHPLD-------------FFTN   58 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~-----------------------~~~~~~~~~~-------------~~~~   58 (221)
                      ||+++|+.++|||||+++|..+.+......                       ..|.+.....             ..+.
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            689999999999999999887555321100                       0111110000             0112


Q ss_pred             CcEEEEEEEecCCcccccccccccc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH
Q 027607           59 CGKIRFYCWDTAGQEKFGGLRDGYY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        59 ~~~~~i~~~D~~g~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  136 (221)
                      ..+..+.++||||++.+.......+  ..+|++++|+|+.....-. ...++..+..  .++|+++|+||+|+.++....
T Consensus        81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~-d~~~l~~l~~--~~ip~ivvvNK~D~~~~~~~~  157 (224)
T cd04165          81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGM-TKEHLGLALA--LNIPVFVVVTKIDLAPANILQ  157 (224)
T ss_pred             eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHH-HHHHHHHHHH--cCCCEEEEEECccccCHHHHH
Confidence            2346789999999987754433333  3689999999998754322 2223333333  278999999999985433222


Q ss_pred             HHH----HHHh--------------------------hcCCeEEEecccCCCChHHHHHHHHH
Q 027607          137 KQV----TFHR--------------------------KKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       137 ~~~----~~~~--------------------------~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +..    ....                          ....+++.+|+.+|.|++++...|..
T Consensus       158 ~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         158 ETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             HHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            211    1111                          11347899999999999998877654

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.71  E-value=1.9e-16  Score=120.54  Aligned_cols=159  Identities=16%  Similarity=0.155  Sum_probs=110.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----cccccc----
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----KFGGLR----   79 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----~~~~~~----   79 (221)
                      .+....+|+|.|.||||||||++++.+..  +...+.+-+|-....+.+..+..+++++||||.-     +.+.+-    
T Consensus       164 Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi  241 (346)
T COG1084         164 IDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI  241 (346)
T ss_pred             CCCCCCeEEEecCCCCcHHHHHHHHhcCC--CccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence            56678899999999999999999966443  3445566555566666777777899999999941     111111    


Q ss_pred             ccccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhc-CCeEEEecccC
Q 027607           80 DGYYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKK-NLQYYEISAKS  156 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~s~~~  156 (221)
                      ...-.-.++++|++|.+...  +.+....++..+..... .|+++|+||+|..+.....+........ +.....+++..
T Consensus       242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  320 (346)
T COG1084         242 LALRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATK  320 (346)
T ss_pred             HHHHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHHHHHHhhccccccceeeee
Confidence            11122368899999998654  44555566666666554 8999999999988655544444333333 34477788888


Q ss_pred             CCChHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARK  170 (221)
Q Consensus       157 ~~gv~~~~~~l~~~  170 (221)
                      +.+++.+...+...
T Consensus       321 ~~~~d~~~~~v~~~  334 (346)
T COG1084         321 GCGLDKLREEVRKT  334 (346)
T ss_pred             hhhHHHHHHHHHHH
Confidence            88988877777665

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.71  E-value=2.1e-16  Score=119.51  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=106.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEE-EEEEEecCCcccc----ccccccc---cccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQEKF----GGLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~D~~g~~~~----~~~~~~~---~~~~   86 (221)
                      .|+++|.||+|||||++++...+  +.+.+..-+|..+....+..... .+.+-|+||.-+-    +.+-..|   +..+
T Consensus       198 dvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~  275 (366)
T KOG1489|consen  198 DVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIERC  275 (366)
T ss_pred             ccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHhh
Confidence            57899999999999999966544  35566666777776665544443 4899999996433    3333344   4568


Q ss_pred             cEEEEEEECCCh---hhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCccccHHHHHHHhhcC-CeEEEecccCCCC
Q 027607           87 QCAIIMFDVTAR---LTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYN  159 (221)
Q Consensus        87 d~~i~v~d~~~~---~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~g  159 (221)
                      +.+++|+|++..   ..++.+..+..++..+   ..++|.++|+||+|+++.+... ..++..... -.++++||++++|
T Consensus       276 ~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~-l~~L~~~lq~~~V~pvsA~~~eg  354 (366)
T KOG1489|consen  276 KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNL-LSSLAKRLQNPHVVPVSAKSGEG  354 (366)
T ss_pred             ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHHHH-HHHHHHHcCCCcEEEeeeccccc
Confidence            999999999988   6666666555555444   4689999999999986322221 123333333 3589999999999


Q ss_pred             hHHHHHHHHH
Q 027607          160 FEKPFLYLAR  169 (221)
Q Consensus       160 v~~~~~~l~~  169 (221)
                      +..+...|.+
T Consensus       355 l~~ll~~lr~  364 (366)
T KOG1489|consen  355 LEELLNGLRE  364 (366)
T ss_pred             hHHHHHHHhh
Confidence            9998877654

>PRK12736 elongation factor Tu; Reviewed

Probab=99.71  E-value=2.6e-16  Score=127.44  Aligned_cols=159  Identities=14%  Similarity=0.070  Sum_probs=104.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      ..+.++|+++|+.++|||||+++|+.....              .......|.+.......+..+...+.++||||++++
T Consensus         9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f   88 (394)
T PRK12736          9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHH
Confidence            667899999999999999999998742110              011124466666666666666678899999998877


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc----
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK----  145 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~----  145 (221)
                      .......+..+|++++|+|++....-+. ...+..+..  .++| +++++||+|+.+.....     +...+....    
T Consensus        89 ~~~~~~~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~--~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~  165 (394)
T PRK12736         89 VKNMITGAAQMDGAILVVAATDGPMPQT-REHILLARQ--VGVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPG  165 (394)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCc
Confidence            6555555678899999999987532222 222222222  2677 67889999986422111     222222222    


Q ss_pred             -CCeEEEecccCCC--------ChHHHHHHHHHHH
Q 027607          146 -NLQYYEISAKSNY--------NFEKPFLYLARKL  171 (221)
Q Consensus       146 -~~~~~~~s~~~~~--------gv~~~~~~l~~~l  171 (221)
                       ..+++++|+++|.        ++..+++.|.+.+
T Consensus       166 ~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        166 DDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             CCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence             2579999999983        4566666666543

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.71  E-value=4.5e-16  Score=116.08  Aligned_cols=160  Identities=14%  Similarity=0.177  Sum_probs=103.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccc-----cccccccccccE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFG-----GLRDGYYIHGQC   88 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~-----~~~~~~~~~~d~   88 (221)
                      ||+++|+.||||||+.+.+..+.. +.-....+.|.......+ ..+.+.+.+||+||+..+.     ......++++.+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~~~-p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~   79 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHKYS-PRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGV   79 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESE
T ss_pred             CEEEEcCCCCChhhHHHHHHcCCC-chhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccccHHHHHhccCE
Confidence            799999999999999998655443 322334444444434333 2456799999999986543     234667899999


Q ss_pred             EEEEEECCChhhhc---cHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH--------HHHHHhhcC---CeEEEecc
Q 027607           89 AIIMFDVTARLTYK---NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK--------QVTFHRKKN---LQYYEISA  154 (221)
Q Consensus        89 ~i~v~d~~~~~s~~---~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~--------~~~~~~~~~---~~~~~~s~  154 (221)
                      +|+|+|+....-.+   .+...+..+...+++..+.++++|+|+.......+        ........+   +.++.+|.
T Consensus        80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~TSI  159 (232)
T PF04670_consen   80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLTSI  159 (232)
T ss_dssp             EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE-T
T ss_pred             EEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEeccC
Confidence            99999998544333   33445555666778999999999999854332222        223333444   78899998


Q ss_pred             cCCCChHHHHHHHHHHHhCCCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~  176 (221)
                      .+ ..+-++|..|.+.+.++..
T Consensus       160 ~D-~Sly~A~S~Ivq~LiP~~~  180 (232)
T PF04670_consen  160 WD-ESLYEAWSKIVQKLIPNLS  180 (232)
T ss_dssp             TS-THHHHHHHHHHHTTSTTHC
T ss_pred             cC-cHHHHHHHHHHHHHcccHH
Confidence            87 6899999999998876544

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>cd04167 Snu114p Snu114p subfamily

Probab=99.70  E-value=1.8e-16  Score=118.38  Aligned_cols=113  Identities=22%  Similarity=0.274  Sum_probs=79.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCc-----------c------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKK-----------Y------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQ   72 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~-----------~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~   72 (221)
                      +|+++|+.|+|||||+++|+.......           +      ....|.+.......+     .+..+.+.+|||||+
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999886443211           0      011223332222222     345688999999999


Q ss_pred             cccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           73 EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      ..+......++..+|++++|+|+++..+... ..++.....  .+.|+++|+||+|+.
T Consensus        82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~--~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL--EGLPIVLVINKIDRL  136 (213)
T ss_pred             cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH--cCCCEEEEEECcccC
Confidence            9887777888899999999999987765432 233333322  368999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>PRK12735 elongation factor Tu; Reviewed

Probab=99.70  E-value=3.8e-16  Score=126.61  Aligned_cols=159  Identities=12%  Similarity=0.027  Sum_probs=103.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+.+.++|+++|..++|||||+++|+....              ........|.+.......+..+...+.++||||+..
T Consensus         8 ~~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~   87 (396)
T PRK12735          8 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHAD   87 (396)
T ss_pred             CCCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHH
Confidence            356789999999999999999999875200              001112445666655555666667889999999987


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCcccc-----HHHHHHHhhc---
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKK---  145 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~-----~~~~~~~~~~---  145 (221)
                      +.......+..+|++++|+|+......+ ....+..+..  .++|.+ +++||+|+.+....     .+...+....   
T Consensus        88 f~~~~~~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~  164 (396)
T PRK12735         88 YVKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFP  164 (396)
T ss_pred             HHHHHHhhhccCCEEEEEEECCCCCchh-HHHHHHHHHH--cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCC
Confidence            7655556677899999999998753222 1222222222  367865 57999998642211     1222223222   


Q ss_pred             --CCeEEEecccCCC----------ChHHHHHHHHHH
Q 027607          146 --NLQYYEISAKSNY----------NFEKPFLYLARK  170 (221)
Q Consensus       146 --~~~~~~~s~~~~~----------gv~~~~~~l~~~  170 (221)
                        .++++++|+++|.          ++..+++.|...
T Consensus       165 ~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        165 GDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             cCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence              3678999999984          556666666553

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.70  E-value=3e-16  Score=127.23  Aligned_cols=147  Identities=14%  Similarity=0.051  Sum_probs=96.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+.+.++|+++|+.++|||||+++|+....              ........|.|.......+..++..+.+|||||+++
T Consensus         8 ~~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~   87 (394)
T TIGR00485         8 RTKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHAD   87 (394)
T ss_pred             CCCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHH
Confidence            367889999999999999999999863200              001112356666666666766777899999999987


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCcccc-----HHHHHHHhhcC--
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVK-----AKQVTFHRKKN--  146 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~-----~~~~~~~~~~~--  146 (221)
                      +..........+|++++|+|+......+.. ..+..+..  .+.|.+ +++||+|+.+....     .+...+....+  
T Consensus        88 f~~~~~~~~~~~D~~ilVvda~~g~~~qt~-e~l~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~  164 (394)
T TIGR00485        88 YVKNMITGAAQMDGAILVVSATDGPMPQTR-EHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFP  164 (394)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHHH-HHHHHHHH--cCCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            765444456678999999999875322221 22222222  266765 68999998643211     12223333332  


Q ss_pred             ---CeEEEecccCCC
Q 027607          147 ---LQYYEISAKSNY  158 (221)
Q Consensus       147 ---~~~~~~s~~~~~  158 (221)
                         ++++++|+.+|.
T Consensus       165 ~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       165 GDDTPIIRGSALKAL  179 (394)
T ss_pred             ccCccEEECcccccc
Confidence               689999999875

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=6.2e-17  Score=110.97  Aligned_cols=154  Identities=18%  Similarity=0.281  Sum_probs=116.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.=|++++|-.|+|||||++++- +.-.....||.-.+.....+    ++..++.+|.+|+...+..|..|+..++++++
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLK-dDrl~qhvPTlHPTSE~l~I----g~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~   93 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLK-DDRLGQHVPTLHPTSEELSI----GGMTFTTFDLGGHLQARRVWKDYFPQVDAIVY   93 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHc-cccccccCCCcCCChHHhee----cCceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence            45689999999999999999844 44444555555545444444    67899999999999889999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH------HHHhhcC-----------CeEEEe
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV------TFHRKKN-----------LQYYEI  152 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~------~~~~~~~-----------~~~~~~  152 (221)
                      ++|+-+.+.|...+..+..+...  ....|+++.+||+|.+.....++..      .++...+           ...+.|
T Consensus        94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~evfmc  173 (193)
T KOG0077|consen   94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEVFMC  173 (193)
T ss_pred             eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEEEEEE
Confidence            99999999998888776665443  3689999999999997755332211      2222211           346778


Q ss_pred             cccCCCChHHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~  170 (221)
                      |...+.|..+.|.|+...
T Consensus       174 si~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  174 SIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             EEEccCccceeeeehhhh
Confidence            988888888888777654

>cd01850 CDC_Septin CDC/Septin

Probab=99.68  E-value=1.3e-15  Score=117.50  Aligned_cols=140  Identities=17%  Similarity=0.268  Sum_probs=86.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCc----------ccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-----
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-----   76 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-----   76 (221)
                      -.++|+|+|.+|+|||||+|+++.......          ...+.+..........++..+.+.+|||||.....     
T Consensus         3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~   82 (276)
T cd01850           3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC   82 (276)
T ss_pred             cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence            358999999999999999999887766432          23333344444445555666889999999943221     


Q ss_pred             ---------------------cccccccc--cccEEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           77 ---------------------GLRDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        77 ---------------------~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                                           ..+...+.  .+++++++++.+.. .+... ...+..+.   ..+|+++|+||+|+...
T Consensus        83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~---~~v~vi~VinK~D~l~~  158 (276)
T cd01850          83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS---KRVNIIPVIAKADTLTP  158 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh---ccCCEEEEEECCCcCCH
Confidence                                 11113333  35677777776542 12221 12233332   37899999999998542


Q ss_pred             c----ccHHHHHHHhhcCCeEEEeccc
Q 027607          133 Q----VKAKQVTFHRKKNLQYYEISAK  155 (221)
Q Consensus       133 ~----~~~~~~~~~~~~~~~~~~~s~~  155 (221)
                      .    ......+.....+++++.....
T Consensus       159 ~e~~~~k~~i~~~l~~~~i~~~~~~~~  185 (276)
T cd01850         159 EELKEFKQRIMEDIEEHNIKIYKFPED  185 (276)
T ss_pred             HHHHHHHHHHHHHHHHcCCceECCCCC
Confidence            2    2223345666778888876653

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.68  E-value=9.2e-16  Score=122.21  Aligned_cols=161  Identities=16%  Similarity=0.175  Sum_probs=111.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-ccccc--------ccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLR--------DGY   82 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~--------~~~   82 (221)
                      ..++|+++|+||+|||||+|+ +.+.....+.+..|+|++.+...++-.++.+.+.||+|..+ .....        ..-
T Consensus       267 ~gl~iaIvGrPNvGKSSLlNa-L~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~  345 (531)
T KOG1191|consen  267 SGLQIAIVGRPNVGKSSLLNA-LSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR  345 (531)
T ss_pred             cCCeEEEEcCCCCCHHHHHHH-HhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence            458999999999999999998 55666688899999999999999998899999999999655 11111        223


Q ss_pred             cccccEEEEEEECCChhhhcc--HHHHHHHHHhhc-------CCCCEEEEEeCCCcCCcc--ccHHHHHHHh---hcCCe
Q 027607           83 YIHGQCAIIMFDVTARLTYKN--VPTWHRDLCRVC-------ENIPIVLCGNKVDVKNRQ--VKAKQVTFHR---KKNLQ  148 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~-------~~~p~ivv~nK~D~~~~~--~~~~~~~~~~---~~~~~  148 (221)
                      +..+|++++|+|+.....-+.  +...+.....-.       .+.+++++.||.|+....  .......+..   ....+
T Consensus       346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~  425 (531)
T KOG1191|consen  346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFP  425 (531)
T ss_pred             HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccccCcccc
Confidence            668999999999944322222  222222221111       247899999999986431  1111111111   11233


Q ss_pred             -EEEecccCCCChHHHHHHHHHHHhC
Q 027607          149 -YYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       149 -~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                       ..++|+++++|+..+...|...+..
T Consensus       426 i~~~vs~~tkeg~~~L~~all~~~~~  451 (531)
T KOG1191|consen  426 IVVEVSCTTKEGCERLSTALLNIVER  451 (531)
T ss_pred             eEEEeeechhhhHHHHHHHHHHHHHH
Confidence             4559999999999999998887654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.67  E-value=2.2e-15  Score=111.06  Aligned_cols=163  Identities=12%  Similarity=-0.006  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc-----------cccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL-----------RDGY   82 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~-----------~~~~   82 (221)
                      ++|+++|.+|||||||+|++++...........+.|...........+..+.++||||.......           ....
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~   80 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS   80 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhc
Confidence            58999999999999999998866543222222334443333333335568999999996543211           0112


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccc--------cHHHHHHHhhcCCeEEE
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQV--------KAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~~  151 (221)
                      ....+++++|+++.. .+-. ....+..+....   .-.++++|+|+.|......        ...........+-.++.
T Consensus        81 ~~g~~~illVi~~~~-~t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGR-FTEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCC-cCHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            356899999999876 2221 122333333322   2368899999999644321        11222233333334433


Q ss_pred             ec-----ccCCCChHHHHHHHHHHHhCCCCCc
Q 027607          152 IS-----AKSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       152 ~s-----~~~~~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      .+     +..+.++.++++.|.+.+..+....
T Consensus       159 f~~~~~~~~~~~q~~~Ll~~i~~~~~~~~~~~  190 (196)
T cd01852         159 FNNKAKGEEQEQQVKELLAKVESMVKENGGKP  190 (196)
T ss_pred             EeCCCCcchhHHHHHHHHHHHHHHHHhcCCCC
Confidence            33     4567899999999999888744433

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.67  E-value=1.5e-15  Score=118.79  Aligned_cols=165  Identities=18%  Similarity=0.313  Sum_probs=100.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccC------CcccCCcceeeeeeEE---------------EecC-cEEEEEEEecCCc-
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFE------KKYEPTIGVEVHPLDF---------------FTNC-GKIRFYCWDTAGQ-   72 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~------~~~~~~~~~~~~~~~~---------------~~~~-~~~~i~~~D~~g~-   72 (221)
                      |+++|.+|||||||+|++......      ..+.++.|.......+               ..++ ..+.+++||+||. 
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv   80 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV   80 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence            689999999999999998766532      1122333322221100               0111 3468999999997 


Q ss_pred             ---cccccccccc---cccccEEEEEEECCCh---------------h-hhc----cHHHH-------------------
Q 027607           73 ---EKFGGLRDGY---YIHGQCAIIMFDVTAR---------------L-TYK----NVPTW-------------------  107 (221)
Q Consensus        73 ---~~~~~~~~~~---~~~~d~~i~v~d~~~~---------------~-s~~----~~~~~-------------------  107 (221)
                         +...++...+   ++++|++++|+|++..               . .++    .+..|                   
T Consensus        81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~  160 (318)
T cd01899          81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE  160 (318)
T ss_pred             CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence               3444444444   8899999999999731               0 010    01111                   


Q ss_pred             -------HH-HHH--------------h----------------------hcCCCCEEEEEeCCCcCCccccHHHHHHHh
Q 027607          108 -------HR-DLC--------------R----------------------VCENIPIVLCGNKVDVKNRQVKAKQVTFHR  143 (221)
Q Consensus       108 -------~~-~~~--------------~----------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~  143 (221)
                             .. .+.              .                      ....+|+++|+||.|+.......+... ..
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~~~~l~-~~  239 (318)
T cd01899         161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENNISKLR-LK  239 (318)
T ss_pred             CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHHHHHHH-hh
Confidence                   00 000              0                      012469999999999753322112111 22


Q ss_pred             hcCCeEEEecccCCCChHHHHH-HHHHHHhCCCCCcccc
Q 027607          144 KKNLQYYEISAKSNYNFEKPFL-YLARKLAGDPNLHFVE  181 (221)
Q Consensus       144 ~~~~~~~~~s~~~~~gv~~~~~-~l~~~l~~~~~~~~~~  181 (221)
                      .....++.+||+.+.++.++.+ .+.+.+...+.+....
T Consensus       240 ~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~~~f~~~~  278 (318)
T cd01899         240 YPDEIVVPTSAEAELALRRAAKQGLIKYDPGDSDFEITD  278 (318)
T ss_pred             CCCCeEEEEeCcccccHHHHHHhhHHHhCCCCCCceecc
Confidence            2356799999999999999997 6999888887666544

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>CHL00071 tufA elongation factor Tu

Probab=99.66  E-value=2.5e-15  Score=122.33  Aligned_cols=147  Identities=14%  Similarity=0.058  Sum_probs=97.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      +.+.++|+++|.+++|||||+++|+.....              .......|.+.......+..+...+.++||||+..+
T Consensus         9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~   88 (409)
T CHL00071          9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY   88 (409)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHH
Confidence            567899999999999999999998853110              011122566666666666666778899999998776


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhhc----
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRKK----  145 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~~----  145 (221)
                      .......+..+|++++|+|+.....-+. ...+..+..  .+.| +++++||+|+.+.....     +...+....    
T Consensus        89 ~~~~~~~~~~~D~~ilVvda~~g~~~qt-~~~~~~~~~--~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~  165 (409)
T CHL00071         89 VKNMITGAAQMDGAILVVSAADGPMPQT-KEHILLAKQ--VGVPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPG  165 (409)
T ss_pred             HHHHHHHHHhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5555566778999999999986532221 222222222  2678 67899999986532211     122222222    


Q ss_pred             -CCeEEEecccCCCC
Q 027607          146 -NLQYYEISAKSNYN  159 (221)
Q Consensus       146 -~~~~~~~s~~~~~g  159 (221)
                       .++++++|+.+|.+
T Consensus       166 ~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        166 DDIPIVSGSALLALE  180 (409)
T ss_pred             CcceEEEcchhhccc
Confidence             36799999998864

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=1.6e-15  Score=131.08  Aligned_cols=117  Identities=21%  Similarity=0.238  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC----Cccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      ...+|+|+|+.|+|||||+++|+.....    ....            ...+.+.......+.+....+.+|||||+.++
T Consensus         7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df   86 (687)
T PRK13351          7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF   86 (687)
T ss_pred             cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence            4579999999999999999998753210    0000            01233344334455556789999999999888


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      ...+..+++.+|++++|+|+++....+....|. .+..  .++|+++|+||+|+..
T Consensus        87 ~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~--~~~p~iiviNK~D~~~  139 (687)
T PRK13351         87 TGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR--YGIPRLIFINKMDRVG  139 (687)
T ss_pred             HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh--cCCCEEEEEECCCCCC
Confidence            888888899999999999999876655444442 2322  3789999999999754

>COG2262 HflX GTPases [General function prediction only]

Probab=99.65  E-value=5.2e-15  Score=116.04  Aligned_cols=170  Identities=16%  Similarity=0.122  Sum_probs=109.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccc--ccccccc--
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF--GGLRDGY--   82 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~--~~~~~~~--   82 (221)
                      ....-..|+++|.+|+|||||+|++.......  ......|.++.  .+.+.+ +..+.+-||-|.-+.  ..+...|  
T Consensus       188 ~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFks  264 (411)
T COG2262         188 SRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKS  264 (411)
T ss_pred             cccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHH
Confidence            34456789999999999999999966433221  22222233333  333333 457788899994221  1111222  


Q ss_pred             ----cccccEEEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCC
Q 027607           83 ----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        83 ----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                          ...+|.++.|+|++++.....+......+... ....|+++|.||+|+......   ........-..+.+||++|
T Consensus       265 TLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~---~~~~~~~~~~~v~iSA~~~  341 (411)
T COG2262         265 TLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEI---LAELERGSPNPVFISAKTG  341 (411)
T ss_pred             HHHHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhh---hhhhhhcCCCeEEEEeccC
Confidence                45799999999999997666665555545443 257999999999997544331   1111111115899999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPA  184 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~  184 (221)
                      .|++.+++.|...+........+.-|.
T Consensus       342 ~gl~~L~~~i~~~l~~~~~~~~l~lp~  368 (411)
T COG2262         342 EGLDLLRERIIELLSGLRTEVTLELPY  368 (411)
T ss_pred             cCHHHHHHHHHHHhhhcccceEEEcCc
Confidence            999999999999887655444444333

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.65  E-value=4.5e-16  Score=116.12  Aligned_cols=113  Identities=18%  Similarity=0.220  Sum_probs=77.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccC--Ccc------------cCCcceeeeee--EEEec--------CcEEEEEEEecC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFE--KKY------------EPTIGVEVHPL--DFFTN--------CGKIRFYCWDTA   70 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~--~~~------------~~~~~~~~~~~--~~~~~--------~~~~~i~~~D~~   70 (221)
                      +|+++|+.++|||||+.+|+.....  ...            ....|.+....  ...+.        +....+.+||||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            7999999999999999998753221  000            00112222211  12222        336889999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      |+..+......+++.+|++++|+|+......+....+.. ...  .+.|+++|+||+|+.
T Consensus        82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~-~~~--~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQ-ALK--ERVKPVLVINKIDRL  138 (222)
T ss_pred             CccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHH-HHH--cCCCEEEEEECCCcc
Confidence            999998888889999999999999998765544322222 222  368999999999975

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.65  E-value=2.2e-15  Score=122.46  Aligned_cols=147  Identities=17%  Similarity=0.232  Sum_probs=95.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccC--C-----------------------------cccCCcceeeeeeEEEecCcEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFE--K-----------------------------KYEPTIGVEVHPLDFFTNCGKI   62 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   62 (221)
                      ++|+++|+.++|||||+.+|+.....  .                             ......|.+.+.....+..+..
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            58999999999999999998743211  0                             0011223444554555556677


Q ss_pred             EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc------H
Q 027607           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK------A  136 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~------~  136 (221)
                      .+.++||||++.+.......+..+|++++|+|+.....-+....+.  +.......++++++||+|+.+....      .
T Consensus        81 ~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~--~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~  158 (406)
T TIGR02034        81 KFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY--IASLLGIRHVVLAVNKMDLVDYDEEVFENIKK  158 (406)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH--HHHHcCCCcEEEEEEecccccchHHHHHHHHH
Confidence            8999999999887655555678999999999998764333222221  1222224568899999998642211      1


Q ss_pred             HHHHHHhhc---CCeEEEecccCCCChHH
Q 027607          137 KQVTFHRKK---NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       137 ~~~~~~~~~---~~~~~~~s~~~~~gv~~  162 (221)
                      +...+....   ..+++++|+++|.|+.+
T Consensus       159 ~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       159 DYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             HHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            111122222   35699999999999875

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.65  E-value=3e-15  Score=122.63  Aligned_cols=149  Identities=17%  Similarity=0.207  Sum_probs=101.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccC--C---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--K---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|+.++|||||+.+|+.....  .                           ......|.+.......+...
T Consensus         4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~   83 (447)
T PLN00043          4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT   83 (447)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC
Confidence            468899999999999999999988752210  0                           01112344555555556677


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhc-------cHHHHHHHHHhhcCCC-CEEEEEeCCCcCCc
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYK-------NVPTWHRDLCRVCENI-PIVLCGNKVDVKNR  132 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~  132 (221)
                      +..+.++|+||+++|.......+..+|++++|+|+++. +|+       .....+... . ..++ ++++++||+|+.+.
T Consensus        84 ~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~-~-~~gi~~iIV~vNKmD~~~~  160 (447)
T PLN00043         84 KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLA-F-TLGVKQMICCCNKMDATTP  160 (447)
T ss_pred             CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHH-H-HcCCCcEEEEEEcccCCch
Confidence            78999999999999988888888999999999999873 232       122211111 1 1256 57889999997622


Q ss_pred             c--------ccHHHHHHHhhcC-----CeEEEecccCCCChH
Q 027607          133 Q--------VKAKQVTFHRKKN-----LQYYEISAKSNYNFE  161 (221)
Q Consensus       133 ~--------~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~  161 (221)
                      .        ...+...+....+     ++++++|+++|.|+.
T Consensus       161 ~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~  202 (447)
T PLN00043        161 KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI  202 (447)
T ss_pred             hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence            1        1223334444444     679999999999984

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.65  E-value=2e-15  Score=124.57  Aligned_cols=152  Identities=16%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc------------c-------------------CCcceeeeeeEEEec
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY------------E-------------------PTIGVEVHPLDFFTN   58 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~------------~-------------------~~~~~~~~~~~~~~~   58 (221)
                      ..+.++|+++|+.++|||||+.+|+.....-..            .                   ...|.+.+.....+.
T Consensus        24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~  103 (474)
T PRK05124         24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS  103 (474)
T ss_pred             ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence            467799999999999999999998754221000            0                   012333444444455


Q ss_pred             CcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cH
Q 027607           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KA  136 (221)
Q Consensus        59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~  136 (221)
                      .....+.++||||++.+.......+..+|++++|+|+.....-+....+  .+.......|+++++||+|+.+...  ..
T Consensus       104 ~~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~--~l~~~lg~~~iIvvvNKiD~~~~~~~~~~  181 (474)
T PRK05124        104 TEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS--FIATLLGIKHLVVAVNKMDLVDYSEEVFE  181 (474)
T ss_pred             cCCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH--HHHHHhCCCceEEEEEeeccccchhHHHH
Confidence            5667899999999887755444456899999999999875432222111  1122222357899999999864221  11


Q ss_pred             HHH----HHHhh----cCCeEEEecccCCCChHHH
Q 027607          137 KQV----TFHRK----KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       137 ~~~----~~~~~----~~~~~~~~s~~~~~gv~~~  163 (221)
                      +..    .+...    ...+++++|+++|.|+.++
T Consensus       182 ~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        182 RIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             HHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            111    11222    2467999999999999764

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.65  E-value=4.3e-16  Score=134.39  Aligned_cols=143  Identities=18%  Similarity=0.137  Sum_probs=95.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC--C--ccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--K--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~--~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      +-.+|+|+|+.++|||||+++|+.....  .  ...            ...|++.......+..++..+.+|||||+.++
T Consensus         9 ~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~   88 (689)
T TIGR00484         9 RFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDF   88 (689)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcch
Confidence            3459999999999999999998742111  0  011            12355555556666667789999999999887


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC----eEEE
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE  151 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~  151 (221)
                      ...+...++.+|++++|+|+.+....+....| ..+..  .+.|+++++||+|+................+.    ..++
T Consensus        89 ~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~--~~~p~ivviNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip  165 (689)
T TIGR00484        89 TVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR--YEVPRIAFVNKMDKTGANFLRVVNQIKQRLGANAVPIQLP  165 (689)
T ss_pred             hHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceeEEec
Confidence            77777889999999999999886554433323 22322  37899999999998754422222222222222    2466


Q ss_pred             ecccCC
Q 027607          152 ISAKSN  157 (221)
Q Consensus       152 ~s~~~~  157 (221)
                      +|+..+
T Consensus       166 is~~~~  171 (689)
T TIGR00484       166 IGAEDN  171 (689)
T ss_pred             cccCCC
Confidence            776554

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.64  E-value=6.8e-16  Score=110.38  Aligned_cols=117  Identities=16%  Similarity=0.244  Sum_probs=71.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-cCcEEEEEEEecCCccccccccccc---ccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-NCGKIRFYCWDTAGQEKFGGLRDGY---YIHGQ   87 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~D~~g~~~~~~~~~~~---~~~~d   87 (221)
                      ++-.|+++|++|||||+|+.+|..+.....+.+...    .....+ ......+.++|+||+.+.+......   ...+.
T Consensus         2 k~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e~----n~~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k   77 (181)
T PF09439_consen    2 KRPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSMEN----NIAYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAK   77 (181)
T ss_dssp             ---EEEEE-STTSSHHHHHHHHHHSS---B---SSE----EEECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHhcCCcCCeeccccC----CceEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCC
Confidence            456899999999999999999998866544333311    111111 1233468999999999887644443   77899


Q ss_pred             EEEEEEECCC-hhhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcCCc
Q 027607           88 CAIIMFDVTA-RLTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        88 ~~i~v~d~~~-~~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~~~  132 (221)
                      ++|||+|++. .........++..+...    ....|++++.||.|+...
T Consensus        78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A  127 (181)
T PF09439_consen   78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA  127 (181)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred             EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence            9999999974 33455555554444332    257899999999998653

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.64  E-value=1.9e-15  Score=102.11  Aligned_cols=107  Identities=21%  Similarity=0.212  Sum_probs=68.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------cccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH   85 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------~~~~~~~~   85 (221)
                      +|+|+|.+|||||||+|+|+... ........+.+.......+......+.++||||......         .....+..
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~   79 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGKK-LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISK   79 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTST-SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCT
T ss_pred             CEEEECCCCCCHHHHHHHHhccc-cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHH
Confidence            69999999999999999987543 223344445555543322222345567999999643211         11223478


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeC
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNK  126 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK  126 (221)
                      +|++++|+|+.+... .....++..+.   .+.|+++|+||
T Consensus        80 ~d~ii~vv~~~~~~~-~~~~~~~~~l~---~~~~~i~v~NK  116 (116)
T PF01926_consen   80 SDLIIYVVDASNPIT-EDDKNILRELK---NKKPIILVLNK  116 (116)
T ss_dssp             ESEEEEEEETTSHSH-HHHHHHHHHHH---TTSEEEEEEES
T ss_pred             CCEEEEEEECCCCCC-HHHHHHHHHHh---cCCCEEEEEcC
Confidence            999999999877322 22333444442   48999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.64  E-value=2.2e-15  Score=125.41  Aligned_cols=121  Identities=18%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc-CC---c----------------ccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EK---K----------------YEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~---~----------------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~   70 (221)
                      .+..+|+|+|+.|+|||||+++|+.... ..   .                .....|.+.......+..++..+.+||||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            3567999999999999999999874111 00   0                01122344444445566677899999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      |+.++......+++.+|++++|+|+++..... ...++.....  .+.|+++++||+|+.....
T Consensus        88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t~~l~~~~~~--~~iPiiv~iNK~D~~~a~~  148 (526)
T PRK00741         88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQ-TRKLMEVCRL--RDTPIFTFINKLDRDGREP  148 (526)
T ss_pred             CchhhHHHHHHHHHHCCEEEEEEecCCCCCHH-HHHHHHHHHh--cCCCEEEEEECCcccccCH
Confidence            99888877777889999999999998753222 2233333322  3899999999999876443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.63  E-value=6.3e-15  Score=120.82  Aligned_cols=151  Identities=19%  Similarity=0.202  Sum_probs=98.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCc--cCC---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE--FEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~--~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|+.++|||||+.+|+...  ...                           ......|.+.+.....+..+
T Consensus         4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~   83 (446)
T PTZ00141          4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   83 (446)
T ss_pred             CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC
Confidence            3578999999999999999999987621  110                           01112345555555566777


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh---ccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc-
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY---KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR-  132 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~-  132 (221)
                      ...+.++|+||+.++.......+..+|++++|+|+....   .+   ......+.....  .++| +++++||+|.... 
T Consensus        84 ~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~--~gi~~iiv~vNKmD~~~~~  161 (446)
T PTZ00141         84 KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT--LGVKQMIVCINKMDDKTVN  161 (446)
T ss_pred             CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH--cCCCeEEEEEEccccccch
Confidence            789999999999888776677788999999999998753   11   112222222222  2555 6789999995321 


Q ss_pred             ----c---ccHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607          133 ----Q---VKAKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       133 ----~---~~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~  162 (221)
                          .   ...+........     .++++++|+.+|.|+.+
T Consensus       162 ~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        162 YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence                1   111222222222     46799999999999853

>PRK00049 elongation factor Tu; Reviewed

Probab=99.63  E-value=7.5e-15  Score=119.00  Aligned_cols=157  Identities=13%  Similarity=0.045  Sum_probs=102.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccC--------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE--------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      ..+.++|+++|+.++|||||+++|+.....              .......|.+.......+..+...+.++||||+.++
T Consensus         9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f   88 (396)
T PRK00049          9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY   88 (396)
T ss_pred             CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHH
Confidence            467899999999999999999998762110              011124566666666666666778899999998877


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCccccH-----HHHHHHhh-----
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKA-----KQVTFHRK-----  144 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~-----~~~~~~~~-----  144 (221)
                      .......+..+|++++|+|+.....-+ ....+..+..  .+.|.+ +++||+|+.+.....     +...+...     
T Consensus        89 ~~~~~~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~--~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~  165 (396)
T PRK00049         89 VKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQ--VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPG  165 (396)
T ss_pred             HHHHHhhhccCCEEEEEEECCCCCchH-HHHHHHHHHH--cCCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCc
Confidence            665566678999999999998753222 2222333322  267876 589999986422111     11122222     


Q ss_pred             cCCeEEEecccCCC----------ChHHHHHHHHH
Q 027607          145 KNLQYYEISAKSNY----------NFEKPFLYLAR  169 (221)
Q Consensus       145 ~~~~~~~~s~~~~~----------gv~~~~~~l~~  169 (221)
                      ..++++++|+++|.          |+..+++.|..
T Consensus       166 ~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~  200 (396)
T PRK00049        166 DDTPIIRGSALKALEGDDDEEWEKKILELMDAVDS  200 (396)
T ss_pred             cCCcEEEeecccccCCCCcccccccHHHHHHHHHh
Confidence            24678999999875          34455555554

>PLN03126 Elongation factor Tu; Provisional

Probab=99.63  E-value=3e-15  Score=123.19  Aligned_cols=148  Identities=14%  Similarity=0.053  Sum_probs=98.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc------CC--------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF------EK--------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~------~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      ...+.++|+++|+.++|||||+++|+....      ..        ......|.+.+.....+...+..+.++|+||+++
T Consensus        77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~  156 (478)
T PLN03126         77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD  156 (478)
T ss_pred             ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence            467789999999999999999999885211      00        1123345666655555666677899999999988


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccH-----HHHHHHhh----
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKA-----KQVTFHRK----  144 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~-----~~~~~~~~----  144 (221)
                      +.......+..+|++++|+|+.....-+. ..++.....  .++| +++++||+|+.+.....     +...+...    
T Consensus       157 f~~~~~~g~~~aD~ailVVda~~G~~~qt-~e~~~~~~~--~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~  233 (478)
T PLN03126        157 YVKNMITGAAQMDGAILVVSGADGPMPQT-KEHILLAKQ--VGVPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFP  233 (478)
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH--cCCCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCC
Confidence            76666666778999999999987643222 222332222  2677 77899999986522111     12222222    


Q ss_pred             -cCCeEEEecccCCCC
Q 027607          145 -KNLQYYEISAKSNYN  159 (221)
Q Consensus       145 -~~~~~~~~s~~~~~g  159 (221)
                       ..++++++|+.+|.+
T Consensus       234 ~~~~~~vp~Sa~~g~n  249 (478)
T PLN03126        234 GDDIPIISGSALLALE  249 (478)
T ss_pred             cCcceEEEEEcccccc
Confidence             256799999988754

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.62  E-value=3.1e-14  Score=114.71  Aligned_cols=164  Identities=18%  Similarity=0.255  Sum_probs=100.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe-----------------------c-CcEEEEEEEec
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----------------------N-CGKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~-~~~~~i~~~D~   69 (221)
                      ++|+++|.+|||||||+|+|......  ....+++|..+.....                       + .....+++||+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~~~--~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLADVE--IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCccc--ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            68999999999999999997765442  1222333333322211                       1 12367899999


Q ss_pred             CCcc----ccccccccc---cccccEEEEEEECCC---------------hh-hhc----cHHHH---------------
Q 027607           70 AGQE----KFGGLRDGY---YIHGQCAIIMFDVTA---------------RL-TYK----NVPTW---------------  107 (221)
Q Consensus        70 ~g~~----~~~~~~~~~---~~~~d~~i~v~d~~~---------------~~-s~~----~~~~~---------------  107 (221)
                      ||..    ....+...+   ++++|++++|+|+..               +. .++    .+..|               
T Consensus        80 aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~  159 (396)
T PRK09602         80 AGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK  159 (396)
T ss_pred             CCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            9953    233344445   789999999999971               10 000    00000               


Q ss_pred             -------------------------HHH-HHhh----------------------cCCCCEEEEEeCCCcCCccccHHHH
Q 027607          108 -------------------------HRD-LCRV----------------------CENIPIVLCGNKVDVKNRQVKAKQV  139 (221)
Q Consensus       108 -------------------------~~~-~~~~----------------------~~~~p~ivv~nK~D~~~~~~~~~~~  139 (221)
                                               ... +...                      ...+|+++|+||.|.......  ..
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D~~~~~~~--l~  237 (396)
T PRK09602        160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKADLPPAEEN--IE  237 (396)
T ss_pred             HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchhcccchHH--HH
Confidence                                     000 0000                      024799999999997532111  11


Q ss_pred             HHHhhcCCeEEEecccCCCChHH-HHHHHHHHHhCCCCCcccc
Q 027607          140 TFHRKKNLQYYEISAKSNYNFEK-PFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       140 ~~~~~~~~~~~~~s~~~~~gv~~-~~~~l~~~l~~~~~~~~~~  181 (221)
                      .+.......++.+||..+.++.. +.+.+.+.+...+.++..+
T Consensus       238 ~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d  280 (396)
T PRK09602        238 RLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILG  280 (396)
T ss_pred             HHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccc
Confidence            12222355689999999999999 8888888887777666443

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.62  E-value=6.4e-15  Score=118.73  Aligned_cols=159  Identities=16%  Similarity=0.179  Sum_probs=120.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc-------CC------cccCCcceeeeeeEEEec---CcEEEEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-------EK------KYEPTIGVEVHPLDFFTN---CGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-------~~------~~~~~~~~~~~~~~~~~~---~~~~~i~~~D~~g~~~   74 (221)
                      .+--+++|+-+-.-|||||..+|+.-..       ..      ......|.|....+.++-   +..+.+.++||||+.+
T Consensus        58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD  137 (650)
T KOG0462|consen   58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD  137 (650)
T ss_pred             hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence            3445799999999999999999875211       00      112344666666555443   4458999999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH---HHHHHHhhcCCeEEE
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYE  151 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~~  151 (221)
                      |.......+..++++++|+|+....--+.+..++..+..   +..+|.|+||+|++......   ..........-+.+.
T Consensus       138 Fs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~---~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~  214 (650)
T KOG0462|consen  138 FSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA---GLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVIY  214 (650)
T ss_pred             ccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc---CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCCccceEE
Confidence            999999999999999999999988666666665555543   78899999999998755433   333444455567999


Q ss_pred             ecccCCCChHHHHHHHHHHHh
Q 027607          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +||++|.|+.+++++|++.+.
T Consensus       215 vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  215 VSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             EEeccCccHHHHHHHHHhhCC
Confidence            999999999999999999753

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.62  E-value=7.3e-15  Score=125.77  Aligned_cols=152  Identities=19%  Similarity=0.152  Sum_probs=95.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc------------cc-------------------CCcceeeeeeEEEe
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK------------YE-------------------PTIGVEVHPLDFFT   57 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~------------~~-------------------~~~~~~~~~~~~~~   57 (221)
                      ...+.++|+++|++++|||||+++|+.....-.            ..                   ...|.+.......+
T Consensus        20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~   99 (632)
T PRK05506         20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF   99 (632)
T ss_pred             cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence            345679999999999999999999886322100            00                   01233333444445


Q ss_pred             cCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc--ccc
Q 027607           58 NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR--QVK  135 (221)
Q Consensus        58 ~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~  135 (221)
                      ......+.++||||++.+.......+..+|++++|+|+.....-+.... ...+ ......++++++||+|+.+.  ...
T Consensus       100 ~~~~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~-~~~~-~~~~~~~iivvvNK~D~~~~~~~~~  177 (632)
T PRK05506        100 ATPKRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH-SFIA-SLLGIRHVVLAVNKMDLVDYDQEVF  177 (632)
T ss_pred             ccCCceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH-HHHH-HHhCCCeEEEEEEecccccchhHHH
Confidence            5566788999999988765444455788999999999986543222211 1111 22224678899999998641  111


Q ss_pred             HH----HHHHHhhcC---CeEEEecccCCCChHH
Q 027607          136 AK----QVTFHRKKN---LQYYEISAKSNYNFEK  162 (221)
Q Consensus       136 ~~----~~~~~~~~~---~~~~~~s~~~~~gv~~  162 (221)
                      .+    ...+....+   .+++++|+++|.|+.+
T Consensus       178 ~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        178 DEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             HHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            11    112222333   4589999999999874

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.62  E-value=4.6e-15  Score=110.57  Aligned_cols=171  Identities=11%  Similarity=0.176  Sum_probs=112.5

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-------cccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-------FGGLRD   80 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-------~~~~~~   80 (221)
                      ....+.++|+++|.+|+|||||+|+++.+...+...-..+.+... ......+...+.+||+||..+       ++....
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~-~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~  112 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITT-RLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYR  112 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchh-hHHhhccccceEEecCCCcccchhhhHHHHHHHH
Confidence            346788999999999999999999988655433221122211111 111112336789999999654       555667


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---------ccHHHH-----------H
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---------VKAKQV-----------T  140 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---------~~~~~~-----------~  140 (221)
                      .++...|.++++.++.++.---+.+.|..-+ ...-+.++++++|.+|.....         ......           +
T Consensus       113 d~l~~~DLvL~l~~~~draL~~d~~f~~dVi-~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~  191 (296)
T COG3596         113 DYLPKLDLVLWLIKADDRALGTDEDFLRDVI-ILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR  191 (296)
T ss_pred             HHhhhccEEEEeccCCCccccCCHHHHHHHH-HhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            7788999999999999886544444444333 333358999999999974321         111111           1


Q ss_pred             HHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcccc
Q 027607          141 FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       141 ~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~  181 (221)
                      ++.. -.+++.++...+-|++.+...+.+++..+.+.....
T Consensus       192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~  231 (296)
T COG3596         192 LFQE-VKPVVAVSGRLPWGLKELVRALITALPVEARSPLAA  231 (296)
T ss_pred             HHhh-cCCeEEeccccCccHHHHHHHHHHhCcccccchhhh
Confidence            1111 346777888999999999999999887766655433

>TIGR00503 prfC peptide chain release factor 3

Probab=99.61  E-value=7.2e-15  Score=122.44  Aligned_cols=119  Identities=18%  Similarity=0.166  Sum_probs=84.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc-CccCC-------------------cccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT-GEFEK-------------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~-~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~   70 (221)
                      .+..+|+|+|++|+|||||+++|+. ++...                   ......|.+.......+..++..+.+||||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            4567999999999999999999864 21111                   011122445555556667778899999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                      |+..+.......++.+|++++|+|+++... .....++.....  .+.|+++++||+|+...
T Consensus        89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~--~~~PiivviNKiD~~~~  147 (527)
T TIGR00503        89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL--RDTPIFTFMNKLDRDIR  147 (527)
T ss_pred             ChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh--cCCCEEEEEECccccCC
Confidence            998877766677889999999999987521 112233333322  37899999999998643

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>PLN03127 Elongation factor Tu; Provisional

Probab=99.60  E-value=2.7e-14  Score=116.98  Aligned_cols=158  Identities=15%  Similarity=0.064  Sum_probs=99.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC-----ccC---------CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG-----EFE---------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~-----~~~---------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      +.+.++|+++|+.++|||||+++|..-     ...         .......|.|.+.....+...+..+.++||||+..+
T Consensus        58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~f  137 (447)
T PLN03127         58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHADY  137 (447)
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccch
Confidence            567899999999999999999997521     100         011223566677666677777778999999998776


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccccHH-----HHHHHhh-----
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQVKAK-----QVTFHRK-----  144 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~~~~-----~~~~~~~-----  144 (221)
                      .......+..+|++++|+|+.....-+. ...+..+..  .+.| +++++||+|+.+.....+     ...+...     
T Consensus       138 ~~~~~~g~~~aD~allVVda~~g~~~qt-~e~l~~~~~--~gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~  214 (447)
T PLN03127        138 VKNMITGAAQMDGGILVVSAPDGPMPQT-KEHILLARQ--VGVPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPG  214 (447)
T ss_pred             HHHHHHHHhhCCEEEEEEECCCCCchhH-HHHHHHHHH--cCCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            5544445567999999999986532221 222222222  2678 478899999864221111     1111111     


Q ss_pred             cCCeEEEeccc---CCCC-------hHHHHHHHHHH
Q 027607          145 KNLQYYEISAK---SNYN-------FEKPFLYLARK  170 (221)
Q Consensus       145 ~~~~~~~~s~~---~~~g-------v~~~~~~l~~~  170 (221)
                      ..++++++|+.   +|.|       +..+++.|...
T Consensus       215 ~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~  250 (447)
T PLN03127        215 DEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEY  250 (447)
T ss_pred             CcceEEEeccceeecCCCcccccchHHHHHHHHHHh
Confidence            13678888876   4444       45666665553

>PRK12739 elongation factor G; Reviewed

Probab=99.58  E-value=2.4e-14  Score=123.64  Aligned_cols=117  Identities=18%  Similarity=0.121  Sum_probs=83.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC----Cccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE----KKYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      +-.+|+|+|+.++|||||+++|+.....    ..+.            ...|++.......+..++..+.++||||+..+
T Consensus         7 ~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~f   86 (691)
T PRK12739          7 KTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVDF   86 (691)
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHHH
Confidence            4568999999999999999998742110    0011            13455555555566667789999999998877


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      ...+...++.+|++++|+|+......+... .+..+..  .++|.++++||+|+..
T Consensus        87 ~~e~~~al~~~D~~ilVvDa~~g~~~qt~~-i~~~~~~--~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         87 TIEVERSLRVLDGAVAVFDAVSGVEPQSET-VWRQADK--YGVPRIVFVNKMDRIG  139 (691)
T ss_pred             HHHHHHHHHHhCeEEEEEeCCCCCCHHHHH-HHHHHHH--cCCCEEEEEECCCCCC
Confidence            777777889999999999998764333222 2222222  3789999999999764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.57  E-value=6.8e-14  Score=106.48  Aligned_cols=152  Identities=16%  Similarity=0.091  Sum_probs=104.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-------ccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-------GLRDGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-------~~~~~~~~~   85 (221)
                      .-+++++|.|++|||||+++|. +.. +.......+|.......+..++..+++.|+||.-.-.       ...-...++
T Consensus        63 da~v~lVGfPsvGKStLL~~LT-nt~-seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~  140 (365)
T COG1163          63 DATVALVGFPSVGKSTLLNKLT-NTK-SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARN  140 (365)
T ss_pred             CeEEEEEcCCCccHHHHHHHHh-CCC-ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence            3689999999999999999955 333 3345556677777888888888999999999843211       233456889


Q ss_pred             ccEEEEEEECCChhh-hccHHH--------------------------------------------HHHHHHhhc-----
Q 027607           86 GQCAIIMFDVTARLT-YKNVPT--------------------------------------------WHRDLCRVC-----  115 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s-~~~~~~--------------------------------------------~~~~~~~~~-----  115 (221)
                      +|.+++|+|+..... .+.+..                                            .+.++.-++     
T Consensus       141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I  220 (365)
T COG1163         141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI  220 (365)
T ss_pred             CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence            999999999985433 111111                                            111111110     


Q ss_pred             -----------------CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          116 -----------------ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       116 -----------------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                                       .-+|.++|.||.|+....   +.......  ..++.+||..+.|++++.+.|.+.+
T Consensus       221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e---~~~~l~~~--~~~v~isa~~~~nld~L~e~i~~~L  288 (365)
T COG1163         221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLE---ELERLARK--PNSVPISAKKGINLDELKERIWDVL  288 (365)
T ss_pred             ecCCcHHHHHHHHhhcceeeeeEEEEecccccCHH---HHHHHHhc--cceEEEecccCCCHHHHHHHHHHhh
Confidence                             124999999999987622   22222222  2889999999999999999999876

>PRK00007 elongation factor G; Reviewed

Probab=99.57  E-value=9.5e-15  Score=126.06  Aligned_cols=150  Identities=17%  Similarity=0.138  Sum_probs=97.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc--CccCC--ccc------------CCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--KYE------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~--~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      +-.+|+|+|..++|||||+++|+.  +....  .+.            ...|++.+.....+.+.+..+.++||||+.++
T Consensus         9 ~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~f   88 (693)
T PRK00007          9 RYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVDF   88 (693)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHHH
Confidence            346999999999999999999874  22111  011            24455666655666666789999999998776


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC----eEEE
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL----QYYE  151 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~----~~~~  151 (221)
                      .......++.+|++++|+|+......+....|. .+..  .+.|.++++||+|+.+..............+.    ..++
T Consensus        89 ~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~--~~~p~iv~vNK~D~~~~~~~~~~~~i~~~l~~~~~~~~ip  165 (693)
T PRK00007         89 TIEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK--YKVPRIAFVNKMDRTGADFYRVVEQIKDRLGANPVPIQLP  165 (693)
T ss_pred             HHHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH--cCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCeeeEEec
Confidence            655566688899999999998765444433332 2222  27899999999998764433222222223222    3466


Q ss_pred             ecccCC-CChHHHH
Q 027607          152 ISAKSN-YNFEKPF  164 (221)
Q Consensus       152 ~s~~~~-~gv~~~~  164 (221)
                      +|+..+ .|+-+++
T Consensus       166 isa~~~f~g~~d~~  179 (693)
T PRK00007        166 IGAEDDFKGVVDLV  179 (693)
T ss_pred             CccCCcceEEEEcc
Confidence            777665 3444433

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.57  E-value=5.1e-14  Score=107.93  Aligned_cols=158  Identities=16%  Similarity=0.137  Sum_probs=103.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCcccc----cccccccc---cccc
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF----GGLRDGYY---IHGQ   87 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~----~~~~~~~~---~~~d   87 (221)
                      |+++|.|++|||||++++...+  +.....+-+|..+.-..+. .....|.+-|+||.-+-    ..+-..|+   ..+.
T Consensus       162 VGLVG~PNaGKSTlls~vS~Ak--PKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~  239 (369)
T COG0536         162 VGLVGLPNAGKSTLLSAVSAAK--PKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTR  239 (369)
T ss_pred             cccccCCCCcHHHHHHHHhhcC--CcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhhh
Confidence            6899999999999999866543  3344455555555543333 34456899999995332    22333343   4578


Q ss_pred             EEEEEEECCChhh---hccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHH--HHHHHhhcCCeEE-EecccCCC
Q 027607           88 CAIIMFDVTARLT---YKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAK--QVTFHRKKNLQYY-EISAKSNY  158 (221)
Q Consensus        88 ~~i~v~d~~~~~s---~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~~~~~~-~~s~~~~~  158 (221)
                      +++.|+|++..+.   .++......++..+.   .++|.++|+||+|+.......+  ...+....++... .+|+.++.
T Consensus       240 vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~  319 (369)
T COG0536         240 VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTRE  319 (369)
T ss_pred             eeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhccc
Confidence            8999999986543   444445555555543   5899999999999544332222  2233333343322 29999999


Q ss_pred             ChHHHHHHHHHHHhCCC
Q 027607          159 NFEKPFLYLARKLAGDP  175 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~  175 (221)
                      |++.+...+.+.+...+
T Consensus       320 g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         320 GLDELLRALAELLEETK  336 (369)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999988776654

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.57  E-value=1.1e-13  Score=111.88  Aligned_cols=153  Identities=16%  Similarity=0.190  Sum_probs=105.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC---cEEEEEEEecCCccccccccccccccccE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC---GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +.+-|+++|+-..|||||+..+-.......-  .-|.|.+..-+.+..   ..-.+.|+||||++.|..++..-..-+|.
T Consensus         4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~E--aGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDI   81 (509)
T COG0532           4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGE--AGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDI   81 (509)
T ss_pred             CCCEEEEeCcccCCccchhhhHhcCcccccc--CCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccE
Confidence            4567999999999999999986655443322  223333333333322   23478999999999999999888899999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHH--------hhcCCeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH--------RKKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~g  159 (221)
                      +++|+++++.---+.+    ..+... ..+.|++++.||+|..+........++.        +.....++++||++|.|
T Consensus        82 aILVVa~dDGv~pQTi----EAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~G  157 (509)
T COG0532          82 AILVVAADDGVMPQTI----EAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEG  157 (509)
T ss_pred             EEEEEEccCCcchhHH----HHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCC
Confidence            9999999986422222    222221 2499999999999998543322222111        11225799999999999


Q ss_pred             hHHHHHHHHHH
Q 027607          160 FEKPFLYLARK  170 (221)
Q Consensus       160 v~~~~~~l~~~  170 (221)
                      +.+++..|+-.
T Consensus       158 i~eLL~~ill~  168 (509)
T COG0532         158 IDELLELILLL  168 (509)
T ss_pred             HHHHHHHHHHH
Confidence            99999877653

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.56  E-value=4.8e-14  Score=115.40  Aligned_cols=161  Identities=14%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--Cccee------eeee-----------EEEecC----------
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--TIGVE------VHPL-----------DFFTNC----------   59 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~~~~~------~~~~-----------~~~~~~----------   59 (221)
                      .-++.++|+++|+-..|||||+++|.. ........  ..|.|      ....           ......          
T Consensus        30 ~~~~~~~ig~~GHVDhGKTtLv~aLtg-~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (460)
T PTZ00327         30 SRQATINIGTIGHVAHGKSTVVKALSG-VKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG  108 (460)
T ss_pred             cCCCcEEEEEEccCCCCHHHHHHHHhC-CCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence            346789999999999999999999663 22111110  11111      1000           000000          


Q ss_pred             ------cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           60 ------GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        60 ------~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                            -...+.++|+||++.+.......+..+|++++|+|+............+. +.....-.++++|+||+|+.+..
T Consensus       109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~-i~~~lgi~~iIVvlNKiDlv~~~  187 (460)
T PTZ00327        109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLA-AVEIMKLKHIIILQNKIDLVKEA  187 (460)
T ss_pred             ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHH-HHHHcCCCcEEEEEecccccCHH
Confidence                  02468999999998876655566778999999999987421111112221 22222345789999999987533


Q ss_pred             ccHHHH----HHHh---hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          134 VKAKQV----TFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       134 ~~~~~~----~~~~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      ...+..    .+..   ....+++++|+++|.|++.+++.|...+
T Consensus       188 ~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        188 QAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            222222    1111   1367899999999999999999888744

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.55  E-value=8.3e-14  Score=110.78  Aligned_cols=156  Identities=16%  Similarity=0.155  Sum_probs=118.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCcc-------------CCcccCCcceeeeeeEEEe-----cCcEEEEEEEecCCcccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEF-------------EKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~~~   75 (221)
                      -+++++-+-.-|||||..+++....             ........|.|.....+..     ++..+.++++||||+-+|
T Consensus        10 RNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF   89 (603)
T COG0481          10 RNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF   89 (603)
T ss_pred             cceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce
Confidence            4688999999999999999875211             1112223455555444332     346789999999999999


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEEEe
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYYEI  152 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~~~  152 (221)
                      ..-....+..+.+.++|+|++..---+.+...+..+..   +..++.|+||+|++......-..+...-.|+   ..+.+
T Consensus        90 sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~---~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~dav~~  166 (603)
T COG0481          90 SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN---NLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASDAVLV  166 (603)
T ss_pred             EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc---CcEEEEeeecccCCCCCHHHHHHHHHHHhCCCcchheeE
Confidence            98888889999999999999988777777777766655   7889999999999876655544444444454   47889


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q 027607          153 SAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ||++|.|+.++++.|.+.+.
T Consensus       167 SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         167 SAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             ecccCCCHHHHHHHHHhhCC
Confidence            99999999999999998753

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.54  E-value=9.6e-14  Score=108.97  Aligned_cols=153  Identities=20%  Similarity=0.214  Sum_probs=103.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc-----------------------------CCcccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-----------------------------EKKYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++++|+|+..+|||||+-+|+....                             ........|.|.+.....+...
T Consensus         4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~   83 (428)
T COG5256           4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD   83 (428)
T ss_pred             CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence            46889999999999999999999876111                             0011123355666666667777


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh--ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV  134 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~  134 (221)
                      ...+.++|+||+..+-..+-.-..++|+.|+|+|+++.+   .|  .........+.....-..+|+++||+|..+- +.
T Consensus        84 k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~  163 (428)
T COG5256          84 KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEE  163 (428)
T ss_pred             CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHH
Confidence            788999999998877666666778999999999999874   11  2222333333333345677889999998651 11


Q ss_pred             -----cHHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607          135 -----KAKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       135 -----~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~  162 (221)
                           ..+...+....     .++|+++|+..|.|+.+
T Consensus       164 rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         164 RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence                 11122222222     36699999999999854

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.53  E-value=2.3e-13  Score=109.93  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=108.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ..++..-|.|+|+-.-|||||+..|-+..........+.--...+.+.+. ++..++|.||||+..|..++..-..-.|.
T Consensus       149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~vtDI  227 (683)
T KOG1145|consen  149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGANVTDI  227 (683)
T ss_pred             cCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCccccE
Confidence            34466789999999999999999866544332222222222233444555 44789999999999999999988889999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccccHHHHHHH------hhc--CCeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQVKAKQVTFH------RKK--NLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~--~~~~~~~s~~~~~g  159 (221)
                      +++|+.+.|.---+.    .+.+... ..+.|+++.+||+|.++.....-..++.      ..+  ...++++|+++|.|
T Consensus       228 vVLVVAadDGVmpQT----~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~n  303 (683)
T KOG1145|consen  228 VVLVVAADDGVMPQT----LEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGEN  303 (683)
T ss_pred             EEEEEEccCCccHhH----HHHHHHHHhcCCCEEEEEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCC
Confidence            999999998642222    2333222 2589999999999987644332222221      112  35689999999999


Q ss_pred             hHHHHHHHHH
Q 027607          160 FEKPFLYLAR  169 (221)
Q Consensus       160 v~~~~~~l~~  169 (221)
                      +..+-+.+.-
T Consensus       304 l~~L~eaill  313 (683)
T KOG1145|consen  304 LDLLEEAILL  313 (683)
T ss_pred             hHHHHHHHHH
Confidence            9998877665

>PRK09866 hypothetical protein; Provisional

Probab=99.51  E-value=9.8e-13  Score=109.29  Aligned_cols=107  Identities=16%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             EEEEEEecCCcccc-----ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--
Q 027607           62 IRFYCWDTAGQEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--  134 (221)
Q Consensus        62 ~~i~~~D~~g~~~~-----~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  134 (221)
                      ..+.++||||....     .......+..+|++++|+|++...+..+ ......+.......|+++|+||+|..++..  
T Consensus       230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~~PVILVVNKIDl~dreedd  308 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVGQSVPLYVLVNKFDQQDRNSDD  308 (741)
T ss_pred             CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence            35788999997542     1123446889999999999987544333 123333333322369999999999864222  


Q ss_pred             cHHHHHHHh----hc---CCeEEEecccCCCChHHHHHHHHH
Q 027607          135 KAKQVTFHR----KK---NLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       135 ~~~~~~~~~----~~---~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ......+..    ..   ...++++||+.|.|+..++..|..
T Consensus       309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            222222211    11   236899999999999998776655

>PRK12740 elongation factor G; Reviewed

Probab=99.49  E-value=2.4e-13  Score=117.42  Aligned_cols=110  Identities=20%  Similarity=0.256  Sum_probs=76.2

Q ss_pred             EcCCCCcHHHHHHHHhcCccC--C--cc------------cCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccc
Q 027607           19 VGDGGTGKTTFVKRHLTGEFE--K--KY------------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY   82 (221)
Q Consensus        19 ~G~~gsGKStL~~~l~~~~~~--~--~~------------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~   82 (221)
                      +|+.|+|||||+++|+.....  .  ..            ....|.+.......+..++..+.+|||||+..+...+...
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~   80 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA   80 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence            699999999999998643211  0  00            0012344444444555567899999999998776667778


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      +..+|++++|+|++..........| ..+..  .+.|+++|+||+|...
T Consensus        81 l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~--~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         81 LRVLDGAVVVVCAVGGVEPQTETVW-RQAEK--YGVPRIIFVNKMDRAG  126 (668)
T ss_pred             HHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH--cCCCEEEEEECCCCCC
Confidence            8999999999999886554433323 22222  3789999999999753

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=2.2e-13  Score=97.71  Aligned_cols=112  Identities=17%  Similarity=0.251  Sum_probs=77.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc---cccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI---HGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~---~~d~~i   90 (221)
                      -.|.++|+.+||||+|+-+|..+.+...+.     +..+....+..+.-.+.++|.||+.+.+.....++.   .+-+++
T Consensus        39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiV  113 (238)
T KOG0090|consen   39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIV  113 (238)
T ss_pred             CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEeecCcceEEEeCCCcHHHHHHHHHHccccccceeEE
Confidence            479999999999999999988885544322     223333333333445899999999988877777766   689999


Q ss_pred             EEEECCCh-hhhccHHHHHHHHHhh----cCCCCEEEEEeCCCcC
Q 027607           91 IMFDVTAR-LTYKNVPTWHRDLCRV----CENIPIVLCGNKVDVK  130 (221)
Q Consensus        91 ~v~d~~~~-~s~~~~~~~~~~~~~~----~~~~p~ivv~nK~D~~  130 (221)
                      ||+|+..- ....++..++..+...    ....|++++.||.|+.
T Consensus       114 FVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~  158 (238)
T KOG0090|consen  114 FVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLF  158 (238)
T ss_pred             EEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhh
Confidence            99998642 2233444444443332    2478999999999973

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.47  E-value=2.6e-13  Score=117.57  Aligned_cols=117  Identities=22%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC-----------Ccc-------cCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-----------KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~-----------~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~   73 (221)
                      +-.+|+++|+.++|||||+++|+.....           ..+       ..+...........+.+.++.+.+|||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            4579999999999999999998752110           000       0122111222223356778899999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      ++.......++.+|++++|+|+......+....|.. ...  .+.|.++++||+|...
T Consensus        98 ~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~-~~~--~~~p~ivviNKiD~~~  152 (720)
T TIGR00490        98 DFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQ-ALK--ENVKPVLFINKVDRLI  152 (720)
T ss_pred             ccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHH-HHH--cCCCEEEEEEChhccc
Confidence            887777788999999999999987643333222322 212  3678899999999753

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.45  E-value=1e-12  Score=97.96  Aligned_cols=111  Identities=15%  Similarity=0.220  Sum_probs=67.4

Q ss_pred             EEEEEEecCCcccccc-cccc-----cccc--ccEEEEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCC
Q 027607           62 IRFYCWDTAGQEKFGG-LRDG-----YYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD  128 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~-~~~~-----~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D  128 (221)
                      ....++||||+-+.-. ....     .+..  .-++++++|.....+  . ..|...+...+     .+.|++++.||+|
T Consensus       116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~--p-~tFMSNMlYAcSilyktklp~ivvfNK~D  192 (366)
T KOG1532|consen  116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTS--P-TTFMSNMLYACSILYKTKLPFIVVFNKTD  192 (366)
T ss_pred             cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCC--c-hhHHHHHHHHHHHHHhccCCeEEEEeccc
Confidence            4578999999754211 1111     1222  345666777643321  1 23333333222     5899999999999


Q ss_pred             cCCccccHHHH------HHHh----------------------hcCCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          129 VKNRQVKAKQV------TFHR----------------------KKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       129 ~~~~~~~~~~~------~~~~----------------------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      +.+.....+..      +.+.                      ..++..+.+|+.+|.|.+++|..+...+-+..
T Consensus       193 v~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~  267 (366)
T KOG1532|consen  193 VSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYE  267 (366)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHH
Confidence            98765433221      1111                      12467888999999999999999988775543

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.44  E-value=1.4e-12  Score=98.95  Aligned_cols=120  Identities=8%  Similarity=0.019  Sum_probs=71.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---c-------
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---L-------   78 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~-------   78 (221)
                      .....++|+|+|.+|||||||+|++++..... .....+.+.....+.....+..+.+|||||......   .       
T Consensus        27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~-v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~  105 (249)
T cd01853          27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAA-TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS  105 (249)
T ss_pred             hccCCeEEEEECCCCCcHHHHHHHHhCCCCcc-cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence            34567999999999999999999977654322 122222333333333333456899999999654421   0       


Q ss_pred             cccccc--cccEEEEEEECCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCcC
Q 027607           79 RDGYYI--HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (221)
Q Consensus        79 ~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~D~~  130 (221)
                      ...++.  ..+++++|..++... +... ...++.+.....   -.++++|.||+|..
T Consensus       106 I~~~l~~~~idvIL~V~rlD~~r-~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~  162 (249)
T cd01853         106 IKRYLKKKTPDVVLYVDRLDMYR-RDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASS  162 (249)
T ss_pred             HHHHHhccCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence            112232  467788876665432 2111 233333333221   35799999999974

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.44  E-value=1.3e-12  Score=100.81  Aligned_cols=120  Identities=13%  Similarity=0.132  Sum_probs=71.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-------cc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-------DG   81 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~-------~~   81 (221)
                      .+...++|+++|.+|+||||++|++++... .......+.+...........+..+.+|||||........       ..
T Consensus        34 ~~~~~~rIllvGktGVGKSSliNsIlG~~v-~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~  112 (313)
T TIGR00991        34 EDVSSLTILVMGKGGVGKSSTVNSIIGERI-ATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKR  112 (313)
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhCCCc-ccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence            457889999999999999999999885543 2222222222222222222346789999999975432211       11


Q ss_pred             cc--ccccEEEEEEECCChhhhccH-HHHHHHHHhhc---CCCCEEEEEeCCCcC
Q 027607           82 YY--IHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVC---ENIPIVLCGNKVDVK  130 (221)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~---~~~p~ivv~nK~D~~  130 (221)
                      ++  ...|++++|..++.. .+... ...+..+....   --.++++++|+.|..
T Consensus       113 ~l~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~  166 (313)
T TIGR00991       113 FLLGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS  166 (313)
T ss_pred             HhhcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence            12  257899999665432 12211 22333333322   246789999999964

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.42  E-value=4.3e-13  Score=100.44  Aligned_cols=69  Identities=22%  Similarity=0.271  Sum_probs=55.0

Q ss_pred             HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          137 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       137 ~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      ++++........-..+..++|...+.+|  ||++++++|+++++|||..+     +|+..+..+.+.+.+++.++.
T Consensus       122 ~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~--lARAL~~~p~lllLDEP~~g-----vD~~~~~~i~~lL~~l~~eg~  190 (254)
T COG1121         122 EALERVGMEDLRDRQIGELSGGQKQRVL--LARALAQNPDLLLLDEPFTG-----VDVAGQKEIYDLLKELRQEGK  190 (254)
T ss_pred             HHHHHcCchhhhCCcccccCcHHHHHHH--HHHHhccCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCCC
Confidence            3333333333444557777777777766  99999999999999999999     999999999999999998753

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.42  E-value=2.3e-12  Score=96.00  Aligned_cols=163  Identities=12%  Similarity=0.071  Sum_probs=90.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc-----------ccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR-----------DGY   82 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~-----------~~~   82 (221)
                      ++|+++|.+||||||++|.+++.............+...........+..+.++||||..+.....           ...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~   80 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLC   80 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhc
Confidence            689999999999999999988766544332222233222222223345788999999953322111           111


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccH---------HHHHHHhhcCCeEE
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKA---------KQVTFHRKKNLQYY  150 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~  150 (221)
                      ....+++++|+.+. ..+-.. ...+..+....   --..++||+|..|........         ....+....+-.|.
T Consensus        81 ~~g~ha~llVi~~~-r~t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLG-RFTEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETT-B-SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecC-cchHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            34679999999988 322222 12222222221   135688899988864432211         12234444555666


Q ss_pred             Eeccc------CCCChHHHHHHHHHHHhCCCCCc
Q 027607          151 EISAK------SNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       151 ~~s~~------~~~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      ..+..      ....+.+++..|-+.+..+....
T Consensus       159 ~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~  192 (212)
T PF04548_consen  159 VFNNKTKDKEKDESQVSELLEKIEEMVQENGGQY  192 (212)
T ss_dssp             ECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHHcCCCC
Confidence            66554      34577888888888887776444

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.42  E-value=5.7e-13  Score=87.49  Aligned_cols=136  Identities=19%  Similarity=0.125  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc----ccccccEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG----YYIHGQCAI   90 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~----~~~~~d~~i   90 (221)
                      |++++|..|+|||||++++.+...  .+..|..+++..       .    ..+||||.-..+..+.+    ....+|+++
T Consensus         3 ri~~vG~~gcGKTtL~q~L~G~~~--lykKTQAve~~d-------~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~   69 (148)
T COG4917           3 RIAFVGQVGCGKTTLFQSLYGNDT--LYKKTQAVEFND-------K----GDIDTPGEYFEHPRWYHALITTLQDADVII   69 (148)
T ss_pred             eeEEecccccCchhHHHHhhcchh--hhcccceeeccC-------c----cccCCchhhhhhhHHHHHHHHHhhccceee
Confidence            799999999999999999543322  222233222211       1    24699995433333322    246789999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC-CeEEEecccCCCChHHHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +|-.++++++.-...     +.. ...+|+|-|++|.|++..........+..+.| -++|.+|+.++.|+++++..|..
T Consensus        70 ~v~~and~~s~f~p~-----f~~-~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          70 YVHAANDPESRFPPG-----FLD-IGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             eeecccCccccCCcc-----ccc-ccccceEEEEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            999999986532211     111 12567999999999985433333344444444 46899999999999999988765

>PRK13768 GTPase; Provisional

Probab=99.41  E-value=1.4e-12  Score=99.58  Aligned_cols=113  Identities=13%  Similarity=0.167  Sum_probs=71.3

Q ss_pred             EEEEEecCCcccc---ccccccccc---c--ccEEEEEEECCChhhhccHH--HHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           63 RFYCWDTAGQEKF---GGLRDGYYI---H--GQCAIIMFDVTARLTYKNVP--TWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        63 ~i~~~D~~g~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                      .+.+||+||+.+.   +..+..+++   .  .+++++|+|+.......+..  .|+........+.|+++|+||+|+...
T Consensus        98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~  177 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE  177 (253)
T ss_pred             CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence            5899999997553   233322222   2  78999999997644332221  222222212248999999999998654


Q ss_pred             cccHHHHHH----------------------------HhhcC--CeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          133 QVKAKQVTF----------------------------HRKKN--LQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       133 ~~~~~~~~~----------------------------~~~~~--~~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      ....+....                            ....+  .+++++|+.++.|++++..+|.+.+....
T Consensus       178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~~~~  250 (253)
T PRK13768        178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFCGGE  250 (253)
T ss_pred             hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcCCCC
Confidence            322221111                            11223  57899999999999999999998775543

>cd00066 G-alpha G protein alpha subunit

Probab=99.41  E-value=5.5e-12  Score=99.39  Aligned_cols=72  Identities=17%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             CcEEEEEEEecCCccccccccccccccccEEEEEEECCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027607           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNK  126 (221)
Q Consensus        59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK  126 (221)
                      .++..+.+||++|+...+..|..++.+++++++|+|+++-          ..+......+..+...  ..+.|+++++||
T Consensus       158 ~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK  237 (317)
T cd00066         158 IKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNK  237 (317)
T ss_pred             ecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccC
Confidence            3567899999999999999999999999999999999873          2233322333333222  258999999999


Q ss_pred             CCcC
Q 027607          127 VDVK  130 (221)
Q Consensus       127 ~D~~  130 (221)
                      .|+-
T Consensus       238 ~D~f  241 (317)
T cd00066         238 KDLF  241 (317)
T ss_pred             hHHH
Confidence            9963

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>smart00275 G_alpha G protein alpha subunit

Probab=99.39  E-value=8.2e-13  Score=104.87  Aligned_cols=71  Identities=18%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCCh----------hhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR----------LTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~  127 (221)
                      ++..+.+||++|+...+..|..++.+++++++|+|+++-          ..+......+..+...  ..+.|+++++||.
T Consensus       182 ~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~  261 (342)
T smart00275      182 KKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKI  261 (342)
T ss_pred             CCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecH
Confidence            456789999999999999999999999999999999963          2333333333333332  2578999999999


Q ss_pred             CcC
Q 027607          128 DVK  130 (221)
Q Consensus       128 D~~  130 (221)
                      |+-
T Consensus       262 D~~  264 (342)
T smart00275      262 DLF  264 (342)
T ss_pred             HhH
Confidence            963

Subunit of G proteins that contains the guanine nucleotide binding site

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.38  E-value=1.2e-12  Score=111.53  Aligned_cols=136  Identities=17%  Similarity=0.101  Sum_probs=101.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCc-EEEEEEEecCCcc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~   73 (221)
                      .+--+|+|+|+-.+|||||..+++......                ......|.|......++.+. .+.++++||||+-
T Consensus         8 ~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHV   87 (697)
T COG0480           8 ERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHV   87 (697)
T ss_pred             ccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCcc
Confidence            345789999999999999999988632211                11123356666666677777 4999999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY  149 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~  149 (221)
                      ++.......++-.|++++|+|+...-..+.-..|.+....   ++|.++++||+|........-........+...
T Consensus        88 DFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~---~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~  160 (697)
T COG0480          88 DFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKY---GVPRILFVNKMDRLGADFYLVVEQLKERLGANP  160 (697)
T ss_pred             ccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhc---CCCeEEEEECccccccChhhhHHHHHHHhCCCc
Confidence            9999999999999999999999988766666667665544   899999999999876555444444444444433

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.36  E-value=2.4e-11  Score=96.73  Aligned_cols=156  Identities=16%  Similarity=0.198  Sum_probs=110.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC--ccC------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTG--EFE------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~--~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      --+|+|+-+-.-|||||+..|+..  .|.            .......|.|.-.+...+.+++.++.|+||||+.+|..-
T Consensus         5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGE   84 (603)
T COG1217           5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGE   84 (603)
T ss_pred             cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccch
Confidence            357999999999999999998862  221            112234466666666677788899999999999999999


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---HHHHHHHh-------hcCCe
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---AKQVTFHR-------KKNLQ  148 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---~~~~~~~~-------~~~~~  148 (221)
                      ....+.-.|++++++|+.+..--+ .+..+.....  .+.+-|+|+||+|.+..+..   .+.+.+..       +..++
T Consensus        85 VERvl~MVDgvlLlVDA~EGpMPQ-TrFVlkKAl~--~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFP  161 (603)
T COG1217          85 VERVLSMVDGVLLLVDASEGPMPQ-TRFVLKKALA--LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFP  161 (603)
T ss_pred             hhhhhhhcceEEEEEEcccCCCCc-hhhhHHHHHH--cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCc
Confidence            999999999999999998764222 2222222222  26777889999999765433   23333322       34577


Q ss_pred             EEEecccCCC----------ChHHHHHHHHHHH
Q 027607          149 YYEISAKSNY----------NFEKPFLYLARKL  171 (221)
Q Consensus       149 ~~~~s~~~~~----------gv~~~~~~l~~~l  171 (221)
                      ++..|+..|.          ++..+|+.|.+.+
T Consensus       162 ivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         162 IVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             EEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            8888877553          5577787777753

>cd01882 BMS1 Bms1

Probab=99.35  E-value=2e-11  Score=91.83  Aligned_cols=141  Identities=13%  Similarity=0.168  Sum_probs=83.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+...|+++|++|+|||||+++++............|.    ... ....+..+.++||||.-  .. .......+|+
T Consensus        35 ~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~----i~i-~~~~~~~i~~vDtPg~~--~~-~l~~ak~aDv  106 (225)
T cd01882          35 EEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP----ITV-VTGKKRRLTFIECPNDI--NA-MIDIAKVADL  106 (225)
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc----EEE-EecCCceEEEEeCCchH--HH-HHHHHHhcCE
Confidence            3566788999999999999999987654222222222221    111 12245678899999853  11 1234578999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCcCCccc-cHHH---H-H-HH--hhcCCeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNRQV-KAKQ---V-T-FH--RKKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~~~~~~-~~~~---~-~-~~--~~~~~~~~~~s~~~~~g  159 (221)
                      +++++|++....... ..++..+...  +.|. ++|+||.|+.+... ..+.   + . +.  ...+.+++.+|+++...
T Consensus       107 VllviDa~~~~~~~~-~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~~  183 (225)
T cd01882         107 VLLLIDASFGFEMET-FEFLNILQVH--GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHGR  183 (225)
T ss_pred             EEEEEecCcCCCHHH-HHHHHHHHHc--CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCCC
Confidence            999999986543222 1223333222  5675 45999999853221 1111   1 1 11  11246799999988754


Q ss_pred             h
Q 027607          160 F  160 (221)
Q Consensus       160 v  160 (221)
                      +
T Consensus       184 ~  184 (225)
T cd01882         184 Y  184 (225)
T ss_pred             C
Confidence            4

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.35  E-value=2.1e-11  Score=89.77  Aligned_cols=98  Identities=11%  Similarity=0.078  Sum_probs=60.6

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCE--EEEEeCCCcCCccc--cHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI--VLCGNKVDVKNRQV--KAK  137 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~--ivv~nK~D~~~~~~--~~~  137 (221)
                      ....++++.|..-..... .  .-++.++.|+|+.+......  .+.       .+...  ++++||+|+.+...  ...
T Consensus        92 ~D~iiIEt~G~~l~~~~~-~--~l~~~~i~vvD~~~~~~~~~--~~~-------~qi~~ad~~~~~k~d~~~~~~~~~~~  159 (199)
T TIGR00101        92 LEMVFIESGGDNLSATFS-P--ELADLTIFVIDVAAGDKIPR--KGG-------PGITRSDLLVINKIDLAPMVGADLGV  159 (199)
T ss_pred             CCEEEEECCCCCcccccc-h--hhhCcEEEEEEcchhhhhhh--hhH-------hHhhhccEEEEEhhhccccccccHHH
Confidence            345567777742222221 1  12578999999987655321  111       13333  88999999974211  111


Q ss_pred             HHHHHh--hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          138 QVTFHR--KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       138 ~~~~~~--~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      ..+...  ..+.+++++|+++|.|+.++|++|.+.+
T Consensus       160 ~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~  195 (199)
T TIGR00101       160 MERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYA  195 (199)
T ss_pred             HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            111222  3467899999999999999999999754

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.35  E-value=2.4e-12  Score=113.26  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=80.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC--Ccc------------cCCcceeeeeeE--EEe--------------cCcE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKY------------EPTIGVEVHPLD--FFT--------------NCGK   61 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~~~------------~~~~~~~~~~~~--~~~--------------~~~~   61 (221)
                      +-.+|+|+|+.++|||||+.+|+.....  ...            ....|.+.....  ...              ...+
T Consensus        18 ~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (843)
T PLN00116         18 NIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE   97 (843)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence            4569999999999999999998854321  000            001122222111  111              1236


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      ..+.++||||+.++.......++.+|++++|+|+......+....|.... .  .+.|+++++||+|..
T Consensus        98 ~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~-~--~~~p~i~~iNK~D~~  163 (843)
T PLN00116         98 YLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQAL-G--ERIRPVLTVNKMDRC  163 (843)
T ss_pred             eEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHH-H--CCCCEEEEEECCccc
Confidence            78899999999988877777789999999999999876555544444332 2  378999999999986

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.32  E-value=4.2e-11  Score=94.12  Aligned_cols=102  Identities=11%  Similarity=0.011  Sum_probs=64.4

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH---
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---  137 (221)
                      +..+.++||+|.....   ......+|.++++.+.......+..+.   .+.    ...-++|+||+|+........   
T Consensus       148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k~---gi~----E~aDIiVVNKaDl~~~~~a~~~~~  217 (332)
T PRK09435        148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIKK---GIM----ELADLIVINKADGDNKTAARRAAA  217 (332)
T ss_pred             CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHHh---hhh----hhhheEEeehhcccchhHHHHHHH
Confidence            4678999999965322   224667999999976444443333221   111    223389999999865432211   


Q ss_pred             -HHHHHh-------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          138 -QVTFHR-------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       138 -~~~~~~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                       ......       .+..+++.+|++++.|+++++..|.+.+.
T Consensus       218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~  260 (332)
T PRK09435        218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA  260 (332)
T ss_pred             HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence             111111       12257899999999999999999998654

>PTZ00416 elongation factor 2; Provisional

Probab=99.32  E-value=4.7e-12  Score=111.29  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCcc--CCccc------------CCcceeeeee--EEEec--------CcEEEEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYE------------PTIGVEVHPL--DFFTN--------CGKIRFYCW   67 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~~~------------~~~~~~~~~~--~~~~~--------~~~~~i~~~   67 (221)
                      +-.+|+|+|+.++|||||+++|+....  .....            ...|.+....  ...+.        .....+.++
T Consensus        18 ~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~li   97 (836)
T PTZ00416         18 QIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLI   97 (836)
T ss_pred             CcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEE
Confidence            345999999999999999999886321  10000            0111222211  11221        125679999


Q ss_pred             ecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      ||||+.++.......++.+|++++|+|+......+....| ..+..  .+.|+++++||+|+.
T Consensus        98 DtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~--~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         98 DSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ--ERIRPVLFINKVDRA  157 (836)
T ss_pred             cCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH--cCCCEEEEEEChhhh
Confidence            9999988877777778999999999999887554443333 33322  268999999999986

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.31  E-value=6.8e-12  Score=100.59  Aligned_cols=159  Identities=13%  Similarity=0.094  Sum_probs=101.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----ccccccc---
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----FGGLRDG---   81 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----~~~~~~~---   81 (221)
                      .+.+.-+++|+|.|++|||||+|.+.....  .+.+...+|..-....++.+-.+++++||||.-+    .++....   
T Consensus       164 IDp~trTlllcG~PNVGKSSf~~~vtradv--evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsI  241 (620)
T KOG1490|consen  164 IDPNTRTLLVCGYPNVGKSSFNNKVTRADD--EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQII  241 (620)
T ss_pred             CCCCcCeEEEecCCCCCcHhhccccccccc--ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHH
Confidence            467778999999999999999997544332  2233333333333334455556889999999421    1111111   


Q ss_pred             --ccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHH---HHH-HHhhcCCeEEEe
Q 027607           82 --YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAK---QVT-FHRKKNLQYYEI  152 (221)
Q Consensus        82 --~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~---~~~-~~~~~~~~~~~~  152 (221)
                        ..+--.+++++.|++...  |......++..+.....+.|+|+|+||+|.... ...++   ... .....+++++.+
T Consensus       242 TALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~t  321 (620)
T KOG1490|consen  242 TALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQT  321 (620)
T ss_pred             HHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEe
Confidence              112235788999998654  444445566666666679999999999997543 33332   222 333445899999


Q ss_pred             cccCCCChHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~  169 (221)
                      |+.+..|+..+......
T Consensus       322 S~~~eegVm~Vrt~ACe  338 (620)
T KOG1490|consen  322 SCVQEEGVMDVRTTACE  338 (620)
T ss_pred             cccchhceeeHHHHHHH
Confidence            99999999765544433

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.31  E-value=2.9e-12  Score=96.67  Aligned_cols=109  Identities=14%  Similarity=0.155  Sum_probs=54.5

Q ss_pred             EEEEEecCCcccccccccccc--------ccccEEEEEEECCChhhhcc-HHHHHHHHH-hhcCCCCEEEEEeCCCcCCc
Q 027607           63 RFYCWDTAGQEKFGGLRDGYY--------IHGQCAIIMFDVTARLTYKN-VPTWHRDLC-RVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~-~~~~~~p~ivv~nK~D~~~~  132 (221)
                      .+.++|||||.++...+....        ...-++++++|+....+... +..++..+. ...-+.|.+.|+||+|+...
T Consensus        92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~  171 (238)
T PF03029_consen   92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK  171 (238)
T ss_dssp             SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred             cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence            689999999876554443322        33457888888764322111 111111111 11138999999999998762


Q ss_pred             ccc------------------------HHHHHHHhhcC-C-eEEEecccCCCChHHHHHHHHHHH
Q 027607          133 QVK------------------------AKQVTFHRKKN-L-QYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       133 ~~~------------------------~~~~~~~~~~~-~-~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      ...                        .+........+ . .++++|+.++.|+.+++..|-+++
T Consensus       172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~  236 (238)
T PF03029_consen  172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN  236 (238)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence            200                        00011111112 3 699999999999999998887754

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PTZ00258 GTP-binding protein; Provisional

Probab=99.30  E-value=7.4e-11  Score=94.43  Aligned_cols=84  Identities=18%  Similarity=0.000  Sum_probs=56.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-----------------EEEEEEEecCCcc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-----------------KIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~i~~~D~~g~~   73 (221)
                      ..-++|+++|.||||||||+|++....  ....+.+++|..+....+...                 ...+.++||||..
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            345799999999999999999964333  344555666666555443322                 2348999999964


Q ss_pred             cccc----cc---ccccccccEEEEEEECC
Q 027607           74 KFGG----LR---DGYYIHGQCAIIMFDVT   96 (221)
Q Consensus        74 ~~~~----~~---~~~~~~~d~~i~v~d~~   96 (221)
                      .-..    +.   ...++.+|++++|+|+.
T Consensus        97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence            3211    11   22367899999999984

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=3.8e-11  Score=91.52  Aligned_cols=161  Identities=16%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCC--ccee--------------------eeeeEEEec------CcEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--IGVE--------------------VHPLDFFTN------CGKI   62 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~--~~~~--------------------~~~~~~~~~------~~~~   62 (221)
                      .++++|+++|+-.-|||||.++|.+ .+....+..  .|.+                    .+...-...      .--.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsG-vwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSG-VWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhc-eeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            6899999999999999999999554 322111100  0000                    000000000      1125


Q ss_pred             EEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHH
Q 027607           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFH  142 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~  142 (221)
                      ++.|.|.||++-....+..-..-.|+.++|+.++.+...-..+.-+-.+. ...-..++++-||+|+..+....+..+..
T Consensus        87 ~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~Ale-Iigik~iiIvQNKIDlV~~E~AlE~y~qI  165 (415)
T COG5257          87 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALE-IIGIKNIIIVQNKIDLVSRERALENYEQI  165 (415)
T ss_pred             EEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHh-hhccceEEEEecccceecHHHHHHHHHHH
Confidence            78999999998765554545556799999999998765544333333322 22467889999999997765554443332


Q ss_pred             h-------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          143 R-------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       143 ~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .       ..+.+++++||..+.|++.+++.|...+..
T Consensus       166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            2       236789999999999999999999986543

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=99.30  E-value=3.2e-12  Score=87.04  Aligned_cols=113  Identities=24%  Similarity=0.268  Sum_probs=76.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCccc-CCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +||+++|..|+|||+|+.++..+.+...+. ++.+                           +......+.+.++.++.|
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~---------------------------~~~~~~~~~~s~~~~~~v   53 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG---------------------------IDVYDPTSYESFDVVLQC   53 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh---------------------------hhhccccccCCCCEEEEE
Confidence            589999999999999999987666643222 2222                           233335567788999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      ++.++..++..+  |...+.... .+.|.++++||.|+.+...      ........++++|+++|.|+.
T Consensus        54 ~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~------~~~~~~~~~~~~s~~~~~~~~  115 (124)
T smart00010       54 WRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQ------VATEEGLEFAETSAKTPEEGE  115 (124)
T ss_pred             EEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCc------CCHHHHHHHHHHhCCCcchhh
Confidence            999999988765  665554432 4678899999999743221      111222345567888888874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=8.7e-11  Score=95.90  Aligned_cols=159  Identities=19%  Similarity=0.196  Sum_probs=108.0

Q ss_pred             CCCcccCCceEEEEEcCCCCcHHHHHHHHhcC--------------------cc---------CCcccCCcceeeeeeEE
Q 027607            5 NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--------------------EF---------EKKYEPTIGVEVHPLDF   55 (221)
Q Consensus         5 ~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~--------------------~~---------~~~~~~~~~~~~~~~~~   55 (221)
                      ..+......++++|+|...+|||||+.+++..                    ..         ........|++......
T Consensus       169 ~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~  248 (603)
T KOG0458|consen  169 DEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTT  248 (603)
T ss_pred             ccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeE
Confidence            34556668899999999999999999998761                    11         11122344677777777


Q ss_pred             EecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChh---hhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKN--VPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        56 ~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      .++.....+.++|.||+..|..-.-.-...+|+.++|+|++...   .|+.  ...-+..+.....-..++|++||+|+.
T Consensus       249 ~fes~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V  328 (603)
T KOG0458|consen  249 WFESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLV  328 (603)
T ss_pred             EEecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeeccccc
Confidence            78888889999999998888776666778899999999998543   2321  112222333333456778999999985


Q ss_pred             C-ccccHH-----HHHHH-hh-----cCCeEEEecccCCCChHHH
Q 027607          131 N-RQVKAK-----QVTFH-RK-----KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       131 ~-~~~~~~-----~~~~~-~~-----~~~~~~~~s~~~~~gv~~~  163 (221)
                      + .+.+.+     ...+. ..     ..+.|++||..+|+|+-..
T Consensus       329 ~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~  373 (603)
T KOG0458|consen  329 SWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI  373 (603)
T ss_pred             CccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence            4 221211     11222 22     2357999999999998543

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.30  E-value=3.3e-11  Score=92.96  Aligned_cols=149  Identities=19%  Similarity=0.232  Sum_probs=102.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccC------------C-------------------cccCCcceeeeeeEEEecC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE------------K-------------------KYEPTIGVEVHPLDFFTNC   59 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~------------~-------------------~~~~~~~~~~~~~~~~~~~   59 (221)
                      ...+|++.+|.-.=|||||+-+|+.....            +                   ......|.|.+.-...+..
T Consensus         4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT   83 (431)
T COG2895           4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST   83 (431)
T ss_pred             ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence            35699999999999999999998873220            0                   0011224455554455566


Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc------
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------  133 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------  133 (221)
                      ....|.+.||||++.|...+..-...+|..|+++|+...-.-+  .+-...+.....-+.+++.+||+|+.+..      
T Consensus        84 ~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~Q--TrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~  161 (431)
T COG2895          84 EKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQ--TRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEA  161 (431)
T ss_pred             ccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHH--hHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHH
Confidence            6788999999999998776666778899999999996542211  12222222333467788999999997632      


Q ss_pred             ccHHHHHHHhhcCC---eEEEecccCCCChH
Q 027607          134 VKAKQVTFHRKKNL---QYYEISAKSNYNFE  161 (221)
Q Consensus       134 ~~~~~~~~~~~~~~---~~~~~s~~~~~gv~  161 (221)
                      +..+-..++...++   .++++||+.|.|+-
T Consensus       162 I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         162 IVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             HHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            23344466666664   58999999999984

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=99.29  E-value=9e-11  Score=89.67  Aligned_cols=158  Identities=18%  Similarity=0.286  Sum_probs=105.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCcEEEEEEEecCCcccccccccccccc---c-
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCGKIRFYCWDTAGQEKFGGLRDGYYIH---G-   86 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~D~~g~~~~~~~~~~~~~~---~-   86 (221)
                      --+|+|+|.+|+|||||+.+|- +..  .+....|..|....+.-  .....++.+|-..|..-..++....+..   + 
T Consensus        52 gk~VlvlGdn~sGKtsLi~klq-g~e--~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae  128 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQ-GSE--TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE  128 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhh-ccc--ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence            3589999999999999999944 332  23344444444443322  2234577888888865444444333322   2 


Q ss_pred             cEEEEEEECCChhh-hccHHHHHHHHHhhcC-------------------------------------------------
Q 027607           87 QCAIIMFDVTARLT-YKNVPTWHRDLCRVCE-------------------------------------------------  116 (221)
Q Consensus        87 d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~-------------------------------------------------  116 (221)
                      -.+|++.+++++.. ++.+..|...+.++..                                                 
T Consensus       129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~  208 (473)
T KOG3905|consen  129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV  208 (473)
T ss_pred             eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence            35788999999853 4666666554433210                                                 


Q ss_pred             -------------CCCEEEEEeCCCcC-----Ccccc--------HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          117 -------------NIPIVLCGNKVDVK-----NRQVK--------AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       117 -------------~~p~ivv~nK~D~~-----~~~~~--------~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                                   ++|++||++|+|..     .....        ....++|.++|...+.+|++...|++.+..+|.+.
T Consensus       209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr  288 (473)
T KOG3905|consen  209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHR  288 (473)
T ss_pred             ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHH
Confidence                         14999999999962     22222        23447888999999999999999999999999997


Q ss_pred             HhC
Q 027607          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      ++.
T Consensus       289 ~yG  291 (473)
T KOG3905|consen  289 SYG  291 (473)
T ss_pred             hcC
Confidence            654

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.29  E-value=1.5e-10  Score=94.51  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=115.9

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ..+++-+.+.|+|+.++|||.|+++++++.+......+....+........+....+.+.|++-. ....+...- ..+|
T Consensus       420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cD  497 (625)
T KOG1707|consen  420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACD  497 (625)
T ss_pred             cccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceee
Confidence            45778899999999999999999999988876654455544444444444455556666676654 233332333 6789


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCe-EEEecccCCCChHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~~~  164 (221)
                      ++.++||.+++.+|..+...++..... ...|++.|++|+|+....  .....-.++.+++++ ...+|..+... ..+|
T Consensus       498 v~~~~YDsS~p~sf~~~a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~lf  575 (625)
T KOG1707|consen  498 VACLVYDSSNPRSFEYLAEVYNKYFDL-YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NELF  575 (625)
T ss_pred             eEEEecccCCchHHHHHHHHHHHhhhc-cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chHH
Confidence            999999999999998877665554443 689999999999986533  222226788888876 56677775333 8899


Q ss_pred             HHHHHHHhCCCC
Q 027607          165 LYLARKLAGDPN  176 (221)
Q Consensus       165 ~~l~~~l~~~~~  176 (221)
                      ..|+.+ ..+|.
T Consensus       576 ~kL~~~-A~~Ph  586 (625)
T KOG1707|consen  576 IKLATM-AQYPH  586 (625)
T ss_pred             HHHHHh-hhCCC
Confidence            999885 44444

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.28  E-value=2.4e-11  Score=92.39  Aligned_cols=95  Identities=15%  Similarity=0.133  Sum_probs=76.7

Q ss_pred             cccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEE
Q 027607           73 EKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYY  150 (221)
Q Consensus        73 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~  150 (221)
                      ++++.+.+.+++++|++++|+|++++. ++..+..|+..+..  .+.|+++|+||+|+.+.. ...+........+..++
T Consensus        24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~~~~~~~~~~~~g~~v~  101 (245)
T TIGR00157        24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA--QNIEPIIVLNKIDLLDDEDMEKEQLDIYRNIGYQVL  101 (245)
T ss_pred             cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECcccCCCHHHHHHHHHHHHHCCCeEE
Confidence            567788888999999999999999887 88899999876644  489999999999996433 22233344445788999


Q ss_pred             EecccCCCChHHHHHHHHH
Q 027607          151 EISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~  169 (221)
                      .+|+++|.|++++|..+..
T Consensus       102 ~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157       102 MTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEecCCchhHHHHHhhhcC
Confidence            9999999999999987764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.27  E-value=7.1e-11  Score=104.54  Aligned_cols=103  Identities=18%  Similarity=0.279  Sum_probs=69.9

Q ss_pred             EEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc--------
Q 027607           64 FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV--------  134 (221)
Q Consensus        64 i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~--------  134 (221)
                      +.+|||||++.+..++...+..+|++++|+|+++...-+.. ..+..+..  .+.|+++|+||+|+... ..        
T Consensus       528 i~fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~-e~I~~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~  604 (1049)
T PRK14845        528 LLFIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTI-EAINILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLL  604 (1049)
T ss_pred             EEEEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHH-HHHHHHHH--cCCCEEEEEECCCCccccccccchhhhh
Confidence            89999999999888777778889999999999874221111 11222222  27899999999998531 10        


Q ss_pred             -----cHHHH-H-------H---Hh---------------hcCCeEEEecccCCCChHHHHHHHHH
Q 027607          135 -----KAKQV-T-------F---HR---------------KKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       135 -----~~~~~-~-------~---~~---------------~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                           .+... +       .   ..               ...++++++||++|.|++++..+|..
T Consensus       605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence                 00000 0       0   01               12457899999999999999987764

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.27  E-value=9.9e-11  Score=87.02  Aligned_cols=151  Identities=13%  Similarity=0.113  Sum_probs=80.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCC----cccCCc--ceeeee------eEEEecC------------------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTI--GVEVHP------LDFFTNC------------------   59 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----~~~~~~--~~~~~~------~~~~~~~------------------   59 (221)
                      +..-..|+|+|+.|||||||+++++......    ......  +.+...      ....+.+                  
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~   98 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDL   98 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence            3456789999999999999999987531100    000000  000000      0000000                  


Q ss_pred             --cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--c
Q 027607           60 --GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--K  135 (221)
Q Consensus        60 --~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~  135 (221)
                        ....+.++++.|.-..   ...+....+..+.|+|+.+....     .......  ...|.++++||+|+.+...  .
T Consensus        99 ~~~~~d~IiIEt~G~l~~---~~~~~~~~~~~i~Vvd~~~~d~~-----~~~~~~~--~~~a~iiv~NK~Dl~~~~~~~~  168 (207)
T TIGR00073        99 PLDDIDLLFIENVGNLVC---PADFDLGEHMRVVLLSVTEGDDK-----PLKYPGM--FKEADLIVINKADLAEAVGFDV  168 (207)
T ss_pred             ccCCCCEEEEecCCCcCC---CcccccccCeEEEEEecCcccch-----hhhhHhH--HhhCCEEEEEHHHccccchhhH
Confidence              1234566677662100   01111223445567777644311     1111111  1567899999999865321  1


Q ss_pred             HHHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHH
Q 027607          136 AKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       136 ~~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      .+.......  ...+++.+|+++|.|++++++++.+.
T Consensus       169 ~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       169 EKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             HHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            222222222  24789999999999999999999874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.26  E-value=1e-11  Score=98.28  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=78.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCc---ceeeeeeEEEecCcEEEEEEEecCCccccccccccc----
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI---GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----   82 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~----   82 (221)
                      +...++|+|+|.+|+|||||+|+|.+-+.........   .+|.....+... +.-.+.+||.||..........|    
T Consensus        32 ~~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~  110 (376)
T PF05049_consen   32 DNAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEV  110 (376)
T ss_dssp             HH--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHT
T ss_pred             hcCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHc
Confidence            4567999999999999999999975422211111122   223333333222 22368999999964433333333    


Q ss_pred             -cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc--CC------ccccHH-H----HHHH----hh
Q 027607           83 -YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN------RQVKAK-Q----VTFH----RK  144 (221)
Q Consensus        83 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~--~~------~~~~~~-~----~~~~----~~  144 (221)
                       +..-|.+|++.+-.-...  ++ .+...+...  ++|+.+|-+|+|.  .+      +....+ .    ...|    ..
T Consensus       111 ~~~~yD~fiii~s~rf~~n--dv-~La~~i~~~--gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k  185 (376)
T PF05049_consen  111 KFYRYDFFIIISSERFTEN--DV-QLAKEIQRM--GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK  185 (376)
T ss_dssp             TGGG-SEEEEEESSS--HH--HH-HHHHHHHHT--T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred             cccccCEEEEEeCCCCchh--hH-HHHHHHHHc--CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence             456788777766432221  11 122333333  8899999999995  11      111111 1    1111    12


Q ss_pred             cC---CeEEEecccCCC--ChHHHHHHHHHHHhCCCC
Q 027607          145 KN---LQYYEISAKSNY--NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       145 ~~---~~~~~~s~~~~~--gv~~~~~~l~~~l~~~~~  176 (221)
                      .+   -++|-+|...-.  +...+.+.|.+.+....+
T Consensus       186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr  222 (376)
T PF05049_consen  186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKR  222 (376)
T ss_dssp             TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGH
T ss_pred             cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHH
Confidence            23   357888887643  567788888877665554

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.26  E-value=5.8e-11  Score=86.03  Aligned_cols=51  Identities=20%  Similarity=0.230  Sum_probs=46.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      +|-++...+|+|++..+|++.+.|||+++     +||+-..+..+.++.++.++++
T Consensus       138 SGGQqQRVAIARALaM~P~vmLFDEPTSA-----LDPElv~EVL~vm~~LA~eGmT  188 (240)
T COG1126         138 SGGQQQRVAIARALAMDPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEGMT  188 (240)
T ss_pred             CcHHHHHHHHHHHHcCCCCEEeecCCccc-----CCHHHHHHHHHHHHHHHHcCCe
Confidence            35566778899999999999999999999     9999999999999999999864

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.26  E-value=8.7e-12  Score=93.90  Aligned_cols=54  Identities=20%  Similarity=0.254  Sum_probs=46.3

Q ss_pred             EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ..++.++|  -+....+|++++.+++++.++|||++.     +|...+.++.+.+++++.+
T Consensus       134 r~~~~LSG--GerQrv~iArALaQ~~~iLLLDEPTs~-----LDi~~Q~evl~ll~~l~~~  187 (258)
T COG1120         134 RPVDELSG--GERQRVLIARALAQETPILLLDEPTSH-----LDIAHQIEVLELLRDLNRE  187 (258)
T ss_pred             CcccccCh--hHHHHHHHHHHHhcCCCEEEeCCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence            33556655  455567899999999999999999999     9999999999999999844

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.25  E-value=2.8e-11  Score=105.31  Aligned_cols=116  Identities=22%  Similarity=0.200  Sum_probs=77.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC--CcccC------------CcceeeeeeE----EEecCcEEEEEEEecCCcc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEP------------TIGVEVHPLD----FFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~--~~~~~------------~~~~~~~~~~----~~~~~~~~~i~~~D~~g~~   73 (221)
                      +-.+|+++|+.++|||||+.+|+.....  .....            ..|.+.....    ....+.+..+.++||||+.
T Consensus        19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~   98 (731)
T PRK07560         19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV   98 (731)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence            3457999999999999999998753211  10000            0112222111    1223356789999999998


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      ++.......++.+|++++|+|+......+....|... ..  .+.|.++++||+|+.
T Consensus        99 df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~-~~--~~~~~iv~iNK~D~~  152 (731)
T PRK07560         99 DFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQA-LR--ERVKPVLFINKVDRL  152 (731)
T ss_pred             ChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHH-HH--cCCCeEEEEECchhh
Confidence            8877777788999999999999876444433333322 22  256889999999975

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.22  E-value=2e-10  Score=91.03  Aligned_cols=81  Identities=16%  Similarity=0.017  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCc---------------EEEEEEEecCCccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEKFG   76 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~i~~~D~~g~~~~~   76 (221)
                      ++|+++|.||||||||+|++....  ....+.+++|..+....+  ...               ...+.++|+||...-.
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            789999999999999999976554  233444555555443222  211               1358999999964321


Q ss_pred             c----cccc---ccccccEEEEEEECC
Q 027607           77 G----LRDG---YYIHGQCAIIMFDVT   96 (221)
Q Consensus        77 ~----~~~~---~~~~~d~~i~v~d~~   96 (221)
                      .    +...   .++.+|++++|+|+.
T Consensus        81 ~~g~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SKGEGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             ChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence            1    1112   367899999999984

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.20  E-value=5.7e-10  Score=88.71  Aligned_cols=152  Identities=17%  Similarity=0.186  Sum_probs=87.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCC--------------cccCCcc---eeeeeeE-------EE-ecCcEEEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEK--------------KYEPTIG---VEVHPLD-------FF-TNCGKIRFYCW   67 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~--------------~~~~~~~---~~~~~~~-------~~-~~~~~~~i~~~   67 (221)
                      ++.|+|+|+.++|||||+|+|..-...+              ...+..|   +|.+++.       +. .++-...+.++
T Consensus        17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI   96 (492)
T TIGR02836        17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV   96 (492)
T ss_pred             cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence            5899999999999999999976541111              2234455   4444433       22 12334688999


Q ss_pred             ecCCcccccc--------------c---------------cccccc-cccEEEEEE-ECCC----hhhh-ccHHHHHHHH
Q 027607           68 DTAGQEKFGG--------------L---------------RDGYYI-HGQCAIIMF-DVTA----RLTY-KNVPTWHRDL  111 (221)
Q Consensus        68 D~~g~~~~~~--------------~---------------~~~~~~-~~d~~i~v~-d~~~----~~s~-~~~~~~~~~~  111 (221)
                      ||+|...-..              -               ....+. +++..++|. |.+-    +..+ ..-..++..+
T Consensus        97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL  176 (492)
T TIGR02836        97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL  176 (492)
T ss_pred             ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence            9999321111              0               111244 788888887 6641    1111 2233556666


Q ss_pred             HhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccC--CCChHHHHHH
Q 027607          112 CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS--NYNFEKPFLY  166 (221)
Q Consensus       112 ~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~gv~~~~~~  166 (221)
                      ...  ++|+++|+||.|-...........+....+.+++.+|+..  -..+..+++.
T Consensus       177 k~~--~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~  231 (492)
T TIGR02836       177 KEL--NKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVESMRESDILSVLEE  231 (492)
T ss_pred             Hhc--CCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHH
Confidence            554  8999999999993222222222344556677877777653  3344444333

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=99.20  E-value=9.2e-10  Score=90.34  Aligned_cols=164  Identities=23%  Similarity=0.297  Sum_probs=109.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC--cEEEEEEEecCCcccccccccccccc-
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC--GKIRFYCWDTAGQEKFGGLRDGYYIH-   85 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~D~~g~~~~~~~~~~~~~~-   85 (221)
                      ...++-.|+|+|..++|||||+.+|....   ....+.+..|....+.-..  ...++.+|-..|...+..+....+.. 
T Consensus        21 ~~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~   97 (472)
T PF05783_consen   21 KLPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPE   97 (472)
T ss_pred             cCCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcc
Confidence            34566799999999999999999965332   2344566666555443322  23578999988865555555443332 


Q ss_pred             ---ccEEEEEEECCChhhh-ccHHHHHHHHHhhc------------------------------C---------------
Q 027607           86 ---GQCAIIMFDVTARLTY-KNVPTWHRDLCRVC------------------------------E---------------  116 (221)
Q Consensus        86 ---~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~------------------------------~---------------  116 (221)
                         --.+++|.|.+.+..+ +.+..|+..+..+.                              .               
T Consensus        98 ~l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~  177 (472)
T PF05783_consen   98 NLPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSS  177 (472)
T ss_pred             cccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccc
Confidence               2468889999988654 33444432221100                              0               


Q ss_pred             ------------------CCCEEEEEeCCCcCC-----ccccHH--------HHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607          117 ------------------NIPIVLCGNKVDVKN-----RQVKAK--------QVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus       117 ------------------~~p~ivv~nK~D~~~-----~~~~~~--------~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                                        ++|++||++|+|...     ....++        ...+|..+|..++.+|++...+++.++.
T Consensus       178 ~~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~  257 (472)
T PF05783_consen  178 DDESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYK  257 (472)
T ss_pred             ccccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHH
Confidence                              259999999999522     111122        3467888999999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027607          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      +|.+.++..+
T Consensus       258 yi~h~l~~~~  267 (472)
T PF05783_consen  258 YILHRLYGFP  267 (472)
T ss_pred             HHHHHhccCC
Confidence            9999886644

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.20  E-value=1.3e-10  Score=83.52  Aligned_cols=63  Identities=17%  Similarity=0.197  Sum_probs=44.0

Q ss_pred             EEEEEecCCccc----cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607           63 RFYCWDTAGQEK----FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        63 ~i~~~D~~g~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (221)
                      .+.++||||...    ...++..++..+|++++|.+++...+-.....+.+.....  ...+++|.||+
T Consensus       102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--KSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT--CSSEEEEEE-G
T ss_pred             ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC--CCeEEEEEcCC
Confidence            478999999643    2345677789999999999999866555554555444433  44588999984

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.19  E-value=2.7e-11  Score=87.55  Aligned_cols=54  Identities=22%  Similarity=0.238  Sum_probs=47.5

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -|+..-+|-+.....|+|++.-.|++.++|||+++     +|+-....+++.+.++..+
T Consensus       145 ~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSA-----LDPIsT~kIEeLi~eLk~~  198 (253)
T COG1117         145 KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSA-----LDPISTLKIEELITELKKK  198 (253)
T ss_pred             CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccc-----cCchhHHHHHHHHHHHHhc
Confidence            55666667777778899999999999999999999     9999999999999998854

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.19  E-value=5.6e-10  Score=86.31  Aligned_cols=116  Identities=19%  Similarity=0.255  Sum_probs=66.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcc----------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---cc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LR   79 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~~   79 (221)
                      .|+|+|+|.+|+|||||+|.|+........          ..+...........-++..+.+.++||||......   .+
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            589999999999999999998875443321          11222233333444455678899999999321100   00


Q ss_pred             ---ccc-------------------c--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           80 ---DGY-------------------Y--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        80 ---~~~-------------------~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                         ..|                   +  ...++++++++.+... +..+  -+..+......+++|.|+.|+|...
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~-L~~~--Di~~mk~Ls~~vNvIPvIaKaD~lt  156 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHG-LKPL--DIEFMKRLSKRVNVIPVIAKADTLT  156 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSS-S-HH--HHHHHHHHTTTSEEEEEESTGGGS-
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCcc-chHH--HHHHHHHhcccccEEeEEecccccC
Confidence               000                   1  1468999999876421 1111  1233444445789999999999743

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.18  E-value=7.8e-11  Score=85.84  Aligned_cols=160  Identities=18%  Similarity=0.277  Sum_probs=98.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccc-----cccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYYIH   85 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~-----~~~~~~~~~~   85 (221)
                      .-||+++|.+||||||+--.+..+...-. ....|-+.+..  ...+- ++..+.+||++|++.+     .......+++
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D-~~rlg~tidveHsh~Rfl-Gnl~LnlwDcGgqe~fmen~~~~q~d~iF~n   81 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFANYIARD-TRRLGATIDVEHSHVRFL-GNLVLNLWDCGGQEEFMENYLSSQEDNIFRN   81 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhhhhhhh-hhccCCcceeeehhhhhh-hhheeehhccCCcHHHHHHHHhhcchhhhee
Confidence            46899999999999998776554332111 11222222211  11222 4577899999998732     2344667899


Q ss_pred             ccEEEEEEECCChhhhccHHHH---HHHHHhhcCCCCEEEEEeCCCcCCccccHHHH--------HHHhhcCCeEEEecc
Q 027607           86 GQCAIIMFDVTARLTYKNVPTW---HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--------TFHRKKNLQYYEISA  154 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~---~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--------~~~~~~~~~~~~~s~  154 (221)
                      .+++++|||+...+--.++..+   ++.+.++++...+....+|+|+......+...        ......++.++++|.
T Consensus        82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Tsi  161 (295)
T KOG3886|consen   82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTSI  161 (295)
T ss_pred             heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccch
Confidence            9999999999877654554444   34455666777888899999986544333222        122234566777776


Q ss_pred             cCCCChHHHHHHHHHHHhCCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      .+ +.+-+.+..+...+.+++
T Consensus       162 wD-etl~KAWS~iv~~lipn~  181 (295)
T KOG3886|consen  162 WD-ETLYKAWSSIVYNLIPNV  181 (295)
T ss_pred             hh-HHHHHHHHHHHHhhCCCh
Confidence            53 444455555555555544

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=9.1e-10  Score=84.94  Aligned_cols=159  Identities=18%  Similarity=0.110  Sum_probs=93.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCc-----ccCCcceeeeeeE--EEe-------cCcEEEEEEEecCCccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLD--FFT-------NCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~-----~~~~~~~~~~~~~--~~~-------~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      .++++++|.-.||||||.+++..-.-...     .+...|.+.+--.  ..+       .+....+.++|+||+...-..
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt   86 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT   86 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence            49999999999999999999764222111     1122233322211  111       123467899999997543222


Q ss_pred             cccccccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHH----HHHh-------hc
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHR-------KK  145 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~----~~~~-------~~  145 (221)
                      .-.-..-.|..++|+|+....--+... ..+..+    .....++|+||.|...+.... ...    +...       ..
T Consensus        87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~----~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g  162 (522)
T KOG0461|consen   87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGEL----LCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG  162 (522)
T ss_pred             HHhhhheeeeeeEEEehhcccccccchhhhhhhh----hccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence            222233458889999998654322221 111111    245677888998864432221 111    1111       12


Q ss_pred             CCeEEEecccCC----CChHHHHHHHHHHHhCCC
Q 027607          146 NLQYYEISAKSN----YNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       146 ~~~~~~~s~~~~----~gv~~~~~~l~~~l~~~~  175 (221)
                      +.+++++|+..|    .++.++.+.|.+++..-.
T Consensus       163 ~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~  196 (522)
T KOG0461|consen  163 NSPIVEVSAADGYFKEEMIQELKEALESRIFEPK  196 (522)
T ss_pred             CCceeEEecCCCccchhHHHHHHHHHHHhhcCCC
Confidence            368999999999    888998888888776544

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.16  E-value=6.8e-11  Score=95.81  Aligned_cols=158  Identities=21%  Similarity=0.355  Sum_probs=120.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      -+.+++|++|+|..++|||+|+++++.+.+.....+.-  ..++.++.+++....+.+.|.+|...     ..|-..+|+
T Consensus        26 rsipelk~givg~~~sgktalvhr~ltgty~~~e~~e~--~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvda   98 (749)
T KOG0705|consen   26 RSIPELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEG--GRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDA   98 (749)
T ss_pred             cccchhheeeeecccCCceeeeeeeccceeccccCCcC--ccceeeEEeeccceEeeeecccCCch-----hhhhhhccc
Confidence            46789999999999999999999999999876544433  35666777788888889999888322     456678999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcC----CccccHHHH-HHHhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~----~~~~~~~~~-~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +|+||...+..+|+.+..+...+..+.  ...|+++++++.-..    +-....+.. ..+....+.+++.++.+|.++.
T Consensus        99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~  178 (749)
T KOG0705|consen   99 VVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVE  178 (749)
T ss_pred             eEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHH
Confidence            999999999999998887766665432  467888888875432    222222333 4455667889999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ..|+.+...+..
T Consensus       179 rvf~~~~~k~i~  190 (749)
T KOG0705|consen  179 RVFQEVAQKIVQ  190 (749)
T ss_pred             HHHHHHHHHHHH
Confidence            999998887654

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.13  E-value=4.9e-10  Score=87.85  Aligned_cols=101  Identities=10%  Similarity=-0.017  Sum_probs=62.0

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH---
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---  137 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---  137 (221)
                      ++.+.++||+|....   ....+..+|.++++.....   ...+..+...+    ..+|.++|+||+|+........   
T Consensus       126 g~D~viidT~G~~~~---e~~i~~~aD~i~vv~~~~~---~~el~~~~~~l----~~~~~ivv~NK~Dl~~~~~~~~~~~  195 (300)
T TIGR00750       126 GYDVIIVETVGVGQS---EVDIANMADTFVVVTIPGT---GDDLQGIKAGL----MEIADIYVVNKADGEGATNVTIARL  195 (300)
T ss_pred             CCCEEEEeCCCCchh---hhHHHHhhceEEEEecCCc---cHHHHHHHHHH----hhhccEEEEEcccccchhHHHHHHH
Confidence            467889999985321   1234566788777744332   23333222222    2678899999999875432111   


Q ss_pred             H-----HHHHh---hcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          138 Q-----VTFHR---KKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       138 ~-----~~~~~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      .     .....   .+..+++.+|++++.|+++++.+|.+.+
T Consensus       196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~  237 (300)
T TIGR00750       196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK  237 (300)
T ss_pred             HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            0     01111   1224589999999999999999998864

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.13  E-value=3.7e-10  Score=94.52  Aligned_cols=160  Identities=22%  Similarity=0.230  Sum_probs=103.0

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCcc----CCcccCCcceeeeeeEEE--------ec----CcEEEEEEEecCC
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFF--------TN----CGKIRFYCWDTAG   71 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~----~~~~~~~~~~~~~~~~~~--------~~----~~~~~i~~~D~~g   71 (221)
                      ...-+..-|||+|+-.+|||-|+..+-....    .+.....+|-++.+..-.        -.    .+---+.++||||
T Consensus       470 ~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpg  549 (1064)
T KOG1144|consen  470 TENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPG  549 (1064)
T ss_pred             chhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCC
Confidence            3455677899999999999999998554222    122233444444443210        00    1112467899999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-------Ccccc---------
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-------NRQVK---------  135 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-------~~~~~---------  135 (221)
                      ++.|..++......+|.+|+|+|+...---+.+ .-++.++..  +.|+||.+||+|..       +..+.         
T Consensus       550 hEsFtnlRsrgsslC~~aIlvvdImhGlepqti-ESi~lLR~r--ktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k~  626 (1064)
T KOG1144|consen  550 HESFTNLRSRGSSLCDLAILVVDIMHGLEPQTI-ESINLLRMR--KTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKKD  626 (1064)
T ss_pred             chhhhhhhhccccccceEEEEeehhccCCcchh-HHHHHHHhc--CCCeEEeehhhhhhcccccCCCchHHHHHHHhhHH
Confidence            999999999999999999999999865322222 123333333  89999999999951       11100         


Q ss_pred             --HH--------HHHHHhh--------------cCCeEEEecccCCCChHHHHHHHHHH
Q 027607          136 --AK--------QVTFHRK--------------KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       136 --~~--------~~~~~~~--------------~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                        .+        ..+++..              ..+.++++||.+|.|+.+++.+|++.
T Consensus       627 v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~l  685 (1064)
T KOG1144|consen  627 VQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQL  685 (1064)
T ss_pred             HHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHH
Confidence              00        0011110              01357889999999999999888773

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.10  E-value=3.2e-10  Score=88.79  Aligned_cols=119  Identities=14%  Similarity=0.126  Sum_probs=75.4

Q ss_pred             EEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChhh--h-----ccHHHHHHHHHhhc-----CCCCEEE
Q 027607           55 FFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT--Y-----KNVPTWHRDLCRVC-----ENIPIVL  122 (221)
Q Consensus        55 ~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s--~-----~~~~~~~~~~~~~~-----~~~p~iv  122 (221)
                      ..+.-++..+.++|++||...+..|.+.+.++++++||+++++-.-  +     ..+..-+..+...+     .+.++|+
T Consensus       188 ~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiL  267 (354)
T KOG0082|consen  188 VEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIIL  267 (354)
T ss_pred             EEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEE
Confidence            3344456889999999999999999999999999999999985321  1     11222233333222     4789999


Q ss_pred             EEeCCCcCCcc-----------------ccHHHHHHHh--------h--cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          123 CGNKVDVKNRQ-----------------VKAKQVTFHR--------K--KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       123 v~nK~D~~~~~-----------------~~~~~~~~~~--------~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ++||.|+-.+.                 ...++..+..        .  ..+.+..+.|..-.+++.+|..+...+.+
T Consensus       268 FLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  268 FLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ  345 (354)
T ss_pred             EeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence            99999962211                 1111111111        1  22334556677777777777777766544

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.10  E-value=3.5e-10  Score=84.60  Aligned_cols=99  Identities=8%  Similarity=0.029  Sum_probs=58.5

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH--
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--  139 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--  139 (221)
                      +.+.++.|.|--...   .....-+|.+++|....-....+.++.=+-++       .=++|+||+|...........  
T Consensus       122 ~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-------aDi~vVNKaD~~gA~~~~~~l~~  191 (266)
T PF03308_consen  122 FDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-------ADIFVVNKADRPGADRTVRDLRS  191 (266)
T ss_dssp             -SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH--------SEEEEE--SHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-------ccEEEEeCCChHHHHHHHHHHHH
Confidence            446666665521111   22345689999999988777777665433333       337899999965433222211  


Q ss_pred             --HHHh----hcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          140 --TFHR----KKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       140 --~~~~----~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                        .+..    .+..+++.+|+.++.|++++++.|.+.
T Consensus       192 ~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~  228 (266)
T PF03308_consen  192 MLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEH  228 (266)
T ss_dssp             HHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             HHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence              1111    123579999999999999999988873

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.10  E-value=5.8e-10  Score=88.44  Aligned_cols=137  Identities=18%  Similarity=0.197  Sum_probs=95.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc-Cc-------cCC------------cccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT-GE-------FEK------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~-~~-------~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      ++-+.+|+-+|.+|||||...|+. |+       ...            ......|++..+.-..++..+..+.+.||||
T Consensus        11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG   90 (528)
T COG4108          11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG   90 (528)
T ss_pred             hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCC
Confidence            557899999999999999998775 11       111            1112334555555666777788999999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEE
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (221)
                      ++++..=....+..+|.+++|+|+....--+.+ +++...+  ..+.|++-++||.|...+..-+-..+....+++...+
T Consensus        91 HeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~-KLfeVcr--lR~iPI~TFiNKlDR~~rdP~ELLdEiE~~L~i~~~P  167 (528)
T COG4108          91 HEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL-KLFEVCR--LRDIPIFTFINKLDREGRDPLELLDEIEEELGIQCAP  167 (528)
T ss_pred             ccccchhHHHHHHhhheeeEEEecccCccHHHH-HHHHHHh--hcCCceEEEeeccccccCChHHHHHHHHHHhCcceec
Confidence            999887777778889999999999765322221 2222222  2489999999999988766555555555566655444

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.09  E-value=7.7e-11  Score=86.47  Aligned_cols=55  Identities=18%  Similarity=0.295  Sum_probs=46.4

Q ss_pred             EEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          149 YYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       149 ~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +..++.++|..-+.  ..|+++++++|++.+-|||.+.     +|+...+.+.+.++.++++
T Consensus       142 ~qra~~LSGGQQQR--VaIARaL~Q~pkiILADEPvas-----LDp~~a~~Vm~~l~~in~~  196 (258)
T COG3638         142 YQRASTLSGGQQQR--VAIARALVQQPKIILADEPVAS-----LDPESAKKVMDILKDINQE  196 (258)
T ss_pred             HHHhccCCcchhHH--HHHHHHHhcCCCEEecCCcccc-----cChhhHHHHHHHHHHHHHH
Confidence            45566676555555  7799999999999999999999     9999999999999987765

>smart00053 DYNc Dynamin, GTPase

Probab=99.09  E-value=5e-10  Score=84.30  Aligned_cols=69  Identities=9%  Similarity=0.096  Sum_probs=43.6

Q ss_pred             EEEEEEecCCcccc-------------cccccccccc-ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607           62 IRFYCWDTAGQEKF-------------GGLRDGYYIH-GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        62 ~~i~~~D~~g~~~~-------------~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (221)
                      ..+.++|+||....             ..+...|+.+ .+.+++|+|+.....-.....+...+..  ...++++|+||.
T Consensus       125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~--~~~rti~ViTK~  202 (240)
T smart00053      125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDP--QGERTIGVITKL  202 (240)
T ss_pred             CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHH--cCCcEEEEEECC
Confidence            46889999996421             1233445664 4588999998754332222233333332  378999999999


Q ss_pred             CcCCc
Q 027607          128 DVKNR  132 (221)
Q Consensus       128 D~~~~  132 (221)
                      |..++
T Consensus       203 D~~~~  207 (240)
T smart00053      203 DLMDE  207 (240)
T ss_pred             CCCCc
Confidence            98654

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=99.08  E-value=9.1e-10  Score=91.31  Aligned_cols=115  Identities=17%  Similarity=0.187  Sum_probs=81.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccC---------------CcceeeeeeEEE-----ecCcEEEEEEEecCC
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP---------------TIGVEVHPLDFF-----TNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~i~~~D~~g   71 (221)
                      .-.+|+++|+-++|||+|+..|...........               ..|.+......+     ..++.+.++++||||
T Consensus       127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG  206 (971)
T KOG0468|consen  127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG  206 (971)
T ss_pred             eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence            557899999999999999998665433221111               112222222222     245678899999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  129 (221)
                      +-.+.......++.+|++++++|+.+.-.++.-+.....+.   ...|+.+|+||+|+
T Consensus       207 HVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  207 HVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQ---NRLPIVVVINKVDR  261 (971)
T ss_pred             cccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHh---ccCcEEEEEehhHH
Confidence            98888887888999999999999998876655333333332   38999999999995

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.06  E-value=3.1e-09  Score=82.95  Aligned_cols=46  Identities=24%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+....|+.++..+|+++++|||+++     +|+.......+.++.++.++
T Consensus       141 ~kqrl~ia~aL~~~P~lliLDEPt~G-----LDp~~~~~~~~~l~~l~~~g  186 (293)
T COG1131         141 MKQRLSIALALLHDPELLILDEPTSG-----LDPESRREIWELLRELAKEG  186 (293)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            44456799999999999999999999     99999999999999999876

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.05  E-value=1.5e-09  Score=90.94  Aligned_cols=119  Identities=10%  Similarity=0.075  Sum_probs=69.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-------c---ccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------L---RDG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-------~---~~~   81 (221)
                      ..++|+|+|.+|+||||++|+++............+++.. ........+..+.++||||......       +   ...
T Consensus       117 fslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~-~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       117 FSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSV-QEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEE-EEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            4579999999999999999998876533222222333332 2221122346799999999654311       0   111


Q ss_pred             ccc--cccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCC
Q 027607           82 YYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN  131 (221)
Q Consensus        82 ~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~  131 (221)
                      ++.  ..|++++|..++.......-..++..+....   --..+|||+|+.|...
T Consensus       196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp  250 (763)
T TIGR00993       196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP  250 (763)
T ss_pred             HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence            222  4789999987753322212223344443322   2457899999999753

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.04  E-value=3.2e-09  Score=75.91  Aligned_cols=76  Identities=11%  Similarity=0.013  Sum_probs=47.8

Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCcccc--HHHHH--HHhhcCCeEEEecccCCCCh
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK--AKQVT--FHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~--~~~~~--~~~~~~~~~~~~s~~~~~gv  160 (221)
                      ..-|+|+|++..+..-         ++..+  ...=++|+||.|+....-.  +....  ..-.-..+++.+|.++|.|+
T Consensus       119 ~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~  189 (202)
T COG0378         119 HLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGL  189 (202)
T ss_pred             ceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCH
Confidence            3778888887663211         01000  1133789999999764333  11111  22234678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027607          161 EKPFLYLARKL  171 (221)
Q Consensus       161 ~~~~~~l~~~l  171 (221)
                      +++..|+....
T Consensus       190 ~~~~~~i~~~~  200 (202)
T COG0378         190 DEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHhhc
Confidence            99999887653

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.5e-09  Score=85.07  Aligned_cols=155  Identities=15%  Similarity=0.048  Sum_probs=106.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      .|+..|.-.-|||||++++.+.... .+.....|++.+...+........+.++|.||++++-...-.-+...|..++|+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV   81 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALLVV   81 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEEEE
Confidence            5788999999999999995544331 133345567766666666656668999999999887665555667889999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ++++.-..+...  .-.+.........++|+||+|..+....+    +..........+++.+|+.+|+|+.++.+.|..
T Consensus        82 ~~deGl~~qtgE--hL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~  159 (447)
T COG3276          82 AADEGLMAQTGE--HLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELID  159 (447)
T ss_pred             eCccCcchhhHH--HHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHH
Confidence            997653222211  11112222345569999999987643222    222222244567899999999999999999998


Q ss_pred             HH
Q 027607          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      ..
T Consensus       160 L~  161 (447)
T COG3276         160 LL  161 (447)
T ss_pred             hh
Confidence            65

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.04  E-value=3e-09  Score=80.87  Aligned_cols=100  Identities=10%  Similarity=0.009  Sum_probs=62.5

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTF  141 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~  141 (221)
                      +.+.|+.|.|--..   -.....-+|.+++|.-..-....+.++.=+-++       -=++|+||.|.............
T Consensus       144 ~DvIIVETVGvGQs---ev~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEi-------aDi~vINKaD~~~A~~a~r~l~~  213 (323)
T COG1703         144 YDVIIVETVGVGQS---EVDIANMADTFLVVMIPGAGDDLQGIKAGIMEI-------ADIIVINKADRKGAEKAARELRS  213 (323)
T ss_pred             CCEEEEEecCCCcc---hhHHhhhcceEEEEecCCCCcHHHHHHhhhhhh-------hheeeEeccChhhHHHHHHHHHH
Confidence            45667777663211   123345678888887776666555554433333       33789999997654333222211


Q ss_pred             H----------hhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          142 H----------RKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       142 ~----------~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      +          ..+..+++.+|+..|+|+.+++..|.+-.
T Consensus       214 al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~  253 (323)
T COG1703         214 ALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHR  253 (323)
T ss_pred             HHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHH
Confidence            1          12345689999999999999999888754

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.03  E-value=6.5e-09  Score=81.52  Aligned_cols=82  Identities=20%  Similarity=0.094  Sum_probs=53.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--------------c--C--cEEEEEEEecCCcc-
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------------N--C--GKIRFYCWDTAGQE-   73 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--------------~--~--~~~~i~~~D~~g~~-   73 (221)
                      .++++|+|.||||||||+|++.....  ...+.+-+|..+.....              .  .  -...+.++|++|.- 
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            37899999999999999999765542  22333333333332211              1  1  13578999998853 


Q ss_pred             ---ccccccccc---cccccEEEEEEECC
Q 027607           74 ---KFGGLRDGY---YIHGQCAIIMFDVT   96 (221)
Q Consensus        74 ---~~~~~~~~~---~~~~d~~i~v~d~~   96 (221)
                         .-.++-..|   ++++|+++-|+++.
T Consensus        80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f  108 (372)
T COG0012          80 GASKGEGLGNKFLDNIREVDAIIHVVRCF  108 (372)
T ss_pred             CcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence               233333333   78899999999987

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=1.8e-08  Score=79.10  Aligned_cols=162  Identities=15%  Similarity=0.266  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCc---------ccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---cccc-
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKK---------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGLR-   79 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---~~~~-   79 (221)
                      .|++.++|++|.|||||+|.|+.......         ...+...........-++-.++++++||||.-+.   ...| 
T Consensus        21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w~  100 (366)
T KOG2655|consen   21 DFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCWR  100 (366)
T ss_pred             ceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccch
Confidence            39999999999999999999887644321         1112233333333344455678999999993211   1111 


Q ss_pred             ---------------------ccccc--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--
Q 027607           80 ---------------------DGYYI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--  134 (221)
Q Consensus        80 ---------------------~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--  134 (221)
                                           +.-+.  .++++++.+..+.. .+..++  +..+...+..+.+|.|+.|+|......  
T Consensus       101 pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~D--i~~Mk~l~~~vNiIPVI~KaD~lT~~El~  177 (366)
T KOG2655|consen  101 PIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLD--IEFMKKLSKKVNLIPVIAKADTLTKDELN  177 (366)
T ss_pred             hhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhh--HHHHHHHhccccccceeeccccCCHHHHH
Confidence                                 11122  45777887776532 122221  223334445889999999999754322  


Q ss_pred             --cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCccc
Q 027607          135 --KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV  180 (221)
Q Consensus       135 --~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~  180 (221)
                        .....+.....++.++.......   +.-+....+.+...-++.+.
T Consensus       178 ~~K~~I~~~i~~~nI~vf~fp~~~~---d~~~~~~~~~l~~~~PFAIi  222 (366)
T KOG2655|consen  178 QFKKRIRQDIEEHNIKVFDFPTDES---DEELKEEEQDLKSSIPFAII  222 (366)
T ss_pred             HHHHHHHHHHHHcCcceecCCCCcc---hhhhHHHHHHHhhcCCeEEE
Confidence              22233455566777666544433   33333334444444444433

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.00  E-value=8.1e-09  Score=76.50  Aligned_cols=48  Identities=15%  Similarity=0.212  Sum_probs=43.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+....+|+|+++.+|++.+.|||+..     +|.+....+.+.++++..+
T Consensus       144 SGGqqQRVAIARAL~~~P~iilADEPTgn-----LD~~t~~~V~~ll~~~~~~  191 (226)
T COG1136         144 SGGQQQRVAIARALINNPKIILADEPTGN-----LDSKTAKEVLELLRELNKE  191 (226)
T ss_pred             CHHHHHHHHHHHHHhcCCCeEEeeCcccc-----CChHHHHHHHHHHHHHHHh
Confidence            46677778899999999999999999999     9999999999999998765

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=98.98  E-value=5.9e-09  Score=80.15  Aligned_cols=54  Identities=20%  Similarity=0.185  Sum_probs=38.4

Q ss_pred             CCCEEEEEeCCCcCCcc--ccHHHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHH
Q 027607          117 NIPIVLCGNKVDVKNRQ--VKAKQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       117 ~~p~ivv~nK~D~~~~~--~~~~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ..+-++|+||+|+....  ...........  ...+++.+|+++|.|++.+..||...
T Consensus       230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            45668999999996521  12222222222  35789999999999999999999774

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.97  E-value=1.6e-09  Score=75.63  Aligned_cols=54  Identities=19%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      +++++|.+|+|||||+|+++..... ......|.+.+...+.++.   .+.+|||||.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~i~DtpG~  138 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKV-SVSATPGKTKHFQTIFLTP---TITLCDCPGL  138 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce-eeCCCCCcccceEEEEeCC---CEEEEECCCc
Confidence            8999999999999999998766543 4556677777766666654   4799999994

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.97  E-value=7.7e-10  Score=81.71  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +.-...|++++..+|++.++|||..+     +.+....++.+.+++++..
T Consensus       154 ~qR~LEIArALa~~P~lLLLDEPaAG-----ln~~e~~~l~~~i~~i~~~  198 (250)
T COG0411         154 QQRRLEIARALATQPKLLLLDEPAAG-----LNPEETEELAELIRELRDR  198 (250)
T ss_pred             HhHHHHHHHHHhcCCCEEEecCccCC-----CCHHHHHHHHHHHHHHHhc
Confidence            33346799999999999999999999     9999999999999999875

>cd01858 NGP_1 NGP-1

Probab=98.97  E-value=2.3e-09  Score=76.20  Aligned_cols=56  Identities=18%  Similarity=0.169  Sum_probs=42.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      +.++|+++|.+|+|||||+|+++... .....+..|+|.....+....   .+.++||||
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~liDtPG  156 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSKK-VCKVAPIPGETKVWQYITLMK---RIYLIDCPG  156 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcCC-ceeeCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence            46899999999999999999976543 445566777777665554432   377999999

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01900 YchF YchF subfamily

Probab=98.97  E-value=1.5e-09  Score=83.36  Aligned_cols=79  Identities=15%  Similarity=0.023  Sum_probs=51.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cCc---------------EEEEEEEecCCcccccc-
Q 027607           16 LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NCG---------------KIRFYCWDTAGQEKFGG-   77 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~i~~~D~~g~~~~~~-   77 (221)
                      |+++|.||||||||+|++.....  ...+.+++|.......+  ...               ...+.++|+||...-.. 
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~~--~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCCC--ccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            58999999999999999665443  33444555544443322  211               12589999999643211 


Q ss_pred             ---ccccc---cccccEEEEEEECC
Q 027607           78 ---LRDGY---YIHGQCAIIMFDVT   96 (221)
Q Consensus        78 ---~~~~~---~~~~d~~i~v~d~~   96 (221)
                         +...+   ++.+|+++.|+|+.
T Consensus        79 ~~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 GEGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             hhHHHHHHHHHHHhCCEEEEEEeCc
Confidence               11222   56899999999974

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.95  E-value=1.7e-09  Score=76.90  Aligned_cols=50  Identities=12%  Similarity=0.119  Sum_probs=44.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      |-+.....|++++...|.+.+.|||+..     +|+....++...+.++...+.+
T Consensus       140 GGEQQRvaIARAiV~~P~vLlADEPTGN-----LDp~~s~~im~lfeeinr~GtT  189 (223)
T COG2884         140 GGEQQRVAIARAIVNQPAVLLADEPTGN-----LDPDLSWEIMRLFEEINRLGTT  189 (223)
T ss_pred             chHHHHHHHHHHHccCCCeEeecCCCCC-----CChHHHHHHHHHHHHHhhcCcE
Confidence            5566668899999999999999999999     9999999999999999887764

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.94  E-value=2.4e-08  Score=74.99  Aligned_cols=48  Identities=27%  Similarity=0.284  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       132 LSgG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~~~~  179 (220)
T cd03293         132 LSGGMRQRVALARALAVDPDVLLLDEPFSA-----LDALTREQLQEELLDIWR  179 (220)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            345556667899999999999999999999     999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.94  E-value=1.4e-08  Score=73.28  Aligned_cols=47  Identities=11%  Similarity=0.177  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....+++++..+|++.++|||..+     +|........+.+++++.+
T Consensus        74 gGq~qrv~laral~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~  120 (177)
T cd03222          74 GGELQRVAIAAALLRNATFYLFDEPSAY-----LDIEQRLNAARAIRRLSEE  120 (177)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4455667899999999999999999999     9999999999999987654

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.94  E-value=4.9e-09  Score=82.21  Aligned_cols=47  Identities=17%  Similarity=0.282  Sum_probs=40.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-+....++++++..+|++.++|||.+.     +|.+-......+++++.++
T Consensus       136 GGQrQRVAlaRAlVr~P~v~L~DEPlSn-----LDa~lR~~mr~ei~~lh~~  182 (338)
T COG3839         136 GGQRQRVALARALVRKPKVFLLDEPLSN-----LDAKLRVLMRSEIKKLHER  182 (338)
T ss_pred             hhhHHHHHHHHHHhcCCCEEEecCchhH-----hhHHHHHHHHHHHHHHHHh
Confidence            4455557899999999999999999999     9998888888888877654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.94  E-value=2.2e-08  Score=78.83  Aligned_cols=49  Identities=24%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+++
T Consensus       140 S~G~~qrl~la~aL~~~P~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~g  188 (306)
T PRK13537        140 SGGMKRRLTLARALVNDPDVLVLDEPTTG-----LDPQARHLMWERLRSLLARG  188 (306)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455557799999999999999999999     99999999999999987654

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.93  E-value=2.2e-08  Score=73.54  Aligned_cols=51  Identities=16%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+-+|-+.....|+++++.+|++.++|||+.+     +.|.-.+++.+.+++++.+
T Consensus       135 G~LSGGEQQMLAiaRALm~~PklLLLDEPs~G-----LaP~iv~~I~~~i~~l~~~  185 (237)
T COG0410         135 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIKELRKE  185 (237)
T ss_pred             cCCChHHHHHHHHHHHHhcCCCEEEecCCccC-----cCHHHHHHHHHHHHHHHHc
Confidence            34457788888999999999999999999999     9999999999999999965

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.93  E-value=4.1e-09  Score=75.76  Aligned_cols=46  Identities=17%  Similarity=0.344  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          162 KPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       162 ~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +....|+++++++|.++++|||+++     +|....+.+.+.+.++.+++.
T Consensus       139 kqkV~iARAlvh~P~i~vlDEP~sG-----LDi~~~r~~~dfi~q~k~egr  184 (245)
T COG4555         139 KQKVAIARALVHDPSILVLDEPTSG-----LDIRTRRKFHDFIKQLKNEGR  184 (245)
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCCCC-----ccHHHHHHHHHHHHHhhcCCc
Confidence            3356899999999999999999999     999999999999999998653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.92  E-value=2.4e-08  Score=79.62  Aligned_cols=49  Identities=27%  Similarity=0.273  Sum_probs=43.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+++
T Consensus       174 S~G~kqrv~lA~aL~~~P~lLiLDEPt~g-----LD~~~r~~l~~~l~~l~~~g  222 (340)
T PRK13536        174 SGGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLARG  222 (340)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455567899999999999999999999     99999999999999987654

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=98.92  E-value=7.7e-08  Score=75.20  Aligned_cols=137  Identities=17%  Similarity=0.309  Sum_probs=80.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCc----------ccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---ccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---GGL   78 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---~~~   78 (221)
                      -.++|.++|++|+|||||+|.|+.......          ..++.........+.-++..+++.++||||.-+.   ...
T Consensus        22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~~  101 (373)
T COG5019          22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSKC  101 (373)
T ss_pred             CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccccc
Confidence            459999999999999999999887633222          1223333344444444566778999999993221   111


Q ss_pred             ccc-----------c------------cc--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           79 RDG-----------Y------------YI--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        79 ~~~-----------~------------~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                      |..           |            +.  .++++++.+..+.- .+..++  +..+...+..+.+|.|+.|+|.--..
T Consensus       102 we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh-~l~~~D--Ie~Mk~ls~~vNlIPVI~KaD~lT~~  178 (373)
T COG5019         102 WEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGH-GLKPLD--IEAMKRLSKRVNLIPVIAKADTLTDD  178 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCC-CCCHHH--HHHHHHHhcccCeeeeeeccccCCHH
Confidence            111           1            11  35777777776532 222222  23333444578899999999964322


Q ss_pred             ----ccHHHHHHHhhcCCeEEE
Q 027607          134 ----VKAKQVTFHRKKNLQYYE  151 (221)
Q Consensus       134 ----~~~~~~~~~~~~~~~~~~  151 (221)
                          ......+.....++++|.
T Consensus       179 El~~~K~~I~~~i~~~nI~vf~  200 (373)
T COG5019         179 ELAEFKERIREDLEQYNIPVFD  200 (373)
T ss_pred             HHHHHHHHHHHHHHHhCCceeC
Confidence                222333455566777664

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.92  E-value=4.1e-09  Score=75.75  Aligned_cols=55  Identities=18%  Similarity=0.226  Sum_probs=43.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      .++++++|.+|+|||||+|++.... .....+.+|+|.....+.++.   .+.++||||
T Consensus       117 ~~~~~~vG~pnvGKSslin~l~~~~-~~~~~~~pg~T~~~~~~~~~~---~~~l~DtPG  171 (172)
T cd04178         117 SITVGVVGFPNVGKSSLINSLKRSR-ACNVGATPGVTKSMQEVHLDK---KVKLLDSPG  171 (172)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcc-cceecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence            4899999999999999999966543 345577788888776666543   478999999

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.92  E-value=2.6e-09  Score=80.31  Aligned_cols=53  Identities=17%  Similarity=0.156  Sum_probs=45.0

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ...++|..  +....|+..+..+|++.++|||+++     +|+...+.+.+.++++..+.
T Consensus       136 p~~LSGGq--kqRvaIA~vLa~~P~iliLDEPta~-----LD~~~~~~l~~~l~~L~~~~  188 (235)
T COG1122         136 PFNLSGGQ--KQRVAIAGVLAMGPEILLLDEPTAG-----LDPKGRRELLELLKKLKEEG  188 (235)
T ss_pred             ccccCCcc--eeeHHhhHHHHcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhcC
Confidence            44444444  4457799999999999999999999     99999999999999998873

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.91  E-value=6e-09  Score=77.04  Aligned_cols=48  Identities=23%  Similarity=0.307  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+...-.|++++..+|++.++|||+++     +|..-+.++.+.+.++.++
T Consensus       143 SGGQ~QRiaIARAL~~~PklLIlDEptSa-----LD~siQa~IlnlL~~l~~~  190 (252)
T COG1124         143 SGGQRQRIAIARALIPEPKLLILDEPTSA-----LDVSVQAQILNLLLELKKE  190 (252)
T ss_pred             ChhHHHHHHHHHHhccCCCEEEecCchhh-----hcHHHHHHHHHHHHHHHHh
Confidence            35566668899999999999999999999     9999999999999988776

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.91  E-value=4.1e-09  Score=78.38  Aligned_cols=48  Identities=23%  Similarity=0.267  Sum_probs=42.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-.+....|++++...|++.++|||..+     +|........+.+.++.++
T Consensus       132 SGGMrQRVaiARAL~~~P~lLLlDEPFgA-----LDalTR~~lq~~l~~lw~~  179 (248)
T COG1116         132 SGGMRQRVAIARALATRPKLLLLDEPFGA-----LDALTREELQDELLRLWEE  179 (248)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEcCCcch-----hhHHHHHHHHHHHHHHHHh
Confidence            46677778999999999999999999999     9999988888888877665

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.91  E-value=5.6e-09  Score=73.81  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      |-+.....|++++...|.+.+.|||+++     +|++-..+..+.++.+++++.+
T Consensus       155 GGQQQR~aIARaLameP~vmLFDEPTSA-----LDPElVgEVLkv~~~LAeEgrT  204 (256)
T COG4598         155 GGQQQRVAIARALAMEPEVMLFDEPTSA-----LDPELVGEVLKVMQDLAEEGRT  204 (256)
T ss_pred             chHHHHHHHHHHHhcCCceEeecCCccc-----CCHHHHHHHHHHHHHHHHhCCe
Confidence            4556668899999999999999999999     9999999999999999998753

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=98.90  E-value=2.6e-09  Score=80.18  Aligned_cols=153  Identities=13%  Similarity=0.124  Sum_probs=92.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC-CcceeeeeeEEEecCcEEEEEEEecCCc----------cccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP-TIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGL   78 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~D~~g~----------~~~~~~   78 (221)
                      ..++..++++|-+|+|||||+|.++..+....... +.|.+.....+.++   -.+.+.|.||-          .++..+
T Consensus       133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~---~~~~~vDlPG~~~a~y~~~~~~d~~~~  209 (320)
T KOG2486|consen  133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG---KSWYEVDLPGYGRAGYGFELPADWDKF  209 (320)
T ss_pred             CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc---ceEEEEecCCcccccCCccCcchHhHh
Confidence            35678999999999999999999776555333232 55544444333333   35778899991          223334


Q ss_pred             cccccccc---cEEEEEEECCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCcCCccc------cHHHH-------HH
Q 027607           79 RDGYYIHG---QCAIIMFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQV------KAKQV-------TF  141 (221)
Q Consensus        79 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~~------~~~~~-------~~  141 (221)
                      ...|+.+-   -.+++++|++.+  ++..+.. +..+.++  ++|..+|+||+|......      .....       ..
T Consensus       210 t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~~~i~~~ge~--~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~  285 (320)
T KOG2486|consen  210 TKSYLLERENLVRVFLLVDASVP--IQPTDNPEIAWLGEN--NVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRG  285 (320)
T ss_pred             HHHHHHhhhhhheeeeeeeccCC--CCCCChHHHHHHhhc--CCCeEEeeehhhhhhhccccccCccccceeehhhcccc
Confidence            44554433   345566666544  3333322 2223332  899999999999643221      11111       11


Q ss_pred             HhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607          142 HRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       142 ~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +.....+++.+|+.++.|++.++..+++
T Consensus       286 ~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q  313 (320)
T KOG2486|consen  286 VFLVDLPWIYVSSVTSLGRDLLLLHIAQ  313 (320)
T ss_pred             ceeccCCceeeecccccCceeeeeehhh
Confidence            2222345677999999999998877766

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.90  E-value=2.2e-08  Score=78.77  Aligned_cols=49  Identities=16%  Similarity=0.200  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       126 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~g  174 (302)
T TIGR01188       126 SGGMRRRLDIAASLIHQPDVLFLDEPTTG-----LDPRTRRAIWDYIRALKEEG  174 (302)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455567799999999999999999999     99999999999999987654

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.90  E-value=5.5e-09  Score=79.81  Aligned_cols=48  Identities=21%  Similarity=0.230  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-++....|+|++..+|++.+.||++++     +||+..+.+.+.+++..++
T Consensus       143 SGGQKQRVaIARALa~~P~iLL~DEaTSA-----LDP~TT~sIL~LL~~In~~  190 (339)
T COG1135         143 SGGQKQRVAIARALANNPKILLCDEATSA-----LDPETTQSILELLKDINRE  190 (339)
T ss_pred             CcchhhHHHHHHHHhcCCCEEEecCcccc-----CChHHHHHHHHHHHHHHHH
Confidence            35566678899999999999999999999     9999999999999988765

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=98.89  E-value=5.5e-10  Score=80.06  Aligned_cols=53  Identities=19%  Similarity=0.214  Sum_probs=46.2

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      .+-+|-+.-...|++++..+|.+.++|||.++     .||-+..++...++.++..++
T Consensus       138 ~sLSGGERRR~EIARaLa~~P~fiLLDEPFAG-----VDPiaV~dIq~iI~~L~~rgi  190 (243)
T COG1137         138 YSLSGGERRRVEIARALAANPKFILLDEPFAG-----VDPIAVIDIQRIIKHLKDRGI  190 (243)
T ss_pred             cccccchHHHHHHHHHHhcCCCEEEecCCccC-----CCchhHHHHHHHHHHHHhCCc
Confidence            33345566668899999999999999999999     999999999999999988764

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=98.88  E-value=4.3e-08  Score=72.24  Aligned_cols=141  Identities=18%  Similarity=0.295  Sum_probs=76.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCc-cc-----CCc-ceeeeeeEEEecCc--EEEEEEEecCCcccc---cccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-YE-----PTI-GVEVHPLDFFTNCG--KIRFYCWDTAGQEKF---GGLR   79 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~-~~-----~~~-~~~~~~~~~~~~~~--~~~i~~~D~~g~~~~---~~~~   79 (221)
                      -.|+|.|+|.+|.|||||+|.+...+.... ..     +.. .+........+..+  ...+.++||||.-+.   ..+|
T Consensus        45 F~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncW  124 (336)
T KOG1547|consen   45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCW  124 (336)
T ss_pred             CceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchh
Confidence            469999999999999999999776444221 11     111 12233333333333  457889999994221   1222


Q ss_pred             cc-----------c------------cc--cccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCC--
Q 027607           80 DG-----------Y------------YI--HGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN--  131 (221)
Q Consensus        80 ~~-----------~------------~~--~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~--  131 (221)
                      ..           |            +.  .++++++.+..+- .++..++ .+++.+.   .-+.++.|+-|+|..-  
T Consensus       125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt---~vvNvvPVIakaDtlTle  200 (336)
T KOG1547|consen  125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLT---EVVNVVPVIAKADTLTLE  200 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHh---hhheeeeeEeecccccHH
Confidence            11           1            21  2566777766653 2333222 2223232   3567788889999532  


Q ss_pred             -c-cccHHHHHHHhhcCCeEEEecccC
Q 027607          132 -R-QVKAKQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus       132 -~-~~~~~~~~~~~~~~~~~~~~s~~~  156 (221)
                       + ...+...+....+++.+++-.+..
T Consensus       201 Er~~FkqrI~~el~~~~i~vYPq~~fd  227 (336)
T KOG1547|consen  201 ERSAFKQRIRKELEKHGIDVYPQDSFD  227 (336)
T ss_pred             HHHHHHHHHHHHHHhcCcccccccccc
Confidence             1 122223344455677766655544

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.88  E-value=5e-08  Score=72.47  Aligned_cols=49  Identities=20%  Similarity=0.216  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.+++
T Consensus       136 S~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  184 (206)
T TIGR03608       136 SGGEQQRVALARAILKDPPLILADEPTGS-----LDPKNRDEVLDLLLELNDEG  184 (206)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCcCC-----CCHHHHHHHHHHHHHHHhcC
Confidence            34455667799999999999999999999     99999999999999886543

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.88  E-value=7.4e-08  Score=71.13  Aligned_cols=49  Identities=22%  Similarity=0.165  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|......+.+.+.+++.++
T Consensus       129 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  177 (198)
T TIGR01189       129 SAGQQRRLALARLWLSRAPLWILDEPTTA-----LDKAGVALLAGLLRAHLARG  177 (198)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455567799999999999999999999     99999999999999876554

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.87  E-value=3.4e-09  Score=73.55  Aligned_cols=50  Identities=18%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      |-+.....|+++++..|.+.+.|||+..     +|++-..++.+.+++++..+.+
T Consensus       144 ggqqqrvaiaralmmkpqvllfdeptaa-----ldpeitaqvv~iikel~~tgit  193 (242)
T COG4161         144 GGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIKELAETGIT  193 (242)
T ss_pred             cchhhhHHHHHHHhcCCcEEeecCcccc-----cCHHHHHHHHHHHHHHHhcCce
Confidence            4455567899999999999999999999     9999999999999999988764

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.87  E-value=4.1e-08  Score=73.57  Aligned_cols=47  Identities=19%  Similarity=0.247  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|+++++.+|++.++|||+++     +|+.....+.+.+++++.
T Consensus       142 S~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~  188 (218)
T cd03255         142 SGGQQQRVAIARALANDPKIILADEPTGN-----LDSETGKEVMELLRELNK  188 (218)
T ss_pred             CHHHHHHHHHHHHHccCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34556667799999999999999999999     999999999999998865

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.87  E-value=6.7e-08  Score=73.16  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++.+++
T Consensus       135 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~  183 (232)
T cd03218         135 SGGERRRVEIARALATNPKFLLLDEPFAG-----VDPIAVQDIQKIIKILKDRG  183 (232)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            44556667899999999999999999999     99999999999999886544

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.87  E-value=1.8e-09  Score=88.73  Aligned_cols=201  Identities=17%  Similarity=0.117  Sum_probs=122.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCC----------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK----------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+.-+|+++-.-.+||||+..+++.-....                ......|++...-...+.+.+.++.++||||+-+
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            355689999999999999999977521110                0111223444444445667788999999999998


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCe--EEEe
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQ--YYEI  152 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~  152 (221)
                      +.--....++-.|++++|+++...---+....|.+.-+.   ++|.+.++||+|........-......+.+.+  ++.+
T Consensus       117 FT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqi  193 (721)
T KOG0465|consen  117 FTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---NVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQI  193 (721)
T ss_pred             EEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhc---CCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEc
Confidence            888888889999999999999876555556666654433   89999999999987665544444444444432  2322


Q ss_pred             cccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCccc
Q 027607          153 SAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDDAF  220 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (221)
                      .    .|.+..|..+...+.. ..++.-.+-... -....-++........-++..-+.+++.||++.
T Consensus       194 P----ig~e~~f~GvvDlv~~-kai~~~g~~g~~-i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~  255 (721)
T KOG0465|consen  194 P----IGSESNFKGVVDLVNG-KAIYWDGENGEI-VRKDEIPEDLEELAEEKRQALIETLADVDETLA  255 (721)
T ss_pred             c----ccccccchhHHhhhhc-eEEEEcCCCCce-eEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence            2    2333355555553322 222221111111 111234455555555666655566666666543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.87  E-value=4e-08  Score=73.57  Aligned_cols=51  Identities=14%  Similarity=0.124  Sum_probs=43.8

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-.|-+.....|++++..+|++.++|||+++     +|......+.+.++++..++
T Consensus       138 ~LSgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  188 (216)
T TIGR00960       138 QLSGGEQQRVAIARAIVHKPPLLLADEPTGN-----LDPELSRDIMRLFEEFNRRG  188 (216)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHCC
Confidence            3345566667899999999999999999999     99999999999999886543

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.87  E-value=6.1e-08  Score=71.90  Aligned_cols=49  Identities=29%  Similarity=0.198  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|........+.+++++.++
T Consensus       131 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  179 (204)
T PRK13538        131 SAGQQRRVALARLWLTRAPLWILDEPFTA-----IDKQGVARLEALLAQHAEQG  179 (204)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455667799999999999999999999     99999999999999876543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.87  E-value=4.2e-08  Score=73.56  Aligned_cols=49  Identities=16%  Similarity=0.225  Sum_probs=42.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.......+.++++.+++
T Consensus       138 S~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~~  186 (218)
T cd03266         138 STGMRQKVAIARALVHDPPVLLLDEPTTG-----LDVMATRALREFIRQLRALG  186 (218)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence            34466667899999999999999999999     99999999999999886554

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.86  E-value=5.5e-09  Score=90.01  Aligned_cols=48  Identities=19%  Similarity=0.200  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-++..-.|+|++..+|++.++|||+++     +|...++.+.+.+.+....
T Consensus       611 SGGQrQrlalARaLl~~P~ILlLDEaTSa-----LD~~sE~~I~~~L~~~~~~  658 (709)
T COG2274         611 SGGQRQRLALARALLSKPKILLLDEATSA-----LDPETEAIILQNLLQILQG  658 (709)
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEeCcccc-----cCHhHHHHHHHHHHHHhcC
Confidence            35577778899999999999999999999     9999999999999987743

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.86  E-value=5.5e-08  Score=76.54  Aligned_cols=49  Identities=27%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       137 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~g  185 (303)
T TIGR01288       137 SGGMKRRLTLARALINDPQLLILDEPTTG-----LDPHARHLIWERLRSLLARG  185 (303)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34556667799999999999999999999     99999999999999987654

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.86  E-value=5.8e-09  Score=82.23  Aligned_cols=54  Identities=22%  Similarity=0.281  Sum_probs=43.8

Q ss_pred             EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          150 YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ...+.++  |-+.....|++++...|++.++|||.++     +|..-..+...+++++..+
T Consensus       132 R~p~qLS--GGQqQRVALARAL~~~P~vLLLDEPlSa-----LD~kLR~~mr~Elk~lq~~  185 (352)
T COG3842         132 RKPHQLS--GGQQQRVALARALVPEPKVLLLDEPLSA-----LDAKLREQMRKELKELQRE  185 (352)
T ss_pred             hChhhhC--hHHHHHHHHHHHhhcCcchhhhcCcccc-----hhHHHHHHHHHHHHHHHHh
Confidence            3345554  4455557899999999999999999999     9999888888888877765

>cd01855 YqeH YqeH

Probab=98.86  E-value=5.2e-09  Score=76.75  Aligned_cols=56  Identities=20%  Similarity=0.256  Sum_probs=43.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccC-------CcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      ..+++++|.+|+|||||+|+++.....       ......+|+|.....+.+..   .+.++||||
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG  189 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG  189 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence            468999999999999999998764421       24456668888887777654   478999999

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.86  E-value=1e-08  Score=75.15  Aligned_cols=49  Identities=22%  Similarity=0.245  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|+++++.+|++.++|||+.+     +|+.......+.++++.+++
T Consensus       129 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~  177 (190)
T TIGR01166       129 SGGEKKRVAIAGAVAMRPDVLLLDEPTAG-----LDPAGREQMLAILRRLRAEG  177 (190)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence            34455667799999999999999999999     99999999999999886554

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.85  E-value=7.3e-08  Score=71.32  Aligned_cols=49  Identities=20%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....+++++..+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       127 S~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g  175 (201)
T cd03231         127 SAGQQRRVALARLLLSGRPLWILDEPTTA-----LDKAGVARFAEAMAGHCARG  175 (201)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455667799999999999999999999     99999999999998876543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.85  E-value=8.1e-08  Score=72.89  Aligned_cols=49  Identities=20%  Similarity=0.272  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++.+++
T Consensus       145 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  193 (236)
T cd03219         145 SYGQQRRLEIARALATDPKLLLLDEPAAG-----LNPEETEELAELIRELRERG  193 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455567799999999999999999999     99999999999999886543

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.85  E-value=9e-08  Score=71.06  Aligned_cols=49  Identities=18%  Similarity=0.188  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.++
T Consensus       128 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  176 (205)
T cd03226         128 SGGQKQRLAIAAALLSGKDLLIFDEPTSG-----LDYKNMERVGELIRELAAQG  176 (205)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHCC
Confidence            45556667899999999999999999999     99999999999999886554

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=98.85  E-value=1.3e-08  Score=82.91  Aligned_cols=70  Identities=19%  Similarity=0.194  Sum_probs=51.5

Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCChh-------hhccHHHHHHHHHhh-----cCCCCEEEEEeCC
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-------TYKNVPTWHRDLCRV-----CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~  127 (221)
                      +...+.++|++|+...+..|.+++.++++++||+++++-.       ....+..-+..+...     ..+.|++|++||.
T Consensus       234 ~~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~  313 (389)
T PF00503_consen  234 GSRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKI  313 (389)
T ss_dssp             TTEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-H
T ss_pred             cccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecH
Confidence            5578899999999999999999999999999999987422       112233333333332     2589999999999


Q ss_pred             Cc
Q 027607          128 DV  129 (221)
Q Consensus       128 D~  129 (221)
                      |+
T Consensus       314 D~  315 (389)
T PF00503_consen  314 DL  315 (389)
T ss_dssp             HH
T ss_pred             HH
Confidence            95

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.84  E-value=5.9e-08  Score=73.62  Aligned_cols=47  Identities=26%  Similarity=0.238  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       138 SgG~~qrv~ia~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  184 (235)
T cd03261         138 SGGMKKRVALARALALDPELLLYDEPTAG-----LDPIASGVIDDLIRSLKK  184 (235)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            45556667799999999999999999999     999999999999998865

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.84  E-value=1.6e-08  Score=74.84  Aligned_cols=72  Identities=13%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             cHHHHHHHhhcCCeEEE---ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          135 KAKQVTFHRKKNLQYYE---ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       135 ~~~~~~~~~~~~~~~~~---~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ..+...|..+..+....   +-.++..+-++  ..+..++.+.|++.++|||.++     +||-.++.+.+.+.++++.+
T Consensus       108 ~~~~~~wLer~~i~~~~~~kIk~LSKGnqQK--IQfisaviHePeLlILDEPFSG-----LDPVN~elLk~~I~~lk~~G  180 (300)
T COG4152         108 QKKLQAWLERLEIVGKKTKKIKELSKGNQQK--IQFISAVIHEPELLILDEPFSG-----LDPVNVELLKDAIFELKEEG  180 (300)
T ss_pred             HHHHHHHHHhccccccccchHHHhhhhhhHH--HHHHHHHhcCCCEEEecCCccC-----CChhhHHHHHHHHHHHHhcC
Confidence            33444455554443222   33334344444  4467789999999999999999     99999999999999999887


Q ss_pred             CC
Q 027607          212 LP  213 (221)
Q Consensus       212 ~~  213 (221)
                      .+
T Consensus       181 at  182 (300)
T COG4152         181 AT  182 (300)
T ss_pred             CE
Confidence            54

>cd01855 YqeH YqeH

Probab=98.84  E-value=1.8e-08  Score=73.95  Aligned_cols=107  Identities=16%  Similarity=0.129  Sum_probs=74.5

Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH-HHHHH-----hhcCC-
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QVTFH-----RKKNL-  147 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~~~~-----~~~~~-  147 (221)
                      +..++..++..+|++++|+|+++...-     |...+.....+.|+++|+||+|+........ ...+.     ...+. 
T Consensus        24 ~~~~l~~~~~~ad~il~VvD~~~~~~~-----~~~~l~~~~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          24 ILNLLSSISPKKALVVHVVDIFDFPGS-----LIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHHHHhcccCCcEEEEEEECccCCCc-----cchhHHHhcCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCC
Confidence            466677789999999999999875421     2222222234789999999999864333222 22222     22222 


Q ss_pred             --eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607          148 --QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       148 --~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                        .++.+|+++|.|+++++..|.+.+.......++-.|..+
T Consensus        99 ~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nvG  139 (190)
T cd01855          99 PKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNVG  139 (190)
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCCC
Confidence              589999999999999999999988766667777776655

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.84  E-value=5.6e-08  Score=72.43  Aligned_cols=49  Identities=12%  Similarity=0.133  Sum_probs=42.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       130 S~G~~qrl~la~al~~~p~~lllDEP~~~-----LD~~~~~~~~~~l~~~~~~~  178 (210)
T cd03269         130 SKGNQQKVQFIAAVIHDPELLILDEPFSG-----LDPVNVELLKDVIRELARAG  178 (210)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455567799999999999999999999     99999999999999876543

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.84  E-value=5.9e-08  Score=72.52  Aligned_cols=50  Identities=14%  Similarity=0.129  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..++
T Consensus       137 LS~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~  186 (214)
T cd03292         137 LSGGEQQRVAIARAIVNSPTILIADEPTGN-----LDPDTTWEIMNLLKKINKAG  186 (214)
T ss_pred             cCHHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHcC
Confidence            345566667899999999999999999999     99999999999999886543

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.84  E-value=6.1e-08  Score=72.38  Aligned_cols=47  Identities=26%  Similarity=0.350  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.
T Consensus       132 SgG~~qrl~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~  178 (213)
T cd03259         132 SGGQQQRVALARALAREPSLLLLDEPLSA-----LDAKLREELREELKELQR  178 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34455567799999999999999999999     999999999999998765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.83  E-value=7.7e-08  Score=71.90  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.+++
T Consensus       138 LS~G~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~  187 (214)
T TIGR02673       138 LSGGEQQRVAIARAIVNSPPLLLADEPTGN-----LDPDLSERILDLLKRLNKRG  187 (214)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence            345566667899999999999999999999     99999999999999876543

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK12289 GTPase RsgA; Reviewed

Probab=98.83  E-value=2.2e-08  Score=79.78  Aligned_cols=92  Identities=15%  Similarity=0.121  Sum_probs=67.1

Q ss_pred             ccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecc
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISA  154 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~  154 (221)
                      ..+.+..+.++|.+++|+|+.++. ....+..|+.....  .+.|+++|+||+|+................++.++.+|+
T Consensus        80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~--~~ip~ILVlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA  157 (352)
T PRK12289         80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES--TGLEIVLCLNKADLVSPTEQQQWQDRLQQWGYQPLFISV  157 (352)
T ss_pred             cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEchhcCChHHHHHHHHHHHhcCCeEEEEEc
Confidence            344455688999999999998765 33345666655432  489999999999986433222333444567889999999


Q ss_pred             cCCCChHHHHHHHHH
Q 027607          155 KSNYNFEKPFLYLAR  169 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~  169 (221)
                      .++.|+++++..|..
T Consensus       158 ~tg~GI~eL~~~L~~  172 (352)
T PRK12289        158 ETGIGLEALLEQLRN  172 (352)
T ss_pred             CCCCCHHHHhhhhcc
Confidence            999999998887764

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=2.4e-08  Score=75.67  Aligned_cols=143  Identities=18%  Similarity=0.133  Sum_probs=91.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc--------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      ..+.++|+.+|.-+-|||||..++..-..              ..+.....|.+.....+.+...+..+...|+||+.+|
T Consensus         9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY   88 (394)
T COG0050           9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY   88 (394)
T ss_pred             CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHH
Confidence            46789999999999999999988553100              0112234466777766777777788899999999877


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcCC--
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKNL--  147 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~~--  147 (221)
                      -...-.-..+.|+.|+|+.+++..--+...  ...+.... ..| +++++||+|+.+...     ..+...+...+++  
T Consensus        89 vKNMItgAaqmDgAILVVsA~dGpmPqTrE--HiLlarqv-Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~g  165 (394)
T COG0050          89 VKNMITGAAQMDGAILVVAATDGPMPQTRE--HILLARQV-GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPG  165 (394)
T ss_pred             HHHHhhhHHhcCccEEEEEcCCCCCCcchh--hhhhhhhc-CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCC
Confidence            544444456789999999999875433321  11222222 554 567789999976322     2233344445443  


Q ss_pred             ---eEEEeccc
Q 027607          148 ---QYYEISAK  155 (221)
Q Consensus       148 ---~~~~~s~~  155 (221)
                         +++.-|++
T Consensus       166 d~~Pii~gSal  176 (394)
T COG0050         166 DDTPIIRGSAL  176 (394)
T ss_pred             CCcceeechhh
Confidence               45666654

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.83  E-value=7.4e-08  Score=71.93  Aligned_cols=49  Identities=18%  Similarity=0.203  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.++
T Consensus       137 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~  185 (213)
T cd03262         137 SGGQQQRVAIARALAMNPKVMLFDEPTSA-----LDPELVGEVLDVMKDLAEEG  185 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHcC
Confidence            34455567799999999999999999999     99999999999999887543

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=5.7e-09  Score=82.53  Aligned_cols=155  Identities=19%  Similarity=0.198  Sum_probs=110.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc--CccCC--------------cccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK--------------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+--+|+|+..-.+||||...+++.  |....              ......|.+...-.+.++++++++.++||||+-+
T Consensus        35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd  114 (753)
T KOG0464|consen   35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD  114 (753)
T ss_pred             hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence            3456899999999999999999764  11100              1122346777778889999999999999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeE--EEe
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQY--YEI  152 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~  152 (221)
                      ++-.....++-.|+++.|||++..-.-+.+..|.+.-.   -+.|.+.++||+|...............+.+.+.  ..+
T Consensus       115 f~leverclrvldgavav~dasagve~qtltvwrqadk---~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~l  191 (753)
T KOG0464|consen  115 FRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADK---FKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQL  191 (753)
T ss_pred             EEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccc---cCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEe
Confidence            98888888999999999999998877777777865422   2789999999999866554444444445555543  223


Q ss_pred             cccCCCChHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLA  168 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~  168 (221)
                      ..-...|..+-|..+.
T Consensus       192 pi~eak~fnkg~ldil  207 (753)
T KOG0464|consen  192 PIGEAKGFNKGFLDIL  207 (753)
T ss_pred             cccccccccchHHHHH
Confidence            3334455544444443

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.82  E-value=1.5e-08  Score=75.51  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=42.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.++
T Consensus       136 SgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~~  184 (211)
T cd03225         136 SGGQKQRVAIAGVLAMDPDILLLDEPTAG-----LDPAGRRELLELLKKLKAEG  184 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence            34455567799999999999999999999     99999999999999887643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=98.82  E-value=1.3e-08  Score=78.04  Aligned_cols=158  Identities=16%  Similarity=0.079  Sum_probs=90.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc--cccccc------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--GGLRDG------   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~--~~~~~~------   81 (221)
                      ..+...|+|+|.+|+|||||+++|......+.-.-....+...+...... +..+-+.||-|.-.-  ..+...      
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHH
Confidence            44556899999999999999999663332221111111111122223332 345677899984211  111111      


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCE----EEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI----VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~----ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~  156 (221)
                      -+..+|.++-|.|++++..-+.....+..+.+.. +..|.    +=|-||.|........+      .  ...+.+|+++
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E------~--n~~v~isalt  325 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE------K--NLDVGISALT  325 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc------c--CCcccccccc
Confidence            2567999999999999865444333333333321 12232    34556777544322221      1  1156799999


Q ss_pred             CCChHHHHHHHHHHHhCCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~  176 (221)
                      |.|++++...+-..+.....
T Consensus       326 gdgl~el~~a~~~kv~~~t~  345 (410)
T KOG0410|consen  326 GDGLEELLKAEETKVASETT  345 (410)
T ss_pred             CccHHHHHHHHHHHhhhhhe
Confidence            99999999888877655443

>cd01859 MJ1464 MJ1464

Probab=98.82  E-value=1.8e-08  Score=71.56  Aligned_cols=93  Identities=12%  Similarity=0.053  Sum_probs=63.3

Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCC
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      +..++++++|++++|+|++++...... .+...+..  .+.|+++|+||+|+.+.........+....+.+++.+|++++
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~~-~l~~~~~~--~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~   81 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRSR-KLERYVLE--LGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKER   81 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCCH-HHHHHHHh--CCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEcccc
Confidence            445667789999999999876543331 22222221  378999999999985432222211233345667899999999


Q ss_pred             CChHHHHHHHHHHHhC
Q 027607          158 YNFEKPFLYLARKLAG  173 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~  173 (221)
                      .|+++++..|.+.+..
T Consensus        82 ~gi~~L~~~l~~~~~~   97 (156)
T cd01859          82 LGTKILRRTIKELAKI   97 (156)
T ss_pred             ccHHHHHHHHHHHHhh
Confidence            9999999999887643

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.82  E-value=9.4e-08  Score=71.11  Aligned_cols=48  Identities=21%  Similarity=0.224  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       129 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  176 (208)
T cd03268         129 LGMKQRLGIALALLGNPDLLILDEPTNG-----LDPDGIKELRELILSLRDQG  176 (208)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            4455567799999999999999999999     99999999999999876543

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.82  E-value=6e-08  Score=76.28  Aligned_cols=52  Identities=17%  Similarity=0.115  Sum_probs=44.6

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ..-+|-+.....|++++...|++.++|||+.+     +|+.....+.+.+++++.++
T Consensus       164 ~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~~~g  215 (305)
T PRK13651        164 FELSGGQKRRVALAGILAMEPDFLVFDEPTAG-----LDPQGVKEILEIFDNLNKQG  215 (305)
T ss_pred             hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence            33445566778899999999999999999999     99999999999999887554

>cd01856 YlqF YlqF

Probab=98.82  E-value=1.6e-08  Score=72.93  Aligned_cols=58  Identities=22%  Similarity=0.212  Sum_probs=44.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      ...++++++|.+|+|||||+|++....+. ......+++.....+.+.   ..+.+|||||.
T Consensus       113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~  170 (171)
T cd01856         113 PRGIRAMVVGIPNVGKSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI  170 (171)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence            34589999999999999999998766553 445566777776666554   34789999994

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.81  E-value=1.2e-07  Score=72.87  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+...+.+.+.++++++++
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~l~~~g  202 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG  202 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            44556667799999999999999999999     99999999999999887654

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.81  E-value=1.4e-07  Score=71.61  Aligned_cols=47  Identities=21%  Similarity=0.287  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|+++++.+|++.++|||..+     +|+.....+.+.++++++
T Consensus       134 S~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  180 (236)
T TIGR03864       134 NGGHRRRVEIARALLHRPALLLLDEPTVG-----LDPASRAAIVAHVRALCR  180 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            44456667799999999999999999999     999999999999998864

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.81  E-value=8.6e-08  Score=71.50  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.++
T Consensus       132 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  179 (211)
T cd03264         132 SGGMRRRVGIAQALVGDPSILIVDEPTAG-----LDPEERIRFRNLLSELGED  179 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHhCC
Confidence            44556667899999999999999999999     9999999999999988653

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.81  E-value=1.1e-07  Score=71.27  Aligned_cols=47  Identities=21%  Similarity=0.220  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+-+.....|+++++..|++.++|||..+     +|+.......+.++++..
T Consensus       135 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  181 (220)
T cd03263         135 SGGMKRKLSLAIALIGGPSVLLLDEPTSG-----LDPASRRAIWDLILEVRK  181 (220)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCCCC-----CCHHHHHHHHHHHHHHhc
Confidence            34455667799999999999999999999     999999999999998765

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.81  E-value=1.1e-07  Score=71.51  Aligned_cols=48  Identities=15%  Similarity=0.111  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       139 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  186 (222)
T PRK10908        139 SGGEQQRVGIARAVVNKPAVLLADEPTGN-----LDDALSEGILRLFEEFNRV  186 (222)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHC
Confidence            35566667899999999999999999999     9999999999999988654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.80  E-value=1.3e-07  Score=68.37  Aligned_cols=48  Identities=23%  Similarity=0.259  Sum_probs=42.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+.....|+++++.+|++.++|||..+     +|........+.++++.+++
T Consensus        98 ~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~~g  145 (173)
T cd03230          98 GGMKQRLALAQALLHDPELLILDEPTSG-----LDPESRREFWELLRELKKEG  145 (173)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence            4455567899999999999999999999     99999999999999987653

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.80  E-value=2.4e-08  Score=77.78  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=67.2

Q ss_pred             ccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCC
Q 027607           80 DGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ...+.++|.+++|+|+.++. ++..+..|+..+..  .++|+++|+||+|+.+..............+.+++.+|++++.
T Consensus        73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~  150 (287)
T cd01854          73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA--AGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGE  150 (287)
T ss_pred             eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH--cCCCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCc
Confidence            44588999999999999887 77777778776654  3799999999999965422222233345567899999999999


Q ss_pred             ChHHHHHHHHH
Q 027607          159 NFEKPFLYLAR  169 (221)
Q Consensus       159 gv~~~~~~l~~  169 (221)
                      |+++++..|..
T Consensus       151 gi~~L~~~L~~  161 (287)
T cd01854         151 GLDELREYLKG  161 (287)
T ss_pred             cHHHHHhhhcc
Confidence            99998877653

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.80  E-value=1.3e-07  Score=70.66  Aligned_cols=47  Identities=19%  Similarity=0.301  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.
T Consensus       132 S~G~~qr~~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  178 (213)
T cd03301         132 SGGQRQRVALGRAIVREPKVFLMDEPLSN-----LDAKLRVQMRAELKRLQQ  178 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            45556667799999999999999999999     999999999999998865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.80  E-value=3.9e-08  Score=71.61  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+.....|++++..+|++.++|||..+     +|+.......+.++++..++
T Consensus       107 ~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~  154 (182)
T cd03215         107 GGNQQKVVLARWLARDPRVLILDEPTRG-----VDVGAKAEIYRLIRELADAG  154 (182)
T ss_pred             HHHHHHHHHHHHHccCCCEEEECCCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence            4455567899999999999999999999     99999999999999886543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.80  E-value=1.1e-07  Score=71.36  Aligned_cols=47  Identities=17%  Similarity=0.278  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-+.....|++++..+|++.++|||..+     +|+.......+.++++..+
T Consensus       134 ~G~~qr~~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  180 (220)
T cd03265         134 GGMRRRLEIARSLVHRPEVLFLDEPTIG-----LDPQTRAHVWEYIEKLKEE  180 (220)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHHh
Confidence            4455567799999999999999999999     9999999999999987654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.80  E-value=8.5e-08  Score=72.63  Aligned_cols=49  Identities=22%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       141 LS~G~~qrv~la~al~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~~  189 (233)
T cd03258         141 LSGGQKQRVGIARALANNPKVLLCDEATSA-----LDPETTQSILALLRDINRE  189 (233)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCCCc-----CCHHHHHHHHHHHHHHHHH
Confidence            344556667899999999999999999999     9999999999999987653

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=8.7e-08  Score=75.83  Aligned_cols=53  Identities=15%  Similarity=0.139  Sum_probs=45.5

Q ss_pred             ccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          154 AKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      ..+-.|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+.+++.++
T Consensus       174 ~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsg-----LD~~~~~~l~~~L~~l~~~g  226 (320)
T PRK13631        174 PFGLSGGQKRRVAIAGILAIQPEILIFDEPTAG-----LDPKGEHEMMQLILDAKANN  226 (320)
T ss_pred             cccCCHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence            334456677778899999999999999999999     99999999999999886554

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=7.9e-08  Score=76.85  Aligned_cols=48  Identities=21%  Similarity=0.232  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.+
T Consensus       142 SgGq~qRv~lAraL~~~p~iLlLDEPts~-----LD~~~~~~l~~~L~~l~~~  189 (343)
T PRK11153        142 SGGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINRE  189 (343)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            45566667899999999999999999999     9999999999999988653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.80  E-value=1.4e-07  Score=71.93  Aligned_cols=47  Identities=15%  Similarity=0.169  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|+++++|||+..     +|+.....+.+.+++++.
T Consensus       117 SgGe~qrv~iaraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  163 (246)
T cd03237         117 SGGELQRVAIAACLSKDADIYLLDEPSAY-----LDVEQRLMASKVIRRFAE  163 (246)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34455567799999999999999999999     999999999999998864

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.80  E-value=4.1e-08  Score=70.18  Aligned_cols=48  Identities=21%  Similarity=0.230  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+.....+++++..+|++.++|||..+     +|....+.+.+.++++.+++
T Consensus        85 ~G~~qrl~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~~~  132 (163)
T cd03216          85 VGERQMVEIARALARNARLLILDEPTAA-----LTPAEVERLFKVIRRLRAQG  132 (163)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence            4445557799999999999999999999     99999999999999886543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.80  E-value=1.2e-07  Score=72.56  Aligned_cols=49  Identities=18%  Similarity=0.198  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++.+++
T Consensus       146 S~Gq~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~  194 (250)
T PRK11264        146 SGGQQQRVAIARALAMRPEVILFDEPTSA-----LDPELVGEVLNTIRQLAQEK  194 (250)
T ss_pred             ChHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhcC
Confidence            34455567799999999999999999999     99999999999999887654

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.80  E-value=5.1e-08  Score=70.30  Aligned_cols=47  Identities=15%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCC--CCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGD--PNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~--~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+  |++.++|||..+     +|......+.+.++++.+.
T Consensus        90 gGq~qrl~laral~~~~~p~llLlDEPt~~-----LD~~~~~~l~~~l~~~~~~  138 (176)
T cd03238          90 GGELQRVKLASELFSEPPGTLFILDEPSTG-----LHQQDINQLLEVIKGLIDL  138 (176)
T ss_pred             HHHHHHHHHHHHHhhCCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhC
Confidence            3345556799999999  999999999999     9999999999999987644

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.80  E-value=1.5e-07  Score=73.51  Aligned_cols=51  Identities=12%  Similarity=0.111  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+|-+.....|++++...|++.++|||+.+     +|+.......+.++++.+++
T Consensus       145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~g-----LD~~~~~~l~~~l~~l~~~g  195 (287)
T PRK13641        145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAG-----LDPEGRKEMMQLFKDYQKAG  195 (287)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhCC
Confidence            3345566677899999999999999999999     99999999999999886544

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=2.5e-08  Score=77.88  Aligned_cols=49  Identities=12%  Similarity=0.183  Sum_probs=42.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|+++++.+|++.++|||+.+     +|+.....+.+.+++++.+
T Consensus       145 LSgGq~qrv~iAraL~~~P~llllDEPt~g-----LD~~~~~~l~~~l~~l~~~  193 (287)
T PRK13637        145 LSGGQKRRVAIAGVVAMEPKILILDEPTAG-----LDPKGRDEILNKIKELHKE  193 (287)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHh
Confidence            345556667899999999999999999999     9999999999999988654

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.79  E-value=1.9e-07  Score=70.84  Aligned_cols=48  Identities=19%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.+
T Consensus       155 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  202 (236)
T cd03267         155 SLGQRMRAEIAAALLHEPEILFLDEPTIG-----LDVVAQENIRNFLKEYNRE  202 (236)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence            34455556799999999999999999999     9999999999999988653

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.79  E-value=2.3e-07  Score=69.84  Aligned_cols=49  Identities=20%  Similarity=0.147  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||..+     +|......+.+.++++..++
T Consensus       126 S~G~~~rv~laral~~~p~llllDEP~~~-----LD~~~~~~l~~~L~~~~~~~  174 (223)
T TIGR03740       126 SLGMKQRLGIAIALLNHPKLLILDEPTNG-----LDPIGIQELRELIRSFPEQG  174 (223)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEECCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455567799999999999999999999     99999999999999886543

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.79  E-value=2.9e-08  Score=80.61  Aligned_cols=50  Identities=18%  Similarity=0.202  Sum_probs=43.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -+|-+.....|++++.++|++.++|||+.+     +|+..+.++.+.++++++++
T Consensus       140 LSgGerQRv~IArAL~~~P~iLLLDEPtsg-----LD~~~~~~l~~lL~~l~~~g  189 (402)
T PRK09536        140 LSGGERQRVLLARALAQATPVLLLDEPTAS-----LDINHQVRTLELVRRLVDDG  189 (402)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            345566678899999999999999999999     99999999999999987654

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.79  E-value=4e-08  Score=68.78  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=42.8

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .-.|-+.....|++.+.-.|.+.++||++++     +|+...+.+++.+.++-.
T Consensus       133 ~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA-----LD~~nkr~ie~mi~~~v~  181 (223)
T COG4619         133 ELSGGEKQRIALIRNLQFMPKILLLDEITSA-----LDESNKRNIEEMIHRYVR  181 (223)
T ss_pred             hccchHHHHHHHHHHhhcCCceEEecCchhh-----cChhhHHHHHHHHHHHhh
Confidence            3456677778999999999999999999999     999999999999887653

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.79  E-value=9.1e-08  Score=76.77  Aligned_cols=49  Identities=12%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||.++     +|......+.+.++++..+
T Consensus       135 LSgGq~QRvalARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  183 (356)
T PRK11650        135 LSGGQRQRVAMGRAIVREPAVFLFDEPLSN-----LDAKLRVQMRLEIQRLHRR  183 (356)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     9999999999999987654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.78  E-value=1.3e-07  Score=66.13  Aligned_cols=42  Identities=33%  Similarity=0.430  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607          161 EKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      +.....|++++..+|++.++|||..+     +|........+.++++
T Consensus        75 ~~~rv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~  116 (144)
T cd03221          75 EKMRLALAKLLLENPNLLLLDEPTNH-----LDLESIEALEEALKEY  116 (144)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHc
Confidence            44456799999999999999999999     9999999999999876

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.78  E-value=2.9e-07  Score=68.81  Aligned_cols=50  Identities=20%  Similarity=0.127  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.+-+.....|++++..+|++.++|||.++     +|+.......+.++++..++
T Consensus       138 LS~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  187 (214)
T PRK13543        138 LSAGQKKRLALARLWLSPAPLWLLDEPYAN-----LDLEGITLVNRMISAHLRGG  187 (214)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence            345566678899999999999999999999     99999999999998876553

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.78  E-value=1.9e-08  Score=81.29  Aligned_cols=73  Identities=12%  Similarity=0.143  Sum_probs=55.1

Q ss_pred             ccHHHHHHHhhcCCeE---EEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          134 VKAKQVTFHRKKNLQY---YEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       134 ~~~~~~~~~~~~~~~~---~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ...+....+.++++++   -.++.++ -| ...+..|.++++.++++.++|||++.     +.+++..++...+++++++
T Consensus       117 ~~~~i~~l~~~yGl~vdp~~~V~dLs-VG-~qQRVEIlKaLyr~a~iLILDEPTaV-----LTP~E~~~lf~~l~~l~~~  189 (501)
T COG3845         117 ARARIKELSERYGLPVDPDAKVADLS-VG-EQQRVEILKALYRGARLLILDEPTAV-----LTPQEADELFEILRRLAAE  189 (501)
T ss_pred             HHHHHHHHHHHhCCCCCccceeecCC-cc-hhHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            3444556667777652   2233332 23 33457899999999999999999999     9999999999999999998


Q ss_pred             CCC
Q 027607          211 PLP  213 (221)
Q Consensus       211 ~~~  213 (221)
                      +.+
T Consensus       190 G~t  192 (501)
T COG3845         190 GKT  192 (501)
T ss_pred             CCE
Confidence            764

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.78  E-value=1.3e-07  Score=72.07  Aligned_cols=47  Identities=26%  Similarity=0.306  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.
T Consensus       137 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~  183 (242)
T cd03295         137 SGGQQQRVGVARALAADPPLLLMDEPFGA-----LDPITRDQLQEEFKRLQQ  183 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34456667799999999999999999999     999999999999998764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.78  E-value=9.9e-08  Score=74.49  Aligned_cols=50  Identities=14%  Similarity=0.151  Sum_probs=43.5

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ..-.|-+.....|+++++.+|++.++|||..+     +|+.....+.+.++++..
T Consensus       144 ~~LSgGq~qrv~laraL~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~l~~  193 (286)
T PRK13646        144 FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG-----LDPQSKRQVMRLLKSLQT  193 (286)
T ss_pred             ccCCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            33445566678899999999999999999999     999999999999998864

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.77  E-value=1.3e-07  Score=71.60  Aligned_cols=47  Identities=19%  Similarity=0.217  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.
T Consensus       147 SgG~~qrl~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~  193 (233)
T PRK11629        147 SGGERQRVAIARALVNNPRLVLADEPTGN-----LDARNADSIFQLLGELNR  193 (233)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            45566667899999999999999999999     999999999999998864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.77  E-value=1.9e-07  Score=69.11  Aligned_cols=49  Identities=14%  Similarity=0.150  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||..+     +|......+.+.++++.+++
T Consensus       129 S~G~~~rv~laral~~~p~~lilDEP~~~-----LD~~~~~~l~~~l~~~~~~~  177 (200)
T PRK13540        129 SSGQKRQVALLRLWMSKAKLWLLDEPLVA-----LDELSLLTIITKIQEHRAKG  177 (200)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHHcC
Confidence            34455667799999999999999999999     99999999999999875543

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.77  E-value=1.3e-07  Score=71.97  Aligned_cols=48  Identities=17%  Similarity=0.230  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g  187 (241)
T PRK10895        140 GGERRRVEIARALAANPKFILLDEPFAG-----VDPISVIDIKRIIEHLRDSG  187 (241)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            4455567799999999999999999999     99999999999888876544

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.77  E-value=1.3e-07  Score=71.06  Aligned_cols=47  Identities=17%  Similarity=0.170  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++..
T Consensus       143 S~G~~qrv~laral~~~p~illlDEPt~~-----LD~~~~~~l~~~l~~~~~  189 (221)
T TIGR02211       143 SGGERQRVAIARALVNQPSLVLADEPTGN-----LDNNNAKIIFDLMLELNR  189 (221)
T ss_pred             CHHHHHHHHHHHHHhCCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            34455567899999999999999999999     999999999999998864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.77  E-value=3.2e-08  Score=77.18  Aligned_cols=58  Identities=21%  Similarity=0.176  Sum_probs=45.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      .+.++++|+|.+|||||||+|++..... ....+.+|+|.....+..+.   .+.++||||.
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPGi  176 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGKKI-AKTGNRPGVTKAQQWIKLGK---GLELLDTPGI  176 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcCCc-cccCCCCCeEEEEEEEEeCC---cEEEEECCCc
Confidence            4568999999999999999999765443 34566788887776665543   4789999996

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.77  E-value=1.8e-07  Score=69.24  Aligned_cols=47  Identities=11%  Similarity=0.071  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|+++++.+|++.++|||..+     +|....+.+.+.++++.++
T Consensus       121 ~Ge~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  167 (202)
T cd03233         121 GGERKRVSIAEALVSRASVLCWDNSTRG-----LDSSTALEILKCIRTMADV  167 (202)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            4455557799999999999999999999     9999999999999988654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.77  E-value=1.2e-07  Score=75.55  Aligned_cols=48  Identities=23%  Similarity=0.241  Sum_probs=42.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++++
T Consensus       142 SgGqkQRV~IARAL~~~P~iLLlDEPts~-----LD~~t~~~i~~lL~~l~~~  189 (343)
T TIGR02314       142 SGGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTQSILELLKEINRR  189 (343)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            34556667899999999999999999999     9999999999999998764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.77  E-value=1.7e-07  Score=73.64  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|++.++|||+.+     +|+.......+.++++.+
T Consensus       136 ~G~~qrv~la~al~~~p~lliLDEPt~g-----LD~~~~~~l~~~l~~~~~  181 (301)
T TIGR03522       136 KGYRQRVGLAQALIHDPKVLILDEPTTG-----LDPNQLVEIRNVIKNIGK  181 (301)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHhcC
Confidence            3345556799999999999999999999     999999999999998864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.76  E-value=1.7e-07  Score=75.36  Aligned_cols=50  Identities=20%  Similarity=0.272  Sum_probs=43.7

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .-+|-+.....|++++..+|++.++|||.++     +|.....+..+.++++.++
T Consensus       137 ~LSgGq~QRvaLARAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  186 (362)
T TIGR03258       137 QLSGGMQQRIAIARAIAIEPDVLLLDEPLSA-----LDANIRANMREEIAALHEE  186 (362)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHh
Confidence            3345566678899999999999999999999     9999999999999988765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=2e-07  Score=71.58  Aligned_cols=46  Identities=24%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      .|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++.
T Consensus       130 SgGq~qrl~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~  175 (255)
T PRK11248        130 SGGQRQRVGIARALAANPQLLLLDEPFGA-----LDAFTREQMQTLLLKLW  175 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHH
Confidence            34455667799999999999999999999     99999999999999874

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.76  E-value=1.9e-07  Score=72.94  Aligned_cols=51  Identities=14%  Similarity=0.115  Sum_probs=43.7

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .-.|-+.....|+++++..|++.++|||+.+     +|+.....+.+.++++++++
T Consensus       144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~g-----LD~~~~~~l~~~l~~l~~~g  194 (288)
T PRK13643        144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAG-----LDPKARIEMMQLFESIHQSG  194 (288)
T ss_pred             cCCHHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence            3345566667899999999999999999999     99999999999999887544

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.76  E-value=1.2e-07  Score=72.71  Aligned_cols=47  Identities=21%  Similarity=0.224  Sum_probs=41.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++..
T Consensus       135 SgGqkqrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~L~~~~~  181 (257)
T PRK11247        135 SGGQKQRVALARALIHRPGLLLLDEPLGA-----LDALTRIEMQDLIESLWQ  181 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            34456667799999999999999999999     999999999999988753

>cd01859 MJ1464 MJ1464

Probab=98.76  E-value=3.2e-08  Score=70.18  Aligned_cols=56  Identities=20%  Similarity=0.223  Sum_probs=41.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      ...+++++|.+|+|||||+|++..+ ....+.++.|.+.....+..+.   .+.+|||||
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG  155 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITS---KIYLLDTPG  155 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence            4578999999999999999997643 3445566777665543333332   589999999

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.76  E-value=9.5e-08  Score=69.32  Aligned_cols=47  Identities=28%  Similarity=0.374  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|++.++|||..+     +|+.....+.+.+++++.+
T Consensus       103 ~G~~qr~~la~al~~~p~llilDEP~~~-----LD~~~~~~l~~~l~~~~~~  149 (178)
T cd03229         103 GGQQQRVALARALAMDPDVLLLDEPTSA-----LDPITRREVRALLKSLQAQ  149 (178)
T ss_pred             HHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            4455567799999999999999999999     9999999999999988765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.76  E-value=2.3e-07  Score=70.12  Aligned_cols=48  Identities=21%  Similarity=0.208  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+...+.+.+.++++..+
T Consensus       116 SgG~~qrv~la~al~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~~~~~  163 (230)
T TIGR01184       116 SGGMKQRVAIARALSIRPKVLLLDEPFGA-----LDALTRGNLQEELMQIWEE  163 (230)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence            34455567799999999999999999999     9999999999999987653

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.76  E-value=2.8e-08  Score=77.08  Aligned_cols=58  Identities=22%  Similarity=0.180  Sum_probs=44.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      .+.++++|+|.+|+|||||+|++..... ......+|+|.....+.+..   .+.++||||.
T Consensus       116 ~~~~~~~~vG~~nvGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtPG~  173 (276)
T TIGR03596       116 NRPIRAMIVGIPNVGKSTLINRLAGKKV-AKVGNRPGVTKGQQWIKLSD---GLELLDTPGI  173 (276)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCc-cccCCCCCeecceEEEEeCC---CEEEEECCCc
Confidence            4568999999999999999999765443 34456777777776665543   4789999996

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.75  E-value=1.6e-07  Score=71.56  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.......+.++++.+++
T Consensus       143 S~G~~qrv~laral~~~p~llilDEPt~~-----LD~~~~~~l~~~l~~~~~~~  191 (242)
T PRK11124        143 SGGQQQRVAIARALMMEPQVLLFDEPTAA-----LDPEITAQIVSIIRELAETG  191 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCCc-----CCHHHHHHHHHHHHHHHHcC
Confidence            44566667899999999999999999999     99999999999999886543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.75  E-value=1.8e-07  Score=69.53  Aligned_cols=49  Identities=24%  Similarity=0.231  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++..++
T Consensus       129 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  177 (207)
T PRK13539        129 SAGQKRRVALARLLVSNRPIWILDEPTAA-----LDAAAVALFAELIRAHLAQG  177 (207)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455667799999999999999999999     99999999999999876554

>COG1161 Predicted GTPases [General function prediction only]

Probab=98.75  E-value=2.4e-08  Score=78.93  Aligned_cols=58  Identities=24%  Similarity=0.267  Sum_probs=48.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      .+.++++|+|.||||||||+|+|++... ....+.+|+|.....+.+..+   +.++||||.
T Consensus       130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~-~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi  187 (322)
T COG1161         130 KRKIRVGVVGYPNVGKSTLINRLLGKKV-AKTSNRPGTTKGIQWIKLDDG---IYLLDTPGI  187 (322)
T ss_pred             ccceEEEEEcCCCCcHHHHHHHHhcccc-eeeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence            4568999999999999999999665544 667888899999888887765   889999994

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.75  E-value=2e-07  Score=72.15  Aligned_cols=48  Identities=19%  Similarity=0.111  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++.++
T Consensus       145 SgGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  192 (269)
T PRK11831        145 SGGMARRAALARAIALEPDLIMFDEPFVG-----QDPITMGVLVKLISELNSA  192 (269)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            34455667799999999999999999999     9999999999999988653

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.75  E-value=8.3e-08  Score=71.67  Aligned_cols=49  Identities=22%  Similarity=0.283  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.++
T Consensus       134 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  182 (213)
T cd03235         134 SGGQQQRVLLARALVQDPDLLLLDEPFAG-----VDPKTQEDIYELLRELRREG  182 (213)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            34455667799999999999999999999     99999999999999887543

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.75  E-value=2.1e-07  Score=69.61  Aligned_cols=47  Identities=34%  Similarity=0.362  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-+.....|++++...|++.++|||+.+     +|....+.+.+.+++++.+
T Consensus       134 ~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  180 (214)
T cd03297         134 GGEKQRVALARALAAQPELLLLDEPFSA-----LDRALRLQLLPELKQIKKN  180 (214)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHH
Confidence            4455667799999999999999999999     9999999999999988653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.74  E-value=2.3e-07  Score=74.49  Aligned_cols=48  Identities=23%  Similarity=0.304  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||.++     +|......+.+.++++..+
T Consensus       130 SgGq~qRvalaraL~~~p~llLLDEPts~-----LD~~~~~~l~~~L~~l~~~  177 (352)
T PRK11144        130 SGGEKQRVAIGRALLTAPELLLMDEPLAS-----LDLPRKRELLPYLERLARE  177 (352)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            45566667899999999999999999999     9999999999999988654

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.74  E-value=1.1e-07  Score=71.54  Aligned_cols=47  Identities=17%  Similarity=0.267  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      |-+.....|++++..+|++.++|||+.+     +|......+.+.++++..+
T Consensus       135 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  181 (222)
T cd03224         135 GGEQQMLAIARALMSRPKLLLLDEPSEG-----LAPKIVEEIFEAIRELRDE  181 (222)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHC
Confidence            4455557799999999999999999999     9999999999999988654

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.74  E-value=3.2e-07  Score=73.75  Aligned_cols=49  Identities=20%  Similarity=0.207  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||.++     +|+.....+.+.++++..+
T Consensus       132 LSgGqkqRvalAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~l~~~  180 (354)
T TIGR02142       132 LSGGEKQRVAIGRALLSSPRLLLMDEPLAA-----LDDPRKYEILPYLERLHAE  180 (354)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEcCCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence            345566677899999999999999999999     9999999999999988764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.74  E-value=1.7e-07  Score=71.96  Aligned_cols=48  Identities=15%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||.++     +|+.....+.+.+.++.++
T Consensus       155 S~G~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~L~~~~~~  202 (255)
T PRK11300        155 AYGQQRRLEIARCMVTQPEILMLDEPAAG-----LNPKETKELDELIAELRNE  202 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccC-----CCHHHHHHHHHHHHHHHhh
Confidence            44555667799999999999999999999     9999999999999988654

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.74  E-value=4.4e-08  Score=72.40  Aligned_cols=43  Identities=23%  Similarity=0.330  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          163 PFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       163 ~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -...|+|++.-+|++.++|||+++     +||-....+.+.++.++..
T Consensus       152 KRvaLARAialdPell~~DEPtsG-----LDPI~a~~~~~LI~~L~~~  194 (263)
T COG1127         152 KRVALARAIALDPELLFLDEPTSG-----LDPISAGVIDELIRELNDA  194 (263)
T ss_pred             HHHHHHHHHhcCCCEEEecCCCCC-----CCcchHHHHHHHHHHHHHh
Confidence            357899999999999999999999     9999999999999988876

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.74  E-value=2.9e-07  Score=71.26  Aligned_cols=47  Identities=23%  Similarity=0.248  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++..
T Consensus       162 S~Gq~qrv~lAral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~  208 (269)
T cd03294         162 SGGMQQRVGLARALAVDPDILLMDEAFSA-----LDPLIRREMQDELLRLQA  208 (269)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            45566667899999999999999999999     999999999999998764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00098 GTPase RsgA; Reviewed

Probab=98.74  E-value=5.5e-08  Score=76.24  Aligned_cols=85  Identities=15%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             ccccccEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~g  159 (221)
                      ...++|.+++|+|+.++.++.. +..|+..+..  .++|+++|+||+|+.+. ....+........+.+++.+|+.++.|
T Consensus        77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~g  154 (298)
T PRK00098         77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEG  154 (298)
T ss_pred             eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence            3589999999999988765444 4566655543  47999999999999632 222233445556678999999999999


Q ss_pred             hHHHHHHHH
Q 027607          160 FEKPFLYLA  168 (221)
Q Consensus       160 v~~~~~~l~  168 (221)
                      +++++..+.
T Consensus       155 i~~L~~~l~  163 (298)
T PRK00098        155 LDELKPLLA  163 (298)
T ss_pred             HHHHHhhcc
Confidence            999887664

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.74  E-value=2.4e-07  Score=74.23  Aligned_cols=51  Identities=22%  Similarity=0.287  Sum_probs=44.1

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ..-.|-+.....|++++..+|++.++|||.++     +|........+.++++..+
T Consensus       133 ~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~  183 (353)
T TIGR03265       133 GQLSGGQQQRVALARALATSPGLLLLDEPLSA-----LDARVREHLRTEIRQLQRR  183 (353)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            34456667778899999999999999999999     9999999999999987654

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.74  E-value=2.2e-07  Score=70.19  Aligned_cols=48  Identities=21%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++...|++.++|||+.+     +|+.....+.+.+++++.+
T Consensus       148 S~Ge~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  195 (228)
T PRK10584        148 SGGEQQRVALARAFNGRPDVLFADEPTGN-----LDRQTGDKIADLLFSLNRE  195 (228)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHh
Confidence            34456667799999999999999999999     9999999999999988643

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=2.5e-07  Score=67.98  Aligned_cols=50  Identities=18%  Similarity=0.165  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +|-++-...|++.++-+|++.++|||.++     +|..+.+.+.+.++++++++.
T Consensus       146 SGGEkKR~EilQ~~~lePkl~ILDE~DSG-----LDIdalk~V~~~i~~lr~~~~  195 (251)
T COG0396         146 SGGEKKRNEILQLLLLEPKLAILDEPDSG-----LDIDALKIVAEGINALREEGR  195 (251)
T ss_pred             CcchHHHHHHHHHHhcCCCEEEecCCCcC-----ccHHHHHHHHHHHHHHhcCCC
Confidence            35566678999999999999999999999     999999999999999998864

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.73  E-value=2.5e-07  Score=70.34  Aligned_cols=47  Identities=21%  Similarity=0.245  Sum_probs=41.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.
T Consensus       138 S~G~~qrl~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  184 (239)
T cd03296         138 SGGQRQRVALARALAVEPKVLLLDEPFGA-----LDAKVRKELRRWLRRLHD  184 (239)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34455667799999999999999999999     999999999999998865

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=8.8e-08  Score=74.21  Aligned_cols=49  Identities=18%  Similarity=0.160  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++...|++.++|||+++     +|......+.+.++++.+++
T Consensus       138 SgG~~qrl~laraL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~g  186 (271)
T PRK13638        138 SHGQKKRVAIAGALVLQARYLLLDEPTAG-----LDPAGRTQMIAIIRRIVAQG  186 (271)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455567799999999999999999999     99999999999999887554

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.73  E-value=2.1e-07  Score=72.74  Aligned_cols=49  Identities=12%  Similarity=0.130  Sum_probs=42.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.+
T Consensus       146 LSgGq~qrv~lAraL~~~P~llllDEPt~~-----LD~~~~~~l~~~L~~l~~~  194 (290)
T PRK13634        146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAG-----LDPKGRKEMMEMFYKLHKE  194 (290)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            344566667899999999999999999999     9999999999999988654

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.7e-07  Score=77.04  Aligned_cols=137  Identities=11%  Similarity=0.153  Sum_probs=83.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      .+|.+-++|+||+|+|||||++.|.............|    +++ .+.++..++++..+|..  ..++ ....+-+|.+
T Consensus        66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~G----PiT-vvsgK~RRiTflEcp~D--l~~m-iDvaKIaDLV  137 (1077)
T COG5192          66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRG----PIT-VVSGKTRRITFLECPSD--LHQM-IDVAKIADLV  137 (1077)
T ss_pred             CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCC----ceE-EeecceeEEEEEeChHH--HHHH-HhHHHhhhee
Confidence            45679999999999999999999765433322222222    112 23457789999999842  3333 3445678999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH--------HHhhcCCeEEEecccC
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT--------FHRKKNLQYYEISAKS  156 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~  156 (221)
                      ++++|.+-.-..+.+  .+..+.....-..++-|++..|+-..........        .....|.++|.+|-..
T Consensus       138 lLlIdgnfGfEMETm--EFLnil~~HGmPrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~  210 (1077)
T COG5192         138 LLLIDGNFGFEMETM--EFLNILISHGMPRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVE  210 (1077)
T ss_pred             EEEeccccCceehHH--HHHHHHhhcCCCceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEecccc
Confidence            999998765333332  2223333333445677889999854332222111        1123477888888654

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.73  E-value=2e-07  Score=74.73  Aligned_cols=49  Identities=22%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||.++     +|........+.++++..+
T Consensus       137 LSgGq~QRvalArAL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~  185 (353)
T PRK10851        137 LSGGQKQRVALARALAVEPQILLLDEPFGA-----LDAQVRKELRRWLRQLHEE  185 (353)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     9999999999999988764

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.73  E-value=3.5e-07  Score=69.92  Aligned_cols=49  Identities=22%  Similarity=0.280  Sum_probs=42.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.+.
T Consensus       145 LSgG~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  193 (247)
T TIGR00972       145 LSGGQQQRLCIARALAVEPEVLLLDEPTSA-----LDPIATGKIEELIQELKKK  193 (247)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhc
Confidence            345566667899999999999999999999     9999999999999987653

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.73  E-value=1.2e-08  Score=76.05  Aligned_cols=48  Identities=23%  Similarity=0.316  Sum_probs=40.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....+++++...|++.++|||..+     +|+-......+.+.++.++
T Consensus       137 SGGQQQRVGv~RALAadP~ilLMDEPFgA-----LDpI~R~~lQ~e~~~lq~~  184 (309)
T COG1125         137 SGGQQQRVGVARALAADPPILLMDEPFGA-----LDPITRKQLQEEIKELQKE  184 (309)
T ss_pred             CcchhhHHHHHHHHhcCCCeEeecCCccc-----cChhhHHHHHHHHHHHHHH
Confidence            35566668899999999999999999999     9998888888887766554

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.73  E-value=2.1e-07  Score=74.73  Aligned_cols=48  Identities=21%  Similarity=0.227  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.....+.+.+.++..
T Consensus       130 LSGGq~QRV~lARAL~~~p~iLLlDEP~sa-----LD~~~r~~l~~~l~~l~~  177 (363)
T TIGR01186       130 LSGGMQQRVGLARALAAEPDILLMDEAFSA-----LDPLIRDSMQDELKKLQA  177 (363)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998864

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=8.7e-08  Score=70.73  Aligned_cols=158  Identities=16%  Similarity=0.182  Sum_probs=90.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc---ccccccccEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR---DGYYIHGQCAI   90 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~---~~~~~~~d~~i   90 (221)
                      .+|+++|...|||||+.+....+.-+.. .-....|.....-.+.+.-+.+.+||.||+-.+-.-.   ...++.+.+++
T Consensus        28 p~ilLMG~rRsGKsSI~KVVFhkMsPne-TlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALi  106 (347)
T KOG3887|consen   28 PRILLMGLRRSGKSSIQKVVFHKMSPNE-TLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGALI  106 (347)
T ss_pred             ceEEEEeecccCcchhhheeeeccCCCc-eeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCeEE
Confidence            5699999999999999987443322111 1011111111111233455789999999985442221   34578899999


Q ss_pred             EEEECCChhhhccHHHHHHHHH---hhcCCCCEEEEEeCCCcCCccccHH-----------HHHHHhhcC--CeEEEecc
Q 027607           91 IMFDVTARLTYKNVPTWHRDLC---RVCENIPIVLCGNKVDVKNRQVKAK-----------QVTFHRKKN--LQYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~---~~~~~~p~ivv~nK~D~~~~~~~~~-----------~~~~~~~~~--~~~~~~s~  154 (221)
                      +|+|+.+.. .+.+..+...+.   ..++++.+-+.+.|.|........+           .+.-....+  +.++-+|.
T Consensus       107 fvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LTSI  185 (347)
T KOG3887|consen  107 FVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLTSI  185 (347)
T ss_pred             EEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEeee
Confidence            999997642 222333332222   2346788889999999643221111           111111122  33555554


Q ss_pred             cCCCChHHHHHHHHHHHhCC
Q 027607          155 KSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~  174 (221)
                      . ...+-+.|..+.+.+.+.
T Consensus       186 y-DHSIfEAFSkvVQkLipq  204 (347)
T KOG3887|consen  186 Y-DHSIFEAFSKVVQKLIPQ  204 (347)
T ss_pred             c-chHHHHHHHHHHHHHhhh
Confidence            4 567788888888876553

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=2.8e-07  Score=73.80  Aligned_cols=49  Identities=16%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|..........++++.++
T Consensus       137 LSgGq~QRVaLARaL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  185 (351)
T PRK11432        137 ISGGQQQRVALARALILKPKVLLFDEPLSN-----LDANLRRSMREKIRELQQQ  185 (351)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     9999999999999988654

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.72  E-value=3e-07  Score=69.96  Aligned_cols=49  Identities=20%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.+++
T Consensus       138 S~G~~qrv~la~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~~~  186 (240)
T PRK09493        138 SGGQQQRVAIARALAVKPKLMLFDEPTSA-----LDPELRHEVLKVMQDLAEEG  186 (240)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHcC
Confidence            34455667799999999999999999999     99999999999999886543

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.72  E-value=1.6e-07  Score=72.91  Aligned_cols=51  Identities=22%  Similarity=0.151  Sum_probs=44.2

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .-.|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.++
T Consensus       138 ~LSgG~~qrv~laraL~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g  188 (274)
T PRK13647        138 HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAY-----LDPRGQETLMEILDRLHNQG  188 (274)
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHCC
Confidence            3445566678899999999999999999999     99999999999999887654

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.72  E-value=2.5e-07  Score=74.65  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|......+.+.++++..+
T Consensus       134 LSgGq~QRvaLAraL~~~P~lLLLDEPts~-----LD~~~~~~l~~~L~~l~~~  182 (369)
T PRK11000        134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHKR  182 (369)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHH
Confidence            345566667899999999999999999999     9999999999999887653

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.72  E-value=8.4e-08  Score=69.28  Aligned_cols=48  Identities=23%  Similarity=0.365  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.....|++++..+|++.++|||..+     +|+.....+.+.+++++.++
T Consensus        99 ~G~~qrv~la~al~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  146 (173)
T cd03246          99 GGQRQRLGLARALYGNPRILVLDEPNSH-----LDVEGERALNQAIAALKAAG  146 (173)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEECCccc-----cCHHHHHHHHHHHHHHHhCC
Confidence            4455567799999999999999999999     99999999999999887654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.72  E-value=7.6e-08  Score=74.32  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=42.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       152 SgGe~qrv~laral~~~p~illLDEPt~~-----LD~~~~~~l~~~l~~~~~~  199 (265)
T TIGR02769       152 SGGQLQRINIARALAVKPKLIVLDEAVSN-----LDMVLQAVILELLRKLQQA  199 (265)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            45566667899999999999999999999     9999999999999988653

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.71  E-value=6.1e-08  Score=73.14  Aligned_cols=48  Identities=25%  Similarity=0.293  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.+++++.+
T Consensus       147 S~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~  194 (228)
T cd03257         147 SGGQRQRVAIARALALNPKLLIADEPTSA-----LDVSVQAQILDLLKKLQEE  194 (228)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHHH
Confidence            34456667799999999999999999999     9999999999999988653

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.71  E-value=5e-08  Score=69.16  Aligned_cols=57  Identities=18%  Similarity=0.182  Sum_probs=41.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      ....+++++|.+|+|||||+|+++.... .......++|.....+.+.   ..+.++||||
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~~~-~~~~~~~~~t~~~~~~~~~---~~~~liDtPG  154 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNKLK-LKVGNVPGTTTSQQEVKLD---NKIKLLDTPG  154 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcccc-ccccCCCCcccceEEEEec---CCEEEEECCC
Confidence            4568899999999999999999665443 2234455666666665554   3588999999

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.71  E-value=1e-07  Score=67.66  Aligned_cols=48  Identities=19%  Similarity=0.205  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....+++++.+..++.++|||.+.     +++.-..+..+.+.++..+
T Consensus       131 SGGqRQRvALARclvR~~PilLLDEPFsA-----LdP~LR~eMl~Lv~~l~~E  178 (231)
T COG3840         131 SGGQRQRVALARCLVREQPILLLDEPFSA-----LDPALRAEMLALVSQLCDE  178 (231)
T ss_pred             CchHHHHHHHHHHHhccCCeEEecCchhh-----cCHHHHHHHHHHHHHHHHh
Confidence            35566678899999999999999999999     9999999999988887655

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=2.7e-07  Score=71.61  Aligned_cols=49  Identities=10%  Similarity=0.025  Sum_probs=42.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|+++++.+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       138 S~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~g  186 (274)
T PRK13644        138 SGGQGQCVALAGILTMEPECLIFDEVTSM-----LDPDSGIAVLERIKKLHEKG  186 (274)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence            34456667799999999999999999999     99999999999999887554

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.70  E-value=2e-07  Score=78.05  Aligned_cols=49  Identities=24%  Similarity=0.238  Sum_probs=43.1

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+|-+.....|++++...|.+.++|||++.     +|.+....++..+.+...
T Consensus       153 ~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNH-----LD~~~i~WLe~~L~~~~g  201 (530)
T COG0488         153 SLSGGWRRRVALARALLEEPDLLLLDEPTNH-----LDLESIEWLEDYLKRYPG  201 (530)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----cCHHHHHHHHHHHHhCCC
Confidence            3456777888999999999999999999999     999999999999986544

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.70  E-value=2.3e-07  Score=74.84  Aligned_cols=49  Identities=22%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||.++     +|+.......+.+.++..+
T Consensus       165 LSgGq~QRV~LARALa~~P~ILLlDEPts~-----LD~~~r~~l~~~L~~l~~~  213 (382)
T TIGR03415       165 LSGGMQQRVGLARAFAMDADILLMDEPFSA-----LDPLIRTQLQDELLELQAK  213 (382)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566667899999999999999999999     9999999999999988653

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.70  E-value=4.9e-07  Score=70.41  Aligned_cols=49  Identities=12%  Similarity=0.140  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.++
T Consensus       147 SgG~~qrv~la~al~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~~  195 (280)
T PRK13649        147 SGGQMRRVAIAGILAMEPKILVLDEPTAG-----LDPKGRKELMTLFKKLHQSG  195 (280)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34456667799999999999999999999     99999999999999886543

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.70  E-value=5.8e-07  Score=67.15  Aligned_cols=48  Identities=19%  Similarity=0.166  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+-+.....|++++...|++.++|||..+     +|......+.+.++++.++
T Consensus       130 S~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~~~~~l~~~~~~  177 (213)
T TIGR01277       130 SGGQRQRVALARCLVRPNPILLLDEPFSA-----LDPLLREEMLALVKQLCSE  177 (213)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            34455667899999999999999999999     9999999999999988653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.70  E-value=7.1e-08  Score=70.11  Aligned_cols=47  Identities=28%  Similarity=0.361  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +-+.....|++++..+|++.++|||..+     +|......+.+.++++..+
T Consensus       100 ~G~~qrl~laral~~~p~llllDEP~~~-----LD~~~~~~~~~~l~~~~~~  146 (180)
T cd03214         100 GGERQRVLLARALAQEPPILLLDEPTSH-----LDIAHQIELLELLRRLARE  146 (180)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHh
Confidence            3345556799999999999999999999     9999999999999987654

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.70  E-value=3.1e-07  Score=68.51  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+-+.....|++++..+|++.++|||.++     +|......+.+.++++..
T Consensus       130 S~G~~qrv~ia~al~~~p~llllDEP~~~-----LD~~~~~~l~~~l~~~~~  176 (211)
T cd03298         130 SGGERQRVALARVLVRDKPVLLLDEPFAA-----LDPALRAEMLDLVLDLHA  176 (211)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34556667899999999999999999999     999999999999998864

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=3.7e-07  Score=69.52  Aligned_cols=47  Identities=21%  Similarity=0.304  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||..+     +|......+.+.+++++.
T Consensus       133 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  179 (241)
T PRK14250        133 SGGEAQRVSIARTLANNPEVLLLDEPTSA-----LDPTSTEIIEELIVKLKN  179 (241)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34455667799999999999999999999     999999999999998765

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.70  E-value=4.6e-07  Score=66.72  Aligned_cols=49  Identities=10%  Similarity=0.108  Sum_probs=40.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .+-+.....|++++..+|++.++|||..+     +|+.......+.+++...++
T Consensus       125 S~G~~~rl~la~al~~~p~~lllDEP~~~-----LD~~~~~~l~~~l~~~~~~~  173 (195)
T PRK13541        125 SSGMQKIVAIARLIACQSDLWLLDEVETN-----LSKENRDLLNNLIVMKANSG  173 (195)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455567799999999999999999999     99999999999987655443

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.70  E-value=2.2e-07  Score=73.88  Aligned_cols=49  Identities=22%  Similarity=0.200  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|+++++.+|++.++|||+++     +|...+.++.+.++++..+
T Consensus       162 LSgG~~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~i~~lL~~l~~~  210 (331)
T PRK15079        162 FSGGQCQRIGIARALILEPKLIICDEPVSA-----LDVSIQAQVVNLLQQLQRE  210 (331)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHHH
Confidence            345566667899999999999999999999     9999999999999988654

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.69  E-value=6.8e-07  Score=68.44  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++...|++.++|||+.+     +|......+.+.++++..
T Consensus       147 LSgG~~qrv~laral~~~p~lllLDEP~~~-----LD~~~~~~l~~~l~~~~~  194 (250)
T PRK14247        147 LSGGQQQRLCIARALAFQPEVLLADEPTAN-----LDPENTAKIESLFLELKK  194 (250)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence            345566667899999999999999999999     999999999999998754

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.69  E-value=7.2e-08  Score=79.12  Aligned_cols=50  Identities=14%  Similarity=0.217  Sum_probs=45.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      .-+..+..|++++..+.++.++|||++.     ++..+...+.+.++++.+++.+
T Consensus       148 iaqrQ~VeIArAl~~~arllIlDEPTaa-----Lt~~E~~~Lf~~ir~Lk~~Gv~  197 (500)
T COG1129         148 IAQRQMVEIARALSFDARVLILDEPTAA-----LTVKETERLFDLIRRLKAQGVA  197 (500)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhCCCE
Confidence            4467778999999999999999999999     9999999999999999998864

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.69  E-value=3.1e-07  Score=74.13  Aligned_cols=48  Identities=19%  Similarity=0.284  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++...|++.++|||.++     +|..........++++..+
T Consensus       146 SgGq~QRVaLARaL~~~P~llLLDEP~s~-----LD~~~r~~l~~~L~~l~~~  193 (375)
T PRK09452        146 SGGQQQRVAIARAVVNKPKVLLLDESLSA-----LDYKLRKQMQNELKALQRK  193 (375)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHHh
Confidence            35566667899999999999999999999     9999999999999988764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.69  E-value=7e-08  Score=72.80  Aligned_cols=48  Identities=25%  Similarity=0.357  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+++     +|......+.+.+++++.+
T Consensus       143 SgG~~qrv~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~  190 (227)
T cd03260         143 SGGQQQRLCLARALANEPEVLLLDEPTSA-----LDPISTAKIEELIAELKKE  190 (227)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHhhC
Confidence            34455667799999999999999999999     9999999999999988764

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.69  E-value=1.5e-07  Score=73.13  Aligned_cols=49  Identities=16%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       138 LS~Gq~qrl~laraL~~~p~llilDEPt~g-----LD~~~~~~l~~~l~~l~~~  186 (277)
T PRK13652        138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAG-----LDPQGVKELIDFLNDLPET  186 (277)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566667899999999999999999999     9999999999999988654

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.69  E-value=7.5e-07  Score=67.90  Aligned_cols=49  Identities=12%  Similarity=0.057  Sum_probs=42.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.++++.+++
T Consensus       146 S~G~~qrl~la~al~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~~  194 (243)
T TIGR01978       146 SGGEKKRNEILQMALLEPKLAILDEIDSG-----LDIDALKIVAEGINRLREPD  194 (243)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            34455667799999999999999999999     99999999999999886543

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.68  E-value=5.9e-07  Score=68.13  Aligned_cols=49  Identities=20%  Similarity=0.310  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++..+|++.++|||+.+     +|........+.++++..+
T Consensus       130 LS~G~~qrl~laral~~~p~llllDEPt~g-----LD~~~~~~l~~~l~~~~~~  178 (235)
T cd03299         130 LSGGEQQRVAIARALVVNPKILLLDEPFSA-----LDVRTKEKLREELKKIRKE  178 (235)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEECCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     9999999999999987653

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.68  E-value=4.4e-07  Score=66.65  Aligned_cols=48  Identities=21%  Similarity=0.248  Sum_probs=41.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.....|++++..+|++.++|||..+     +|........+.++++++++
T Consensus       111 gGe~qrv~la~al~~~p~vlllDEP~~~-----LD~~~~~~l~~~l~~~~~~~  158 (192)
T cd03232         111 VEQRKRLTIGVELAAKPSILFLDEPTSG-----LDSQAAYNIVRFLKKLADSG  158 (192)
T ss_pred             HHHhHHHHHHHHHhcCCcEEEEeCCCcC-----CCHHHHHHHHHHHHHHHHcC
Confidence            4445557799999999999999999999     99999999999999887543

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.68  E-value=3e-07  Score=69.05  Aligned_cols=48  Identities=21%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.+-+.....|++++..+|++.++|||..+     +|......+.+.+++++.
T Consensus       142 lS~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~  189 (220)
T TIGR02982       142 LSGGQKQRVAIARALVHRPKLVLADEPTAA-----LDSKSGRDVVELMQKLAR  189 (220)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCc-----CCHHHHHHHHHHHHHHHH
Confidence            344566667899999999999999999999     999999999999988764

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.68  E-value=3.6e-07  Score=70.67  Aligned_cols=46  Identities=20%  Similarity=0.172  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-+.....|++++..+|++.++|||..+     +|+.....+.+.+.++..
T Consensus       152 ~G~~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~  197 (267)
T PRK15112        152 PGQKQRLGLARALILRPKVIIADEALAS-----LDMSMRSQLINLMLELQE  197 (267)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455567799999999999999999999     999999999999998764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.68  E-value=3e-07  Score=70.50  Aligned_cols=48  Identities=19%  Similarity=0.228  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.++
T Consensus       141 S~G~~qrv~laral~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~~  188 (255)
T cd03236         141 SGGELQRVAIAAALARDADFYFFDEPSSY-----LDIKQRLNAARLIRELAED  188 (255)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence            34456667899999999999999999999     9999999999999988654

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.68  E-value=4.7e-08  Score=82.81  Aligned_cols=47  Identities=28%  Similarity=0.327  Sum_probs=41.8

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+...-.|+|++.++|++.++|||+++     +|.+..+.+.+.+.++..
T Consensus       472 SGGQrQRiaiARall~~~~iliLDE~TSa-----LD~~te~~I~~~l~~~~~  518 (529)
T TIGR02868       472 SGGERQRLALARALLADAPILLLDEPTEH-----LDAGTESELLEDLLAALS  518 (529)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhcC
Confidence            45577778899999999999999999999     999999999999987643

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.68  E-value=7.3e-07  Score=68.59  Aligned_cols=47  Identities=19%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++++
T Consensus       150 S~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  196 (258)
T PRK14241        150 SGGQQQRLCIARAIAVEPDVLLMDEPCSA-----LDPISTLAIEDLINELKQ  196 (258)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHhc
Confidence            44556667899999999999999999999     999999999999998854

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.67  E-value=5.4e-07  Score=66.31  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+.....|++++...|++.++|||..+     +|....+...+.++++.+++
T Consensus       114 ~G~~qrv~laral~~~p~illlDEP~~~-----LD~~~~~~l~~~l~~~~~~~  161 (194)
T cd03213         114 GGERKRVSIALELVSNPSLLFLDEPTSG-----LDSSSALQVMSLLRRLADTG  161 (194)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhCC
Confidence            4455567799999999999999999999     99999999999999887543

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.67  E-value=3.1e-07  Score=77.47  Aligned_cols=51  Identities=14%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.+++++.++
T Consensus       140 ~LSgG~~qrv~la~aL~~~p~lllLDEPt~~-----LD~~~~~~l~~~l~~~~~~g  190 (510)
T PRK15439        140 SLEVADRQIVEILRGLMRDSRILILDEPTAS-----LTPAETERLFSRIRELLAQG  190 (510)
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence            3345566667899999999999999999999     99999999999999987654

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=3.4e-07  Score=74.40  Aligned_cols=47  Identities=21%  Similarity=0.230  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||.++     +|+.....+.+.+.++..
T Consensus       166 SgGq~QRv~LArAL~~~P~iLLLDEPts~-----LD~~~r~~l~~~L~~l~~  212 (400)
T PRK10070        166 SGGMRQRVGLARALAINPDILLMDEAFSA-----LDPLIRTEMQDELVKLQA  212 (400)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            45556667899999999999999999999     999999999999998764

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.67  E-value=1.2e-07  Score=71.74  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=41.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|........+.++++..
T Consensus       127 S~G~~qrv~laral~~~p~vllLDEPt~~-----LD~~~~~~l~~~l~~~~~  173 (230)
T TIGR02770       127 SGGMLQRVMIALALLLEPPFLIADEPTTD-----LDVVNQARVLKLLRELRQ  173 (230)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccc-----cCHHHHHHHHHHHHHHHH
Confidence            34456667799999999999999999999     999999999999998765

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=7e-08  Score=79.68  Aligned_cols=48  Identities=25%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      |-+.....++|++..+.+++++|||+++     +|.+.++.+.+.+.+++++.
T Consensus       459 gGQ~QRlaLARAll~~~~l~llDEpTA~-----LD~etE~~i~~~l~~l~~~k  506 (559)
T COG4988         459 GGQAQRLALARALLSPASLLLLDEPTAH-----LDAETEQIILQALQELAKQK  506 (559)
T ss_pred             HHHHHHHHHHHHhcCCCCEEEecCCccC-----CCHhHHHHHHHHHHHHHhCC
Confidence            4477778899999999999999999999     99999999999999988874

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=6.8e-08  Score=75.11  Aligned_cols=49  Identities=14%  Similarity=0.126  Sum_probs=43.0

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|++++...|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       141 LS~G~~qrv~laral~~~p~lllLDEPt~g-----LD~~~~~~l~~~l~~l~~~  189 (279)
T PRK13635        141 LSGGQKQRVAIAGVLALQPDIIILDEATSM-----LDPRGRREVLETVRQLKEQ  189 (279)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHc
Confidence            345566667899999999999999999999     9999999999999988764

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.66  E-value=6.2e-07  Score=67.56  Aligned_cols=46  Identities=17%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..
T Consensus       140 ~G~~qrv~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~  185 (225)
T PRK10247        140 GGEKQRISLIRNLQFMPKVLLLDEITSA-----LDESNKHNVNEIIHRYVR  185 (225)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            4455567799999999999999999999     999999999999998764

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.66  E-value=1.7e-07  Score=71.90  Aligned_cols=47  Identities=15%  Similarity=0.120  Sum_probs=41.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+.+     +|......+.+.+++++.
T Consensus       142 S~Gq~qrv~laral~~~p~lLlLDEPt~~-----LD~~~~~~l~~~L~~~~~  188 (254)
T PRK10418        142 SGGMLQRMMIALALLCEAPFIIADEPTTD-----LDVVAQARILDLLESIVQ  188 (254)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----cCHHHHHHHHHHHHHHHH
Confidence            34455667799999999999999999999     999999999999998764

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=4.9e-07  Score=73.06  Aligned_cols=50  Identities=22%  Similarity=0.270  Sum_probs=42.7

Q ss_pred             cCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          155 KSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ..-.|-+.....|++++..+|++.++|||.++     +|........+.++++..
T Consensus       148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  197 (377)
T PRK11607        148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGA-----LDKKLRDRMQLEVVDILE  197 (377)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            34456667778899999999999999999999     999999999888877654

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.66  E-value=5.2e-07  Score=67.92  Aligned_cols=50  Identities=20%  Similarity=0.214  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.+-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++..++
T Consensus       150 LS~G~~qrl~laral~~~p~llllDEPt~~-----LD~~~~~~l~~~l~~~~~~g  199 (224)
T TIGR02324       150 FSGGEQQRVNIARGFIADYPILLLDEPTAS-----LDAANRQVVVELIAEAKARG  199 (224)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            344556667899999999999999999999     99999999999999886554

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.66  E-value=7.2e-07  Score=67.95  Aligned_cols=47  Identities=19%  Similarity=0.280  Sum_probs=41.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       145 S~Ge~qrv~laral~~~p~~lllDEPt~~-----LD~~~~~~l~~~l~~~~~  191 (242)
T TIGR03411       145 SHGQKQWLEIGMLLMQDPKLLLLDEPVAG-----MTDEETEKTAELLKSLAG  191 (242)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCccC-----CCHHHHHHHHHHHHHHhc
Confidence            34456667899999999999999999999     999999999999998865

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=2.3e-07  Score=73.63  Aligned_cols=48  Identities=21%  Similarity=0.204  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .|-+.....|++++..+|++.++|||+++     +|...+.++.+.++++..+
T Consensus       155 SgGq~QRv~iArAL~~~P~llilDEPts~-----LD~~~~~~il~lL~~l~~~  202 (326)
T PRK11022        155 SGGMSQRVMIAMAIACRPKLLIADEPTTA-----LDVTIQAQIIELLLELQQK  202 (326)
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHh
Confidence            34555567799999999999999999999     9999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-93
1byu_A	216	Canine Gdp-Ran Length = 216		3e-91
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		2e-90
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		2e-90
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		4e-90
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		8e-90
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		9e-90
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		1e-89
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		1e-89
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		2e-89
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		7e-88
3icq_B	171	Karyopherin Nuclear State Length = 171		6e-83
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		6e-83
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-82
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		2e-81
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		4e-81
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		5e-81
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		2e-43
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		9e-27
1vg1_A	185	Gdp-bound Rab7 Length = 185		1e-26
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		2e-26
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		7e-26
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-23
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		3e-23
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		5e-23
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		6e-23
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-22
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-22
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		4e-22
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		5e-22
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		5e-22
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		6e-22
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		6e-22
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		7e-22
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		7e-22
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		8e-22
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		9e-22
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		1e-21
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		1e-21
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		1e-21
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-21
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-21
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		2e-21
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		2e-21
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		3e-21
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		3e-21
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		4e-21
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		5e-21
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		5e-21
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		9e-21
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		1e-20
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-20
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-20
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		2e-20
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-20
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		3e-20
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		3e-20
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		4e-20
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		5e-20
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		7e-20
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		1e-19
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-19
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		1e-19
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		1e-19
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		1e-19
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		2e-19
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		2e-19
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		2e-19
4fmc_B	171	Espg-Rab1 Complex Length = 171		2e-19
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		2e-19
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		2e-19
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		2e-19
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-19
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		4e-19
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		4e-19
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		5e-19
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		5e-19
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-19
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		7e-19
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		8e-19
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		8e-19
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		9e-19
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		1e-18
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		1e-18
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		1e-18
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-18
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		1e-18
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		2e-18
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-18
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-18
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		5e-18
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		5e-18
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-18
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		5e-18
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		5e-18
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		5e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		5e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		5e-18
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		6e-18
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		8e-18
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		9e-18
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		9e-18
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		9e-18
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		1e-17
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		1e-17
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-17
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		1e-17
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		1e-17
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		1e-17
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		2e-17
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		2e-17
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		2e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		5e-17
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		5e-17
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		5e-17
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		1e-16
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		2e-16
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		2e-16
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-16
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		3e-16
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		3e-16
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		7e-16
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		9e-16
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-15
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		1e-15
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		1e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-15
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		2e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		3e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		3e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		9e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		1e-14
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		1e-14
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		2e-14
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		2e-14
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		2e-14
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		2e-14
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		3e-14
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		4e-14
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-14
1s1c_A	183	Crystal Structure Of The Complex Between The Human		4e-14
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		4e-14
4fmc_F	117	Espg-Rab1 Complex Length = 117		5e-14
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		5e-14
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		6e-14
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-14
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		7e-14
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-14
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		1e-13
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		2e-13
1mh1_A	186	Small G-Protein Length = 186		2e-13
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		2e-13
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		2e-13
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-13
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-13
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		4e-13
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		5e-13
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		5e-13
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		8e-13
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-13
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		8e-13
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		9e-13
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-12
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-12
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-12
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-12
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-12
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		1e-12
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		2e-12
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		3e-12
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		4e-12
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		4e-12
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		4e-12
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		6e-12
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		6e-12
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		6e-12
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		6e-12
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		6e-12
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		7e-12
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		8e-12
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		8e-12
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		1e-11
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		1e-11
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		1e-11
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-11
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-11
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-11
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		3e-11
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		3e-11
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		3e-11
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		3e-11
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		3e-11
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		4e-11
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		4e-11
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		5e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		5e-11
4q21_A	189	Molecular Switch For Signal Transduction: Structura		5e-11
1wq1_R	166	Ras-Rasgap Complex Length = 166		6e-11
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		6e-11
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		6e-11
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-11
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		6e-11
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		7e-11
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		7e-11
6q21_A	171	Molecular Switch For Signal Transduction: Structura		7e-11
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		7e-11
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		9e-11
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		1e-10
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		1e-10
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		1e-10
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		1e-10
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-10
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		1e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-10
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-10
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		2e-10
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		2e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-10
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-10
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-10
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		2e-10
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-10
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		2e-10
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		2e-10
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		2e-10
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		3e-10
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		3e-10
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		4e-10
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		4e-10
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		4e-10
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		5e-10
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		6e-10
4did_A	193	Crystal Structure Of Salmonella Effector N-Terminal		7e-10
1kz7_B	188	Crystal Structure Of The DhPH FRAGMENT OF MURINE DB		8e-10
1doa_A	191	Structure Of The Rho Family Gtp-Binding Protein Cdc		9e-10
1aje_A	194	Cdc42 From Human, Nmr, 20 Structures Length = 194		9e-10
2odb_A	192	The Crystal Structure Of Human Cdc42 In Complex Wit		1e-09
1cee_A	179	Solution Structure Of Cdc42 In Complex With The Gtp		1e-09
2wm9_B	190	Structure Of The Complex Between Dock9 And Cdc42. L		1e-09
1am4_D	177	Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S		1e-09
2qrz_A	189	Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is		1e-09
1grn_A	191	Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.		1e-09
3gcg_A	182	Crystal Structure Of Map And Cdc42 Complex Length =		1e-09
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		1e-09
1an0_A	190	Cdc42hs-Gdp Complex Length = 190		1e-09
2dfk_B	194	Crystal Structure Of The Cdc42-Collybistin Ii Compl		1e-09
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		1e-09
1ees_A	178	Solution Structure Of Cdc42hs Complexed With A Pept		1e-09
3eg5_A	178	Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex W		1e-09
1gzs_A	180	Crystal Structure Of The Complex Between The Gef Do		1e-09
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		1e-09
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		2e-09
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		2e-09
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		2e-09
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		3e-09
3qbv_A	178	Structure Of Designed Orthogonal Interaction Betwee		3e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		3e-09
3vhl_B	195	Crystal Structure Of The Dhr-2 Domain Of Dock8 In C		3e-09
2kb0_A	178	Cdc42(T35a) Length = 178		4e-09
2ase_A	178	Nmr Structure Of The F28l Mutant Of Cdc42hs Length		5e-09
1cf4_A	184	Cdc42ACK GTPASE-Binding Domain Complex Length = 184		5e-09
1nf3_A	195	Structure Of Cdc42 In A Complex With The Gtpase-Bin		8e-09
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		9e-09
1a4r_B	191	G12v Mutant Of Human Placental Cdc42 Gtpase In The		1e-08
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		2e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		2e-07
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		2e-07
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-07
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		3e-07
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-07
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		3e-07
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		2e-06
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		2e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		2e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		2e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		2e-06
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-06
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-06
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		4e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		6e-06
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		9e-06
2h18_A	193	Structure Of Human Adp-Ribosylation Factor-Like 10b		1e-05
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		1e-05
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		2e-05
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-05
1zj6_A	187	Crystal Structure Of Human Arl5 Length = 187		1e-04
1z6y_A	179	Structure Of Human Adp-Ribosylation Factor-Like 5 L		2e-04
3ihw_A	184	Crystal Structure Of The Ras-Like Domain Of Centg3		2e-04
1z6x_A	180	Structure Of Human Adp-Ribosylation Factor 4 Length		3e-04
2h16_A	183	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2h17_A	181	Structure Of Human Adp-Ribosylation Factor-Like 5 (		3e-04
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		4e-04
3dpu_A	535	Roccor Domain Tandem Of Rab Family Protein (Roco) L		4e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		4e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		5e-04
1re0_A	164	Structure Of Arf1-Gdp Bound To Sec7 Domain Complexe		6e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-04
3rd1_A	178	Structure Of An Adp Ribosylation Factor From Entamo		8e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		8e-04
2ksq_A	181	The Myristoylated Yeast Arf1 In A Gtp And Bicelle B		8e-04
1rrg_A	181	Non-Myristoylated Rat Adp-Ribosylation Factor-1 Com		9e-04

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score =  338 bits (868), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 160/208 (76%), Positives = 176/208 (84%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 9   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 68
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 69  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 128
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPE 189
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV SPALAPPE
Sbjct: 129 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFVASPALAPPE 188
Query: 190 VQIDXXXXXXXXXXXXXXXSQPLPDEDD 217
           VQ+D               + PLPDEDD
Sbjct: 189 VQVDEQLMQQYQQEMEQATALPLPDEDD 216

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score =  330 bits (847), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 157/206 (76%), Positives = 170/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/205 (76%), Positives = 169/205 (82%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 194 XXXXXXXXXXXXXXXSQPLPDEDDD 218
                          +  LPDEDDD
Sbjct: 196 PALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score =  328 bits (841), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 156/206 (75%), Positives = 169/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score =  327 bits (837), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 169/206 (82%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EK+GGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score =  326 bits (835), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGL DGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score =  325 bits (834), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P LAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPCLAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 168/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG 
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 155/205 (75%), Positives = 168/205 (81%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGE EKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 16  FKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 76  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 135
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQID 193
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +D
Sbjct: 136 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVMD 195
Query: 194 XXXXXXXXXXXXXXXSQPLPDEDDD 218
                          +  LPDEDDD
Sbjct: 196 PALAAQYEHDLEVAQTTALPDEDDD 220

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score =  324 bits (830), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 155/206 (75%), Positives = 167/206 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAII FDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV  
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAXPALAPPEVVX 189
Query: 193 DXXXXXXXXXXXXXXXSQPLPDEDDD 218
           D               +  LPDEDDD
Sbjct: 190 DPALAAQYEHDLEVAQTTALPDEDDD 215

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score =  319 bits (818), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 165/202 (81%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 3   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 63  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 122
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQI 192
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  PALAPPEV +
Sbjct: 123 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMPALAPPEVVM 182
Query: 193 DXXXXXXXXXXXXXXXSQPLPD 214
           D               +  LPD
Sbjct: 183 DPALAAQYEHDLEVAQTTALPD 204

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score =  303 bits (775), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 1   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 60
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 61  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 120
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 121 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 171

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score =  303 bits (775), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 156/171 (91%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P+FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  TIGVEVHPL F+TN G+I+F  WDT
Sbjct: 2   EVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDT 61
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
           AG EKFGGLRDGYYI+ QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVDV
Sbjct: 62  AGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIPIVLCGNKVDV 121
Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           K R+VKAK +TFHRKKNLQYY+ISAKSNYNFEKPFL+LARKLAG+P L FV
Sbjct: 122 KERKVKAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLAGNPQLEFV 172

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/168 (83%), Positives = 152/168 (90%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY PT+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 177

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score =  298 bits (762), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 151/170 (88%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG E
Sbjct: 13  FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGLE 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 73  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 132
Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 133 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 182

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score =  297 bits (760), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 140/171 (81%), Positives = 151/171 (88%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAG 
Sbjct: 6   QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGL 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 66  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 125
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 183
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV  P
Sbjct: 126 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFVAMP 176

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score =  296 bits (759), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 150/167 (89%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
            FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQ
Sbjct: 10  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQ 69
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           EKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R
Sbjct: 70  EKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 129
Query: 133 QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           +VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL F
Sbjct: 130 KVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEF 176

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score =  172 bits (435), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/185 (47%), Positives = 120/185 (64%), Gaps = 4/185 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAG 71
           ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F  WDTAG
Sbjct: 11  TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAG 70
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVK 130
           QEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V  N  PIV+C NK+D+K
Sbjct: 71  QEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIK 130
Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV +  L P 
Sbjct: 131 NRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVSNVNLEPT 190
Query: 189 EVQID 193
           EV  D
Sbjct: 191 EVNYD 195

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 92/163 (56%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/163 (36%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            +NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 FENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score =  113 bits (283), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 91/163 (55%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAG E
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-----RVCENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ GNK+D
Sbjct: 69  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 128
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           ++NRQV  K  Q   + K N+ Y+E SAK   N E+ F  +AR
Sbjct: 129 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 93/177 (52%), Gaps = 4/177 (2%)
Query: 3   LPNQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           +P     DY   FK+V++G+ G GKT  V+R   G F      TIGV+        N  K
Sbjct: 15  VPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEK 74
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPI 120
           ++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +   N +  
Sbjct: 75  VKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVIT 134
Query: 121 VLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           VL GNK+D+  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L  + 
Sbjct: 135 VLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 58/161 (36%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 9   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T + T+    TW ++L R    +I I L GNK D+ N 
Sbjct: 69  RYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANK 128
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N    FL +A+KL
Sbjct: 129 RMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKL 169

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 85/164 (51%), Gaps = 10/164 (6%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 5   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD---- 128
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D    
Sbjct: 65  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124
Query: 129 --VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
             +KN + +       ++  L++Y  S K + N  + F YLA K
Sbjct: 125 SCIKNEEAEG----LAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/165 (32%), Positives = 87/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 12  FKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK D
Sbjct: 72  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKTD 131
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +K RQV  ++     K N    Y+E SAK + N    F    R++
Sbjct: 132 IKERQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 168

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  101 bits (251), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L    + NI I+L GNK D+++ 
Sbjct: 66  RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K NL + E SA  + N E+ F
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK+D
Sbjct: 68  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 128 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 4   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 64  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 123
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 124 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 10  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++          E+ P V+ GNK+D
Sbjct: 70  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 129
Query: 129 VKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++     + N    Y+E SAK   N    F    R++
Sbjct: 130 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 101/188 (53%), Gaps = 9/188 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 4   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 62
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 63  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVES 182
           NK D+  +R+V   + + F ++  L + E SA +  N E+ F+  ARK+     L+ +ES
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI-----LNKIES 177
Query: 183 PALAPPEV 190
             L P  +
Sbjct: 178 GELDPERM 185

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 7   FKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 67  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 127 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 56/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAGQE
Sbjct: 8   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 68  RYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 127
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F  +A+KL
Sbjct: 128 RAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKL 168

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/166 (34%), Positives = 91/166 (54%), Gaps = 12/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGD   GKT  V+R  TG F ++   TIGV+           +++   WDTAGQE
Sbjct: 30  FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
           +F  +   YY     AI+ +D+T R ++ +VP W  D+ +    NI  +L GNK D+   
Sbjct: 90  RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLS-- 147
Query: 133 QVKAKQVTFHRKKNL-QYYEI------SAKSNYNFEKPFLYLARKL 171
             + ++V+    ++L ++Y+I      SAK + N E+ FL +A +L
Sbjct: 148 --ELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 3/160 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV++GD G GK++ V R +  +F +  E TIG          N   ++F  WDTAGQE+
Sbjct: 14  KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQER 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN-R 132
           +  L   YY     AII+FDVT + +++    W ++L  +   N+ + L GNK D+ + R
Sbjct: 74  YHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDAR 133
Query: 133 QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 134 KVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK D+ N 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V  ++   +   N L + E SAK++ N  + F+ +A+KL
Sbjct: 126 RAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 166

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score = 98.6 bits (244), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/153 (34%), Positives = 82/153 (53%), Gaps = 2/153 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+I+GD G GK++ + R     F   Y  TIGV+        N  K++   WDTAGQE
Sbjct: 10  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L GNK D   R+
Sbjct: 70  RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERK 129
Query: 134 VKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164
           V   +    F  +  +Q +E SAK N N E+ F
Sbjct: 130 VVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE
Sbjct: 21  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 81  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 8/180 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +++G  GTGK+  + + +  +F++    TIGVE            ++   WDTAGQE
Sbjct: 26  FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LCGNK D+   
Sbjct: 86  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEV 190
           R+V   + + F ++  L + E SA +  N E+ FL  AR +     L+ ++S  L P  +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI-----LNKIDSGELDPERM 200

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 97.8 bits (242), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG E
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 55/161 (34%), Positives = 87/161 (54%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV++G+   GK++ V R + G+F +  E TI           +   ++F  WDTAGQE
Sbjct: 6   FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCLDDTTVKFEIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  L   YY   Q AI+++D+T   T+     W ++L R    NI I L GNK D+ + 
Sbjct: 66  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 125
Query: 132 RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           R V+ ++   +   N L + E SAK+  N  + F+ +A+KL
Sbjct: 126 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 97.4 bits (241), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 7/165 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 8   LKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V  R +++N+  W ++          E+ P V+ GNKVD
Sbjct: 68  RFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVLGNKVD 127
Query: 129 VKNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            ++RQV  +  Q       +  Y E SAK + N    F    R++
Sbjct: 128 KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAGQ
Sbjct: 15  TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQ 74
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDVK 130
           E+F  L   YY   Q  I+++DVT R T+  +  W  +L   C    IV  L GNK+D +
Sbjct: 75  ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKIDKE 134
Query: 131 NRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPP 188
           NR+V + + + F RK +  + E SAK+    +  F  L  K+   P L   E+    P 
Sbjct: 135 NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKIIQTPGLWESENQNSGPS 193

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAGQ
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDV-- 129
           E+F  L   YY + Q A++++DVT   ++     W ++L  +  ++I I L GNK+D   
Sbjct: 63  ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 130 ---KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 30  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 89
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 90  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 149
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 150 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 9   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D+++ 
Sbjct: 69  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 128
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 129 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 5   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 63
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 64  IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 89/161 (55%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 11  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++R
Sbjct: 71  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   K+    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 71
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I L GNK D+++ 
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 131
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 94.7 bits (234), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAG E
Sbjct: 6   FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN- 131
           ++  +   YY     A++++D+   LTY+NV  W ++L      NI I L GNK D+++ 
Sbjct: 66  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  K  L + E SA  + N E  F
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + +Y NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 70  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 130 KVVDNTTAKE--FADSLGIPFLETSAKNATNVEQAFMTMAAEI 170

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 93.6 bits (231), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 15  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 74
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   ++     W  D+      ++ I+L GNK D+ + 
Sbjct: 75  RFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 135 RQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV +G+   GKT+ + R     F+  Y+ TIG++      + + G +R   WDTAGQE
Sbjct: 2   YKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      AI+++D+T R +++N   W +D L    +++ I L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGD- 120
Query: 133 QVKAKQVTFH------RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++VT+       ++ N  ++E SAK+ +N +  F   A KL
Sbjct: 121 ---LRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE
Sbjct: 16  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 75
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 76  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 136 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 91/161 (56%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 22  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 81
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 82  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 133 Q-VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + VK ++   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 26  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 86  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 146 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 186

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 3   KTYDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 61
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 62  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 121
Query: 126 KVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKLAGDPNLHF 179
           K DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +    + ++
Sbjct: 122 KCDVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW 177
Query: 180 VESPA 184
             + A
Sbjct: 178 KATAA 182

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 87/163 (53%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 7   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 67  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 127 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 167

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 92/169 (54%), Gaps = 4/169 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
            +T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++  
Sbjct: 2   SETYDFL-FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQ 60
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCG 124
            WDTAG E+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I+LCG
Sbjct: 61  IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 125 NKVDV-KNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  +R+V   + + F ++  L + E SA +  + E+ F+  ARK+
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 4/155 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
           FK+V++GD G GK+  + R    EF  + + TIGVE         N   I+   WDTAGQ
Sbjct: 8   FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN 131
           E++  +   YY     A++++D+T + +++N+  W ++L    + NI I+L GNK D+K+
Sbjct: 68  ERYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKH 127
Query: 132 RQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            +V        + +K+ L + E SA    N E  F
Sbjct: 128 LRVINDNDATQYAKKEKLAFIETSALEATNVELAF 162

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK   + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 17  FKLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 77  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 137 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 91.3 bits (225), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 14/163 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIR 63
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        N            K+ 
Sbjct: 26  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVH 85
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IV
Sbjct: 86  LQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 145
Query: 122 LCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 162
           L GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct: 146 LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     +   Y  TIGV+            ++   WDTAGQE
Sbjct: 10  FKLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKTVKLQIWDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      II++DVT R ++ NV  W +++ R   EN+  +L GNK D+ ++
Sbjct: 70  RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V              +++ E SAK+ YN E+ F  +A ++
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEI 170

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 91.3 bits (225), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 85/161 (52%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 2   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 61
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 62  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 121
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L
Sbjct: 122 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAG E
Sbjct: 14  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 74  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 134 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R    EF    + TIGVE           +I+   WDTAGQE
Sbjct: 14  FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQE 73
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 74  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL 133
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V  ++  TF ++  L + E SA ++ N +K F
Sbjct: 134 RAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           +DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   WD
Sbjct: 3   MDYL-FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GNK 
Sbjct: 62  TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKC 121
Query: 128 DVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
           DV ++    +QV+  R + L      ++ E SAK+N N E  F  LAR +
Sbjct: 122 DVNDK----RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 7   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 67  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 127 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 169

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 11/165 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAGQE
Sbjct: 3   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 63  RFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLADK 122
Query: 133 QVKAKQVTF----HRKKNLQ--YYEISAKSNYNFEKPFLYLARKL 171
               +Q+T      R K L   + E SAK+ YN ++ F  +A  L
Sbjct: 123 ----RQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 85/163 (52%), Gaps = 3/163 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     +R   WDTAG E
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGLE 76
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN- 131
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ + 
Sbjct: 77  RFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 136
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKLAG 173
           RQV  ++     K+ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 137 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 179

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 90.1 bits (222), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 7/162 (4%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+
Sbjct: 1   KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQER 60
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  ++
Sbjct: 61  FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK 120
Query: 134 V----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 121 VVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 160

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/163 (34%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQ 
Sbjct: 31  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQG 90
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK-N 131
           +F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++  
Sbjct: 91  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 132 RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V   +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 151 RDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 191

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 88/162 (54%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/164 (29%), Positives = 90/164 (54%), Gaps = 14/164 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE
Sbjct: 27  LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQE 86
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-N 131
           +F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +
Sbjct: 87  RFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146
Query: 132 RQVK-------AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 168
           R++        A+Q+T      +++ E SAK N+N ++ FL L 
Sbjct: 147 REITRQQGEKFAQQIT-----GMRFCEASAKDNFNVDEIFLKLV 185

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 90/163 (55%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 89.4 bits (220), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 86/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L G K D+  +
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F+ +A ++
Sbjct: 129 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFMTMAAEI 169

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 7/163 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE
Sbjct: 34  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 93
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+  +
Sbjct: 94  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V     AK+  F     + + E SAK+  N E+ F   A ++
Sbjct: 154 KVVDYTTAKE--FADSLGIPFLETSAKNATNVEQSFXTXAAEI 194

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 87/172 (50%), Gaps = 4/172 (2%)
Query: 3   LPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI 62
           +P     DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   +
Sbjct: 12  VPRGSEYDYL-FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTV 70
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-V 121
           +   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R   +  + +
Sbjct: 71  KLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKL 130
Query: 122 LCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D+K+++V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 131 LVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 182

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 89/163 (54%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F  +Y+PTI  + +      +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 132 RQVKAKQVTFHRKK---NLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +  +   N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/156 (28%), Positives = 83/156 (53%), Gaps = 7/156 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE
Sbjct: 6   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 66  RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           +V    + +Q+  H     +++E SAK N N ++ F
Sbjct: 126 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTF 159

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 11  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 71  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 131 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 164

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 53/163 (32%), Positives = 80/163 (49%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 74/154 (48%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++G+ G GKT  + R    EF      TIGVE            ++   WDTAG E
Sbjct: 26  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 85
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN- 131
           ++  +   YY     A+++FD+T   TY  V  W ++L    E  I ++L GNK D+   
Sbjct: 86  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R+V  ++   F     L + E SA  + N E  F
Sbjct: 146 REVPTEEARMFAENNGLLFLETSALDSTNVELAF 179

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 87/163 (53%), Gaps = 4/163 (2%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAG
Sbjct: 10  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG 69
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVK 130
           QE+F  +   YY      ++++DVT + ++ N+  W  ++    + ++ ++L GNKVD  
Sbjct: 70  QERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSA 129
Query: 131 NRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +V  ++      ++  L + E SAK+  N +  F  +A++L
Sbjct: 130 HERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 92/167 (55%), Gaps = 12/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-RFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +   +  K+     WDTAGQ
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNK 126
           E+F  L   +Y    C ++++DVT   +++N+ +W RD   V  N+      P V+ GNK
Sbjct: 69  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNK 127
Query: 127 VDV-KNRQVKAKQVTFHRKKNLQ---YYEISAKSNYNFEKPFLYLAR 169
           +D  +++++ +++      K+L     +  SAK+  N +  F  +AR
Sbjct: 128 IDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 20  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 78
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 79  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 139 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 8   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 68  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 127
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 128 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 165

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 4   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 64  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 123
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 124 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 47/158 (29%), Positives = 82/158 (51%), Gaps = 2/158 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 21  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D++ R
Sbjct: 81  RFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 140
Query: 133 QVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 141 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 178

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score = 86.7 bits (213), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 20  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 79
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 80  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 139
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 140 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 80/164 (48%), Gaps = 14/164 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIR 63
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+ 
Sbjct: 12  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              WDTAG E+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IV
Sbjct: 72  LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 122 LCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
           L GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 132 LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDTAGQE
Sbjct: 9   FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDVKNR 132
           +F  +   YY      II++DVT + ++  V  W +++ R   +  + +L GNK D+K++
Sbjct: 69  RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 133 QVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +V    V   F     + + E SA  + N E  FL +AR++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 6   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 65  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++      + N+ Y E SAK+  N +K F  L R++
Sbjct: 125 RQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 87/161 (54%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE 
Sbjct: 16  KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQED 74
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 75  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 135 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+              ++    WDTAGQ
Sbjct: 6   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNIGGKRVNLAIWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDV-K 130
           E+F  L   YY     AI+++D+T   +++ V  W ++L ++  N I + + GNK+D+ K
Sbjct: 66  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 125
Query: 131 NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 126 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+V++GD G GK+  + R  T EF  + + TIGVE           KI+   WDTAG E
Sbjct: 11  FKIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKKIKAQIWDTAGLE 70
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           ++  +   YY     A+I++D++   +Y+N   W  +L     +N+ + L GNK D+ + 
Sbjct: 71  RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPF 164
           R V   +   F  +  + + E SA ++ N +K F
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++DVT   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 81/168 (48%), Gaps = 9/168 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           ++K+V+ GD   GK++F+ R    EF +    T+GV+        +  +     WDTAGQ
Sbjct: 28  AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQ 87
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN 131
           E+F  +   Y+      ++++DVT   ++ N+  W   +     E +PI+L GNK D+++
Sbjct: 88  ERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147
Query: 132 RQVKAKQVT----FHRKKNLQY----YEISAKSNYNFEKPFLYLARKL 171
                 Q      F  K  + Y     E SAK   N  +  L+LAR++
Sbjct: 148 TAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREV 195

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 81/157 (51%), Gaps = 2/157 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE+
Sbjct: 5   KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER 64
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQ 133
           F  +   YY      I+++D+T   T+ N+  W + +     +   ++L GNK D + R 
Sbjct: 65  FRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDXETRV 124
Query: 134 VKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           V A Q     ++  + + E SAK++ N  + F  LA+
Sbjct: 125 VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK 161

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 86/161 (53%), Gaps = 5/161 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 8   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN- 131
           +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ 
Sbjct: 67  YAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 126
Query: 132 RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
           RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct: 127 RQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 84.0 bits (206), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRF 64
           KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+  
Sbjct: 13  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVL 122
             WDTAG E+F  L   ++      ++ FD+T++ ++ NV  W   L     CEN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVL 132
Query: 123 CGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163
            GNK D+   R+V  +Q      K  + Y+E SA +  N EK 
Sbjct: 133 IGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS 175

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRF 64
           +QQ  +    KLVIVGDG  GKT  +  +  G+F + Y PT+  E +  D   +  ++  
Sbjct: 2   SQQVGNSIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTV-FENYVADVEVDGRRVEL 60
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLC 123
             WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L 
Sbjct: 61  ALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILV 120
Query: 124 GNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPFLYLA 168
           G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F    
Sbjct: 121 GCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFEAAT 180
Query: 169 R 169
           R
Sbjct: 181 R 181

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 87/163 (53%), Gaps = 6/163 (3%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G  G GK+    + + G F +KY+PTI  + +      +  +      DTAG E
Sbjct: 6   YKLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDAQQCMLEILDTAGTE 64
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++
Sbjct: 65  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 132 RQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 167

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 18/171 (10%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 21  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 80
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D+T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 81  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 139
Query: 130 KNRQVKAKQV------TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++    A QV       F    ++  +E SAK+   N + E  F+ LA KL
Sbjct: 140 RS----AIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 7/159 (4%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAG E
Sbjct: 9   FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      I+ +D+T   ++  V  W   +     +N  ++L GNK D ++ 
Sbjct: 69  RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 133 QV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +V    + +Q+  H     +++E SAK N N ++ F  L
Sbjct: 129 RVVSSERGRQLADHL--GFEFFEASAKDNINVKQTFERL 165

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 4/162 (2%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      + +  +++  
Sbjct: 17  QGNFDYM-FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQ 75
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCG 124
            WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L G
Sbjct: 76  IWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVG 135
Query: 125 NKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           NK D++  +V    K      +    ++E SAK N +  + F
Sbjct: 136 NKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 81.3 bits (199), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 17/168 (10%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQ 92
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152
Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                   R+   + VT+HR + +        Y E SA+ + N    F
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 81/154 (52%), Gaps = 3/154 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE
Sbjct: 23  FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQE 82
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNR 132
           ++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ 
Sbjct: 83  RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 133 QVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 164
           +V   +       +L  +++E SAK N N ++ F
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 9   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 68  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 127
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 128 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 86/162 (53%), Gaps = 6/162 (3%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAG E 
Sbjct: 5   KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGLED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN 131
           +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D++ 
Sbjct: 64  YAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEE 123
Query: 132 -RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            RQV  ++     ++  +QY E SAK+  N +K F  L R++
Sbjct: 124 RRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE
Sbjct: 6   LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 66  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 125
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 126 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 84/166 (50%), Gaps = 13/166 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWD 68
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WD
Sbjct: 24  LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIWD 78
Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKV 127
           TAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK 
Sbjct: 79  TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKC 138
Query: 128 DVKN-RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 139 DLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 83/167 (49%), Gaps = 10/167 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 30  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 89
Query: 74  KF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDV 129
           +F   +   YY +    + ++D T   ++ ++P W  + C+   +  +IP +L GNK D+
Sbjct: 90  RFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDL 148
Query: 130 KNR-QVKAKQVT-FHRKKNLQYYEISAKS---NYNFEKPFLYLARKL 171
           ++  QV       F    +   +E SAK+   N + E  F  LA KL
Sbjct: 149 RSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAG 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGARGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 76.6 bits (187), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 77/159 (48%), Gaps = 14/159 (8%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRF 64
           K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I  
Sbjct: 13  KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHL 72
Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVL 122
             WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L      EN  IVL
Sbjct: 73  QLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVL 132
Query: 123 CGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYN 159
           CGNK D+++ R VK ++      K  + Y+E SA +  N
Sbjct: 133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTN 171

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 3/161 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 7   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 66
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN- 131
           +F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + 
Sbjct: 67  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct: 127 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 5   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 63
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 64  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 123
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 124 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 174

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 11  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 69
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 70  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 129
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 130 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 180

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 82/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 74.3 bits (181), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F
Sbjct: 1   LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF 60
Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDV 129
             +   YY      I+++DVT + ++ NV  W +++ R   EN+  +L GNK D+
Sbjct: 61  RTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 74.3 bits (181), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 39/198 (19%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG------------------------ 47
            S+K V++G+   GK++ V R     F +    TIG                        
Sbjct: 6   SSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKN 65
Query: 48  -------------VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD 94
                        +     ++  N   I+F  WDTAGQE++  +   YY    CAI++FD
Sbjct: 66  NNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD 125
Query: 95  VTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FHRKKNLQYYEIS 153
           ++   T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + S
Sbjct: 126 ISNSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTS 184
Query: 154 AKSNYNFEKPFLYLARKL 171
           AK+  N +  F  LA ++
Sbjct: 185 AKTGTNIKNIFYMLAEEI 202

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 73.9 bits (180), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 73.6 bits (179), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 9   KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 68  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 127
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 128 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 178

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 73.6 bits (179), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 10  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E 
Sbjct: 10  KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGLED 68
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 69  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 128
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 129 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 179

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 81/171 (47%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDGACGKTCLLIVNSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 66  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 176

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 124 DKDTIEKLKEKKLT 137

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATR 196

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 7   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 66  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 125
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 126 DKDTIEKLKEKKLT 139

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 8   KLVIVGDVACGKTCLLIVFSKDQFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 66
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 67  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 126
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
              +++   +++ ++               Y E SAK+     + F    R
Sbjct: 127 HTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGD   GKT  +      +F   Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 7   KLVIVGDVACGKTCLLIVFSKDQFPAVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 65
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +   R   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++N +
Sbjct: 66  YDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDE 125
Query: 134 VKAKQVTFHRKKNLQ---------------YYEISAKSNYNFEKPFLYLAR 169
             A+++   +++ ++               Y E SAK+     + F    R
Sbjct: 126 HTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFEMATR 176

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 70.9 bits (172), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/118 (33%), Positives = 62/118 (52%), Gaps = 2/118 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRS 143

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 13  AIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 131
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 132 DKDTIEKLKEKKLT 145

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 70.1 bits (170), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 22  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 81  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 140
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 141 DKDTIEKLKEKKLT 154

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 70/134 (52%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 62/120 (51%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 121

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 68.6 bits (166), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/165 (29%), Positives = 72/165 (43%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQE
Sbjct: 9   IKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTV-FDNFSANVVVNGATVNLGLWDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++ 
Sbjct: 68  DYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127
Query: 133 Q---------VKAKQVTFHRKKNL----QYYEISAKSNYNFEKPF 164
           +         V    V     K L     Y E S+KS  N +  F
Sbjct: 128 KQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/155 (29%), Positives = 76/155 (49%), Gaps = 15/155 (9%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWDTAGQEKFGGLRD 80
           K+    + +   F   Y+PTI       D +T    +     R    DTAGQE+FG +R+
Sbjct: 22  KSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILDTAGQEEFGAMRE 75
Query: 81  GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQV-KA 136
            Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D+++ RQV ++
Sbjct: 76  QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRS 135
Query: 137 KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 136 EASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 73/144 (50%), Gaps = 2/144 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV-FENYIADIEVDGKQVELALWDTAGQED 85
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  LR   Y      ++ F + +  + +N+P  W  ++     N+PI+L GNK D++  +
Sbjct: 86  YDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFXPNVPIILVGNKKDLRQDE 145
Query: 134 VKAKQVTFHRKKNLQYYEISAKSN 157
              +++   +++ ++  E    +N
Sbjct: 146 HTRRELAKMKQEPVRSEEGRDMAN 169

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T     +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNALPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 128
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 129 DKDTIEKLKEKKLT 142

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 6   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 124
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 125 DKDTIEKLKEKKLT 138

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 46/177 (25%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 4   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 122
Query: 132 --------RQVKAKQVTF-------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
                   R  K   +T+           +++Y E SA +    +  F    R + G
Sbjct: 123 DKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDEAIRAVLG 179

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 77/163 (47%), Gaps = 13/163 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 10  IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQE 68
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++ 
Sbjct: 69  DYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128
Query: 133 Q---------VKAKQVTFHRKK--NLQYYEISAKSNYNFEKPF 164
           +         + + Q    RK+     Y E S+K+  N +  F
Sbjct: 129 KGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF 171

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 121
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 122 DKDTIEKLKEKKLT 135

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 7/134 (5%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG 
Sbjct: 30  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGL 88
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 89  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 148
Query: 132 -----RQVKAKQVT 140
                 ++K K++T
Sbjct: 149 DKDTIEKLKEKKLT 162

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +   F   Y+PTI  + +      +    R    DTAGQE+FG +R+ Y   
Sbjct: 18  KSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRT 76
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTF 141
           G+  +++F VT R +++ +  + R + RV   +  P++L GNK D+ + RQV  ++    
Sbjct: 77  GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQL 136
Query: 142 HRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            R+  + Y E SAK   N ++ F  L R
Sbjct: 137 ARQLKVTYMEASAKIRMNVDQAFHELVR 164

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 3   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +++NV   W+ ++   C + PI+L G K+D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPHTPILLVGTKLDLRD 121

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 86/172 (50%), Gaps = 17/172 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG     LDFF           +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG-----LDFFLRRITLPGNLNVTLQIW 61
Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI---PIV-LC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E     P+V L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121
Query: 124 GNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           GNK+D+++ R +K  K + F ++     + +SAK+  +    F  +A ++ G
Sbjct: 122 GNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 79/161 (49%), Gaps = 10/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAG 71
           +++ + G GG GK++ V R + G F + Y PT+      +    +C K        DT G
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV---ISCDKSICTLQITDTTG 60
Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVD 128
             +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK D
Sbjct: 61  SHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCD 120
Query: 129 VK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              +R+V++ +     R     + E SAK N+N ++ F  L
Sbjct: 121 ESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 76/165 (46%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  + +  F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTV-FDNFSANVVVDGNTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PI+L G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDD 125
Query: 133 QV------KAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 164
           +        A  +T ++ + L+       Y E S+K+  N +  F
Sbjct: 126 KQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVF 170

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F +KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVEKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  E +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-ESYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 10  AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 128

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 9   AIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDSKPVNLGLWDTAGQ 67
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F + +  +Y+NV   W  ++   C + PI+L G K+D+++
Sbjct: 68  EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHHCPSTPIILVGTKLDLRD 127

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  KY+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDKYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D   +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DT
Sbjct: 6   DMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDT 64
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV 127
           AGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK 
Sbjct: 65  AGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKC 124
Query: 128 DVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 125 DLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 169

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 15/165 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V VGDG  GKT  +  +    F   Y PT+  +    +   +   +    WDTAGQE
Sbjct: 7   IKCVTVGDGAVGKTCMLISYTGNTFPTDYVPTV-FDNFSANVVVDGSTVNLGLWDTAGQE 65
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + ++ +Y+N+   W  +L      IPIVL G K+D+++ 
Sbjct: 66  DYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDD 125
Query: 133 QV------KAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        A  +T  + + L       +Y E S+K+  N +  F
Sbjct: 126 KQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVF 170

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDEYDPTIEDSYRKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG E
Sbjct: 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGLE 214
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN- 131
            +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L G K+D+++ 
Sbjct: 215 DYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 274
Query: 132 ----RQVKAKQVT 140
                ++K K++T
Sbjct: 275 KDTIEKLKEKKLT 287

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 11  YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 69
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 70  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 129
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 130 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 170

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGEICLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R+ 
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREF 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK     + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKNALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GN+ D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115
Query: 125 NKVDVKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F  +Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPEYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+P+I  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPSIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 10  AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWA 66
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 67  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 125
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +++PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEFDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 12/124 (9%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR-----FYCW 67
           + K+V+VGDG  GKT  +     GE    Y PT+       + F++  K +      + W
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV------FENFSHVMKYKNEEFILHLW 76
Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNK 126
           DTAGQE++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G K
Sbjct: 77  DTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLK 136
Query: 127 VDVK 130
           VD++
Sbjct: 137 VDLR 140

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +   +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK 61
           A+P++   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   
Sbjct: 5   AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWA 61
Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP 119
           I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P
Sbjct: 62  I-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP 120
Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 169
           ++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 121 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTA QE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAAQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTGGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DT GQE
Sbjct: 4   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTTGQE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 83/161 (51%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG+E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGKE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG  G GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 5   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 63
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 64  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPS 123
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 124 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+      +  + N  +   + WDTAGQ
Sbjct: 22  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKN-EEFILHLWDTAGQ 80
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD++
Sbjct: 81  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLR 139

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 61.6 bits (148), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 9   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 67
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 68  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 127
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 128 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETXLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGGE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGLE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGVE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 82/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 4   YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGIE 62
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  
Sbjct: 63  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA 122
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct: 123 RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain Sopb In Complex With Cdc42 Length = 193

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 13  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 71
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 72  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 131
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 132 DPSTIEKLAKNKQKPI 147

>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN Complex With The Placental Isoform Of Human Cdc42 Length = 188

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures Length = 194

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The Crib Domain Of Human P21-Activated Kinase 6 (Pak6) Length = 192

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 4   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 63  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 122
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 123 DPSTIEKLAKNKQKPI 138

>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase Binding Domain Of Wasp Length = 179

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42. Length = 190

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 124 DPSTIEKLAKNKQKPI 139

>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 177

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is Required Length = 189

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX. Length = 191

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex Length = 182

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 126 DPSTIEKLAKNKQK 139

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 80/161 (49%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL GNK D+  
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140
Query: 132 RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     +   + + E SAK+    E  F  L R++
Sbjct: 141 RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREI 181

>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex Length = 190

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 68/146 (46%), Gaps = 22/146 (15%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT----------IGVEVHPLDFFTNCGKI 62
           + K V+VGDG  GKT  +  + T +F  +Y PT          IG E + L  F      
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVXIGGEPYTLGLF------ 56
Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIV 121
                DTAGQE +  LR   Y      ++ F V +  +++NV   W  ++   C   P +
Sbjct: 57  -----DTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFL 111
Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNL 147
           L G ++D+++     +++  +++K +
Sbjct: 112 LVGTQIDLRDDPSTIEKLAKNKQKPI 137

>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 6   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 65  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 124
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 125 DPSTIEKLAKNKQKPI 140

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 76/150 (50%), Gaps = 5/150 (3%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH 85
           K+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +
Sbjct: 16  KSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKN 74
Query: 86  GQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TF 141
           GQ  I+++ +  + +++++      + RV   E +P++L GNKVD+++ +  +       
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134
Query: 142 HRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +    + E SAKS    ++ F  + R++
Sbjct: 135 AEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide Derived From P-21 Activated Kinase, Nmr, 20 Structures Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With Cdc42-Gmppnp Length = 178

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of The Salmonella Typhimurium Sope Toxin And Human Cdc42 Length = 180

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 5   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 63
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 64  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 123
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 124 DPSTIEKLAKNKQK 137

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAG E
Sbjct: 22  YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGHE 80
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           ++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +
Sbjct: 81  EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 140
Query: 132 RQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 141 RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 181

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 26/153 (16%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63
Query: 73  EKFGGLRDGYYIH-------------------GQCAIIMFDVTARLTYKNV-PTWHRDLC 112
           E +  LR   Y                         +I F + +  +++NV   W+ ++ 
Sbjct: 64  EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 113 RVCENIPIVLCGNKVDVKN-----RQVKAKQVT 140
             C N PI+L G K+D+++      ++K K++T
Sbjct: 124 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLT 156

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
           PNQ        K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I 
Sbjct: 23  PNQNV----KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 77
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVL 122
              WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L
Sbjct: 78  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 137
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQY 149
            G K D++       +++ HR+  + Y
Sbjct: 138 VGCKSDLRTDVSTLVELSNHRQTPVSY 164

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 65/147 (44%), Gaps = 6/147 (4%)
Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
           PNQ        K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I 
Sbjct: 18  PNQNV----KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIE 72
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVL 122
              WDT+G   +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L
Sbjct: 73  LSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLL 132
Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQY 149
            G K D++       +++ HR+  + Y
Sbjct: 133 VGCKSDLRTDVSTLVELSNHRQTPVSY 159

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 67
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127
Query: 134 VKAKQVTFHRKKNLQY 149
               +++ HR+  + Y
Sbjct: 128 STLVELSNHRQTPVSY 143

>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42 And Nucleotide Exchange Domains Of Intersectin Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +              DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLRDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 33/174 (18%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT--------IGVEVHPLDFFTNCGKIRFYC 66
           K V+VGDG  GKT+ V  + T  +  +Y PT        + V+  P         +R   
Sbjct: 22  KCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRP---------VRLQL 72
Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGN 125
            DTAGQ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G 
Sbjct: 73  CDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGT 132
Query: 126 KVDV-------------KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
           + D+             K + V  +A ++     K   Y E SA +  N ++ F
Sbjct: 133 QSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex With Cdc42 (T17n Mutant) Length = 195

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GK   +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 10  TIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 68
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 69  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 128
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 129 DPSTIEKLAKNKQKPI 144

>pdb|2KB0|A Chain A, Cdc42(T35a) Length = 178

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y P +  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPAV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs Length = 178

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/134 (24%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +   +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKK 145
                +++  +++K
Sbjct: 122 DPSTIEKLAKNKQK 135

>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex Length = 184

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding Domain Of The Cell Polarity Protein, Par6 Length = 195

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+  + + +             +DTAG 
Sbjct: 7   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGL 65
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 66  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 125
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 126 DPSTIEKLAKNKQKPI 141

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQE
Sbjct: 19  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQE 77
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
            +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 78  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp Form Length = 191

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/136 (24%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGD   GKT  +  + T +F  +Y PT+  + + +             +DTAGQ
Sbjct: 3   TIKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTV-FDNYAVTVMIGGEPYTLGLFDTAGQ 61
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV   W  ++   C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121
Query: 132 RQVKAKQVTFHRKKNL 147
                +++  +++K +
Sbjct: 122 DPSTIEKLAKNKQKPI 137

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 9/148 (6%)
Query: 26  KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGGLRDGYY 83
           K++ V R + G F   Y PTI      +    +C K        DT G  +F  ++    
Sbjct: 21  KSSLVLRFVKGTFRDTYIPTIEDTYRQV---ISCDKSVCTLQITDTTGSHQFPAMQRLSI 77
Query: 84  IHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQV- 139
             G   I++F VT++ + + +   ++ + ++    E+IP++L GNK D   R+V  ++  
Sbjct: 78  SKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQ 137
Query: 140 TFHRKKNLQYYEISAKSNYNFEKPFLYL 167
              ++    + E SAK NYN ++ F  L
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQEL 165

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +EP    + +      +  ++    +D   Q 
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQG 83
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG LRD     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 84  DAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 142
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 143 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 186

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 79/171 (46%), Gaps = 7/171 (4%)
Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFY 65
           Q        KL I G  G GK+  V R LT  F  +Y+PT+    +      +   +   
Sbjct: 21  QSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE-STYRHQATIDDEVVSME 79
Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLC 123
             DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L 
Sbjct: 80  ILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILV 138
Query: 124 GNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISA-KSNYNFEKPFLYLARKL 171
           GNK D+  +RQV  ++      +    +YE SA     N  + F  L R++
Sbjct: 139 GNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 64
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 65  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 124
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 125 MERV----ISYEEGKALAESWNAAFLESSAKEN 153

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/153 (27%), Positives = 70/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 1   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 59
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 60  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 119
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 120 MERV----ISYEEGKALAESWNAAFLESSAKEN 148

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 67/127 (52%), Gaps = 8/127 (6%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW--DTAGQ 72
           K+VI+G    GKT+   + + GEF + Y+PT+    +        GK  F+    DTAGQ
Sbjct: 26  KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE---NTYSKIVTLGKDEFHLHLVDTAGQ 82
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
           +++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK D+ 
Sbjct: 83  DEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLS 142
Query: 131 -NRQVKA 136
             R+V+A
Sbjct: 143 PEREVQA 149

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 69/161 (42%), Gaps = 11/161 (6%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKV----TKGNVTIKIWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   R   +       +L      + IP+++ GNK D+ N
Sbjct: 79  RFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPN 138
Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
                + ++   ++  + + +  Y IS K   N +    +L
Sbjct: 139 ALDEKQLIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%), Gaps = 12/166 (7%)
Query: 15  KLVIVGDGGTGKTTFVKRHLT--GEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTA 70
           K+ +VG+   GK+  +    +   +F K Y  T GVEV   P+        +  +  DTA
Sbjct: 22  KVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTA 81
Query: 71  GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPI--VLCGNK 126
           G + +      Y+     AI++FDV++  ++++   W   L   R     P+  VL  NK
Sbjct: 82  GSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANK 141
Query: 127 VDV--KNRQVKAKQVT-FHRKKNLQYYEISAK-SNYNFEKPFLYLA 168
            D+  +  QV+      +     L ++++SA     + + PFL +A
Sbjct: 142 TDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIA 187

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 13  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 71
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 72  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 131
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 132 STLMELSHQKQAPISY 147

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 12  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 70
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 71  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 130
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 131 STLMELSHQKQAPISY 146

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G   
Sbjct: 29  KLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV-FENYTACLETEEQRVELSLWDTSGSPY 87
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      ++ FD++   T  + +  W  ++   C +  ++L G K D++   
Sbjct: 88  YDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDL 147
Query: 134 VKAKQVTFHRKKNLQY 149
               +++  ++  + Y
Sbjct: 148 STLMELSHQKQAPISY 163

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 69/153 (45%), Gaps = 13/153 (8%)
Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F    +PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62
Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVK 130
           +++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122
Query: 131 NRQVKAKQVTFHRKK------NLQYYEISAKSN 157
             +V    +++   K      N  + E SAK N
Sbjct: 123 MERV----ISYEEGKALAESWNAAFLESSAKEN 151

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F  K    + E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRXREVSVSEGRAXAVVFDXK----FIETSAAVQHNVKELFEGIVRQV 170

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK+++VG+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 62
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 63  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 121
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 122 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 13/162 (8%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 78
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 79  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 137
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
               +   ++   ++  + + +  Y IS K   N +    +L
Sbjct: 138 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWL 179

>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b (Arl10b) Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 72/164 (43%), Gaps = 13/164 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 32  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 87
Query: 74  KFGGLRDGYYIHGQCAII-MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDV- 129
           +F  + +  Y  G  AI+ M D   +   +       +L      + IP+++ GNK D+ 
Sbjct: 88  RFRSMWE-RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLP 146
Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
               +   ++   ++  + + +  Y IS K   N +    +L +
Sbjct: 147 GALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 190

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/167 (22%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++G+ G GK+T        + +  +E     + +      +  ++    +D   Q 
Sbjct: 13  FKVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQG 72
Query: 74  KFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVK 130
             GG L+D     G   +I+F VT R ++  VP     L   R   ++P++L GNK D+ 
Sbjct: 73  DAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDL- 131
Query: 131 NRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 171
               ++++V+    ++L      ++ E SA  ++N  + F    R++
Sbjct: 132 ---ARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 91
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 201

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 30/176 (17%)
Query: 14  FKLVIVGDGGTGKTT----FVKRHLTGEF------EKKYEPTIGVEVHPLDFFTNCGKIR 63
           +++V++G+ G GK+T    F   H + +       E  YE T+ V+            I 
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATI------IL 60
Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L   R  E+IPI+
Sbjct: 61  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 118
Query: 122 LCGNKVD-VKNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           L GNK D V+ R+V     +A  V F    + ++ E SA   +N ++ F  + R++
Sbjct: 119 LVGNKSDLVRCREVSVSEGRACAVVF----DCKFIETSAAVQHNVKELFEGIVRQV 170

>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5 Length = 187

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 Length = 179

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 54/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           ++   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 13  NHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 67
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 68  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 121
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 122 IFANKQDVK 130

>pdb|3IHW|A Chain A, Crystal Structure Of The Ras-Like Domain Of Centg3 Length = 184

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 40/172 (23%), Positives = 75/172 (43%), Gaps = 20/172 (11%)
Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G      +   +         D  G
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGG 76
Query: 72  --QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNK- 126
             + +F    D         + +F +   ++++ V  +   LC  R    +P+VL G + 
Sbjct: 77  PPELQFAAWVD-------AVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQD 129
Query: 127 -VDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +   N +V    +A++++   K+   YYE  A    N E+ F  +A+K+  
Sbjct: 130 AISAANPRVIDDSRARKLSTDLKR-CTYYETCATYGLNVERVFQDVAQKVVA 180

>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4 Length = 180

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 7/120 (5%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++   C    F  WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEYKNIC----FTVWDVGGQD 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           +   L   Y+ + Q  I + D   R   + V    + +  V E  +  ++L  NK D+ N
Sbjct: 73  RIRPLWKHYFQNTQGLIFVVDSNDRERIQEVADELQKMLLVDELRDAVLLLFANKQDLPN 132

>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 53/129 (41%), Gaps = 19/129 (14%)
Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            +   K++IVG    GKTT + +    E      PTIG  V  +         RF  WD 
Sbjct: 19  SHQEHKVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDI 73
Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFD--------VTARLTYKNVPTWHRDLCRVCENIPIV 121
            GQE      + YY + +  I++ D        VT    YK +   H DL +      ++
Sbjct: 74  GGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLA--HEDLRKA----GLL 127
Query: 122 LCGNKVDVK 130
           +  NK DVK
Sbjct: 128 IFANKQDVK 136

>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5) (Casp Target) Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE 
Sbjct: 23  KVIIVGLDNAGKTTILYQFSMNEVVHT-SPTIGSNVEEIVI----NNTRFLMWDIGGQES 77
Query: 75  FGGLRDGYYIHGQCAIIMFDVTAR 98
                + YY + +  I++ D T R
Sbjct: 78  LRSSWNTYYTNTEFVIVVVDSTDR 101

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/161 (22%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++V++GD G GKT+       G+ E+     +G +V+      +         DT   E
Sbjct: 5   YRVVLLGDPGVGKTSLASL-FAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAE 63
Query: 74  KF--GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           K      ++     G   +I++ +  R ++++       L R    +++PI+L GNK D+
Sbjct: 64  KLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 130 -KNRQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 164
            + R+V     +A  V F    + ++ E SA   +N  + F
Sbjct: 124 ARCREVSVEEGRACAVVF----DCKFIETSATLQHNVAELF 160

>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco) Length = 535

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 11/128 (8%)
Query: 9   VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--------HPLDFFTNCG 60
           V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V          L+      
Sbjct: 37  VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELK 96
Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
           +  F+ WD  GQE        +       +++ D     T  N   W R + +     P+
Sbjct: 97  ECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYGGKSPV 153
Query: 121 VLCGNKVD 128
           ++  NK+D
Sbjct: 154 IVVMNKID 161

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 1  MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 55
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 56 RIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With Brefeldin A Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 1   MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 55
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 56  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 112
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 113 LPN-AMNAAEITDKLGLHSLRHRNWY 137

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +      I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVETVQY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba Histolytica Hm- 1:imss Bound To Mg-Gdp Length = 178

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG    GKT+ + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          K   L   YY + Q  I + D   R
Sbjct: 73 KIRPLWRHYYQNTQAIIFVVDSNDR 97

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  ++F      I F  WD  GQ+K
Sbjct: 19  RILMVGLDAAGKTTILYKVKLGEVVTTI-PTIGFNVETVEF----RNISFTVWDVGGQDK 73
Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDV 129
              L   YY +    I + D   R   + +     +L R+      ++  I++  NK D+
Sbjct: 74  IRPLWRHYYSNTDGLIFVVDSNDR---ERIDDAREELHRMINEEELKDAIILVFANKQDL 130
Query: 130 KNRQVKAKQVT 140
            N  + A +VT
Sbjct: 131 PN-AMSAAEVT 140

>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound Conformation Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++++VG  G GKTT + +   GE      PTIG  V  + +   C  I F  WD  GQ+
Sbjct: 18 MRILMVGLDGAGKTTVLYKLKLGEVITTI-PTIGFNVECVQY---C-NISFTVWDVGGQD 72
Query: 74 KFGGLRDGYYIHGQCAIIMFDVTAR 98
          +   L   YY + +  I + D   R
Sbjct: 73 RIRSLWRHYYCNTEGVIFVVDSNDR 97

>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed With Gdp, Dimeric Crystal Form Length = 181

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 18/146 (12%)
Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 18  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQD 72
Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D
Sbjct: 73  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQD 129
Query: 129 VKNRQVKAKQVT----FHRKKNLQYY 150
           + N  + A ++T     H  ++  +Y
Sbjct: 130 LPN-AMNAAEITDKLGLHSLRHRNWY 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-130
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-112
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-47
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-45
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	3e-45
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-44
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	2e-44
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	4e-44
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	4e-44
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-44
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-43
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-43
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-43
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	3e-43
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-43
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	6e-43
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	9e-43
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	9e-43
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	9e-43
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	1e-42
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-42
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	1e-42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-42
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-42
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-42
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	3e-42
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	3e-42
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-42
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	4e-42
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	4e-42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	5e-42
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	7e-42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-42
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	9e-42
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	2e-41
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-41
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	3e-41
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-41
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	3e-41
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-41
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	4e-41
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	5e-41
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	9e-41
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-40
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-40
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-40
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-40
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	3e-40
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	3e-40
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	3e-40
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	6e-40
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	8e-40
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	9e-40
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-39
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	4e-39
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	6e-39
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-39
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	1e-38
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	5e-38
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	1e-37
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-37
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	3e-37
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	7e-37
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	7e-36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-35
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	1e-33
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	1e-33
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	3e-33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	5e-32
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	4e-31
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	2e-30
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	3e-30
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	8e-30
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	9e-30
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-29
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	5e-29
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	1e-28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	4e-28
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-26
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	1e-21
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	6e-19
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	9e-18
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	1e-13
3llu_A	196	RAS-related GTP-binding protein C; structural geno	8e-12
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	1e-11
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	1e-10
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-10
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	3e-10
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	3e-10
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	3e-10
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	1e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-09
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	2e-09
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	5e-09
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	6e-09
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-07
2fh5_B	214	SR-beta, signal recognition particle receptor beta	2e-06
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	8e-06
2ged_A	193	SR-beta, signal recognition particle receptor beta	3e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	7e-05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	2e-04
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-04

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  364 bits (937), Expect = e-130
 Identities = 164/218 (75%), Positives = 179/218 (82%), Gaps = 1/218 (0%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
           MA   Q       FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G
Sbjct: 4   MASAAQGEPQV-QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRG 62

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI 120
            I+F  WDTAGQEKFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPI
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI 122

Query: 121 VLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VLCGNKVD+K+R+VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 123 VLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 182

Query: 181 ESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD 218
             PALAPPEV +D A   Q+E +L  A +  LPDEDDD
Sbjct: 183 AMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD 220

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  320 bits (822), Expect = e-112
 Identities = 90/215 (41%), Positives = 132/215 (61%), Gaps = 6/215 (2%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-IRF 64
            +  +  ++K+ ++GDGG GKTT++ R L G FEK Y  T+G   HP+ F  + G  I+F
Sbjct: 5   MERREL-TYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKF 63

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQEK   L+D YYI    AI+ FDVT+R+T +N+  W ++   V     PIV+C
Sbjct: 64  NVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVC 123

Query: 124 GNKVDVKNRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE 181
            NK+D+KNRQ  +K++     + KN +Y+EISAK+ +NF  PFL+LAR   G P+L FV 
Sbjct: 124 ANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRPDLIFVS 183

Query: 182 SPALAPPEVQIDLAAQQQHEA-ELAAAASQPLPDE 215
           +  L P EV  D  + ++ +  +    AS+  P+E
Sbjct: 184 NVNLEPTEVNYDYHSPEESKYIDYMEQASKMAPEE 218

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  152 bits (387), Expect = 7e-47
 Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K++I+GD G GKT+ + +++  +F  +Y+ TIG      DF T     +   +    WD
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA-----DFLTKEVMVDDRLVTMQIWD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  L   +Y    C +++FDVTA  T+K + +W  +       R  EN P V+ 
Sbjct: 64  TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 124 GNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  148 bits (376), Expect = 1e-45
 Identities = 52/169 (30%), Positives = 88/169 (52%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           +  + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV     DF       N   +R 
Sbjct: 3   EV-AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGV-----DFLERQIQVNDEDVRL 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  
Sbjct: 57  MLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQ 116

Query: 125 NKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK+D+ +   +K ++     ++  L++Y  S K + N  + F YLA K 
Sbjct: 117 NKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  147 bits (374), Expect = 3e-45
 Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 17/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK++++GDGG GK++ + R++T +F+ +   TIGV     +F       +   +    WD
Sbjct: 8   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGV-----EFLNKDLEVDGHFVTMQIWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVLC 123
           TAGQE+F  LR  +Y    C ++ F V    +++N+  W ++       +  E+ P V+ 
Sbjct: 63  TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVIL 122

Query: 124 GNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 123 GNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  145 bits (368), Expect = 2e-44
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  + +PTI       D +      +        
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE------DSYRKQVVIDGETCLLDI 55

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL G
Sbjct: 56  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 125 NKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V+++Q     R   + Y E SAK+    E  F  L R+
Sbjct: 116 NKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  145 bits (368), Expect = 2e-44
 Identities = 49/173 (28%), Positives = 85/173 (49%), Gaps = 20/173 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK-IRFYCW 67
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG      DF T     +  K      W
Sbjct: 9   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA-----DFLTKEVTVDGDKVATMQVW 63

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-----CRVCENIPIVL 122
           DTAGQE+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+
Sbjct: 64  DTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVI 123

Query: 123 CGNKVDVK--NRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            GNK+D +   + V  K      +   ++  +  SAK+  N +  F  +AR  
Sbjct: 124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  145 bits (368), Expect = 4e-44
 Identities = 47/167 (28%), Positives = 79/167 (47%), Gaps = 14/167 (8%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
             +KLV+VG GG GK+    + +   F  +Y+PTI       D +      +        
Sbjct: 20  TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDI 73

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE++  +RD Y   G+  + +F +    ++ ++  +   + RV   +++P+VL G
Sbjct: 74  LDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVG 133

Query: 125 NKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           NK D+  R V  KQ     +   + + E SAK+    E  F  L R+
Sbjct: 134 NKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVRE 180

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  144 bits (366), Expect = 4e-44
 Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 21/172 (12%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT------NCGKIRFYCW 67
            K+V++GDG +GKT+         F K+Y+ TIG+     DFF           +    W
Sbjct: 7   LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL-----DFFLRRITLPGNLNVTLQIW 61

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLC 123
           D  GQ   G + D Y    Q  ++++D+T   +++N+  W+  + +V E       + L 
Sbjct: 62  DIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALV 121

Query: 124 GNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D+++ R +   K  +  F ++     + +SAK+  +    F  +A ++
Sbjct: 122 GNKIDLEHMRTIKPEKHLR--FCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  144 bits (366), Expect = 7e-44
 Identities = 47/166 (28%), Positives = 81/166 (48%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV+VG  G GK+    + +   F  +Y+PTI       D +      +         D
Sbjct: 5   YKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE------DSYRKQVVIDGETCLLDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK
Sbjct: 59  TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNK 118

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ +R V  KQ     R   + + E SAK+    +  F  L R++
Sbjct: 119 CDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREI 164

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  143 bits (363), Expect = 2e-43
 Identities = 53/167 (31%), Positives = 83/167 (49%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            KLV+VG GG GK+    + +   F   Y+PTI       D +T     +    R    D
Sbjct: 10  HKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILD 63

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK
Sbjct: 64  TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNK 123

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+++ RQV   +   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 124 ADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 170

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  143 bits (362), Expect = 2e-43
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 14/181 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           M+  +        FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +   
Sbjct: 3   MSSGDFGNPLR-KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTM 56

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 +R   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+    
Sbjct: 57  YLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER 116

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
             ++ I+L GNK D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L 
Sbjct: 117 GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

Query: 173 G 173
           G
Sbjct: 177 G 177

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  143 bits (363), Expect = 3e-43
 Identities = 52/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 1   MALPNQQTVDY-PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           MA    +  +     K+++VG GG GK+    + +  EF + YEPT        D +   
Sbjct: 1   MAANKPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKK 54

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV 114
              +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV
Sbjct: 55  VVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRV 114

Query: 115 --CENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
              EN+P +L GNK D    RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 115 KEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 173

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  142 bits (360), Expect = 3e-43
 Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K+V++G GG GK+    + +TG F +KY+PTI       DF+      +         D
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE------DFYRKEIEVDSSPSVLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNK
Sbjct: 58  TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNK 117

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           VD+++ R+V + +      +    + E SAKS    ++ F  + R
Sbjct: 118 VDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVR 162

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  142 bits (360), Expect = 4e-43
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+++VG GG GK+    + +  EF + YEPT        D +      +  +++    D
Sbjct: 19  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 72

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK
Sbjct: 73  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 132

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 133 SDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMR 177

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  141 bits (359), Expect = 5e-43
 Identities = 50/165 (30%), Positives = 84/165 (50%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+++VG GG GK+    + +  EF + YEPT        D +      +  +++    D
Sbjct: 5   HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA------DSYRKKVVLDGEEVQIDILD 58

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK
Sbjct: 59  TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNK 118

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D+++ RQV  ++      + N+ Y E SAK+  N +K F  L R
Sbjct: 119 SDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  142 bits (361), Expect = 6e-43
 Identities = 43/165 (26%), Positives = 78/165 (47%), Gaps = 15/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V+ G GG GK++ V R + G F   Y PTI       D +      +         D
Sbjct: 9   YRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE------DTYRQVISCDKSVCTLQITD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I++F VT++ + + +   ++ + ++    E+IP++L GN
Sbjct: 63  TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGN 122

Query: 126 KVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   R+V  ++     ++    + E SAK NYN ++ F  L  
Sbjct: 123 KCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLT 167

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  141 bits (358), Expect = 9e-43
 Identities = 43/168 (25%), Positives = 72/168 (42%), Gaps = 15/168 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S K+ I+G    GK++   + + G+F   Y+PTI       + FT     N  +      
Sbjct: 6   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE------NTFTKLITVNGQEYHLQLV 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
           DTAGQ+++      Y I     I+++ VT+  +++ +   H  L  +     IPI+L GN
Sbjct: 60  DTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGN 119

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D    R +  ++        N  + E SAK N      F  +  + 
Sbjct: 120 KKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 167

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  142 bits (360), Expect = 9e-43
 Identities = 38/167 (22%), Positives = 80/167 (47%), Gaps = 15/167 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
            K+VI+G    GKT+   + + GEF + Y+PT+       + ++        +   +  D
Sbjct: 25  RKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVE------NTYSKIVTLGKDEFHLHLVD 78

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAGQ+++  L   + I     ++++ VT+  +++ + + ++ L        +P+VL GNK
Sbjct: 79  TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNK 138

Query: 127 VDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+   R+V+A +           + E SA+ N   +  F  + +++
Sbjct: 139 ADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEI 185

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  142 bits (360), Expect = 9e-43
 Identities = 54/197 (27%), Positives = 92/197 (46%), Gaps = 17/197 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FKLV +G+   GKT+ + R +   F+  Y+ TIG+     DF +         +R   WD
Sbjct: 17  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI-----DFLSKTMYLEDRTVRLQLWD 71

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKV 127
           TAG E+F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK 
Sbjct: 72  TAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKT 131

Query: 128 DVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           D+ + RQV  ++     ++ N+ + E SAK+ YN ++ F  +A  L G  +         
Sbjct: 132 DLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGMES----TQDRS 187

Query: 186 APPEVQIDLAAQQQHEA 202
               + I L   Q+   
Sbjct: 188 REDMIDIKLEKPQEQPV 204

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  141 bits (357), Expect = 1e-42
 Identities = 52/170 (30%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
            Y SFK+V++G+G  GKT+ V R+   +F  K+  T+G       F T        ++  
Sbjct: 4   AY-SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA-----SFLTKKLNIGGKRVNL 57

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  L   YY     AI+++D+T   +++ V  W ++L ++    I + + 
Sbjct: 58  AIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIV 117

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK+D++  R V  ++  ++      ++Y  SAK N   E+ FL L +++
Sbjct: 118 GNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  141 bits (358), Expect = 1e-42
 Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 15/181 (8%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE---------VHPLDF 55
           +    DY   K + +GD G GKT+ + ++  G+F  K+  T+G++          +  D 
Sbjct: 4   SDGDYDY-LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDG 62

Query: 56  FTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
               G+ I    WDTAG E+F  L   ++      +++FD+T   ++ NV  W   L   
Sbjct: 63  AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMH 122

Query: 114 -VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
              EN  IVLCGNK D+++ R VK ++      K  + Y+E SA +  N       L   
Sbjct: 123 AYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDL 182

Query: 171 L 171
           +
Sbjct: 183 I 183

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  140 bits (355), Expect = 1e-42
 Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 15/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK+++VG+ G GK+T        + +  +E          D +      +  ++    +D
Sbjct: 3   FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE-----DTYERRIMVDKEEVTLIVYD 57

Query: 69  TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
              Q   GG L+D     G   +I+F VT R ++  VP     L       ++P++L GN
Sbjct: 58  IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 117

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 118 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 163

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  140 bits (355), Expect = 2e-42
 Identities = 42/166 (25%), Positives = 78/166 (46%), Gaps = 16/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++ + G GG GK++ V R + G F + Y PT+       D +      +         D
Sbjct: 4   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE------DTYRQVISCDKSICTLQITD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGN 125
           T G  +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GN
Sbjct: 58  TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGN 117

Query: 126 KVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D   +R+V++ +     R     + E SAK N+N ++ F  L  
Sbjct: 118 KCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 163

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  141 bits (357), Expect = 2e-42
 Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 15/166 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           FK+++VG+ G GK+T        + +  +EP         D +      +  ++    +D
Sbjct: 24  FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPE-----DTYERRIMVDKEEVTLVVYD 78

Query: 69  TAGQEKFGG-LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGN 125
              Q   GG LRD     G   +I+F VT R ++  VP     L       ++P++L GN
Sbjct: 79  IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGN 138

Query: 126 KVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           K D  ++R+V  ++        + ++ E SA  ++N  + F    R
Sbjct: 139 KSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVR 184

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  140 bits (355), Expect = 2e-42
 Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FKL+I+GD G GK++ + R     F   Y  TIGV     DF       N  K++ 
Sbjct: 7   DH-LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGV-----DFKIRTVEINGEKVKL 60

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
             WDTAGQE+F  +   YY      I+++DVT+  ++ NV  W  ++ + C+++  +L G
Sbjct: 61  QIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVG 120

Query: 125 NKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           NK D    + V+ +    F  +  +Q +E SAK N N E+ F  +   +
Sbjct: 121 NKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  139 bits (353), Expect = 3e-42
 Identities = 49/169 (28%), Positives = 85/169 (50%), Gaps = 13/169 (7%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D    K++++GD G GK+  + R +  +F   +  TIG+     DF       N  K++ 
Sbjct: 1   DS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTVDINGKKVKL 54

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE+F  +   YY      I+++D+T   T+ N+  W + +     +   ++L 
Sbjct: 55  QIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 114

Query: 124 GNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 115 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  141 bits (357), Expect = 3e-42
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 15/185 (8%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE----------V 50
           +        DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++           
Sbjct: 14  LVPRGSGDYDY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQ 72

Query: 51  HPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD 110
            P        K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   
Sbjct: 73  GPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQ 132

Query: 111 LCR--VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166
           L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK    
Sbjct: 133 LQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVET 192

Query: 167 LARKL 171
           L   +
Sbjct: 193 LLDLI 197

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  139 bits (354), Expect = 4e-42
 Identities = 58/178 (32%), Positives = 95/178 (53%), Gaps = 14/178 (7%)

Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           ++         + KLV++GD G GK++ V R +  +F +  E TIG       FF+    
Sbjct: 2   SMAAAGNKSI-NAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA-----AFFSQTLA 55

Query: 58  -NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC- 115
            N   ++F  WDTAGQE++  L   YY     AII+FDVT + +++    W ++L     
Sbjct: 56  VNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGN 115

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            N+ + L GNK D+ + R+V A+   T+ ++  L + E SAK+  N ++ F  +AR+L
Sbjct: 116 PNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRL 173

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  139 bits (352), Expect = 4e-42
 Identities = 57/167 (34%), Positives = 91/167 (54%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
            FKLV++G+   GK++ V R + G+F +  E TIG       F T     +   ++F  W
Sbjct: 6   QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA-----AFLTQTVCLDDTTVKFEIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNK 126
           DTAGQE++  L   YY   Q AI+++D+T   ++     W ++L R    NI I L GNK
Sbjct: 61  DTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ N R V  ++  ++    +L + E SAK++ N  + F+ +A+KL
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  140 bits (356), Expect = 4e-42
 Identities = 51/178 (28%), Positives = 89/178 (50%), Gaps = 13/178 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
            +  N ++ D    K++++GD G GK+  + R +  +F   +  TIG+     DF     
Sbjct: 9   ASSGNGKSYDS-IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGI-----DFKIKTV 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+++DVT   T+ N+  W + +    
Sbjct: 63  DINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA 122

Query: 115 CENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   ++L GNK D++ R V A Q     ++  + + E SAK++ N  + F  LA+ +
Sbjct: 123 NDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 180

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  139 bits (353), Expect = 5e-42
 Identities = 58/179 (32%), Positives = 90/179 (50%), Gaps = 16/179 (8%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           MA     + + P++KLV+VGDGG GK+    +     F   Y+PTI       D +    
Sbjct: 6   MATSAVPSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE------DSYLKHT 59

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV- 114
             +         DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV 
Sbjct: 60  EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVK 119

Query: 115 -CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSN-YNFEKPFLYLAR 169
             E+ P++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct: 120 DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  138 bits (351), Expect = 7e-42
 Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 17/169 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ + R +   F+    PTIG       F T          +F  W
Sbjct: 6   ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGA-----SFMTKTVQYQNELHKFLIW 60

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAG E+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK
Sbjct: 61  DTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNK 120

Query: 127 VDVKN-RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V    AK   +    +  + E SAK+  N  + F+ ++R++
Sbjct: 121 CDLTDVREVMERDAKD--YADSIHAIFVETSAKNAININELFIEISRRI 167

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  139 bits (353), Expect = 7e-42
 Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 13/167 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
             K+ ++GD G GK++ V R +   F+    PTIG       F T          +F  W
Sbjct: 23  ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGA-----SFMTKTVPCGNELHKFLIW 77

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK
Sbjct: 78  DTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNK 137

Query: 127 VDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            D+ + R+V  K    +         E SAK+  N E+ F  ++R++
Sbjct: 138 CDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 184

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  139 bits (352), Expect = 9e-42
 Identities = 56/176 (31%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                 DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +
Sbjct: 21  TRDDEYDY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVD 74

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
              I+   WDTAG E++  +   YY     A++++D+   LTY+NV  W ++L      N
Sbjct: 75  GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN 134

Query: 118 IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           I I+L GNK D+++ R V   +   F  K  L + E SA  + N E  F  +  ++
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  138 bits (350), Expect = 2e-41
 Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 14/192 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
              + V   + K++I+G+ G GK++ + R     F+ +   TIGV     DF       +
Sbjct: 7   GMDEDVLT-TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGV-----DFKVKTISVD 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--E 116
             K +   WDTAGQE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   
Sbjct: 61  GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN 120

Query: 117 NIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           +I  +L GNK+D +NR+V   + + F RK ++ + E SAK+    +  F  L  K+   P
Sbjct: 121 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 176 NLHFVESPALAP 187
            L   E+    P
Sbjct: 181 GLWESENQNSGP 192

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  138 bits (350), Expect = 2e-41
 Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +     +  ++  FK+V++G+ G GKT  + R    EF      TIGV     +F T   
Sbjct: 14  LVPRGSEDYNF-VFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGV-----EFSTRTV 67

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
                 ++   WDTAG E++  +   YY     A+++FD+T   TY  V  W ++L    
Sbjct: 68  MLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA 127

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              I ++L GNK D+   R+V  ++   F     L + E SA  + N E  F  + +++
Sbjct: 128 EATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  138 bits (349), Expect = 3e-41
 Identities = 56/175 (32%), Positives = 95/175 (54%), Gaps = 18/175 (10%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T D+  FK +++G+ GTGK+  + + +  +F+     TIGV     +F +         
Sbjct: 5   ETYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGV-----EFGSKIINVGGKY 58

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY     A++++D+T+R TY  +  W  D   +  +NI I
Sbjct: 59  VKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI 118

Query: 121 VLCGNKVDVK-NRQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +LCGNK D+  +R+V    A +  F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 119 ILCGNKKDLDADREVTFLEASR--FAQENELMFLETSALTGENVEEAFVQCARKI 171

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  138 bits (349), Expect = 3e-41
 Identities = 53/170 (31%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           D+  FK +++G  GTGK+  + + +  +F++    TIGV     +F +         ++ 
Sbjct: 23  DF-LFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV-----EFGSRVVNVGGKTVKL 76

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE+F  +   YY     A++++D+T+R TY ++  W  D   +   NI ++LC
Sbjct: 77  QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILC 136

Query: 124 GNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+   R+V   +   F ++  L + E SA +  N E+ FL  AR +
Sbjct: 137 GNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  137 bits (347), Expect = 3e-41
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 18/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +KLV++G GG GK+    + + G F +KY+PTI       D +      +C +      D
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE------DSYRKQVEVDCQQCMLEILD 57

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
           TAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK
Sbjct: 58  TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNK 117

Query: 127 VD-VKNRQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D    R V   + + +   +  N  + E SAKS  N  + F  L R
Sbjct: 118 CDLEDERVVGKEQGQNLA-RQWCNCAFLESSAKSKINVNEIFYDLVR 163

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  137 bits (347), Expect = 3e-41
 Identities = 57/176 (32%), Positives = 87/176 (49%), Gaps = 14/176 (7%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
                  Y  FK +I+GD G GK+  + +    +F      TIGV     +F T     +
Sbjct: 7   TAPYNYSY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGV-----EFGTRIIEVS 60

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-EN 117
             KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N
Sbjct: 61  GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 120

Query: 118 IPIVLCGNKVDVK-NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             I+L GNK D++  R V  ++   F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  137 bits (348), Expect = 4e-41
 Identities = 59/179 (32%), Positives = 93/179 (51%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
           +   + +  D+  FK+V++G+ G GKT  V+R   G F      TIGV     DF     
Sbjct: 15  VPRGSMEDYDF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGV-----DFMIKTV 68

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             N  K++   WDTAGQE+F  +   YY      I+ +D+T   +++ +P W R++ +  
Sbjct: 69  EINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA 128

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +  VL GNK+D+   R+V  ++   F   +++ Y E SAK + N EK FL LA +L
Sbjct: 129 SNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  137 bits (348), Expect = 4e-41
 Identities = 58/170 (34%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK+V++GD G GK+  + R    EF  + + TIGV     +F T     +   I+ 
Sbjct: 3   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV-----EFATRSIQVDGKTIKA 56

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L 
Sbjct: 57  QIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLV 116

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V   +   F  K NL + E SA  + N E+ F  +  ++
Sbjct: 117 GNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  137 bits (347), Expect = 5e-41
 Identities = 53/172 (30%), Positives = 91/172 (52%), Gaps = 18/172 (10%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
            Y  FK +I+GD G GK+  + +     F+  ++ TIGV     +F       +  +I+ 
Sbjct: 19  SY-LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV-----EFGARMVNIDGKQIKL 72

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLC 123
             WDTAGQE F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L 
Sbjct: 73  QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLI 132

Query: 124 GNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V   + +   F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 133 GNKSDLESRRDVKREEGEA--FAREHGLIFMETSAKTACNVEEAFINTAKEI 182

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  136 bits (345), Expect = 9e-41
 Identities = 47/173 (27%), Positives = 85/173 (49%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +  DY  FKL+++G+   GKT+F+ R+    F   +  T+G+     DF       +  +
Sbjct: 17  RGSDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTVYRHDKR 70

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  +
Sbjct: 71  IKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV 130

Query: 121 VLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+++ R V A+           +++E SAK N N ++ F  L   +
Sbjct: 131 ILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  136 bits (345), Expect = 1e-40
 Identities = 49/179 (27%), Positives = 84/179 (46%), Gaps = 14/179 (7%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q   DY  FKL+I+G+   GKT+F+ R+    F   +  T+G+     DF     
Sbjct: 12  ENLYFQGNFDY-MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI-----DFKVKTV 65

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-V 114
             +  +++   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +    
Sbjct: 66  YRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS 125

Query: 115 CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +N  ++L GNK D++  R V  ++      +    ++E SAK N +  + F  L   +
Sbjct: 126 WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  136 bits (345), Expect = 1e-40
 Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 39/196 (19%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE------------------------ 49
           +K V++G+   GK++ V R     F +    TIG                          
Sbjct: 8   YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNN 67

Query: 50  -------------VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT 96
                            ++  N   I+F  WDTAGQE++  +   YY    CAI++FD++
Sbjct: 68  INSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDIS 127

Query: 97  ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAK 155
              T     TW   L ++  N  I+L  NK+D    QV   +V  + +  NL + + SAK
Sbjct: 128 NSNTLDRAKTWVNQL-KISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAK 186

Query: 156 SNYNFEKPFLYLARKL 171
           +  N +  F  LA ++
Sbjct: 187 TGTNIKNIFYMLAEEI 202

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  135 bits (342), Expect = 2e-40
 Identities = 32/165 (19%), Positives = 67/165 (40%), Gaps = 16/165 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +K++++G  G GK+   +    G  +       G        +      +  +     +D
Sbjct: 3   YKVLLLGAPGVGKSALARI-FGGVEDGPEAEAAG------HTYDRSIVVDGEEASLMVYD 55

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNK 126
              Q+    L       G   +I++ VT + +++        L R    +++PI+L GNK
Sbjct: 56  IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115

Query: 127 VD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
            D V++R+V   +        + ++ E SA  ++N +  F  + R
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR 160

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  135 bits (343), Expect = 3e-40
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCG 60
               DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       +  
Sbjct: 27  NPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDGK 80

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIP 119
            I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+ 
Sbjct: 81  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 140

Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 141 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 194

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  135 bits (342), Expect = 3e-40
 Identities = 47/184 (25%), Positives = 83/184 (45%), Gaps = 24/184 (13%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----N 58
               +    ++K+V+ GD   GK++F+ R    EF +    T+GV     DF       +
Sbjct: 20  AKSFSSQK-AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV-----DFQMKTLIVD 73

Query: 59  CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCEN 117
             +     WDTAGQE+F  +   Y+      ++++DVT   ++ N+  W   +     E 
Sbjct: 74  GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET 133

Query: 118 IPIVLCGNKVDVKN-------RQVK---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL 167
           +PI+L GNK D+++       + V     ++          + E SAK   N  +  L+L
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEK--LAMTYGALFCETSAKDGSNIVEAVLHL 191

Query: 168 ARKL 171
           AR++
Sbjct: 192 AREV 195

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  135 bits (343), Expect = 3e-40
 Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT---- 57
           P   T      K+ +VG+   GK+  +        +F K Y  T GV     +       
Sbjct: 12  PIDITATL-RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGV-----EVVVAPVT 65

Query: 58  -NCGKIRF--YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--- 111
                +    +  DTAG + +      Y+     AI++FDV++  ++++   W   L   
Sbjct: 66  IPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSA 125

Query: 112 -CRVCENIPIVLCGNKVDVKN--RQVKAKQV-TFHRKKNLQYYEISAK-SNYNFEKPFLY 166
                  +  VL  NK D+     QV+      +     L ++++SA     + + PFL 
Sbjct: 126 RPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLS 185

Query: 167 LARKL 171
           +A   
Sbjct: 186 IATTF 190

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  135 bits (341), Expect = 3e-40
 Identities = 54/173 (31%), Positives = 88/173 (50%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +T DY  FKL+++GD G GKT  + R     F   +  TIG+     DF       +  +
Sbjct: 3   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGI-----DFKIRTIELDGKR 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           I+   WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  
Sbjct: 57  IKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ GNK DV + RQV  ++         +++ E SAK+N N E  F  LAR +
Sbjct: 117 MILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  135 bits (341), Expect = 6e-40
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 14/170 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRF 64
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G+     DF       N  +I+ 
Sbjct: 6   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGI-----DFKVKTIYRNDKRIKL 59

Query: 65  YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLC 123
             WDTAG E++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L 
Sbjct: 60  QIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLV 119

Query: 124 GNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D+++ R V +++          +++E SAK N N ++ F  L   +
Sbjct: 120 GNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  135 bits (341), Expect = 8e-40
 Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 15/180 (8%)

Query: 1   MALPNQ-QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-- 57
           M+  +     D   FK+V++GD G GK+  + R    EF    + TIGV     +F T  
Sbjct: 1   MSSEDYGYDYDL-LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV-----EFATRT 54

Query: 58  ---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR- 113
                 +I+   WDTAGQE++  +   YY     A+I++D++   +Y+N   W  +L   
Sbjct: 55  LEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELREN 114

Query: 114 VCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +N+ + L GNK D+ + R V  ++  TF ++  L + E SA ++ N +K F  L   +
Sbjct: 115 ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTI 174

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  134 bits (339), Expect = 9e-40
 Identities = 54/174 (31%), Positives = 86/174 (49%), Gaps = 14/174 (8%)

Query: 6   QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCG 60
               DY  FKL+++GD G GK+  + R     + + Y  TIGV     DF       +  
Sbjct: 10  NPEYDY-LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV-----DFKIRTIELDGK 63

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIP 119
            I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W +++ R   EN+ 
Sbjct: 64  TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN 123

Query: 120 IVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +L GNK D+   + V       F     + + E SAK+  N E+ F+ +A ++
Sbjct: 124 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI 177

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  132 bits (335), Expect = 2e-39
 Identities = 33/167 (19%), Positives = 67/167 (40%), Gaps = 17/167 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCWD 68
           +++V++GD G GKT+        +    +E          D +      +         D
Sbjct: 5   YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGE------DVYERTLTVDGEDTTLVVVD 58

Query: 69  TAGQEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
           T   EK      ++     G   +I++ +  R ++++       L R    +++PI+L G
Sbjct: 59  TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVG 118

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           NK D  + R+V  ++        + ++ E SA   +N  + F  + R
Sbjct: 119 NKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVR 165

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  133 bits (336), Expect = 4e-39
 Identities = 53/173 (30%), Positives = 84/173 (48%), Gaps = 14/173 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
              DY  FKL+++G+ G GK+  + R     +   Y  TIGV     DF       +   
Sbjct: 3   SEYDY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGV-----DFKIKTVELDGKT 56

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120
           ++   WDTAGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  
Sbjct: 57  VKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK 116

Query: 121 VLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+K+ R V+      F     + + E SA  + N E  FL +AR++
Sbjct: 117 LLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  131 bits (332), Expect = 6e-39
 Identities = 51/171 (29%), Positives = 88/171 (51%), Gaps = 15/171 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFT-----NCGKIR 63
           D  +FK+++VGD G GKT  + R   G F    +  T+G+     DF       +  K++
Sbjct: 8   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI-----DFRNKVLDVDGVKVK 61

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVL 122
              WDTAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L
Sbjct: 62  LQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALML 121

Query: 123 CGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            GNKVD  + R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 172

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  131 bits (333), Expect = 7e-39
 Identities = 61/174 (35%), Positives = 90/174 (51%), Gaps = 15/174 (8%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGK 61
           +  D+  FKLV+VGD   GKT  V+R  TG F ++   TIGV     DF          +
Sbjct: 24  EQYDF-LFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV-----DFTMKTLEIQGKR 77

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPI 120
           ++   WDTAGQE+F  +   YY     AI+ +D+T R ++ +VP W  D+ +    NI  
Sbjct: 78  VKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ 137

Query: 121 VLCGNKVDVKN-RQVKAKQV-TFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
           +L GNK D+   R+V   +  +     + L   E SAK + N E+ FL +A +L
Sbjct: 138 LLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  131 bits (332), Expect = 1e-38
 Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 22/170 (12%)

Query: 14  FKLVIVGDGGTGKTTFVKR--HLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIR 63
           +++V++G+ G GK+T       +    +   E          D +         +   I 
Sbjct: 38  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE------DTYERTLMVDGESATIIL 91

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIV 121
              W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+
Sbjct: 92  LDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII 149

Query: 122 LCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           L GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R
Sbjct: 150 LVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVR 199

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  130 bits (329), Expect = 2e-38
 Identities = 51/176 (28%), Positives = 96/176 (54%), Gaps = 15/176 (8%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NC 59
           + +  D+   +++I+G  G GKT+ ++R     F +  + T+GV     DF         
Sbjct: 19  SPRPADF-KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV-----DFKIKTVELRG 72

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENI 118
            KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+ 
Sbjct: 73  KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA 132

Query: 119 PIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 171
            ++L GNK+D + +R++  +Q   F ++   +++ E SAK N+N ++ FL L   +
Sbjct: 133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  129 bits (327), Expect = 5e-38
 Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 17/170 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
              KL I G  G GK+  V R LT  F  +Y+PT+         +      +   +    
Sbjct: 27  AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE------STYRHQATIDDEVVSMEI 80

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCG 124
            DTAGQE     R+G+   G+  ++++D+T R +++ V      L  +   +N+ ++L G
Sbjct: 81  LDTAGQEDT-IQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVG 139

Query: 125 NKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
           NK D   +RQV  ++      +    +YE SA +   N  + F  L R++
Sbjct: 140 NKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  128 bits (325), Expect = 1e-37
 Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 18/170 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--------NCGKIRFY 65
           +++V++G+ G GK+T              +  +  E    D +         +   I   
Sbjct: 7   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGE----DTYERTLMVDGESATIILLD 62

Query: 66  CWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLC 123
            W+  G+ ++  L D     G   +I++ +T R +++        L R    E+IPI+L 
Sbjct: 63  MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120

Query: 124 GNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           GNK D V+ R+V   +        + ++ E SA   +N ++ F  + R++
Sbjct: 121 GNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  128 bits (323), Expect = 2e-37
 Identities = 56/185 (30%), Positives = 93/185 (50%), Gaps = 23/185 (12%)

Query: 2   ALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-- 59
           +L  + +     FK++++GD   GKT    R   G F  + E TIGV     DF      
Sbjct: 10  SLVPRGSRSR-IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV-----DFRERAVD 63

Query: 60  --GK-IRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-- 113
             G+ I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P W  +  +  
Sbjct: 64  IDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHL 123

Query: 114 VCENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKS---NYNFEKPFLY 166
           +  +IP +L GNK D+++  QV    A++  F    ++  +E SAK+   N + E  F+ 
Sbjct: 124 LANDIPRILVGNKCDLRSAIQVPTDLAQK--FADTHSMPLFETSAKNPNDNDHVEAIFMT 181

Query: 167 LARKL 171
           LA KL
Sbjct: 182 LAHKL 186

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  127 bits (321), Expect = 3e-37
 Identities = 37/176 (21%), Positives = 70/176 (39%), Gaps = 34/176 (19%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGV---------EVHPLDFFTNCGKI 62
           P  K+ IVG+  +GK+  V R+LTG + ++  P  G          + + L         
Sbjct: 19  PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLI------- 71

Query: 63  RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPI 120
                D  G  +       +       + +F +   ++++ V  +   LC       +P+
Sbjct: 72  ----RDEGGPPEL-----QFAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM 122

Query: 121 VLCGNKVDVKN---RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           VL G +  +     R +   +A++++    K   YYE  A    N E+ F  +A+K
Sbjct: 123 VLVGTQDAISAANPRVIDDSRARKLS-TDLKRCTYYETCATYGLNVERVFQDVAQK 177

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  126 bits (317), Expect = 7e-37
 Identities = 56/170 (32%), Positives = 89/170 (52%), Gaps = 16/170 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYCW 67
           S KLV++G+   GK++ V R ++ +F +  EPTIG       F T     N   ++F  W
Sbjct: 3   SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGA-----AFLTQRVTINEHTVKFEIW 57

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNK 126
           DTAGQE+F  L   YY + Q A++++DVT   ++     W ++L     ++I I L GNK
Sbjct: 58  DTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNK 117

Query: 127 VDVK----NRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +D       R+V  ++      +K L ++E SAK+  N    FL +  K+
Sbjct: 118 IDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  123 bits (312), Expect = 7e-36
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 26/174 (14%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT-----NCGKIRFYC 66
           P  +L ++GD  +GK++ + R LTG ++   E T        + +      +        
Sbjct: 6   PELRLGVLGDARSGKSSLIHRFLTGSYQ-VLEKTES------EQYKKEMLVDGQTHLVLI 58

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV----CENIPIVL 122
            + AG          +       I +F +    +++ V   H  L  +       + + L
Sbjct: 59  REEAGAP-----DAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALAL 113

Query: 123 --CGNKVDVKN-RQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +++   + R V   +        K   YYE  A    N ++ F  +A+K+
Sbjct: 114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  122 bits (307), Expect = 4e-35
 Identities = 28/179 (15%), Positives = 67/179 (37%), Gaps = 26/179 (14%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFT--------NCGKIR 63
            KL+IVG+ G+GKTT +++ +  +         T+G+     D               + 
Sbjct: 3   MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGI-----DVKDWPIQIRDKRKRDLV 57

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVL 122
              WD AG+E+F      +       + ++D++        +  W  ++     + P++L
Sbjct: 58  LNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVIL 117

Query: 123 CGNKVDVKNRQVKAKQVT-----FHRKKNLQ-----YYEISAKSNYNFEKPFLYLARKL 171
            G  +DV + + +   ++        K+        ++  + + +    K    +  + 
Sbjct: 118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINES 176

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  118 bits (298), Expect = 1e-33
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 22/181 (12%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--- 57
             L  Q  ++     L I+G  G GK+    + LT  F  +Y+P +       D ++   
Sbjct: 12  ENLYFQGPLEV---NLAILGRRGAGKSALTVKFLTKRFISEYDPNLE------DTYSSEE 62

Query: 58  --NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC 115
             +   +     DTA  +      + Y       ++++ V +R ++ +  ++   L    
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121

Query: 116 ----ENIPIVLCGNKVD-VKNRQVKAKQ-VTFHRKKNLQYYEISAKSNY-NFEKPFLYLA 168
                +IP +L GNK+D  + RQV   + V    +    ++E+SA  ++ + +  F    
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181

Query: 169 R 169
           R
Sbjct: 182 R 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  118 bits (298), Expect = 1e-33
 Identities = 45/165 (27%), Positives = 69/165 (41%), Gaps = 11/165 (6%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VGDG  GKT  +     GE    Y PT+  E           +   + WDTAGQ
Sbjct: 23  ALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF-ENFSHVMKYKNEEFILHLWDTAGQ 81

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E++  LR   Y      ++ F V  R ++ N+ T W  ++    +    VL G KVD+  
Sbjct: 82  EEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDL-- 139

Query: 132 RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
           R+  +  VT     +L        Y E S+ +     + F     
Sbjct: 140 RKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVD 184

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  124 bits (312), Expect = 3e-33
 Identities = 36/194 (18%), Positives = 71/194 (36%), Gaps = 13/194 (6%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +  V     K+ ++GDG  GKT+ +K+ +   F+ K   T G+ V         G
Sbjct: 29  ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKG 88

Query: 61  --------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC 112
                   +  F+ WD  GQE        +       +++ D     T  N   W R + 
Sbjct: 89  LENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIE 145

Query: 113 RVCENIPIVLCGNKVD-VKNRQVKAKQVT-FHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           +     P+++  NK+D   +  ++ K++         +++ IS K+    E     L   
Sbjct: 146 KYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSA 205

Query: 171 LAGDPNLHFVESPA 184
           +    +++      
Sbjct: 206 VLHPDSIYGTPLAP 219

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  114 bits (288), Expect = 5e-32
 Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 13/169 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + + +F   Y PT+  +    +   +   +    WDTAGQ
Sbjct: 9   FIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV-FDNFSANVAVDGQIVNLGLWDTAGQ 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F + ++ +Y+NV   W  +L R   N+PIVL G K+D+++
Sbjct: 68  EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRD 127

Query: 132 ----RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPFLYLAR 169
                      +T         +     Y E S+K+  N +  F    +
Sbjct: 128 DKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIK 176

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  111 bits (280), Expect = 4e-31
 Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 15/171 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V VGDG  GKT  +  + +  F   Y PT+  +    +   N   +    WDTAGQ
Sbjct: 8   FIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF-DNFSANVVVNGATVNLGLWDTAGQ 66

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      I+ F + ++ +Y+NV   W  +L      +PIVL G K+D+++
Sbjct: 67  EDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRD 126

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                     A  +T  + + L        Y E S+KS  N +  F    R
Sbjct: 127 DKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIR 177

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  110 bits (276), Expect = 2e-30
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 17/169 (10%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAG
Sbjct: 29  QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAG 87

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVK 130
           QE +  LR   Y      +I F + +  +++NV   W+ ++   C N PI+L G K+D++
Sbjct: 88  QEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLR 147

Query: 131 N--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
           +        ++ K   +T+ +   +       +Y E SA +    +  F
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score =  109 bits (275), Expect = 3e-30
 Identities = 44/163 (26%), Positives = 69/163 (42%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT+ V  + T  +  +Y PT   +        +   +R    DTAGQ
Sbjct: 20  GVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA-FDNFSAVVSVDGRPVRLQLCDTAGQ 78

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           ++F  LR   Y +    ++ F V +  +++NV   W  ++   C   PI+L G + D++ 
Sbjct: 79  DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYN 159
                    + K K V            K   Y E SA +  N
Sbjct: 139 DVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKN 181

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score =  108 bits (272), Expect = 8e-30
 Identities = 42/168 (25%), Positives = 72/168 (42%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K V+VGDG  GKT  +  +    F ++Y PT+  + + +       +     +DTAGQ
Sbjct: 18  MLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQYLLGLYDTAGQ 76

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      +I F V    +++NV   W  +L     N+P +L G ++D+++
Sbjct: 77  EDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRD 136

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                     +K K +   + + L        Y E SA +    +  F
Sbjct: 137 DPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  109 bits (273), Expect = 9e-30
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 17/173 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ
Sbjct: 34  SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVKGKPVHLHIWDTAGQ 92

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           + +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D++ 
Sbjct: 93  DDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRK 152

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 169
                   R+   + VT+HR + +        Y E SA+ + N    F   A 
Sbjct: 153 DKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAE 205

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  108 bits (271), Expect = 2e-29
 Identities = 48/168 (28%), Positives = 78/168 (46%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KLVIVGDG  GKT  +      +F + Y PT+  E +  D   +  ++    WDTAGQ
Sbjct: 25  RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVF-ENYIADIEVDGKQVELALWDTAGQ 83

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F + +  + +N+P  W  ++   C N+PI+L GNK D++ 
Sbjct: 84  EDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQ 143

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                    ++K + V     +++        Y E SAK+     + F
Sbjct: 144 DEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score =  106 bits (266), Expect = 5e-29
 Identities = 40/161 (24%), Positives = 67/161 (41%), Gaps = 17/161 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 9   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPY 67

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++   
Sbjct: 68  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 127

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                    +   V++ +  N+        Y E SA  + N
Sbjct: 128 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  105 bits (265), Expect = 1e-28
 Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 17/166 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV+VGDG  GKT  +      EF + Y PT+  E +  D   +  ++    WDTAGQE 
Sbjct: 27  KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV-FENYVADIEVDGKQVELALWDTAGQED 85

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN-- 131
           +  LR   Y      ++ F V +  + +N+P  W  ++   C N+PI+L  NK D+++  
Sbjct: 86  YDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE 145

Query: 132 ------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 164
                  ++K + V     + +        Y E SAK+     + F
Sbjct: 146 HVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score =  104 bits (261), Expect = 4e-28
 Identities = 40/163 (24%), Positives = 67/163 (41%), Gaps = 17/163 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G 
Sbjct: 28  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGS 86

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
             +  +R   Y      +I FD++   T  +V   W  ++   C N  ++L G K D++ 
Sbjct: 87  PYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
                      +   V++ +  N+        Y E SA  + N
Sbjct: 147 DVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  103 bits (259), Expect = 6e-28
 Identities = 44/168 (26%), Positives = 79/168 (47%), Gaps = 17/168 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV   W+ ++   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 --------RQVKAKQVTFH-------RKKNLQYYEISAKSNYNFEKPF 164
                   ++ K   +T+            ++Y E SA +    +  F
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 99.6 bits (248), Expect = 4e-26
 Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 17/161 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KLV+VGD   GKT  ++      + + Y PT+  E +     T   ++    WDT+G 
Sbjct: 27  RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVF-ENYTACLETEEQRVELSLWDTSGS 85

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN 131
             +  +R   Y      ++ FD++   T  +    W  ++   C +  ++L G K D++ 
Sbjct: 86  PYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145

Query: 132 --------RQVKAKQVTFHRKKNL-------QYYEISAKSN 157
                      K   +++ +   +        Y E SA ++
Sbjct: 146 DLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTS 186

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 88.5 bits (219), Expect = 1e-21
 Identities = 34/177 (19%), Positives = 60/177 (33%), Gaps = 19/177 (10%)

Query: 5   NQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH---PLDFFTNCGK 61
           ++   D    K+ IV      +T F+           +  T               +  K
Sbjct: 86  SRSLEDCVECKMHIVE-----QTEFIDDQTFQP----HRSTALQPYIKRAAATKLASAEK 136

Query: 62  IRFYCWDTAGQEKF--GGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVC-- 115
           + ++C D  G E+           +     ++  DV+      + +   +  +L      
Sbjct: 137 LMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK 196

Query: 116 ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              PIV+   K D    R ++        KKNLQ  E SA+SN N +  F  L + +
Sbjct: 197 TKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 80.2 bits (198), Expect = 6e-19
 Identities = 36/163 (22%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 13  SFKLVIVGDGGTGKTTFVKR-------HLTGE---FEKKYEPTIGVEVHPLDFFTNCG-K 61
           +FK+V  G G +GKTT +K           GE      + E T+  +  PLD     G K
Sbjct: 14  NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFK 73

Query: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
            RF+ +   GQ  +   R          + + D        N  +       + E     
Sbjct: 74  TRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTL 133

Query: 117 -NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKS 156
            ++PIV+  NK D+ +  +  + V      +      E  A  
Sbjct: 134 DDVPIVIQVNKRDLPDA-LPVEMVRAVVDPEGKFPVLEAVATE 175

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 79.3 bits (195), Expect = 9e-18
 Identities = 42/172 (24%), Positives = 75/172 (43%), Gaps = 17/172 (9%)

Query: 4   PNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR 63
            N         K V+VGDG  GKT  +  + T  F  +Y PT+  + +  +   +   + 
Sbjct: 146 ENIDEAAKELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVN 204

Query: 64  FYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVL 122
              WDTAG E +  LR   Y      +I F + +  ++ +V   W+ ++   C N PI+L
Sbjct: 205 LGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIIL 264

Query: 123 CGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYN 159
            G K+D+++        ++ K   +T+ +   +       +Y E SA +   
Sbjct: 265 VGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 316

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 67.7 bits (165), Expect = 1e-13
 Identities = 34/189 (17%), Positives = 71/189 (37%), Gaps = 26/189 (13%)

Query: 15  KLVIVGDGGTGKTTFVKR---HLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           KL+++G  G+GK++       + +    ++   TI VE   L F  N   +    WD  G
Sbjct: 5   KLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGN---MTLNLWDCGG 61

Query: 72  QEKF-----GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR---DLCRVCENIPIVLC 123
           Q+ F        +D  +   Q  I +FDV +    K++  + +    L +   +  I + 
Sbjct: 62  QDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVL 121

Query: 124 GNKVDV----------KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
            +K+D+          +       + +            ++  + +  K +  +   L  
Sbjct: 122 LHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWDESLYKAWSQIVCSLI- 180

Query: 174 DPNLHFVES 182
            PN+   +S
Sbjct: 181 -PNMSNHQS 188

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 60.8 bits (147), Expect = 8e-12
 Identities = 18/122 (14%), Positives = 39/122 (31%), Gaps = 11/122 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           +++++G   +GK++  K              E T  +    +   +    + F  WD  G
Sbjct: 22  RILLMGLRRSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISNSSF---VNFQIWDFPG 78

Query: 72  QEKFGGL---RDGYYIHGQCAIIMFDVTARLT--YKNVPTWHRDLCRVCENIPIVLCGNK 126
           Q  F       +  +      I + D           +        +V  ++   +  +K
Sbjct: 79  QMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHK 138

Query: 127 VD 128
           VD
Sbjct: 139 VD 140

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 12/123 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 23  MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQP 78

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  + + Y       + M D   +   + +     +L  + +      IP+++ GNK D
Sbjct: 79  RFRSMWERYCRGVSAIVYMVDAADQ---EKIEASKNELHNLLDKPQLQGIPVLVLGNKRD 135

Query: 129 VKN 131
           +  
Sbjct: 136 LPG 138

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+
Sbjct: 30  MRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNICFTVWDVGGQD 84

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K   L   Y+ + Q  I + D   R   + V     +L ++ +     +  +++  NK D
Sbjct: 85  KIRPLWRHYFQNTQGLIFVVDSNDR---ERVQESADELQKMLQEDELRDAVLLVFANKQD 141

Query: 129 VKN 131
           + N
Sbjct: 142 MPN 144

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE     +PTIG  V  L +      ++   WD  GQ 
Sbjct: 19  LRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGFNVETLSY----KNLKLNVWDLGGQT 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY      I + D T +     + T  ++L  + +     +  +++  NK D
Sbjct: 74  SIRPYWRCYYADTAAVIFVVDSTDK---DRMSTASKELHLMLQEEELQDAALLVFANKQD 130

Query: 129 VKN 131
              
Sbjct: 131 QPG 133

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 17  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 72  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 128

Query: 129 VKN 131
           VK 
Sbjct: 129 VKE 131

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 56.5 bits (137), Expect = 3e-10
 Identities = 24/123 (19%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +    PT+G  +  L+        +   WD  GQ+
Sbjct: 19  LRLLMLGLDNAGKTTILKKFNGEDVDTI-SPTLGFNIKTLEH----RGFKLNIWDVGGQK 73

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D   R   + +    R+L  +          +++  NK D
Sbjct: 74  SLRSYWRNYFESTDGLIWVVDSADR---QRMQDCQRELQSLLVEERLAGATLLIFANKQD 130

Query: 129 VKN 131
           +  
Sbjct: 131 LPG 133

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE      PTIG  V  +++      I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVETVEY----KNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              L   Y+ + Q  I + D   R   + V     +L R+       +  +++  NK D+
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDELRDAVLLVFANKQDL 113

Query: 130 KN 131
            N
Sbjct: 114 PN 115

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 56.0 bits (136), Expect = 3e-10
 Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  + +      ++F  WD  G  
Sbjct: 8   MRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNVETVTY----KNLKFQVWDLGGLT 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   YY +    I + D   R     +     +L  + E        +V+  NK D
Sbjct: 63  SIRPYWRCYYSNTDAVIYVVDSCDR---DRIGISKSELVAMLEEEELRKAILVVFANKQD 119

Query: 129 VKN 131
           ++ 
Sbjct: 120 MEQ 122

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.9 bits (133), Expect = 1e-09
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKT+ + R   G+      PT+GV +  L +      I F  WD  GQ 
Sbjct: 23  IRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETLQY----KNISFEVWDLGGQT 77

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                   Y+      I + D T R     +     +L  + +        +++  NK D
Sbjct: 78  GVRPYWRCYFSDTDAVIYVVDSTDR---DRMGVAKHELYALLDEDELRKSLLLIFANKQD 134

Query: 129 VKN 131
           + +
Sbjct: 135 LPD 137

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 54.6 bits (132), Expect = 1e-09
 Identities = 33/123 (26%), Positives = 51/123 (41%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +    E      PTIG  V  +         RF  WD  GQE
Sbjct: 22  HKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSNVEEIVI----NNTRFLMWDIGGQE 76

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
                 + YY + +  I++ D T R   + +     +L ++          +++  NK D
Sbjct: 77  SLRSSWNTYYTNTEFVIVVVDSTDR---ERISVTREELYKMLAHEDLRKAGLLIFANKQD 133

Query: 129 VKN 131
           VK 
Sbjct: 134 VKE 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 13/122 (10%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KLV +G    GKTT +          ++ PT+      L        + F  +D  G  +
Sbjct: 27  KLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSEELTI----AGMTFTTFDLGGHIQ 81

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVDV 129
              +   Y       + + D       + +     +L  +       N+PI++ GNK+D 
Sbjct: 82  ARRVWKNYLPAINGIVFLVDCADH---ERLLESKEELDSLMTDETIANVPILILGNKIDR 138

Query: 130 KN 131
             
Sbjct: 139 PE 140

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 52.6 bits (127), Expect = 5e-09
 Identities = 25/123 (20%), Positives = 48/123 (39%), Gaps = 13/123 (10%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT +K+  + +      PT G  +  +         +   WD  GQ 
Sbjct: 17  VRILLLGLDNAGKTTLLKQLASEDISHI-TPTQGFNIKSVQS----QGFKLNVWDIGGQR 71

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           K       Y+ +    I + D   R   K      ++L  + E      +P+++  NK D
Sbjct: 72  KIRPYWRSYFENTDILIYVIDSADR---KRFEETGQELTELLEEEKLSCVPVLIFANKQD 128

Query: 129 VKN 131
           +  
Sbjct: 129 LLT 131

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 52.7 bits (127), Expect = 6e-09
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 15/126 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             ++ +G   +GKTT + +      +     PTIG  +           + F  +D +GQ
Sbjct: 22  VHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKS----SSLSFTVFDMSGQ 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-------NIPIVLCGN 125
            ++  L + YY  GQ  I + D + R     +     +L  +          IPI+   N
Sbjct: 78  GRYRNLWEHYYKEGQAIIFVIDSSDR---LRMVVAKEELDTLLNHPDIKHRRIPILFFAN 134

Query: 126 KVDVKN 131
           K+D+++
Sbjct: 135 KMDLRD 140

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 49.1 bits (118), Expect = 1e-07
 Identities = 26/124 (20%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             KL+ +G    GKTT +            +PT       L      G I+F  +D  G 
Sbjct: 23  HGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTSEELAI----GNIKFTTFDLGGH 77

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKV 127
            +   L   Y+      + + D       +       +L  +       ++P V+ GNK+
Sbjct: 78  IQARRLWKDYFPEVNGIVFLVDAADP---ERFDEARVELDALFNIAELKDVPFVILGNKI 134

Query: 128 DVKN 131
           D  N
Sbjct: 135 DAPN 138

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 Length = 214

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 24/126 (19%), Positives = 40/126 (31%), Gaps = 14/126 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++      +I           N         D  G E 
Sbjct: 9   AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDSSAIYK-VNNNRGNSLTLIDLPGHES 66

Query: 75  FGGLRDGYYIH--GQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-------IPIVLCGN 125
              LR             ++F V +    + V      L +V  +         +++  N
Sbjct: 67  ---LRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACN 123

Query: 126 KVDVKN 131
           K D+  
Sbjct: 124 KQDIAM 129

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 331

 Score = 44.7 bits (105), Expect = 8e-06
 Identities = 19/122 (15%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           ++++G    GK++  K  +    +       E T    +           I     +  G
Sbjct: 2   VLLMGVRRCGKSSICKV-VFHNMQPLDTLYLESTSNPSLEHFSTL-----IDLAVMELPG 55

Query: 72  QEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRD----LCRVCENIPIVLCGNK 126
           Q  +     D   +      +++ + ++  Y N  T          +V  +I I +  +K
Sbjct: 56  QLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHK 115

Query: 127 VD 128
           VD
Sbjct: 116 VD 117

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 18/128 (14%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++I G   +GKT+ +    T         +   +     D             D  G  
Sbjct: 50  SIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAADYD------GSGVTLVDFPGHV 102

Query: 74  KFGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLC 123
           K       Y       +  ++F V + +  K + T    L  +           I I++ 
Sbjct: 103 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 162

Query: 124 GNKVDVKN 131
            NK ++  
Sbjct: 163 CNKSELFT 170

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 18/127 (14%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG-VEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++I G   +GKT+ +    T         +   +         +         D  G  K
Sbjct: 15  IIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSA------ADYDGSGVTLVDFPGHVK 67

Query: 75  FGGLRDGYYIHGQCAI--IMFDVTARLTYKNVPTWHRDLCRV--------CENIPIVLCG 124
                  Y       +  ++F V + +  K + T    L  +           I I++  
Sbjct: 68  LRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIAC 127

Query: 125 NKVDVKN 131
           NK ++  
Sbjct: 128 NKSELFT 134

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} Length = 427

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 13  SFKLVIVGDGGTGKTTFV----KRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
            F ++ VG+ G GK+T +         GE     +P + ++ +  D   +  +++     
Sbjct: 42  CFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101

Query: 69  TAG 71
           T G
Sbjct: 102 TVG 104

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 13/136 (9%)

Query: 1   MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG 60
                +        ++++VG    GKTT + +   GE      PTIG  V  +++     
Sbjct: 153 TPPQPRGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVETVEY----K 207

Query: 61  KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE---- 116
            I F  WD  GQ+K   L   Y+ + Q  I + D   R   + V     +L R+      
Sbjct: 208 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR---ERVNEAREELMRMLAEDEL 264

Query: 117 -NIPIVLCGNKVDVKN 131
            +  +++  NK D+ N
Sbjct: 265 RDAVLLVFANKQDLPN 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	100.0
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	100.0
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	100.0
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	100.0
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	100.0
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	100.0
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	100.0
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	100.0
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	100.0
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	100.0
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	100.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	100.0
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	100.0
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	100.0
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	100.0
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.98
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.98
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.98
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.98
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.98
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.98
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.98
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.98
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.98
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.97
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.97
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.97
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.97
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.97
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.97
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.97
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.97
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.97
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.97
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.97
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.97
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.97
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.97
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.97
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.97
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.97
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.97
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.97
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.97
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.97
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.97
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.97
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.97
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.97
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.97
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.97
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.97
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.97
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.97
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.97
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.97
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.97
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.97
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.97
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.97
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.97
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.97
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.97
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.97
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.97
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.97
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.97
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.97
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.97
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.97
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.97
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.97
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.97
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.97
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.97
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.97
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.97
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.97
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.97
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.97
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.97
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.97
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.97
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.97
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.96
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.96
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.96
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.96
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.96
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.96
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.96
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.95
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.95
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.92
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.95
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.95
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.95
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.94
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.94
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.94
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.94
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.93
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.93
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.93
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.93
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.93
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.93
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.93
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.92
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.92
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.92
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.9
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.89
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.89
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.88
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.88
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.87
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.87
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.87
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.87
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.86
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.86
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.86
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.86
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.86
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.85
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.85
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.85
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.85
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.84
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.84
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.84
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.84
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.83
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.83
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.83
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.83
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.83
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.83
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.83
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.82
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.82
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.82
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.81
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.81
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.81
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.81
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.8
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.8
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.79
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.79
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.77
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.77
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.76
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.75
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.74
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.73
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.73
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.72
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.72
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.69
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.69
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.69
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.67
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.67
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.66
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.63
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.6
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.6
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.58
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.57
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.56
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.52
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.51
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.5
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.5
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.49
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.36
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.32
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.27
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.26
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.11
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.06
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.05
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.01
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.96
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.94
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.93
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.91
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.9
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.9
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.89
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.89
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.88
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.87
1g6h_A	257	High-affinity branched-chain amino acid transport	98.86
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.86
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.85
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.83
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.82
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.81
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.81
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.81
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.8
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.8
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.79
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.78
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.78
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.77
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.77
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.76
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.76
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.74
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.74
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.74
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.72
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.72
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.71
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.7
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.7
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.7
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.69
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.68
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.61
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.6
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.55
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.54
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.51
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.5
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.5
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.48
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.45
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.45
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.44
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.41
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.4
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.39
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.38
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.38
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.38
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.38
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.37
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.34
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.33
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.32
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.32
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.32
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.31
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.29
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.27
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.26
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.24
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.23
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.18
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.17
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.16
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.15
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.07
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.03
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.01
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.96
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.94
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.9
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.88
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.77
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.76
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.74
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.72
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.72
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.72
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.72
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.7
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.69
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	97.69
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.68
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.67
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.64
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.64
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.64
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.61
2xxa_A	433	Signal recognition particle protein; protein trans	97.56
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.54
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.52
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.5
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.48
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.48
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.47
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.47
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.45
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.44
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.43
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.42
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.42
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.4
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.39
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.38
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.38
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.37
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.35
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.34
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.32
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.31
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.3
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.3
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.29
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.29
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.28
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.28
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.27
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.26
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.25
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.24
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.24
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.23
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.21
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.21
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.19
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.19
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.18
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.18
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.17
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.17
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.17
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.16
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.16
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.15
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.15
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.14
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.14
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.14
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.14
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.14
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.14
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.13
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.12
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.12
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.12
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.12
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.12
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.11
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.11
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.11
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.1
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.09
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.07
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.06
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.06
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.05
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.05
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.05
1via_A	175	Shikimate kinase; structural genomics, transferase	97.05
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.04
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.04
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.03
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.03
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.02
2og2_A	359	Putative signal recognition particle receptor; nuc	97.0
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.0
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.99
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.99
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.98
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.97
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.96
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.95
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.95
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.93
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.93
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.93
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.93
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.93
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.92
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.91
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.91
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.9
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.9
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.9
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.89
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.87
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.85
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.85
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.83
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.81
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.81
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.81
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.79
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.79
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.79
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.79
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.77
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.77
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.77
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.76
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.76
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.74
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.74
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.72
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.69
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.69
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.66
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.66
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.64
3bos_A	242	Putative DNA replication factor; P-loop containing	96.64
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.64
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.64
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.63
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.62
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.59
3end_A	307	Light-independent protochlorophyllide reductase ir	96.57
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.55
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.55
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	96.51
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	96.5
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.48
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.47
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.47
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.45
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.44
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	96.43
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.42
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.42
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.39
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.39
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.39
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.38
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.38
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.38
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.38
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.38
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.35
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.35
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.35
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.34
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.33
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.32
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.32
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.3
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.29
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.27
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	96.26
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.26
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.25
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.24
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.21
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.21
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.2
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.17
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.14
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.14
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.14
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.11
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.09
3co5_A	143	Putative two-component system transcriptional RES	96.07
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.03
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.02
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.98
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.97
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.96
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.95
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	95.93
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.91

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=100.00  E-value=1.1e-37  Score=233.22  Aligned_cols=211  Identities=76%  Similarity=1.236  Sum_probs=188.5

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.......+.+..+.+.+|||+|++.+..++..+++++|
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   89 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQ   89 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCC
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCC
Confidence            45567899999999999999999998888888888999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ++++|||+++..++..+..|+..+.....+.|+++|+||+|+.++....+...++...++.++++|+++|.|++++|.+|
T Consensus        90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  169 (221)
T 3gj0_A           90 CAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWL  169 (221)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999999999988878999999999999987766666667888889999999999999999999999


Q ss_pred             HHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCCCCCCc
Q 027607          168 ARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDEDDD  218 (221)
Q Consensus       168 ~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (221)
                      .+.+...+.......|...+++...+....++....++..+...++++|||
T Consensus       170 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  220 (221)
T 3gj0_A          170 ARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQTTALPDEDDD  220 (221)
T ss_dssp             HHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhhccCCCCCCCC
Confidence            999999999999999999999999999999999999999999999888776

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=100.00  E-value=7.8e-37  Score=227.11  Aligned_cols=167  Identities=29%  Similarity=0.537  Sum_probs=138.1

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ..+.+++||+|+|.+|||||||+++|+.+.+...+.+|.+.++..+...+++..+.+.+|||+|++++..++..|++.++
T Consensus         8 ~~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~   87 (216)
T 4dkx_A            8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSA   87 (216)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCS
T ss_pred             CCCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhcccc
Confidence            44568899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++++|||+++..+|+.+..|+..+.... ++.|+++|+||+|+.+. .+ ..++..++...++.|+++||++|.|++++|
T Consensus        88 ~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F  167 (216)
T 4dkx_A           88 AAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF  167 (216)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHH
T ss_pred             EEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHH
Confidence            9999999999999999999999987654 68999999999999753 33 345678899999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027607          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      +.|++.+...
T Consensus       168 ~~i~~~i~~~  177 (216)
T 4dkx_A          168 RRVAAALPGM  177 (216)
T ss_dssp             HHHHHHC---
T ss_pred             HHHHHHHHhh
Confidence            9999987643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=100.00  E-value=4e-32  Score=202.12  Aligned_cols=169  Identities=20%  Similarity=0.329  Sum_probs=141.1

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||+|++.+..++..+++.+
T Consensus        21 ~~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   99 (214)
T 3q3j_B           21 PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDS   99 (214)
T ss_dssp             ------CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred             CCCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence            34556789999999999999999999999998888888888665 45666777889999999999999999999999999


Q ss_pred             cEEEEEEECCChhhhcc-HHHHHHHHHhhcCCCCEEEEEeCCCcCCc--------------cccHHHHHHHhhcCC-eEE
Q 027607           87 QCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKNR--------------QVKAKQVTFHRKKNL-QYY  150 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--------------~~~~~~~~~~~~~~~-~~~  150 (221)
                      |++++|||+++..++.. +..|+..+.....+.|+++|+||+|+.+.              ....+...++...++ .++
T Consensus       100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  179 (214)
T 3q3j_B          100 DAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYL  179 (214)
T ss_dssp             SEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEE
T ss_pred             eEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEE
Confidence            99999999999999998 78999999888789999999999998652              233455678888888 999


Q ss_pred             EecccCCCC-hHHHHHHHHHHHhCCCC
Q 027607          151 EISAKSNYN-FEKPFLYLARKLAGDPN  176 (221)
Q Consensus       151 ~~s~~~~~g-v~~~~~~l~~~l~~~~~  176 (221)
                      ++||++|.| ++++|.+|++.+.....
T Consensus       180 e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          180 EGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             ECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             EeccCCCcccHHHHHHHHHHHHhccCc
Confidence            999999998 99999999998877653

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=100.00  E-value=1.4e-31  Score=194.17  Aligned_cols=166  Identities=32%  Similarity=0.532  Sum_probs=142.9

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+
T Consensus        12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~   90 (183)
T 3kkq_A           12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTG   90 (183)
T ss_dssp             --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHC
T ss_pred             CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcC
Confidence            34567889999999999999999999999888888888887666 66677788888999999999999999999999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cc-ccHHHHHHHhhcCCeEEEeccc-CCCChH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQ-VKAKQVTFHRKKNLQYYEISAK-SNYNFE  161 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~-~~~~~~~~~~~~~~~~~~~s~~-~~~gv~  161 (221)
                      |++++|||++++.++..+..|+..+...  ..+.|+++|+||+|+.+ +. ...+...++...+++++++|++ +|.|++
T Consensus        91 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~  170 (183)
T 3kkq_A           91 DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD  170 (183)
T ss_dssp             SEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence            9999999999999999999999888654  35889999999999865 22 3344567888888999999999 999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|.+.+.+
T Consensus       171 ~l~~~l~~~i~~  182 (183)
T 3kkq_A          171 KTFHDLVRVIRQ  182 (183)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            999999997753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=100.00  E-value=1.6e-31  Score=195.74  Aligned_cols=170  Identities=32%  Similarity=0.568  Sum_probs=150.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   91 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGV   91 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999988888888999888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|++++.++..+..|+..+....  .+.|+++|+||+|+..+... .+...++...++.++++|+++|.|++++|.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (195)
T 1x3s_A           92 ILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEE  171 (195)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence            99999999999999999998887654  47899999999999665443 4556777888899999999999999999999


Q ss_pred             HHHHHhCCCCCcc
Q 027607          167 LARKLAGDPNLHF  179 (221)
Q Consensus       167 l~~~l~~~~~~~~  179 (221)
                      |.+.+...+....
T Consensus       172 l~~~~~~~~~~~~  184 (195)
T 1x3s_A          172 LVEKIIQTPGLWE  184 (195)
T ss_dssp             HHHHHHTSGGGTC
T ss_pred             HHHHHHhhhhhhc
Confidence            9999988765443

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=191.80  Aligned_cols=164  Identities=32%  Similarity=0.554  Sum_probs=143.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+..+.+.+|||||++.+...+..++..+|++
T Consensus         6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   85 (181)
T 3tw8_B            6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV   85 (181)
T ss_dssp             CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence            34679999999999999999999998888777888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ++|+|++++.++..+..|+..+.....+.|+++|+||+|+.+...  ..+...++...+++++++|+++|.|++++|.+|
T Consensus        86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  165 (181)
T 3tw8_B           86 IVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCI  165 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            999999999999999999999988778899999999999865432  245567778888999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       166 ~~~~~~  171 (181)
T 3tw8_B          166 TELVLR  171 (181)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=100.00  E-value=2.2e-31  Score=190.32  Aligned_cols=163  Identities=30%  Similarity=0.596  Sum_probs=143.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   82 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV   82 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999998888778888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +|+|++++.++..+..|+..+.....+.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+|.
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  162 (168)
T 1z2a_A           83 LVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLA  162 (168)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHH
Confidence            999999999999999999888776678999999999998653 22 3445567777889999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       163 ~~~~~  167 (168)
T 1z2a_A          163 EKHLQ  167 (168)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98754

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=100.00  E-value=5.9e-32  Score=199.34  Aligned_cols=168  Identities=34%  Similarity=0.525  Sum_probs=136.9

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|
T Consensus        24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  103 (201)
T 2hup_A           24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSAN  103 (201)
T ss_dssp             --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCS
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCC
Confidence            33455799999999999999999999988887777788887777777788887899999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCC-eEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNL-QYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~  163 (221)
                      ++++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++ .++++||++|.|++++
T Consensus       104 ~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l  183 (201)
T 2hup_A          104 GAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA  183 (201)
T ss_dssp             EEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHH
Confidence            9999999999999999999998887765 67999999999999753 22 3455677778888 9999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 027607          164 FLYLARKLAGDP  175 (221)
Q Consensus       164 ~~~l~~~l~~~~  175 (221)
                      |.+|++.+....
T Consensus       184 ~~~l~~~i~~~~  195 (201)
T 2hup_A          184 FLRVATELIMRH  195 (201)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            999999886543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=100.00  E-value=3.3e-31  Score=191.10  Aligned_cols=165  Identities=32%  Similarity=0.623  Sum_probs=140.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   84 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   84 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence            46799999999999999999999998888788888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCcccc-HHHHHHHh-hcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVK-AKQVTFHR-KKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~-~~~~~~~~-~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|+++..++..+..|+..+....     .+.|+++|+||+|+..+... .+...++. ..+++++++|+++|.|++++
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  164 (177)
T 1wms_A           85 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHH
Confidence            9999999999999999988886653     57899999999999754443 34445555 56789999999999999999


Q ss_pred             HHHHHHHHhCCC
Q 027607          164 FLYLARKLAGDP  175 (221)
Q Consensus       164 ~~~l~~~l~~~~  175 (221)
                      |.+|.+.+...+
T Consensus       165 ~~~l~~~~~~~~  176 (177)
T 1wms_A          165 FEEAVRRVLATE  176 (177)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHhhc
Confidence            999999887643

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=100.00  E-value=1.9e-31  Score=190.98  Aligned_cols=163  Identities=33%  Similarity=0.588  Sum_probs=143.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+||+||++.+...+..++..+|++
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~   82 (170)
T 1r2q_A            3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAA   82 (170)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence            34679999999999999999999999888888888999888888888888889999999999999999989999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|++++.++..+..|+..+... ....|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  162 (170)
T 1r2q_A           83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA  162 (170)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence            9999999999999999998888765 358899999999998653 22 24556777788899999999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       163 i~~~~~  168 (170)
T 1r2q_A          163 IAKKLP  168 (170)
T ss_dssp             HHHTSC
T ss_pred             HHHHHh
Confidence            998654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=100.00  E-value=3.5e-31  Score=189.72  Aligned_cols=163  Identities=29%  Similarity=0.529  Sum_probs=136.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i   83 (170)
T 1z08_A            4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI   83 (170)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence            46799999999999999999999988887777888888887778888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  163 (170)
T 1z08_A           84 LVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDL  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876653 57999999999998653 22 345567777888999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+.+
T Consensus       164 ~~~~~~  169 (170)
T 1z08_A          164 CKRMIE  169 (170)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=100.00  E-value=4.6e-31  Score=193.38  Aligned_cols=167  Identities=25%  Similarity=0.400  Sum_probs=143.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++.. ...+++..+.+.+|||||++.+...+..+++++|+
T Consensus        19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   97 (194)
T 3reg_A           19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDV   97 (194)
T ss_dssp             --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcE
Confidence            34567999999999999999999999998887888888766554 56677788899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCC---cc-ccHHHHHHHhhcCCe-EEEecccCCCChHH
Q 027607           89 AIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN---RQ-VKAKQVTFHRKKNLQ-YYEISAKSNYNFEK  162 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~---~~-~~~~~~~~~~~~~~~-~~~~s~~~~~gv~~  162 (221)
                      +++|||++++.++..+ ..|+..+.....+.|+++|+||+|+.+   +. ...+...++...++. ++++||++|.|+++
T Consensus        98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  177 (194)
T 3reg_A           98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNE  177 (194)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHH
Confidence            9999999999999986 678888887777899999999999864   22 334556777788887 99999999999999


Q ss_pred             HHHHHHHHHhCCCC
Q 027607          163 PFLYLARKLAGDPN  176 (221)
Q Consensus       163 ~~~~l~~~l~~~~~  176 (221)
                      +|++|.+.+.....
T Consensus       178 l~~~l~~~i~~~~~  191 (194)
T 3reg_A          178 VFEKSVDCIFSNKP  191 (194)
T ss_dssp             HHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHhcCC
Confidence            99999999877653

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=100.00  E-value=4.7e-31  Score=192.90  Aligned_cols=166  Identities=31%  Similarity=0.541  Sum_probs=141.2

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   95 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAA   95 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCS
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCC
Confidence            34567899999999999999999999998887777788888888778888888899999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++++|+|+++..+++.+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|
T Consensus        96 ~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~  175 (191)
T 2a5j_A           96 GALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF  175 (191)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence            9999999999999999999998887653 58999999999998653 22 344557777888999999999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      .+|++.+.+
T Consensus       176 ~~l~~~i~~  184 (191)
T 2a5j_A          176 INTAKEIYR  184 (191)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998754

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=100.00  E-value=3.1e-31  Score=191.45  Aligned_cols=164  Identities=33%  Similarity=0.530  Sum_probs=143.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus        12 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   91 (179)
T 1z0f_A           12 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA   91 (179)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence            34579999999999999999999999988887888888888888888888889999999999999998889999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|.+
T Consensus        92 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  171 (179)
T 1z0f_A           92 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLE  171 (179)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999998887664 58899999999998643 22 34556777788999999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+.+
T Consensus       172 l~~~i~~  178 (179)
T 1z0f_A          172 AAKKIYQ  178 (179)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHhh
Confidence            9998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=100.00  E-value=2.1e-31  Score=190.70  Aligned_cols=161  Identities=33%  Similarity=0.597  Sum_probs=141.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence            57999999999999999999999998887888899988888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc----ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~----~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      |+|++++.++..+..|+..+.... .+.|+++|+||+|+...    ... .+...++...++.++++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  161 (170)
T 1ek0_A           82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence            999999999999999998887664 58899999999998643    222 344567777889999999999999999999


Q ss_pred             HHHHHHh
Q 027607          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      +|.+.+.
T Consensus       162 ~l~~~i~  168 (170)
T 1ek0_A          162 GIGEKIP  168 (170)
T ss_dssp             HHHTTSC
T ss_pred             HHHHHHh
Confidence            9987653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.98  E-value=7e-31  Score=192.47  Aligned_cols=167  Identities=30%  Similarity=0.541  Sum_probs=147.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   91 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG   91 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence            34567999999999999999999999998888888899888888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-cc-HHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+.. .. .+...++...+++++++||++|.|++++|.
T Consensus        92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~  171 (196)
T 3tkl_A           92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  171 (196)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887764 478999999999986543 22 455677888899999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027607          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      +|.+.+....
T Consensus       172 ~l~~~i~~~~  181 (196)
T 3tkl_A          172 TMAAEIKKRM  181 (196)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHh
Confidence            9999887643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.98  E-value=4.4e-31  Score=191.12  Aligned_cols=164  Identities=33%  Similarity=0.544  Sum_probs=143.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++++.+.+...+.++.+.++......+.+..+.+.+|||||++.+...+..+++.+|++
T Consensus         9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   88 (181)
T 2efe_B            9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAA   88 (181)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEE
T ss_pred             CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEE
Confidence            45679999999999999999999999888877778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+
T Consensus        89 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~  168 (181)
T 2efe_B           89 IIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE  168 (181)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence            99999999999999999998887764 58899999999998643 22 34556677788899999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+..
T Consensus       169 l~~~~~~  175 (181)
T 2efe_B          169 IARRLPR  175 (181)
T ss_dssp             HHHTCC-
T ss_pred             HHHHHHh
Confidence            9987644

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.98  E-value=1.7e-30  Score=189.56  Aligned_cols=163  Identities=25%  Similarity=0.526  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ...+||+|+|++|||||||+++|+.+.+...+.++.+.++........+..+.+.+|||||++.+...+..++..+|+++
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii   99 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFL   99 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEE
Confidence            34699999999999999999999998887777888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...++.++++|+++|.|++++|.+|
T Consensus       100 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  179 (189)
T 2gf9_A          100 LMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERL  179 (189)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence            9999999999999999998887764 589999999999986532 2 234567777788999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+.+
T Consensus       180 ~~~i~~  185 (189)
T 2gf9_A          180 VDVICE  185 (189)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=5.4e-31  Score=194.12  Aligned_cols=163  Identities=34%  Similarity=0.608  Sum_probs=143.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  103 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI  103 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            35699999999999999999999999888788888888888888888888899999999999999988999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||+++..++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...++.++++||++|.|++++|.+|
T Consensus       104 ~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l  183 (201)
T 2ew1_A          104 LTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDL  183 (201)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887664 47899999999998643 23 334556677788999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++.+..
T Consensus       184 ~~~i~~  189 (201)
T 2ew1_A          184 ACRLIS  189 (201)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.98  E-value=7e-31  Score=188.07  Aligned_cols=162  Identities=28%  Similarity=0.520  Sum_probs=143.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++++.+.+...+.++.+.++......+.+....+.+|||||.+.+...+..+++.+|+++
T Consensus         4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i   83 (170)
T 1z0j_A            4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI   83 (170)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence            45799999999999999999999999888888899998888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|++++.++..+..|+..+... .+..|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|.+|
T Consensus        84 ~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i  163 (170)
T 1z0j_A           84 IVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI  163 (170)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            999999999999999998888776 367899999999998653 22 334556777788999999999999999999999


Q ss_pred             HHHHh
Q 027607          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      .+.+.
T Consensus       164 ~~~i~  168 (170)
T 1z0j_A          164 SRRIP  168 (170)
T ss_dssp             HHHCC
T ss_pred             HHHHh
Confidence            98764

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.98  E-value=3.7e-31  Score=193.66  Aligned_cols=164  Identities=29%  Similarity=0.499  Sum_probs=144.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+....+.+|||||++.+...+..+++.+|+++
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii  100 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAV  100 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEE
Confidence            45799999999999999999999998887788899999988888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+ +.. ..+...++...+++++++|+++|.|++++|.+|
T Consensus       101 lV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  180 (192)
T 2fg5_A          101 IVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGI  180 (192)
T ss_dssp             EEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHH
Confidence            9999999999999999998887764 4789999999999865 222 345567777888999999999999999999999


Q ss_pred             HHHHhCC
Q 027607          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+.+.
T Consensus       181 ~~~i~~~  187 (192)
T 2fg5_A          181 SRQIPPL  187 (192)
T ss_dssp             HHTCC--
T ss_pred             HHHHHhh
Confidence            9976543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.98  E-value=7.9e-31  Score=189.93  Aligned_cols=164  Identities=24%  Similarity=0.323  Sum_probs=142.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i   82 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   82 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence            3679999999999999999999998988888888888776 666777888889999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||+++..+++.+..|+..+....  .+.|+++|+||+|+....  ...+...++...+++++++||++|.|++++|.+
T Consensus        83 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~  162 (181)
T 3t5g_A           83 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  162 (181)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998886653  478999999999985432  234566788888999999999999999999999


Q ss_pred             HHHHHhCCC
Q 027607          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |.+.+....
T Consensus       163 l~~~~~~~~  171 (181)
T 3t5g_A          163 IILEAEKMD  171 (181)
T ss_dssp             HHHHHHTC-
T ss_pred             HHHHHHHhc
Confidence            999987754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.98  E-value=3.4e-31  Score=191.23  Aligned_cols=166  Identities=25%  Similarity=0.448  Sum_probs=141.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC-cEEEEEEEecCCccccccccccccccccE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+.+ ....+.+|||||++.+...+..+++.+|+
T Consensus         3 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   82 (178)
T 2hxs_A            3 HMRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG   82 (178)
T ss_dssp             CCCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred             CCceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence            34679999999999999999999998887777778888777777777776 46899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc---CCCC-EEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC---ENIP-IVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p-~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +++|+|++++.+++.+..|+..+....   ...| +++|+||+|+.+. .. ..+...++...+++++++||++|.|+++
T Consensus        83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  162 (178)
T 2hxs_A           83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFL  162 (178)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence            999999999999999999988876643   2555 7999999999653 23 3345567777889999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027607          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|.+|.+.+...+
T Consensus       163 l~~~l~~~~~~~~  175 (178)
T 2hxs_A          163 CFQKVAAEILGIK  175 (178)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999887654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.98  E-value=6.4e-31  Score=188.27  Aligned_cols=163  Identities=27%  Similarity=0.545  Sum_probs=136.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++++.+.+...+.++.+.++......+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   81 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL   81 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence            45899999999999999999999888877777888877777777778778999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |+|++++.++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++||++|.|++++|.+|.+
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~  161 (170)
T 1g16_A           82 VYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAK  161 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHH
Confidence            999999999999999998887764 57899999999999654443 3445677778899999999999999999999999


Q ss_pred             HHhCC
Q 027607          170 KLAGD  174 (221)
Q Consensus       170 ~l~~~  174 (221)
                      .+.+.
T Consensus       162 ~~~~~  166 (170)
T 1g16_A          162 LIQEK  166 (170)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            87653

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.98  E-value=8.5e-31  Score=190.97  Aligned_cols=163  Identities=21%  Similarity=0.341  Sum_probs=135.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .+.+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||+|++.+..+ ..+++.+|+
T Consensus        17 ~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~   94 (187)
T 3c5c_A           17 QGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHA   94 (187)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred             CCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence            356779999999999999999999999988888888888665 445667888899999999999888775 678999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecc-cCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISA-KSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~-~~~~gv~  161 (221)
                      +++|||++++.++..+..|+..+....    .+.|+++|+||+|+.+. .. ..+...++...++.++++|| ++|.|++
T Consensus        95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~  174 (187)
T 3c5c_A           95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ  174 (187)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence            999999999999999999998887653    58999999999998653 23 34566788888999999999 8999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|++.+.+
T Consensus       175 ~lf~~l~~~i~~  186 (187)
T 3c5c_A          175 HVFHEAVREARR  186 (187)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhh
Confidence            999999987753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=1.3e-30  Score=190.83  Aligned_cols=162  Identities=24%  Similarity=0.372  Sum_probs=138.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i   94 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFL   94 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEE
Confidence            4679999999999999999999999888777777776554 445666777789999999999999999999999999999


Q ss_pred             EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEEecc
Q 027607           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~  154 (221)
                      +|||++++.++..+. .|+..+....++.|+++|+||+|+.+.             .. ..+...++...++ .++++||
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  174 (194)
T 2atx_A           95 ICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA  174 (194)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeC
Confidence            999999999999887 788888877778999999999998653             22 2345566777776 8999999


Q ss_pred             cCCCChHHHHHHHHHHHhC
Q 027607          155 KSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~  173 (221)
                      ++|.|++++|.+|.+.+..
T Consensus       175 ~~g~gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          175 LTQKGLKTVFDEAIIAILT  193 (194)
T ss_dssp             TTCTTHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHhc
Confidence            9999999999999998753

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.97  E-value=3.5e-31  Score=194.85  Aligned_cols=166  Identities=27%  Similarity=0.510  Sum_probs=131.8

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+++..+.+.+|||||++.+...+..+++.+|
T Consensus        23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d  102 (199)
T 2p5s_A           23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKAD  102 (199)
T ss_dssp             -----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred             cCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence            34566799999999999999999999998887778888888888888888888899999999999999888889999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCC-------ccc-cHHHHHHHhhcCCeEEEecccCCC
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-------RQV-KAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~-------~~~-~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+       +.. ..+...++...++.++++||++|.
T Consensus       103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~  182 (199)
T 2p5s_A          103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS  182 (199)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred             EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence            9999999999999999999988887654 4789999999999852       222 234456777788999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027607          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 gv~~~~~~l~~~l~~  173 (221)
                      |++++|.+|++.+..
T Consensus       183 gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          183 NIVEAVLHLAREVKK  197 (199)
T ss_dssp             THHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.5e-30  Score=190.42  Aligned_cols=164  Identities=29%  Similarity=0.505  Sum_probs=143.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||.+.+...+..+++.+|++
T Consensus        22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v  101 (193)
T 2oil_A           22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA  101 (193)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence            34569999999999999999999999888877788888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|+|++++.++..+..|+..+.... .+.|+++|+||+|+... . ...+...++...++.++++||++|.|++++|.+
T Consensus       102 i~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  181 (193)
T 2oil_A          102 LLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFET  181 (193)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence            99999999999999999988886653 57899999999998653 2 234455677778899999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+..
T Consensus       182 l~~~i~~  188 (193)
T 2oil_A          182 VLKEIFA  188 (193)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.97  E-value=8.4e-31  Score=190.53  Aligned_cols=161  Identities=21%  Similarity=0.394  Sum_probs=134.1

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+++||+|+|++|||||||+++++.+.+...+.++.+  .+...+.+++..+.+.+|||+|++.+.     +++.+
T Consensus        14 ~~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~   86 (184)
T 3ihw_A           14 LYFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG--RFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWV   86 (184)
T ss_dssp             --CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE--EEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred             CCCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc--eEEEEEEECCEEEEEEEEECCCChhhh-----eecCC
Confidence            35677899999999999999999999999988777777643  334677788888999999999988765     78889


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcC---Ccccc-HHHHHHHhhcC-CeEEEecccCCCC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKKN-LQYYEISAKSNYN  159 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~---~~~~~-~~~~~~~~~~~-~~~~~~s~~~~~g  159 (221)
                      |++++|||++++.+|+.+..|+..+....  .+.|+++|+||+|+.   .+... .+...++...+ +.++++||++|.|
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g  166 (184)
T 3ihw_A           87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN  166 (184)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence            99999999999999999999999887653  478999999999984   22333 34556777776 8999999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 027607          160 FEKPFLYLARKLAGD  174 (221)
Q Consensus       160 v~~~~~~l~~~l~~~  174 (221)
                      ++++|.+|++.+...
T Consensus       167 v~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          167 VERVFQDVAQKVVAL  181 (184)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999987653

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.7e-30  Score=186.83  Aligned_cols=165  Identities=28%  Similarity=0.566  Sum_probs=134.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+. ..+.++.+.++......+++..+.+.+|||||++.+...+..++..+|+
T Consensus         7 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   86 (180)
T 2g6b_A            7 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA   86 (180)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence            456799999999999999999999988874 4567788888777777788888899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +++|+|++++.++..+..|+..+.... .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|.
T Consensus        87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~  166 (180)
T 2g6b_A           87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFT  166 (180)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence            999999999999999999998887765 589999999999987532 2 3345567777789999999999999999999


Q ss_pred             HHHHHHhCC
Q 027607          166 YLARKLAGD  174 (221)
Q Consensus       166 ~l~~~l~~~  174 (221)
                      +|.+.+...
T Consensus       167 ~l~~~~~~~  175 (180)
T 2g6b_A          167 AIAKELKRR  175 (180)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999988654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.97  E-value=6.4e-31  Score=196.02  Aligned_cols=177  Identities=45%  Similarity=0.818  Sum_probs=147.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccccccccccccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+..........+ .+.+.+|||+|++.+...+..++..+|
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   86 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS   86 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence            3457899999999999999999998888888788888888877777665544 388999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhcC-CCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++++|+|+++..++..+..|+..+..... +.|+++|+||+|+.+. ... .....++...++.++++||++|.|++++|
T Consensus        87 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~  166 (218)
T 4djt_A           87 GAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPF  166 (218)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHH
T ss_pred             EEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHH
Confidence            99999999999999999999988877653 5899999999998764 333 33446777888999999999999999999


Q ss_pred             HHHHHHHhCCCCCccccCCCC
Q 027607          165 LYLARKLAGDPNLHFVESPAL  185 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~ep~~  185 (221)
                      .+|++.+...........+..
T Consensus       167 ~~l~~~~~~~~~~~~~~~~~~  187 (218)
T 4djt_A          167 LHLARIFTGRPDLIFVSNVNL  187 (218)
T ss_dssp             HHHHHHHHCCTTCCBCSCCCC
T ss_pred             HHHHHHHhcccccccccccCc
Confidence            999999988877665544433

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.97  E-value=4.1e-31  Score=191.75  Aligned_cols=162  Identities=30%  Similarity=0.574  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~   86 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIML   86 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEE
Confidence            57999999999999999999998887776677788877777777788888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|.+|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~  166 (183)
T 2fu5_C           87 VYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLA  166 (183)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999999998887653 57899999999999753 32 3455677778889999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       167 ~~i~~  171 (183)
T 2fu5_C          167 RDIKA  171 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98754

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.97  E-value=1.1e-30  Score=186.48  Aligned_cols=162  Identities=30%  Similarity=0.525  Sum_probs=135.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ++.+||+++|++|||||||+++++.+.+...+.++.+... .....+++..+.+.+||+||++.+...+..++..+|+++
T Consensus         2 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i   80 (168)
T 1u8z_A            2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence            4679999999999999999999998888777777776544 345567777889999999999998888899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|+|+++..++..+..|+..+.....  +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++|++
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (168)
T 1u8z_A           81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence            99999999999999999888877653  8999999999998653 22 34555677778899999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+.+
T Consensus       161 l~~~i~~  167 (168)
T 1u8z_A          161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            9998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.97  E-value=1.7e-30  Score=185.57  Aligned_cols=160  Identities=33%  Similarity=0.577  Sum_probs=136.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+||+||++.+...+..+++.+|++++
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~   80 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFAL   80 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEE
Confidence            579999999999999999999999888777777777554 3556677778899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhc-CCeEEEecccCCCChHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~-~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |||++++.++..+..|+..+....  .+.|+++|+||+|+.+.. . ..+...++... +.+++++||++|.|++++|.+
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (167)
T 1c1y_A           81 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYD  160 (167)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHH
Confidence            999999999999999988887653  589999999999986533 2 33445566665 789999999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       161 l~~~i~  166 (167)
T 1c1y_A          161 LVRQIN  166 (167)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998763

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.97  E-value=1.6e-30  Score=188.86  Aligned_cols=165  Identities=27%  Similarity=0.484  Sum_probs=139.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      +++.+||+++|++|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         2 ~~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   80 (186)
T 1mh1_A            2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (186)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence            35679999999999999999999998888777777776444 44566778889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEec
Q 027607           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~s  153 (221)
                      ++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+..             . ..+...++...+. +++++|
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S  160 (186)
T 1mh1_A           81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (186)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEec
Confidence            9999999999999887 6888887776789999999999986431             1 2234456667776 999999


Q ss_pred             ccCCCChHHHHHHHHHHHhCCC
Q 027607          154 AKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      |++|.|++++|.+|.+.+...+
T Consensus       161 a~~g~gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          161 ALTQRGLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCccCHHHHHHHHHHHHhccc
Confidence            9999999999999999887654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.97  E-value=1.1e-30  Score=189.86  Aligned_cols=163  Identities=24%  Similarity=0.414  Sum_probs=137.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~   82 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV   82 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEE
Confidence            35679999999999999999999999888777778887555 34566777789999999999999999999999999999


Q ss_pred             EEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcC-CeEEEec
Q 027607           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||++++.++..+ ..|+..+....++.|+++|+||+|+.+.             .+. .+...++...+ +.++++|
T Consensus        83 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  162 (184)
T 1m7b_A           83 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  162 (184)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECB
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEee
Confidence            999999999999988 6888888777778999999999998642             222 34556666666 7899999


Q ss_pred             cc-CCCChHHHHHHHHHHHhC
Q 027607          154 AK-SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~-~~~gv~~~~~~l~~~l~~  173 (221)
                      |+ +|.|++++|.+|.+.+..
T Consensus       163 a~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          163 ALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             TTTBHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCcCHHHHHHHHHHHHhc
Confidence            98 689999999999998764

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.97  E-value=2.9e-30  Score=190.85  Aligned_cols=165  Identities=34%  Similarity=0.644  Sum_probs=142.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|++
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~   84 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC   84 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence            45779999999999999999999999888888888888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccH-HHHHHHh-hcCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHR-KKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~-~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++|+|++++.++..+..|+..+....     .+.|+++|+||+|+..+.... +...++. ..+++++++||++|.|+++
T Consensus        85 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  164 (207)
T 1vg8_A           85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQ  164 (207)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHH
Confidence            99999999999999999988876654     478999999999997544433 3445555 5678999999999999999


Q ss_pred             HHHHHHHHHhCC
Q 027607          163 PFLYLARKLAGD  174 (221)
Q Consensus       163 ~~~~l~~~l~~~  174 (221)
                      +|.+|++.+...
T Consensus       165 l~~~l~~~~~~~  176 (207)
T 1vg8_A          165 AFQTIARNALKQ  176 (207)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-30  Score=191.08  Aligned_cols=163  Identities=26%  Similarity=0.540  Sum_probs=143.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||||.+.+...+..+++.+|++++
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~   86 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFIL   86 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEE
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEE
Confidence            56999999999999999999999988877788888888888888888888999999999999999899999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|++++.++..+..|+..+.... .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|.+|.
T Consensus        87 v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  166 (203)
T 1zbd_A           87 MYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV  166 (203)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHH
Confidence            999999999999999998887664 58999999999999653 22 3345567777889999999999999999999999


Q ss_pred             HHHhCC
Q 027607          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+...
T Consensus       167 ~~i~~~  172 (203)
T 1zbd_A          167 DVICEK  172 (203)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.97  E-value=8.4e-31  Score=191.21  Aligned_cols=165  Identities=30%  Similarity=0.554  Sum_probs=139.0

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-cccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHG   86 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-~~~~~~~~~~   86 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+. .++..+++.+
T Consensus        15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~   94 (189)
T 1z06_A           15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV   94 (189)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred             CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence            345577999999999999999999999998888788888888888888888888999999999998887 7888899999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCC---CC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSN---YN  159 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~---~g  159 (221)
                      |++++|+|+++..++..+..|+..+....  .+.|+++|+||+|+.+. .. ..+...++...++.++++|+++|   .|
T Consensus        95 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~  174 (189)
T 1z06_A           95 HAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH  174 (189)
T ss_dssp             CEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred             CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence            99999999999999999999998887763  58999999999998653 22 34455677788899999999999   99


Q ss_pred             hHHHHHHHHHHHh
Q 027607          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 v~~~~~~l~~~l~  172 (221)
                      +.++|.+|++.+.
T Consensus       175 i~~l~~~l~~~i~  187 (189)
T 1z06_A          175 VEAIFMTLAHKLK  187 (189)
T ss_dssp             HHHHHHHHC----
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.97  E-value=1.5e-30  Score=188.23  Aligned_cols=165  Identities=30%  Similarity=0.518  Sum_probs=141.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +..+.++|+|+|++|||||||+++|+.+.+...+.++.+..+. ....+++..+.+.+|||||++.+...+..++..+|+
T Consensus         5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~   83 (181)
T 2fn4_A            5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   83 (181)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence            3457899999999999999999999999888877888876655 556677777899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      +++|||+++..++..+..|+..+....  .+.|+++|+||+|+... .. ..+...++...++.++++|+++|.|++++|
T Consensus        84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~  163 (181)
T 2fn4_A           84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  163 (181)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence            999999999999999999988875432  57899999999998653 23 344556777788999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027607          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      ++|.+.+.+.
T Consensus       164 ~~l~~~~~~~  173 (181)
T 2fn4_A          164 EQLVRAVRKY  173 (181)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988654

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.97  E-value=2.3e-30  Score=188.21  Aligned_cols=164  Identities=32%  Similarity=0.571  Sum_probs=143.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   87 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGAL   87 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEE
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEE
Confidence            45799999999999999999999998888777888888888888888888889999999999999988899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus        88 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  167 (186)
T 2bme_A           88 LVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQC  167 (186)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHH
Confidence            9999999999999999988876653 58899999999998642 23 245567778889999999999999999999999


Q ss_pred             HHHHhCC
Q 027607          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       168 ~~~~~~~  174 (186)
T 2bme_A          168 ARKILNK  174 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.97  E-value=3.5e-30  Score=190.40  Aligned_cols=165  Identities=29%  Similarity=0.527  Sum_probs=145.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ...+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi   85 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII   85 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence            35699999999999999999999999888888888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...+++++++||++|.|++++|.+|
T Consensus        86 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  165 (206)
T 2bcg_Y           86 IVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTM  165 (206)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887664 57899999999999753 23 234556777788999999999999999999999


Q ss_pred             HHHHhCCC
Q 027607          168 ARKLAGDP  175 (221)
Q Consensus       168 ~~~l~~~~  175 (221)
                      .+.+....
T Consensus       166 ~~~i~~~~  173 (206)
T 2bcg_Y          166 ARQIKESM  173 (206)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            99886643

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.97  E-value=1.5e-30  Score=193.24  Aligned_cols=165  Identities=27%  Similarity=0.457  Sum_probs=138.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..+++++|+++
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i   85 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV   85 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence            4779999999999999999999999888777777877544 445667777899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc----------ccHHHHHHHhhcCC-eEEEecccCCC
Q 027607           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ----------VKAKQVTFHRKKNL-QYYEISAKSNY  158 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~~  158 (221)
                      +|||++++.++..+. .|+..+....++.|+++|+||+|+.+..          ...+...++...+. .++++||++|.
T Consensus        86 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~  165 (212)
T 2j0v_A           86 LAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQ  165 (212)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCT
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCC
Confidence            999999999999886 7988888777789999999999986532          23445566777775 89999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027607          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~  176 (221)
                      |++++|.+|++.+.....
T Consensus       166 gi~~l~~~l~~~~~~~~~  183 (212)
T 2j0v_A          166 NVKAVFDTAIKVVLQPPR  183 (212)
T ss_dssp             THHHHHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHhhhhh
Confidence            999999999999877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.97  E-value=2.9e-30  Score=190.25  Aligned_cols=165  Identities=28%  Similarity=0.451  Sum_probs=137.9

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      .++...+||+|+|.+|||||||+++++.+.+...+.++.+.++. ....+++..+.+.+|||||++.+...+..+++.+|
T Consensus        20 ~m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d   98 (201)
T 2gco_A           20 HMAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (201)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCS
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCC
Confidence            45567899999999999999999999998887777777776554 34567777889999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEE
Q 027607           88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE  151 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~  151 (221)
                      ++++|||++++.++..+ ..|...+.....+.|+++|+||+|+....             . ..+...++...+. .+++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (201)
T 2gco_A           99 VILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE  178 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEE
Confidence            99999999999999988 57888887776789999999999986531             1 2344566666676 8999


Q ss_pred             ecccCCCChHHHHHHHHHHHhC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|.+|.+.+.+
T Consensus       179 ~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          179 CSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHC
T ss_pred             eeCCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999997653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=191.24  Aligned_cols=166  Identities=23%  Similarity=0.303  Sum_probs=133.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-cccccccccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQ   87 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-~~~~~~~~~d   87 (221)
                      ...+.+||+|+|++|||||||+++|+.........++.+.+.....+.+++..+.+.+|||+|++.+.. ++..+++.+|
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d   98 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGD   98 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCC
Confidence            445679999999999999999999764433323344555555666677788889999999999987654 6677889999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ++++|||++++.+|..+..|+..+....  .+.|+++|+||+|+.+. ... .+...++...++.++++||++|.|++++
T Consensus        99 ~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~l  178 (195)
T 3cbq_A           99 AFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL  178 (195)
T ss_dssp             EEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHH
Confidence            9999999999999999999998887654  48999999999999653 333 3455677778899999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027607          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |.+|++.+...
T Consensus       179 f~~l~~~i~~~  189 (195)
T 3cbq_A          179 FEGAVRQIRLR  189 (195)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.1e-30  Score=194.02  Aligned_cols=169  Identities=30%  Similarity=0.513  Sum_probs=137.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..+++.+|+++
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi   90 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL   90 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence            45699999999999999999999998887777788888888778888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus        91 lV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  170 (223)
T 3cpj_B           91 IVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL  170 (223)
T ss_dssp             EEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998887653 47899999999998653 23 244556777888999999999999999999999


Q ss_pred             HHHHhCCCCCcc
Q 027607          168 ARKLAGDPNLHF  179 (221)
Q Consensus       168 ~~~l~~~~~~~~  179 (221)
                      ++.+........
T Consensus       171 ~~~i~~~~~~~~  182 (223)
T 3cpj_B          171 INTIYQKVSKHQ  182 (223)
T ss_dssp             HHHHTTCC----
T ss_pred             HHHHHHHhhhcc
Confidence            999987655443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.97  E-value=2e-30  Score=185.63  Aligned_cols=161  Identities=24%  Similarity=0.308  Sum_probs=124.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-ccccccccccEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-~~~~~~~~~d~~i~   91 (221)
                      .+||+++|++|||||||+++|+.+........+.+.+.......+++..+.+.+||++|++.+.. ++..+++.+|++++
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~   81 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI   81 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence            48999999999999999999887666555555666667777777888889999999999988776 66777899999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCC-ccc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~-~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||++++.++..+..|+..+.....  +.|+++|+||+|+.+ +.. ..+...++...+++++++||++|.|++++|++|
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l  161 (169)
T 3q85_A           82 VFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA  161 (169)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHH
Confidence            9999999999999999998877654  899999999999864 233 344557888889999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       162 ~~~i~~  167 (169)
T 3q85_A          162 VRQIRL  167 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.97  E-value=1.7e-30  Score=187.60  Aligned_cols=162  Identities=29%  Similarity=0.566  Sum_probs=141.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+|||||++.+...+..++..+|+++
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i   91 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAV   91 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence            46799999999999999999999988888878888888888888888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|++++.++..+..|+..+.... .+.|+++|+||+|+.+.. . ..+...++...+++++++|+++|.|++++|.+|
T Consensus        92 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l  171 (179)
T 2y8e_A           92 VVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRV  171 (179)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988887654 589999999999986432 2 344556777788999999999999999999999


Q ss_pred             HHHHh
Q 027607          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      .+.+.
T Consensus       172 ~~~~~  176 (179)
T 2y8e_A          172 AAALP  176 (179)
T ss_dssp             HHTCC
T ss_pred             HHHHh
Confidence            88653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.97  E-value=3.3e-30  Score=189.79  Aligned_cols=165  Identities=25%  Similarity=0.380  Sum_probs=130.4

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+|||||++.+..++..++.++|
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD   93 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence            3456789999999999999999999998887777777776444 445667777889999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEE
Q 027607           88 CAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYE  151 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~  151 (221)
                      ++++|||++++.++..+. .|+..+.....+.|+++|+||+|+...             .. ..+...++...+. .+++
T Consensus        94 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  173 (201)
T 2q3h_A           94 IFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIE  173 (201)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEE
Confidence            999999999999999986 798888877779999999999998642             22 2344566666676 8999


Q ss_pred             ecccCCCChHHHHHHHHHHHhC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|.+|.+.+..
T Consensus       174 ~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          174 CSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EecCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999998754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.3e-32  Score=197.19  Aligned_cols=165  Identities=25%  Similarity=0.513  Sum_probs=145.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++......+.+..+.+.+|||||++.+..++..+++.+|++
T Consensus        20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   99 (191)
T 3dz8_A           20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF   99 (191)
T ss_dssp             EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred             cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence            44679999999999999999999998888777778888888888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+..  ...+...++...++.++++|+++|.|++++|.+
T Consensus       100 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  179 (191)
T 3dz8_A          100 ILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFER  179 (191)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999887765 589999999999986532  234455777888999999999999999999999


Q ss_pred             HHHHHhCC
Q 027607          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |.+.+.+.
T Consensus       180 l~~~i~~~  187 (191)
T 3dz8_A          180 LVDAICDK  187 (191)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99987653

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=190.76  Aligned_cols=164  Identities=28%  Similarity=0.575  Sum_probs=135.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||+|++.+...+..+++.+|++
T Consensus        23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~i  102 (192)
T 2il1_A           23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGI  102 (192)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence            45679999999999999999999998888777788888888888888888889999999999999988889999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhh-cCCeEEEecccCCCChHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRK-KNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~-~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      ++|||+++..+++.+..|+..+.... .+.|+++|+||+|+.+. ... .+...++.. .++.++++||++|.|++++|.
T Consensus       103 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~  182 (192)
T 2il1_A          103 ILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFL  182 (192)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHH
Confidence            99999999999999999988887664 47999999999998653 332 344455655 378999999999999999999


Q ss_pred             HHHHHHhC
Q 027607          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      +|.+.+.+
T Consensus       183 ~l~~~i~~  190 (192)
T 2il1_A          183 KLVDDILK  190 (192)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.97  E-value=1.6e-30  Score=191.53  Aligned_cols=164  Identities=31%  Similarity=0.574  Sum_probs=133.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i  102 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGAL  102 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEE
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEE
Confidence            45699999999999999999999988887777788887787778888888899999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||++++.++..+..|+..+.... .+.|+++|+||+|+... .. ..+...++...++.++++||++|.|++++|.+|
T Consensus       103 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l  182 (200)
T 2o52_A          103 LVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKC  182 (200)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999998886654 58999999999998643 22 245567778889999999999999999999999


Q ss_pred             HHHHhCC
Q 027607          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      ++.+...
T Consensus       183 ~~~i~~~  189 (200)
T 2o52_A          183 ARTILNK  189 (200)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988653

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.97  E-value=1.5e-30  Score=192.36  Aligned_cols=163  Identities=24%  Similarity=0.414  Sum_probs=137.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++
T Consensus        25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~  103 (205)
T 1gwn_A           25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV  103 (205)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred             cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence            45679999999999999999999999988777778887655 44566677789999999999999999999999999999


Q ss_pred             EEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCc-------------ccc-HHHHHHHhhcC-CeEEEec
Q 027607           90 IIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNR-------------QVK-AKQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~~-~~~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||+++..++..+ ..|+..+.....+.|+++|+||+|+.+.             .+. .+...++...+ +.++++|
T Consensus       104 ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S  183 (205)
T 1gwn_A          104 LICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECS  183 (205)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEee
Confidence            999999999999988 6888888777778999999999998642             222 33456666666 7899999


Q ss_pred             cc-CCCChHHHHHHHHHHHhC
Q 027607          154 AK-SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       154 ~~-~~~gv~~~~~~l~~~l~~  173 (221)
                      |+ +|.|++++|..|.+.++.
T Consensus       184 Ak~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          184 ALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             TTTCHHHHHHHHHHHHHHHHH
T ss_pred             eccCCcCHHHHHHHHHHHHhh
Confidence            99 689999999999987753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.97  E-value=2.2e-30  Score=192.65  Aligned_cols=166  Identities=28%  Similarity=0.497  Sum_probs=119.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.. ......+++..+.+.+|||||++.+...+..++..+|+
T Consensus        30 ~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~  108 (214)
T 2j1l_A           30 PGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER-YMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASV  108 (214)
T ss_dssp             --CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEE-EEEEEEETTEEEEEEEEEC---------------CEEE
T ss_pred             CCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccee-EEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCE
Confidence            34578999999999999999999999888777667777543 34556777788899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEe
Q 027607           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~  152 (221)
                      +++|||++++.++..+. .|+..+.....+.|+++|+||+|+....             + ..+...++...++ .++++
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  188 (214)
T 2j1l_A          109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC  188 (214)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence            99999999999999886 7888887777789999999999986532             1 2334566677776 89999


Q ss_pred             cccCCCChHHHHHHHHHHHhCCC
Q 027607          153 SAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      ||++|.|++++|.+|.+.+...+
T Consensus       189 SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          189 SARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             cCCCCCCHHHHHHHHHHHHHHhh
Confidence            99999999999999999887554

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=191.86  Aligned_cols=167  Identities=23%  Similarity=0.316  Sum_probs=137.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+..+ .....+.+..+.+.+|||||++.+...+..+++.+|+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   98 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHG   98 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCE
Confidence            345789999999999999999999999988887788887665 5555666677899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      +++|||+++..++..+..|+..+....  .+.|+++|+||+|+.... . ..+...++...+++++++||++|.|++++|
T Consensus        99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~  178 (201)
T 3oes_A           99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIF  178 (201)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHH
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence            999999999999999999998887653  478999999999986432 2 345567788889999999999999999999


Q ss_pred             HHHHHHHhCCCC
Q 027607          165 LYLARKLAGDPN  176 (221)
Q Consensus       165 ~~l~~~l~~~~~  176 (221)
                      .+|.+.+.....
T Consensus       179 ~~l~~~i~~~~~  190 (201)
T 3oes_A          179 TKVIQEIARVEN  190 (201)
T ss_dssp             HHHHHHHHHC--
T ss_pred             HHHHHHHHhhhh
Confidence            999998876543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.8e-30  Score=189.43  Aligned_cols=166  Identities=28%  Similarity=0.437  Sum_probs=134.1

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      .++..++||+|+|++|||||||+++|+.+.+...+.++.+..+.. ...+++..+.+.+|||||++.+...+..++..+|
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (207)
T 2fv8_A           20 FQSMIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTD   98 (207)
T ss_dssp             GGGSEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCC
T ss_pred             cccccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCC
Confidence            556778999999999999999999999888877777777655543 3566777889999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccH-HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEE
Q 027607           88 CAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYE  151 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~  151 (221)
                      ++++|||++++.++..+ ..|+..+....++.|+++|+||+|+....             . ..+...++...+. .+++
T Consensus        99 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  178 (207)
T 2fv8_A           99 VILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLE  178 (207)
T ss_dssp             EEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999999999888 67888887776789999999999986531             1 2234456666666 8999


Q ss_pred             ecccCCCChHHHHHHHHHHHhCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      +||++|.|++++|.+|.+.+...
T Consensus       179 ~SA~~g~gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          179 CSAKTKEGVREVFETATRAALQK  201 (207)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHSC
T ss_pred             eeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999988654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.97  E-value=2.8e-30  Score=186.90  Aligned_cols=164  Identities=27%  Similarity=0.551  Sum_probs=126.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ..+.++|+|+|++|||||||+++++.+.+...+.++.+.+.....+.++ +....+.+||+||++.+...+..+++.+|+
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   84 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC   84 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence            3467999999999999999999999988877778888877777777666 456899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCc--cc-cHHHHHHHh-hcCCeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNR--QV-KAKQVTFHR-KKNLQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~--~~-~~~~~~~~~-~~~~~~~~~s~~~~~g  159 (221)
                      +++|+|+++..++..+..|+..+....     .+.|+++|+||+|+...  .. ..+...++. ..+.+++++|+++|.|
T Consensus        85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g  164 (182)
T 1ky3_A           85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN  164 (182)
T ss_dssp             EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence            999999999999999999998886653     57899999999998532  22 233445555 4678899999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027607          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 v~~~~~~l~~~l~~  173 (221)
                      ++++|.+|.+.+.+
T Consensus       165 i~~l~~~l~~~~~~  178 (182)
T 1ky3_A          165 VDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999997754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.97  E-value=5.2e-30  Score=187.36  Aligned_cols=164  Identities=29%  Similarity=0.524  Sum_probs=140.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee-eeEEEecCc---------EEEEEEEecCCcccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCG---------KIRFYCWDTAGQEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~i~~~D~~g~~~~~~~~   79 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+.++. .....+.+.         .+.+.+|||||++.+...+
T Consensus         8 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~   87 (195)
T 3bc1_A            8 YDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT   87 (195)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred             cceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence            345699999999999999999999988887777888887776 555566655         7899999999999998888


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEeccc
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAK  155 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~  155 (221)
                      ..+++.+|++++|+|++++.++..+..|+..+....  .+.|+++|+||+|+... .. ..+...++...+++++++|++
T Consensus        88 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  167 (195)
T 3bc1_A           88 TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAA  167 (195)
T ss_dssp             HHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred             HHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECC
Confidence            999999999999999999999999999998887765  58999999999998653 22 344556777788999999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027607          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~  173 (221)
                      +|.|++++|.+|.+.+.+
T Consensus       168 ~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          168 NGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             TCTTHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHH
Confidence            999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=185.14  Aligned_cols=162  Identities=20%  Similarity=0.296  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc--cccccccccccccE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK--FGGLRDGYYIHGQC   88 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~--~~~~~~~~~~~~d~   88 (221)
                      .+.+||+|+|++|||||||+++|+.+.+... .++.+.+.....+.+++..+.+.+|||+|++.  +..+...+++.+|+
T Consensus         2 ~~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~   80 (175)
T 2nzj_A            2 MALYRVVLLGDPGVGKTSLASLFAGKQERDL-HEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA   80 (175)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred             ceEEEEEEECCCCccHHHHHHHHhcCCCccc-cCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence            4679999999999999999999887766443 45677777777788888888999999999877  45666778899999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      +++|||++++.++..+..|+..+...  ..+.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~  160 (175)
T 2nzj_A           81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF  160 (175)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence            99999999999999999998887664  247999999999999653 332 34456677788999999999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      .+|.+.+..
T Consensus       161 ~~l~~~~~~  169 (175)
T 2nzj_A          161 EGVVRQLRL  169 (175)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.97  E-value=4.3e-30  Score=189.70  Aligned_cols=166  Identities=29%  Similarity=0.508  Sum_probs=140.8

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .....+.++|+|+|++|||||||+++|+.+.+...+.++.+..+ ...+.+++..+.+.+|||||++.+...+..++..+
T Consensus         8 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   86 (206)
T 2bov_A            8 GQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSG   86 (206)
T ss_dssp             ---CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHC
T ss_pred             CCCCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhC
Confidence            34566789999999999999999999998888777777777554 45566777788999999999999988889999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      |++++|||+++..++..+..|+..+.....  +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|+++
T Consensus        87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  166 (206)
T 2bov_A           87 EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK  166 (206)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999988877653  8999999999998653 22 3455567777889999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|.+.+..
T Consensus       167 l~~~l~~~i~~  177 (206)
T 2bov_A          167 VFFDLMREIRA  177 (206)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998865

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.97  E-value=4.1e-30  Score=186.79  Aligned_cols=165  Identities=29%  Similarity=0.514  Sum_probs=138.7

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ..+.+.+||+|+|++|||||||+++|+.+.+...+.++.+... .....+.+..+.+.+|||||++.+...+..++..+|
T Consensus        13 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d   91 (187)
T 2a9k_A           13 QNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGE   91 (187)
T ss_dssp             ----CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCC
Confidence            4456789999999999999999999998888777777776544 345567777789999999999998888899999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ++++|||+++..++..+..|+..+.....  +.|+++|+||+|+.+. .. ..+...++...+++++++|+++|.|++++
T Consensus        92 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  171 (187)
T 2a9k_A           92 GFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKV  171 (187)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred             EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHH
Confidence            99999999999999999999888877654  8999999999998653 22 34556777788899999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |.+|.+.+..
T Consensus       172 ~~~l~~~i~~  181 (187)
T 2a9k_A          172 FFDLMREIRA  181 (187)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.97  E-value=8.5e-30  Score=187.73  Aligned_cols=162  Identities=31%  Similarity=0.496  Sum_probs=138.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcE-----------------------------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-----------------------------   61 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------   61 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..                             
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            357999999999999999999999998887888888877777777666544                             


Q ss_pred             --------EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           62 --------IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 --------~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                              ..+.+|||||++.+...+..+++.+|++++|+|++++.++..+..|+..+.... ..|+++|+||+|...+.
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~piilv~NK~D~~~~~  163 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS-NYIIILVANKIDKNKFQ  163 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CCEEEEEEECTTCC-CC
T ss_pred             cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC-CCcEEEEEECCCccccc
Confidence                    889999999999999999999999999999999999999999999988887664 49999999999944333


Q ss_pred             cc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          134 VK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       134 ~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .. .+...++...+++++++||++|.|++++|.+|.+.+.+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          164 VDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             SCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            33 45667788889999999999999999999999987754

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.97  E-value=1.7e-31  Score=195.81  Aligned_cols=164  Identities=20%  Similarity=0.177  Sum_probs=134.7

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc-----------cCCcceeeeeeEE-EecCcEEEEEEEecCCcccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY-----------EPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~-----------~~~~~~~~~~~~~-~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      ..+.+||+|+|++|||||||++. +.+.+...+           .++.+.++..... .+++..+.+.+|||||++.+..
T Consensus        11 ~~~~~ki~vvG~~~~GKssL~~~-l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~   89 (198)
T 3t1o_A           11 REINFKIVYYGPGLSGKTTNLKW-IYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNA   89 (198)
T ss_dssp             TEEEEEEEEECSTTSSHHHHHHH-HHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSH
T ss_pred             cccccEEEEECCCCCCHHHHHHH-HHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHH
Confidence            35679999999999999999975 666665543           2355555555444 5667788999999999999999


Q ss_pred             ccccccccccEEEEEEECC------ChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEE
Q 027607           78 LRDGYYIHGQCAIIMFDVT------ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYY  150 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~  150 (221)
                      .+..+++++|++++|||++      +..++..+..|+..+.....+.|+++|+||+|+.+.....+...++...++ .++
T Consensus        90 ~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~  169 (198)
T 3t1o_A           90 SRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVL  169 (198)
T ss_dssp             HHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEE
T ss_pred             HHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEE
Confidence            9999999999999999999      556777777777776544568999999999999877666677788888888 999


Q ss_pred             EecccCCCChHHHHHHHHHHHhCC
Q 027607          151 EISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      ++||++|.|++++|.+|.+.+.+.
T Consensus       170 ~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          170 EAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             ECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             EEecCCCcCHHHHHHHHHHHHHHH
Confidence            999999999999999999987653

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.97  E-value=8.2e-30  Score=185.60  Aligned_cols=163  Identities=27%  Similarity=0.517  Sum_probs=137.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+++||+|+|++|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+..++..++..+|+++
T Consensus         2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i   80 (189)
T 4dsu_A            2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   80 (189)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCC-EEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEE
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCch-heEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence            3679999999999999999999998888777777765 444556677888889999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||+++..++..+..|+..+....  .+.|+++|+||+|+..+.... ....++...+++++++||++|.|++++|.+|
T Consensus        81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l  160 (189)
T 4dsu_A           81 CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL  160 (189)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999988887653  479999999999997655443 4556777888999999999999999999999


Q ss_pred             HHHHhCC
Q 027607          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      .+.+...
T Consensus       161 ~~~~~~~  167 (189)
T 4dsu_A          161 VREIRKH  167 (189)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9987543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.97  E-value=1e-29  Score=188.72  Aligned_cols=164  Identities=27%  Similarity=0.529  Sum_probs=141.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+...+..++..+|++
T Consensus        17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i   96 (213)
T 3cph_A           17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGI   96 (213)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence            34579999999999999999999998888777788888888877888888788999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      ++|||+++..++..+..|+..+.... .+.|+++|+||+|+..+... .+...++...+++++++|+++|.|++++|.+|
T Consensus        97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  176 (213)
T 3cph_A           97 ILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL  176 (213)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence            99999999999999999998887664 37899999999999654443 34456677778999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       177 ~~~~~~  182 (213)
T 3cph_A          177 AKLIQE  182 (213)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998755

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.97  E-value=6.7e-30  Score=184.54  Aligned_cols=156  Identities=21%  Similarity=0.377  Sum_probs=128.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+++|++|||||||+++|+.+.+.. +.++.+.. +...+.+++..+.+.+|||+|++.     ..+++++|+++
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~i   77 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVI   77 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSE-EEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCccee-EEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEE
Confidence            578999999999999999999999888865 67777744 355667787888999999999876     46788999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcC---Ccccc-HHHHHHHhhc-CCeEEEecccCCCChH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVK---NRQVK-AKQVTFHRKK-NLQYYEISAKSNYNFE  161 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~---~~~~~-~~~~~~~~~~-~~~~~~~s~~~~~gv~  161 (221)
                      +|||++++.++..+..|+..+....    .+.|+++|+||+|+.   .+... .+...++... +++++++||++|.|++
T Consensus        78 lv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  157 (178)
T 2iwr_A           78 FVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVD  157 (178)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHH
Confidence            9999999999999999876665442    478999999999983   23333 3444565554 6899999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|++.+..
T Consensus       158 ~lf~~l~~~~~~  169 (178)
T 2iwr_A          158 RVFQEVAQKVVT  169 (178)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998754

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.97  E-value=8.1e-31  Score=189.90  Aligned_cols=163  Identities=28%  Similarity=0.447  Sum_probs=122.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++++.+.+...+.++.+..+. ....+++..+.+.+|||||++.+...+..+++++|++
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~   83 (182)
T 3bwd_D            5 ASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVF   83 (182)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence            356799999999999999999999988877766666664433 2334455667888999999999999999999999999


Q ss_pred             EEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc------------ccHHHHHHHhhcCC-eEEEeccc
Q 027607           90 IIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ------------VKAKQVTFHRKKNL-QYYEISAK  155 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~-~~~~~s~~  155 (221)
                      ++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+..            ...+...++...+. +++++||+
T Consensus        84 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~  163 (182)
T 3bwd_D           84 ILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSK  163 (182)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECC
Confidence            9999999999999887 6888887776789999999999986532            22344566777775 89999999


Q ss_pred             CCCChHHHHHHHHHHHhC
Q 027607          156 SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~  173 (221)
                      +|.|++++|++|.+.+..
T Consensus       164 ~~~gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          164 SQENVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             TCTTHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHhc
Confidence            999999999999997653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.97  E-value=7.9e-30  Score=182.01  Aligned_cols=160  Identities=19%  Similarity=0.256  Sum_probs=113.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.... ....++.+.++ .....+++..+.+.+||++|++.+..++..+++.+|++++
T Consensus         1 ~~~ki~~vG~~~~GKSsli~~l~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~   78 (166)
T 3q72_A            1 SVYKVLLLGAPGVGKSALARIFGGVED-GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI   78 (166)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHcCccc-cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence            358999999999999999999765443 34556666655 4556778888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||++++.++..+..|+..+...  ..+.|+++|+||+|+.+. .. ..+...++...+++++++||++|.|++++|++|
T Consensus        79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  158 (166)
T 3q72_A           79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV  158 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence            99999999999999998888764  258999999999998653 23 334557777888999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      .+.+..
T Consensus       159 ~~~~~~  164 (166)
T 3q72_A          159 VRQIRL  164 (166)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            997653

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.97  E-value=1.5e-29  Score=184.64  Aligned_cols=167  Identities=26%  Similarity=0.487  Sum_probs=128.6

Q ss_pred             CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .+...++.+||+++|.+|||||||+++|+.+.+...+.++.+... .....+.+..+.+.+||+||++.+...+..++..
T Consensus        14 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~   92 (190)
T 3con_A           14 LYFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRT   92 (190)
T ss_dssp             -----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTT
T ss_pred             ccccccceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCc
Confidence            344567889999999999999999999998887776666665433 4456667778899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +|++++|||+++..++..+..|+..+....  .+.|+++|+||+|+..+... .+...++...+++++++|+++|.|+++
T Consensus        93 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~  172 (190)
T 3con_A           93 GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVED  172 (190)
T ss_dssp             CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred             CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence            999999999999999999999988887654  37999999999998764433 445577777889999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|.+.+.+
T Consensus       173 l~~~l~~~~~~  183 (190)
T 3con_A          173 AFYTLVREIRQ  183 (190)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.97  E-value=3.1e-30  Score=183.96  Aligned_cols=160  Identities=28%  Similarity=0.517  Sum_probs=136.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.. ......+++....+.+|||||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~   80 (167)
T 1kao_A            2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDF-YRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIL   80 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCccee-EEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEE
Confidence            56999999999999999999999888877777777643 35666778888899999999999988888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |+|++++.++..+..|+..+....  .+.|+++|+||+|+... .. ..+...++...+++++++|+++|.|++++|++|
T Consensus        81 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  160 (167)
T 1kao_A           81 VYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEI  160 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHH
Confidence            999999999999999988876653  48999999999998643 22 334556777778999999999999999999999


Q ss_pred             HHHHh
Q 027607          168 ARKLA  172 (221)
Q Consensus       168 ~~~l~  172 (221)
                      .+.+.
T Consensus       161 ~~~~~  165 (167)
T 1kao_A          161 VRQMN  165 (167)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.97  E-value=6.4e-30  Score=187.77  Aligned_cols=164  Identities=19%  Similarity=0.334  Sum_probs=130.0

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH   85 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~   85 (221)
                      .....+.+||+|+|.+|||||||+++|+.+.+.. .+.++.+......    ....+.+.+|||||++.+..++..+++.
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~----~~~~~~~~i~Dt~G~~~~~~~~~~~~~~   86 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETF----EKGRVAFTVFDMGGAKKFRGLWETYYDN   86 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEE----EETTEEEEEEEECCSGGGGGGGGGGCTT
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHhc
Confidence            3567788999999999999999999999888877 6788888555433    3456899999999999999999999999


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhc---------CCCCEEEEEeCCCcCCccccHHHHH------HHhhcCCeEE
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVC---------ENIPIVLCGNKVDVKNRQVKAKQVT------FHRKKNLQYY  150 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---------~~~p~ivv~nK~D~~~~~~~~~~~~------~~~~~~~~~~  150 (221)
                      +|++++|||+++..+|..+..|+..+....         .+.|+++|+||+|+.......+...      .+...++.++
T Consensus        87 ~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (199)
T 4bas_A           87 IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIF  166 (199)
T ss_dssp             CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEE
T ss_pred             CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEE
Confidence            999999999999999999988888775542         2889999999999976533222211      1144678899


Q ss_pred             EecccCCCChHHHHHHHHHHHhCC
Q 027607          151 EISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      ++||++|.|++++|++|.+.+...
T Consensus       167 ~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          167 ASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             EeeCCCccCHHHHHHHHHHHHHHH
Confidence            999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.97  E-value=1.5e-29  Score=180.13  Aligned_cols=161  Identities=28%  Similarity=0.514  Sum_probs=136.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.. ......+.+..+.+.+||+||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   80 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC   80 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence            46899999999999999999999888777666666543 34556677778899999999999888888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcC--CCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|+++..++..+..|+..+.....  +.|+++|+||+|+..+... .+...++...+++++++|+++|.|+++++.+|.
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~  160 (166)
T 2ce2_X           81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV  160 (166)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence            9999999999999999888876643  7999999999998764433 445567777889999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       161 ~~~~~  165 (166)
T 2ce2_X          161 REIRQ  165 (166)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            98754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.97  E-value=8.3e-31  Score=193.74  Aligned_cols=163  Identities=24%  Similarity=0.388  Sum_probs=105.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEecCc--EEEEEEEecCCccccccccccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCG--KIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      .+.++|+|+|++|||||||+++|+.+  .+...+.++.+.+.....+.+.+.  .+.+.+|||||++.+...+..+++.+
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~   97 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV   97 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence            56799999999999999999998887  676677778877777777777776  88999999999999999999999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcC----CCCEEEEEeCCCcCC--ccc-cHHHHHHHhhcCCeEEEecccC-CC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCE----NIPIVLCGNKVDVKN--RQV-KAKQVTFHRKKNLQYYEISAKS-NY  158 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~p~ivv~nK~D~~~--~~~-~~~~~~~~~~~~~~~~~~s~~~-~~  158 (221)
                      |++++|||++++.++..+..|+..+.....    +.|+++|+||+|+..  +.. ..+...++...++.++++|+++ |.
T Consensus        98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~  177 (208)
T 2yc2_C           98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK  177 (208)
T ss_dssp             CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred             cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence            999999999999999999999998877653    889999999999975  333 3456677888889999999999 99


Q ss_pred             ChHHHHHHHHHHHhC
Q 027607          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 gv~~~~~~l~~~l~~  173 (221)
                      |++++|.+|.+.+..
T Consensus       178 gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          178 DADAPFLSIATTFYR  192 (208)
T ss_dssp             --CHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999997643

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5.9e-30  Score=187.78  Aligned_cols=163  Identities=28%  Similarity=0.405  Sum_probs=137.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++.+..+ .....+++..+.+.+||+||++. ...+..+++.+|++
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~i  102 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGF  102 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEE
Confidence            45789999999999999999999999988777777877544 45567777889999999999887 67778889999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCC-ChHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPF  164 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~-gv~~~~  164 (221)
                      ++|||++++.++..+..|+..+....  .+.|+++|+||+|+.+. .. ..+...++...+++++++||++|. |++++|
T Consensus       103 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~  182 (196)
T 2atv_A          103 VLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF  182 (196)
T ss_dssp             EEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHH
Confidence            99999999999999999988887653  58999999999998653 23 344556777788999999999999 999999


Q ss_pred             HHHHHHHhCC
Q 027607          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      .+|++.+.+.
T Consensus       183 ~~l~~~i~~~  192 (196)
T 2atv_A          183 YELCREVRRR  192 (196)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhh
Confidence            9999987653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.97  E-value=6.5e-30  Score=188.79  Aligned_cols=162  Identities=26%  Similarity=0.472  Sum_probs=133.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+ +.......+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        26 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 4gzl_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDV  104 (204)
T ss_dssp             ----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSE-EEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred             hcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeec-ceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCE
Confidence            456789999999999999999999998888777777775 4445566677788899999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhcCC-eEEEe
Q 027607           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKKNL-QYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~~~-~~~~~  152 (221)
                      +++|||++++.++..+. .|+..+.....+.|+++|+||+|+....             . ..+...++...++ +++++
T Consensus       105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  184 (204)
T 4gzl_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEe
Confidence            99999999999999987 7888888777789999999999986532             1 2334456666665 59999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l  171 (221)
                      ||++|.|++++|.+|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             CTTTCTTHHHHHHHHHHTT
T ss_pred             eCCCCCCHHHHHHHHHHHh
Confidence            9999999999999998854

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.97  E-value=2.2e-29  Score=183.18  Aligned_cols=159  Identities=17%  Similarity=0.266  Sum_probs=129.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||+++++.+. ...+.++.+.+.....  +  +...+.+|||||++.+...+..+++++|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~~--~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   90 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTLE--H--RGFKLNIWDVGGQKSLRSYWRNYFESTDGLI   90 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEEE--E--TTEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence            678999999999999999999988777 6667777775544333  3  3578999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (186)
T 1ksh_A           91 WVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPG  170 (186)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHH
Confidence            999999999999988888777554  3589999999999997643333322221     234678999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027607          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |++|.+.+.++
T Consensus       171 ~~~l~~~i~~~  181 (186)
T 1ksh_A          171 IDWLLDDISSR  181 (186)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhc
Confidence            99999988664

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=7.9e-30  Score=185.72  Aligned_cols=161  Identities=22%  Similarity=0.313  Sum_probs=126.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+.++|+|+|++|||||||+++++.+.+. .+.++.+.+....  .+  ++..+.+|||||++.+...+..++.++|++
T Consensus        13 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i   87 (187)
T 1zj6_A           13 NHQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI--VI--NNTRFLMWDIGGQESLRSSWNTYYTNTEFV   87 (187)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE--EE--TTEEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence            467899999999999999999998887776 5666776544333  33  348899999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...++.++++||++|.|+++
T Consensus        88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~  167 (187)
T 1zj6_A           88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQ  167 (187)
T ss_dssp             EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHH
T ss_pred             EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHH
Confidence            9999999999999999998887664  3689999999999997643333322222     23467899999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027607          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      +|++|++.+...+
T Consensus       168 l~~~l~~~~~~~~  180 (187)
T 1zj6_A          168 GLEWMMSRLKIRL  180 (187)
T ss_dssp             HHHHHHHHHCC--
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999876654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.1e-29  Score=184.99  Aligned_cols=164  Identities=26%  Similarity=0.412  Sum_probs=137.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+|+|++|||||||+++|+.+.+...+.++.+.++. .....++..+.+.+|||||++.+...+..++..+|+++
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i   84 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI   84 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence            46799999999999999999999998887777777775543 34556777889999999999998888888999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||++++.++..+..|+..+....   .+.|+++|+||+|+..+... .+...++...++.++++||++|.|++++|.+
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  164 (199)
T 2gf0_A           85 LVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQE  164 (199)
T ss_dssp             EEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Confidence            9999999999999888887776543   47899999999999765443 3445677778899999999999999999999


Q ss_pred             HHHHHhCCC
Q 027607          167 LARKLAGDP  175 (221)
Q Consensus       167 l~~~l~~~~  175 (221)
                      |.+.+....
T Consensus       165 l~~~~~~~~  173 (199)
T 2gf0_A          165 LLTLETRRN  173 (199)
T ss_dssp             HHHHCSSSC
T ss_pred             HHHHHhhhh
Confidence            999775543

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.97  E-value=2e-29  Score=184.07  Aligned_cols=161  Identities=21%  Similarity=0.345  Sum_probs=125.6

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCc-cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE-FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHG   86 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~   86 (221)
                      ....+.+||+|+|.+|||||||+++|+.+. +...+.++.+....  .+.++  +..+.+|||+|++.+...+..++.++
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~   91 (190)
T 2h57_A           16 PRGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE--KFKSS--SLSFTVFDMSGQGRYRNLWEHYYKEG   91 (190)
T ss_dssp             -----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE--EEECS--SCEEEEEEECCSTTTGGGGGGGGGGC
T ss_pred             cCCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE--EEEEC--CEEEEEEECCCCHHHHHHHHHHHhcC
Confidence            455678999999999999999999988776 45556666664332  33333  47899999999999999999999999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCCccccHHHHHHHh-----hcCCeEEEecccCC
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKNRQVKAKQVTFHR-----KKNLQYYEISAKSN  157 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~  157 (221)
                      |++++|+|+++..++..+..|+..+....    .+.|+++|+||+|+.+.....+......     ..++.++++||++|
T Consensus        92 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  171 (190)
T 2h57_A           92 QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKG  171 (190)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence            99999999999999999888888776543    4799999999999976443333333332     24678999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 027607          158 YNFEKPFLYLARKLA  172 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~  172 (221)
                      .|++++|++|.+.+.
T Consensus       172 ~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          172 EGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             BTHHHHHHHHHHHC-
T ss_pred             cCHHHHHHHHHHHHH
Confidence            999999999998753

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.97  E-value=4.4e-30  Score=191.32  Aligned_cols=163  Identities=33%  Similarity=0.536  Sum_probs=138.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc----------EEEEEEEecCCccccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~i~~~D~~g~~~~~~~~~   80 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+.          .+.+.+|||||++.+...+.
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~  102 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTT  102 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHH
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHH
Confidence            35699999999999999999999988887777777777776666666665          78999999999999988889


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccC
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKS  156 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~  156 (221)
                      .+++.+|++++|||+++..++..+..|+..+....  .+.|+++|+||+|+... .. ..+...++...++.++++||++
T Consensus       103 ~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~  182 (217)
T 2f7s_A          103 AFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAAT  182 (217)
T ss_dssp             HHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTT
T ss_pred             HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCC
Confidence            99999999999999999999999988888776543  57899999999998653 22 3445577778889999999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027607          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~  173 (221)
                      |.|++++|.+|.+.+..
T Consensus       183 g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          183 GQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             TBTHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998765

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=2.5e-29  Score=180.14  Aligned_cols=160  Identities=25%  Similarity=0.426  Sum_probs=133.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++++.+.+...+.++.+.+.. .....++....+.+|||||++.+...+..++..+|++++
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~   80 (172)
T 2erx_A            2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   80 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence            4699999999999999999999988877667777765543 345567777899999999999888888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |+|++++.++..+..|+..+....   .+.|+++|+||+|+... ... .+...++...+++++++|+++|.|++++|++
T Consensus        81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  160 (172)
T 2erx_A           81 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  160 (172)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHH
Confidence            999999999999888887776643   47999999999998653 222 3445667777899999999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |.+.+.
T Consensus       161 l~~~~~  166 (172)
T 2erx_A          161 LLNLEK  166 (172)
T ss_dssp             HHHTCC
T ss_pred             HHHHHh
Confidence            998543

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.97  E-value=9e-30  Score=184.55  Aligned_cols=158  Identities=22%  Similarity=0.312  Sum_probs=124.6

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|.+|||||||+++|+.+.+ ..+.++.+.+.....  +  ++..+.+|||||++.+...+..++.++|
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   90 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEIV--I--NNTRFLMWDIGGQESLRSSWNTYYTNTE   90 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEEE--E--TTEEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEEE--E--CCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            4566789999999999999999999988877 566677775544333  3  3478999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCCh
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv  160 (221)
                      ++++|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...++.++++||++|.|+
T Consensus        91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi  170 (181)
T 2h17_A           91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGL  170 (181)
T ss_dssp             EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence            999999999999999988888877654  3689999999999997643222222221     234568999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|++|.+.
T Consensus       171 ~~l~~~l~~~  180 (181)
T 2h17_A          171 CQGLEWMMSR  180 (181)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999998763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.97  E-value=1.4e-29  Score=184.61  Aligned_cols=161  Identities=22%  Similarity=0.382  Sum_probs=130.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.++...    ....+.+.+|||||++.+...+..+++.+|+
T Consensus        18 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~   93 (188)
T 1zd9_A           18 GSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQPRFRSMWERYCRGVSA   93 (188)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEE----EETTEEEEEEEECCSHHHHTTHHHHHTTCSE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEEE----EeCCEEEEEEECCCCHhHHHHHHHHHccCCE
Confidence            455689999999999999999999998888777778888766542    3356889999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++|+|+++..++..+..|+..+...  ..+.|+++|+||+|+.+.....+....     ....++.++++||++|.|++
T Consensus        94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  173 (188)
T 1zd9_A           94 IVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID  173 (188)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHH
Confidence            99999999999999988888777553  358999999999999764322222211     22345689999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|.+|.+.+..
T Consensus       174 ~l~~~l~~~~~~  185 (188)
T 1zd9_A          174 ITLQWLIQHSKS  185 (188)
T ss_dssp             HHHHHHHHTCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999986543

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.97  E-value=1.7e-29  Score=185.65  Aligned_cols=157  Identities=17%  Similarity=0.233  Sum_probs=119.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.++|+++|++|||||||++++..+.+ ..+.++.+.+..  .+.+++  +.+.+|||||++.++..+..+++.+|+
T Consensus        21 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~   95 (198)
T 1f6b_A           21 LYKKTGKLVFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHPTSE--ELTIAG--MTFTTFDLGGHIQARRVWKNYLPAING   95 (198)
T ss_dssp             CTTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCE--EEEETT--EEEEEEEECC----CCGGGGGGGGCSE
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhcCCC-CccCCCCCceeE--EEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCE
Confidence            346779999999999999999999887765 345667665533  333443  789999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh-----------------hcCCeE
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR-----------------KKNLQY  149 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----------------~~~~~~  149 (221)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+......                 ..++.+
T Consensus        96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (198)
T 1f6b_A           96 IVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEV  175 (198)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEE
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEE
Confidence            99999999999999999998887653  35899999999999976333333333332                 135679


Q ss_pred             EEecccCCCChHHHHHHHHHH
Q 027607          150 YEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      +++||++|.|++++|.+|.+.
T Consensus       176 ~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          176 FMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             EECBTTTTBSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.97  E-value=5e-29  Score=184.57  Aligned_cols=163  Identities=20%  Similarity=0.308  Sum_probs=129.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG   86 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~   86 (221)
                      ..+.+||+|+|++|||||||+++|+....  ...+ ++.+.+.....+.+++..+.+.+|||+|.+. ...+...+++.+
T Consensus        34 ~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~-~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a  112 (211)
T 2g3y_A           34 GNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDC-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG  112 (211)
T ss_dssp             -CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCC
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcC-CccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhC
Confidence            34679999999999999999999875332  3332 3466666667777888888999999999876 455667788999


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +++++|||+++..+|+.+..|+..+...  ..+.|+++|+||+|+.+ +.+. .+...++...+++++++||++|.|+++
T Consensus       113 ~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e  192 (211)
T 2g3y_A          113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE  192 (211)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence            9999999999999999999998877643  35799999999999864 3333 334456677789999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+..
T Consensus       193 lf~~l~~~i~~  203 (211)
T 2g3y_A          193 LFEGIVRQVRL  203 (211)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998743

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.97  E-value=1.7e-31  Score=196.50  Aligned_cols=165  Identities=30%  Similarity=0.548  Sum_probs=134.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+|||||++.+...+..+++.+|+
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~  108 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHG  108 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCE
Confidence            34567999999999999999999988888777777777878888888888888999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +++|||+++..++..+..|+..+.... .+.|+++|+||+|+.+...  ..+...++...+++++++||++|.|++++|.
T Consensus       109 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~  188 (199)
T 3l0i_B          109 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM  188 (199)
T ss_dssp             EEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHH
T ss_pred             EEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence            999999999999999999998886654 4789999999999865332  2345567778889999999999999999999


Q ss_pred             HHHHHHhC
Q 027607          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      +|++.+..
T Consensus       189 ~l~~~l~~  196 (199)
T 3l0i_B          189 TMAAEIKK  196 (199)
T ss_dssp             HHTTTTTT
T ss_pred             HHHHHHHH
Confidence            99886644

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.97  E-value=5e-29  Score=182.05  Aligned_cols=157  Identities=18%  Similarity=0.288  Sum_probs=123.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.++|+++|++|||||||++++..+.+. .+.++.+.+..  .+.++  +..+.+|||||++.++..+..+++.+|+
T Consensus        19 ~~~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~~--~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~   93 (190)
T 1m2o_B           19 LWNKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE--ELAIG--NIKFTTFDLGGHIQARRLWKDYFPEVNG   93 (190)
T ss_dssp             -----CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE--EEEET--TEEEEEEECCCSGGGTTSGGGGCTTCCE
T ss_pred             ccCCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCeE--EEEEC--CEEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence            3467799999999999999999998887764 45667665433  33344  3889999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHh------------hcCCeEEEecc
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHR------------KKNLQYYEISA  154 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------------~~~~~~~~~s~  154 (221)
                      +++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+......            ..+++++++||
T Consensus        94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  173 (190)
T 1m2o_B           94 IVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSV  173 (190)
T ss_dssp             EEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBT
T ss_pred             EEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeEC
Confidence            99999999999999999888887653  35899999999999976333333333322            24568999999


Q ss_pred             cCCCChHHHHHHHHHH
Q 027607          155 KSNYNFEKPFLYLARK  170 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~  170 (221)
                      ++|.|++++|++|.+.
T Consensus       174 ~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          174 VMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             TTTBSHHHHHHHHHTT
T ss_pred             CcCCCHHHHHHHHHhh
Confidence            9999999999998763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.97  E-value=1.6e-28  Score=175.90  Aligned_cols=159  Identities=21%  Similarity=0.318  Sum_probs=127.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+|+|++|||||||+++++.+.+. .+.++.+......  .+  ....+.+|||||++.+...+..+++.+|+++
T Consensus         5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   79 (171)
T 1upt_A            5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNVETV--TY--KNLKFQVWDLGGLTSIRPYWRCYYSNTDAVI   79 (171)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEEEEE--EE--TTEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccceEEE--EE--CCEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence            45799999999999999999998887764 3456666544332  33  3578999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|++++.++.....|+..+....  .+.|+++|+||+|+.+.....+..     ..+...+++++++|+++|.|++++
T Consensus        80 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  159 (171)
T 1upt_A           80 YVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEA  159 (171)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHH
Confidence            9999999999988888887765532  589999999999997643222221     223345678999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027607          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      |.+|.+.+.+.
T Consensus       160 ~~~l~~~i~~~  170 (171)
T 1upt_A          160 MEWLVETLKSR  170 (171)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhhc
Confidence            99999987653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.96  E-value=8e-29  Score=181.26  Aligned_cols=160  Identities=21%  Similarity=0.313  Sum_probs=121.2

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ....+.+||+|+|++|||||||+++++.+.+.. +.++.+....  .+  ......+.+|||||++.+...+..++.++|
T Consensus        24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~~--~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d   98 (192)
T 2b6h_A           24 IFGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE--TV--EYKNICFTVWDVGGQDKIRPLWRHYFQNTQ   98 (192)
T ss_dssp             TTTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEEE--EE--EETTEEEEEEECC-----CTTHHHHHHTCC
T ss_pred             hccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeEE--EE--EECCEEEEEEECCCCHhHHHHHHHHhccCC
Confidence            345688999999999999999999988777653 3455553322  22  224588999999999999999899999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCCh
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv  160 (221)
                      ++++|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+...     .+...+++++++||++|.|+
T Consensus        99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi  178 (192)
T 2b6h_A           99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGL  178 (192)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTH
T ss_pred             EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCH
Confidence            999999999999999988888877553  25899999999999976432222221     12234567999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027607          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      +++|.+|++.+.
T Consensus       179 ~~l~~~l~~~i~  190 (192)
T 2b6h_A          179 YDGLDWLSHELS  190 (192)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999998764

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.96  E-value=3.6e-28  Score=177.80  Aligned_cols=163  Identities=20%  Similarity=0.325  Sum_probs=126.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc-cccccccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-FGGLRDGYYIHG   86 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~-~~~~~~~~~~~~   86 (221)
                      ..+.+||+++|++|||||||+++|+..  .+...+ ++.+.+.....+.+++..+.+.+|||+|.+. ...++..+++.+
T Consensus         3 ~~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~   81 (192)
T 2cjw_A            3 GMTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVG   81 (192)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence            356799999999999999999998753  233332 3355566666777888888999999999766 455667788899


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +++++|||+++..+|..+..|+..+....  .+.|+++|+||+|+.. +... .+...++...+++++++||++|.|+++
T Consensus        82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~  161 (192)
T 2cjw_A           82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE  161 (192)
T ss_dssp             SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred             CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence            99999999999999999998988776542  4789999999999864 2332 334456667788999999999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+..
T Consensus       162 lf~~l~~~~~~  172 (192)
T 2cjw_A          162 LFEGIVRQVRL  172 (192)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998743

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.96  E-value=6.6e-29  Score=180.05  Aligned_cols=158  Identities=17%  Similarity=0.310  Sum_probs=124.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||++++..+.+ ..+.++.|.+...  +.++  .+.+.+|||||++.++..+..++..+|+++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~~~--~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i   88 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIKS--VQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI   88 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEEE--EEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEEEE--EEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence            5789999999999999999999776643 4556677754433  3333  578999999999999888889999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+....     ....++.++++||++|.|++++
T Consensus        89 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l  168 (181)
T 1fzq_A           89 YVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG  168 (181)
T ss_dssp             EEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHH
Confidence            999999999999888888776543  358999999999999764433222221     1234568999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |.+|.+.+.+
T Consensus       169 ~~~l~~~~~~  178 (181)
T 1fzq_A          169 MNWVCKNVNA  178 (181)
T ss_dssp             HHHHHHTC--
T ss_pred             HHHHHHHHHh
Confidence            9999986543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.96  E-value=8.9e-29  Score=176.19  Aligned_cols=155  Identities=24%  Similarity=0.322  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+++|++|||||||+++++.+.+.. +.++.+....    .+......+.+|||||++.+...+..+++++|++++|+
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~~----~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~   75 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNVE----TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCEE----EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeEE----EEEECCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence            589999999999999999998877654 4556653322    23335578999999999999888888999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+...     .+...+++++++||++|.|++++|++
T Consensus        76 d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~  155 (164)
T 1r8s_A           76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (164)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             ECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHH
Confidence            999999999888888777553  35899999999999976432222221     12234567999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |.+.+.+
T Consensus       156 l~~~i~~  162 (164)
T 1r8s_A          156 LSNQLRN  162 (164)
T ss_dssp             HHHHC--
T ss_pred             HHHHHhh
Confidence            9987643

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.96  E-value=9e-29  Score=179.30  Aligned_cols=158  Identities=20%  Similarity=0.287  Sum_probs=123.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.++|+++|++|||||||+++++.+.+ ..+.++.+......  .+.  +..+.+|||||++.+...+..++..+|+++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~--~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii   90 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVETL--SYK--NLKLNVWDLGGQTSIRPYWRCYYADTAAVI   90 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEEEE--EET--TEEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceEEE--EEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence            5789999999999999999999887776 56667777544333  333  478999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHH-----hhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFH-----RKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|++++.++..+..|+..+...  ..+.|+++|+||+|+.+.....+.....     ...+++++++||++|.|++++
T Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  170 (183)
T 1moz_A           91 FVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEG  170 (183)
T ss_dssp             EEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHH
T ss_pred             EEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHH
Confidence            999999999999988888887654  3589999999999997643333322222     223457999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      +++|.+.+.+
T Consensus       171 ~~~l~~~~~~  180 (183)
T 1moz_A          171 LDWLIDVIKE  180 (183)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999997753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.96  E-value=2.2e-28  Score=178.37  Aligned_cols=159  Identities=19%  Similarity=0.261  Sum_probs=126.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++++.+.+.. +.++.+......  ..  ....+.+|||||++.+...+..+++.+|+++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~~~~--~~--~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii   94 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNLETL--QY--KNISFEVWDLGGQTGVRPYWRCYFSDTDAVI   94 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCEEEE--EE--TTEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEEEEE--EE--CCEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence            678999999999999999999987776643 556666443332  22  3578999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +|+|++++.++.....|+..+....  .+.|+++|+||+|+.+.....+..     ..+...+++++++||++|.|++++
T Consensus        95 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l  174 (189)
T 2x77_A           95 YVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEG  174 (189)
T ss_dssp             EEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHH
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHH
Confidence            9999999999998888887765532  589999999999997643222222     122334668999999999999999


Q ss_pred             HHHHHHHHhCC
Q 027607          164 FLYLARKLAGD  174 (221)
Q Consensus       164 ~~~l~~~l~~~  174 (221)
                      +++|.+.+.+.
T Consensus       175 ~~~l~~~i~~~  185 (189)
T 2x77_A          175 MDWLVERLREQ  185 (189)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            99999987654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.96  E-value=5.1e-29  Score=181.07  Aligned_cols=162  Identities=19%  Similarity=0.331  Sum_probs=121.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC--ccCCcccCCcceeeeeeEEEe---cCcEEEEEEEecCCcccccccccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTG--EFEKKYEPTIGVEVHPLDFFT---NCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ++||+|+|++|||||||+++|+..  .+...+.++.+.++......+   .+..+.+.+|||+|++.+..++..++++++
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~   81 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA   81 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence            589999999999999999998874  344556677777766555433   234678999999999999888888999999


Q ss_pred             EEEEEEECCCh-hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc-----HHHHHHHhhcCCe----EEEecccCC
Q 027607           88 CAIIMFDVTAR-LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQVTFHRKKNLQ----YYEISAKSN  157 (221)
Q Consensus        88 ~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~-----~~~~~~~~~~~~~----~~~~s~~~~  157 (221)
                      ++++|||++++ .++..+..|+..+.....+.|+++|+||+|+......     .....++...++.    ++++||++|
T Consensus        82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  161 (184)
T 2zej_A           82 LYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEE  161 (184)
T ss_dssp             EEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSC
T ss_pred             EEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccC
Confidence            99999999997 4789999999988776668999999999998754322     1223455556675    999999999


Q ss_pred             C-ChHHHHHHHHHHHhCC
Q 027607          158 Y-NFEKPFLYLARKLAGD  174 (221)
Q Consensus       158 ~-gv~~~~~~l~~~l~~~  174 (221)
                      . |+.+++..|.+.+...
T Consensus       162 ~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          162 SDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CHHHHHHHHHHHHHHHCC
T ss_pred             chhHHHHHHHHHHHHhcc
Confidence            7 9999999999877653

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.96  E-value=1.7e-28  Score=180.10  Aligned_cols=162  Identities=15%  Similarity=0.167  Sum_probs=118.3

Q ss_pred             CCcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee--eeEEEec-CcEEEEEEEecCCcccccccc---
Q 027607            6 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH--PLDFFTN-CGKIRFYCWDTAGQEKFGGLR---   79 (221)
Q Consensus         6 ~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~i~~~D~~g~~~~~~~~---   79 (221)
                      ......+.+||+++|++|||||||++++. +.+...  ++.+.+..  .....+. +..+.+.+|||+|++.+....   
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~   89 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY   89 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHH-SCCCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence            34566788999999999999999999755 444333  33333333  3333333 566899999999999987776   


Q ss_pred             ccccccccEEEEEEECCCh--hhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--------cc-HHHHHHHh----h
Q 027607           80 DGYYIHGQCAIIMFDVTAR--LTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VK-AKQVTFHR----K  144 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------~~-~~~~~~~~----~  144 (221)
                      ..+++++|++++|||+++.  .++..+..|+..+.....+.|+++|+||+|+.+..        +. .....++.    .
T Consensus        90 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~  169 (196)
T 3llu_A           90 EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEK  169 (196)
T ss_dssp             HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhc
Confidence            7899999999999999997  56666667777765556799999999999975421        11 12234455    5


Q ss_pred             cCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          145 KNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       145 ~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      .++.++++||++ .|++++|..|++.+
T Consensus       170 ~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          170 LHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             SCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             CCcceEEEEech-hhHHHHHHHHHHHh
Confidence            678999999999 99999999999865

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.95  E-value=3e-27  Score=186.64  Aligned_cols=163  Identities=25%  Similarity=0.443  Sum_probs=137.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ...++|+++|.+|||||||+++++.+.+...+.++.+..+ .....+++..+.+.+|||||++.+...+..+++.+|+++
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i  231 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL  231 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence            4569999999999999999999998888777777776444 445667778889999999999999999999999999999


Q ss_pred             EEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcCC-eEEEecc
Q 027607           91 IMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKNL-QYYEISA  154 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~~-~~~~~s~  154 (221)
                      +|||++++.++..+. .|+..+.....+.|+++|+||+|+.+.             .. ..+...++...++ +++++||
T Consensus       232 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa  311 (332)
T 2wkq_A          232 ICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA  311 (332)
T ss_dssp             EEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCT
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999887 688888777678999999999998542             12 2344566777776 8999999


Q ss_pred             cCCCChHHHHHHHHHHHhCC
Q 027607          155 KSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~~~  174 (221)
                      ++|.|++++|.+|.+.+...
T Consensus       312 ~~~~gi~~l~~~l~~~~~~~  331 (332)
T 2wkq_A          312 LTQRGLKTVFDEAIRAVLCP  331 (332)
T ss_dssp             TTCTTHHHHHHHHHHHHHC-
T ss_pred             CCCcCHHHHHHHHHHHHhcC
Confidence            99999999999999987653

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.95  E-value=9.1e-27  Score=171.21  Aligned_cols=162  Identities=33%  Similarity=0.571  Sum_probs=137.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..++|+|+|++|||||||+++++...+...+.++.+.+.....+.+++..+.+.+||++|++.++..+..++..++++++
T Consensus         4 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~   83 (199)
T 2f9l_A            4 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALL   83 (199)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEE
Confidence            46999999999999999999999888777777888888877788888888899999999999988888888999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|+++..++..+..|+..+.... ...|+++|+||+|+....  ...++..++...++.++++|++++.|+.++|++|.
T Consensus        84 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A           84 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence            999999999999888887776543 478999999999986532  23445677778889999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+..
T Consensus       164 ~~~~~  168 (199)
T 2f9l_A          164 TEIYR  168 (199)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98765

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.92  E-value=3.3e-30  Score=190.30  Aligned_cols=162  Identities=27%  Similarity=0.471  Sum_probs=131.7

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+...+.++.+... .....+++..+.+.+|||||++.+...+..+++++|+
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~  104 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDV  104 (204)
Confidence            345789999999999999999999988887666666665333 3344556667888999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcCC-eEEEe
Q 027607           89 AIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKNL-QYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~~-~~~~~  152 (221)
                      +++|||++++.++..+. .|+..+.....+.|+++|+||+|+.+..              ...+...++...++ +++++
T Consensus       105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v  184 (204)
T 3th5_A          105 FLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC  184 (204)
Confidence            99999999999999886 7887777666689999999999986532              11233345556666 89999


Q ss_pred             cccCCCChHHHHHHHHHHH
Q 027607          153 SAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l  171 (221)
                      ||++|.|++++|++|.+.+
T Consensus       185 SA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          185 SALTQRGLKTVFDEAIRAV  203 (204)
Confidence            9999999999999998764

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.95  E-value=2.8e-26  Score=167.58  Aligned_cols=160  Identities=32%  Similarity=0.569  Sum_probs=138.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..++|+|+|++|||||||+++++...+...+.++.+.++....+.+++..+.+.+||++|.+.+...+..++..++++++
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~  107 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALL  107 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEE
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEE
Confidence            45899999999999999999999888877788899888888888888888889999999999988888889999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|+++..+++.+..|+..+.... ...|+++++||+|+.+..  ....+..++...++.++++|++++.|+.++|+.|.
T Consensus       108 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~  187 (191)
T 1oix_A          108 VYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTIL  187 (191)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence            999999999998888887765543 478999999999986532  23445677778889999999999999999999998


Q ss_pred             HHH
Q 027607          169 RKL  171 (221)
Q Consensus       169 ~~l  171 (221)
                      +.+
T Consensus       188 ~~i  190 (191)
T 1oix_A          188 TEI  190 (191)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            865

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.95  E-value=3.7e-27  Score=185.70  Aligned_cols=161  Identities=23%  Similarity=0.311  Sum_probs=120.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.+||+|+|.+|||||||+++|+.+.+... .+|.+.....    +....+.+.+|||||++.+..++..+++.+|+
T Consensus       161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~  235 (329)
T 3o47_A          161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQG  235 (329)
T ss_dssp             --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEE
T ss_pred             cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCE
Confidence            345778999999999999999999887776443 2455444332    33356889999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++|||+++..++..+..|+..+....  .+.|+++|+||+|+.+.....+....     ....+++++++||++|.|++
T Consensus       236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~  315 (329)
T 3o47_A          236 LIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLY  315 (329)
T ss_dssp             EEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHH
T ss_pred             EEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHH
Confidence            999999999999998888777765432  58999999999999765433332222     22345679999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 027607          162 KPFLYLARKLAGD  174 (221)
Q Consensus       162 ~~~~~l~~~l~~~  174 (221)
                      ++|++|.+.+.+.
T Consensus       316 el~~~l~~~l~~~  328 (329)
T 3o47_A          316 EGLDWLSNQLRNQ  328 (329)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987653

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.95  E-value=2.5e-27  Score=180.57  Aligned_cols=164  Identities=21%  Similarity=0.266  Sum_probs=121.4

Q ss_pred             ccCCceEEEEEcCC---------CCcHHHHHHHHhc---CccCCcccCCc-ceeeeeeEE--------------EecCcE
Q 027607            9 VDYPSFKLVIVGDG---------GTGKTTFVKRHLT---GEFEKKYEPTI-GVEVHPLDF--------------FTNCGK   61 (221)
Q Consensus         9 ~~~~~~~i~v~G~~---------gsGKStL~~~l~~---~~~~~~~~~~~-~~~~~~~~~--------------~~~~~~   61 (221)
                      ...+.+||+|+|.+         |||||||+++|+.   +.+...+.++. +.++....+              .+++..
T Consensus        15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   94 (255)
T 3c5h_A           15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVE   94 (255)
T ss_dssp             SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC--------
T ss_pred             CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcE
Confidence            45667999999999         9999999999998   44444444443 222221111              134567


Q ss_pred             EEEEEEe-----------------------cCCccccccccccccc---------------------cccEEEEEEECCC
Q 027607           62 IRFYCWD-----------------------TAGQEKFGGLRDGYYI---------------------HGQCAIIMFDVTA   97 (221)
Q Consensus        62 ~~i~~~D-----------------------~~g~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~   97 (221)
                      +.+.+||                       ++|++.+..++..++.                     ++|++++|||+++
T Consensus        95 ~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~  174 (255)
T 3c5h_A           95 CKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSR  174 (255)
T ss_dssp             -CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC
T ss_pred             EEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCC
Confidence            8899999                       7777878888888887                     7999999999999


Q ss_pred             h--hhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHHHHHhh-cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607           98 R--LTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus        98 ~--~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +  .+++.+..|+..+...  ..+.|+++|+||+|+.......+...++.. .++.++++||++|.|++++|.+|++.+.
T Consensus       175 ~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l~  254 (255)
T 3c5h_A          175 GMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLID  254 (255)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            8  8999999999888664  368999999999998654333455556655 4789999999999999999999998763

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.94  E-value=1.9e-26  Score=171.24  Aligned_cols=158  Identities=19%  Similarity=0.217  Sum_probs=111.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcccccc-cccccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFGG-LRDGYYIHGQ   87 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~~-~~~~~~~~~d   87 (221)
                      ..+.+||+|+|++|||||||+++|+.+.+...+.++. ....  .+.+++. .+.+.+|||||++.+.. ++..+++.++
T Consensus         4 ~~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~   80 (214)
T 2fh5_B            4 KSSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSA--IYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSAR   80 (214)
T ss_dssp             ----CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEE--EEECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeE--EEEecCCCccEEEEEECCCChhHHHHHHHHHHhhCC
Confidence            3467999999999999999999999888766654332 2333  2445543 68899999999998887 7788899999


Q ss_pred             EEEEEEECCChh-hhccHHHHHHH-HHhh---cCCCCEEEEEeCCCcCCccccHHHHH----------------------
Q 027607           88 CAIIMFDVTARL-TYKNVPTWHRD-LCRV---CENIPIVLCGNKVDVKNRQVKAKQVT----------------------  140 (221)
Q Consensus        88 ~~i~v~d~~~~~-s~~~~~~~~~~-~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~----------------------  140 (221)
                      ++++|+|+++.. ++.....++.. +...   ..+.|+++|+||+|+...........                      
T Consensus        81 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~  160 (214)
T 2fh5_B           81 AVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS  160 (214)
T ss_dssp             EEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC--------
T ss_pred             EEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccC
Confidence            999999999854 35444444333 3321   24789999999999865432211110                      


Q ss_pred             --------------HHh-hc--CCeEEEecccCC------CChHHHHHHHHHH
Q 027607          141 --------------FHR-KK--NLQYYEISAKSN------YNFEKPFLYLARK  170 (221)
Q Consensus       141 --------------~~~-~~--~~~~~~~s~~~~------~gv~~~~~~l~~~  170 (221)
                                    ++. ..  ++.|+++||++|      .|++++|.+|++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          161 SSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             CccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence                          011 11  678999999999      9999999999875

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.94  E-value=3.7e-26  Score=164.72  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=117.4

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+.++|+|+|++|||||||+++|+.+.+...+.++.+.+.....+.+++  ..+.+|||||++.+...+..++..+|+
T Consensus         4 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~   81 (178)
T 2lkc_A            4 MVERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND--KKITFLDTPGHEAFTTMRARGAQVTDI   81 (178)
T ss_dssp             TCCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT--EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC--ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence            345789999999999999999999998877665555555555555555554  467899999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHh-------hcC--CeEEEecccCCCC
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR-------KKN--LQYYEISAKSNYN  159 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~--~~~~~~s~~~~~g  159 (221)
                      +++|+|+++........ ++..+..  .+.|+++|+||+|+..... .+......       ..+  +.++++||++|.|
T Consensus        82 ~i~v~d~~~~~~~~~~~-~l~~~~~--~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g  157 (178)
T 2lkc_A           82 VILVVAADDGVMPQTVE-AINHAKA--ANVPIIVAINKMDKPEANP-DRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEG  157 (178)
T ss_dssp             EEEEEETTCCCCHHHHH-HHHHHGG--GSCCEEEEEETTTSSCSCH-HHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHH
T ss_pred             EEEEEECCCCCcHHHHH-HHHHHHh--CCCCEEEEEECccCCcCCH-HHHHHHHHhcCcChhHcCCcccEEEEecCCCCC
Confidence            99999998843222211 2222222  3789999999999975321 11111111       122  5899999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 027607          160 FEKPFLYLARKLAGD  174 (221)
Q Consensus       160 v~~~~~~l~~~l~~~  174 (221)
                      ++++|++|++.+...
T Consensus       158 v~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          158 LDHLLEMILLVSEME  172 (178)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999977553

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.94  E-value=1.7e-26  Score=164.79  Aligned_cols=153  Identities=17%  Similarity=0.193  Sum_probs=109.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------ccccccc-
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI-   84 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~~-   84 (221)
                      +.++|+++|++|||||||+++|....+.....++.+.+.....+.+.  +..+.+|||||+..+..      +...+++ 
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~   79 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN--GEKFKVVDLPGVYSLTANSIDEIIARDYIIN   79 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET--TEEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC--CcEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence            46899999999999999999988765533222222222223333333  46899999999887653      2244554 


Q ss_pred             -cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           85 -HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        85 -~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                       +++++++|+|+++...   ...|+..+..  .+.|+++|+||+|+... ....+...++...+++++++||++|.|+++
T Consensus        80 ~~~~~~i~v~D~~~~~~---~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~  154 (165)
T 2wji_A           80 EKPDLVVNIVDATALER---NLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEE  154 (165)
T ss_dssp             HCCSEEEEEEETTCHHH---HHHHHHHHHH--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHH
T ss_pred             CCCCEEEEEecCCchhH---hHHHHHHHHh--cCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence             7999999999988543   3446655544  37999999999998542 222234556667788999999999999999


Q ss_pred             HHHHHHHHH
Q 027607          163 PFLYLARKL  171 (221)
Q Consensus       163 ~~~~l~~~l  171 (221)
                      +|.+|++.+
T Consensus       155 l~~~l~~~~  163 (165)
T 2wji_A          155 LKKAISIAV  163 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            999998865

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=4.4e-26  Score=178.05  Aligned_cols=170  Identities=17%  Similarity=0.163  Sum_probs=130.2

Q ss_pred             CcccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccccc---------
Q 027607            7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEKFG---------   76 (221)
Q Consensus         7 ~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~~~---------   76 (221)
                      .+.+++.-.|+++|.+|||||||+|+|++..+. ...+..+++........... ...+.+|||||.....         
T Consensus         4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~-i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~   82 (308)
T 3iev_A            4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS-IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSM   82 (308)
T ss_dssp             ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred             CCCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc-ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHH
Confidence            345678899999999999999999998866653 44566667776665555555 7889999999986544         


Q ss_pred             -cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC-CccccHHH-HHHHhhcC--CeEEE
Q 027607           77 -GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKN--LQYYE  151 (221)
Q Consensus        77 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~-~~~~~~~~-~~~~~~~~--~~~~~  151 (221)
                       .....++..+|++++|+|+++..++.....|+..+...  +.|+++|+||+|+. +.....+. ..+....+  ..+++
T Consensus        83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~  160 (308)
T 3iev_A           83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL--NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP  160 (308)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG--CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred             HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc--CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence             34456688999999999999988887777767766653  79999999999987 44433333 34444544  78999


Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCcc
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHF  179 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~  179 (221)
                      +||++|.|+++++.+|.+.+...+..+.
T Consensus       161 vSA~~g~gv~~L~~~l~~~l~~~~~~~~  188 (308)
T 3iev_A          161 ISALKGANLDELVKTILKYLPEGEPLFP  188 (308)
T ss_dssp             CBTTTTBSHHHHHHHHHHHSCBCCCSSC
T ss_pred             EeCCCCCCHHHHHHHHHHhCccCCCCCC
Confidence            9999999999999999998877766543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.94  E-value=1.2e-25  Score=168.61  Aligned_cols=162  Identities=12%  Similarity=0.077  Sum_probs=111.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc---------cccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG---------GLRD   80 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~---------~~~~   80 (221)
                      +.+.++|+|+|++|||||||+++|+.+.+..  .+..+.+.......+......+.+|||||.....         ....
T Consensus        26 ~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~  103 (228)
T 2qu8_A           26 NPHKKTIILSGAPNVGKSSFMNIVSRANVDV--QSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT  103 (228)
T ss_dssp             CTTSEEEEEECSTTSSHHHHHHHHTTTCEEE--ECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH
Confidence            3567999999999999999999988776542  2222333333222222234789999999983211         1113


Q ss_pred             cccccccEEEEEEECCChhhhccH--HHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccH----HHHHHHhhcC--CeEEE
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKA----KQVTFHRKKN--LQYYE  151 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~----~~~~~~~~~~--~~~~~  151 (221)
                      .++..+|++++|+|+++..++...  ..|+..+.....+.|+++|+||+|+.... ...    ....++...+  +.+++
T Consensus       104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (228)
T 2qu8_A          104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSS  183 (228)
T ss_dssp             HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEE
Confidence            346778999999999999887622  24555554444589999999999986532 222    2334555555  88999


Q ss_pred             ecccCCCChHHHHHHHHHHHhC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|.+|++.+..
T Consensus       184 ~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          184 FSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998754

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.94  E-value=8.9e-26  Score=176.33  Aligned_cols=158  Identities=20%  Similarity=0.272  Sum_probs=122.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC---CcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-----cccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE---KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-----GGLRDGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-----~~~~~~~~   83 (221)
                      +.+||+++|++|||||||+++++.+...   ..+.+|.+......  .+. +.+.+.+|||||++.+     ...+..++
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~--~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~   78 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHL--RFL-GNMTLNLWDCGGQDVFMENYFTKQKDHIF   78 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEE--EET-TTEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEE--EeC-CceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence            5689999999999999999998876321   13444555444432  233 3689999999999887     67888889


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHH---HhhcCCCCEEEEEeCCCcCCc--c------ccHHHHHHHhhcC---CeE
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDL---CRVCENIPIVLCGNKVDVKNR--Q------VKAKQVTFHRKKN---LQY  149 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~---~~~~~~~p~ivv~nK~D~~~~--~------~~~~~~~~~~~~~---~~~  149 (221)
                      +++|++++|||+++..+++.+..|...+   ....++.|+++|+||+|+...  .      ...+...++...+   +++
T Consensus        79 ~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~  158 (307)
T 3r7w_A           79 QMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG  158 (307)
T ss_dssp             TTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred             ccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence            9999999999999999999887775544   444568999999999999762  1      1234456777776   789


Q ss_pred             EEecccCCCChHHHHHHHHHHHhC
Q 027607          150 YEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +++|+++ .|+.++|..+++.+..
T Consensus       159 ~~tSa~~-~~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          159 FPTSIWD-ESLYKAWSQIVCSLIP  181 (307)
T ss_dssp             EECCTTS-SHHHHHHHHHHHTTCS
T ss_pred             EEeeecC-ChHHHHHHHHHHHHcC
Confidence            9999999 8999999888886644

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.93  E-value=1.7e-25  Score=163.61  Aligned_cols=157  Identities=13%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~~~   79 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...+.++.+.+........+.   .+.+|||||          ++.+..++
T Consensus        20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   96 (195)
T 1svi_A           20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI   96 (195)
T ss_dssp             CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence            34679999999999999999999988876667777777777666555543   589999999          55566666


Q ss_pred             ccccccc---cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHH-HHhhcCCeEEE
Q 027607           80 DGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVT-FHRKKNLQYYE  151 (221)
Q Consensus        80 ~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~-~~~~~~~~~~~  151 (221)
                      ..++..+   |++++|+|+++..++.... +...+..  .+.|+++|+||+|+........    ... +....+..+++
T Consensus        97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (195)
T 1svi_A           97 ETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY--YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELIL  173 (195)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH--TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEE
T ss_pred             HHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEE
Confidence            6777666   9999999999877665532 2222222  4789999999999976433222    111 22234678999


Q ss_pred             ecccCCCChHHHHHHHHHHHh
Q 027607          152 ISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +|+++|.|++++|++|.+.+.
T Consensus       174 ~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          174 FSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             CCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEccCCCCHHHHHHHHHHHhc
Confidence            999999999999999998753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.93  E-value=2.4e-25  Score=161.96  Aligned_cols=159  Identities=16%  Similarity=0.192  Sum_probs=116.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------cccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY   83 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~   83 (221)
                      .++.++|+++|++|||||||+++|+.+.+.....++.+.+.....+..  .+..+.+|||||+..+..      ++..++
T Consensus         4 ~~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   81 (188)
T 2wjg_A            4 HMKSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEY--NGEKFKVVDLPGVYSLTANSIDEIIARDYI   81 (188)
T ss_dssp             CCCEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEE--TTEEEEEEECCCCSCCSSSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEe--CCcEEEEEECCCcCccccccHHHHHHHHHH
Confidence            347799999999999999999998876543333333333333333333  347899999999887642      344455


Q ss_pred             c--cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           84 I--HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        84 ~--~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      .  .++++++|+|+++   ++....|+..+..  .+.|+++|+||+|+... ........++...+++++++|+++|.|+
T Consensus        82 ~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  156 (188)
T 2wjg_A           82 INEKPDLVVNIVDATA---LERNLYLTLQLME--MGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGI  156 (188)
T ss_dssp             HHHCCSEEEEEEEGGG---HHHHHHHHHHHHT--TTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred             hccCCCEEEEEecchh---HHHHHHHHHHHHh--cCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCH
Confidence            4  4899999999876   3445566666554  37899999999998543 2333455667777899999999999999


Q ss_pred             HHHHHHHHHHHhCCC
Q 027607          161 EKPFLYLARKLAGDP  175 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~  175 (221)
                      +++|.+|++.+....
T Consensus       157 ~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          157 EELKKAISIAVKDKK  171 (188)
T ss_dssp             HHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999876654

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.93  E-value=6e-26  Score=163.11  Aligned_cols=152  Identities=15%  Similarity=0.146  Sum_probs=108.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceee--eeeEEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV--HPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~   81 (221)
                      +.++|+++|++|||||||+++|...... ...+..+++.  ....+.+++  ..+.+|||||+.......        ..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~   79 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDG--MPLHIIDTAGLREASDEVERIGIERAWQ   79 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSTTCCCSCEEEEEEETT--EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc-eeeCCCCceeceeeEEEEECC--eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence            5689999999999999999998765432 1222333333  333444443  468999999986532211        13


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      +++.+|++++|+|+++..++. ...|+..+.... .+.|+++|+||+|+.+...     .++...+.+++++||++|.|+
T Consensus        80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~SA~~g~gv  153 (172)
T 2gj8_A           80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETL-----GMSEVNGHALIRLSARTGEGV  153 (172)
T ss_dssp             HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC-----EEEEETTEEEEECCTTTCTTH
T ss_pred             HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchh-----hhhhccCCceEEEeCCCCCCH
Confidence            578999999999999988876 346766665543 4799999999999854321     122334678999999999999


Q ss_pred             HHHHHHHHHHHh
Q 027607          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      +++|.+|.+.+.
T Consensus       154 ~~l~~~l~~~~~  165 (172)
T 2gj8_A          154 DVLRNHLKQSMG  165 (172)
T ss_dssp             HHHHHHHHHHC-
T ss_pred             HHHHHHHHHHhh
Confidence            999999998753

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.93  E-value=2e-25  Score=158.27  Aligned_cols=151  Identities=20%  Similarity=0.163  Sum_probs=101.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc-------ccccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------GGLRDGYYIHG   86 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-------~~~~~~~~~~~   86 (221)
                      .||+++|++|||||||+++++.+.+. ......+.+.......+...+..+.+|||||....       ...+..++..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSA-VVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDA   80 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCee-eccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhC
Confidence            58999999999999999998877642 12233333333333333223357899999998763       23345568899


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHHHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~~~  165 (221)
                      |++++|+|+++..+..  ..++...... .+.|+++|+||+|+.+..  .+...++ ..++ +++++|+++|.|++++|.
T Consensus        81 ~~~i~v~d~~~~~~~~--~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~--~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~  154 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQA--DYEVAEYLRR-KGKPVILVATKVDDPKHE--LYLGPLY-GLGFGDPIPTSSEHARGLEELLE  154 (161)
T ss_dssp             SEEEEEEESSSCCCHH--HHHHHHHHHH-HTCCEEEEEECCCSGGGG--GGCGGGG-GGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CEEEEEEECCCcccHh--HHHHHHHHHh-cCCCEEEEEECcccccch--HhHHHHH-hCCCCCeEEEecccCCChHHHHH
Confidence            9999999999864332  2222222221 379999999999987652  2223334 5566 799999999999999999


Q ss_pred             HHHHHH
Q 027607          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|.+.+
T Consensus       155 ~l~~~l  160 (161)
T 2dyk_A          155 AIWERL  160 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.93  E-value=2e-25  Score=170.15  Aligned_cols=155  Identities=12%  Similarity=0.081  Sum_probs=118.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------cccc-
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------DGYY-   83 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------~~~~-   83 (221)
                      .+.++|+++|++|||||||+|+|++..+.  ....+|++.......+...+..+.+|||||...+...+      ..++ 
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~   80 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLL   80 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHh
Confidence            45799999999999999999998876653  23344666666666665556899999999988776533      4455 


Q ss_pred             -ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607           84 -IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        84 -~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                       ..+|++++|+|+++..+..   .|...+...  +.|+++|+||+|+... ....+...++...+++++++||++|.|++
T Consensus        81 ~~~~d~ii~V~D~t~~~~~~---~~~~~l~~~--~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~  155 (258)
T 3a1s_A           81 KGDADLVILVADSVNPEQSL---YLLLEILEM--EKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLE  155 (258)
T ss_dssp             HSCCSEEEEEEETTSCHHHH---HHHHHHHTT--TCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHH
T ss_pred             hcCCCEEEEEeCCCchhhHH---HHHHHHHhc--CCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHH
Confidence             5899999999999865432   344444433  7999999999998542 23334556777889999999999999999


Q ss_pred             HHHHHHHHHHh
Q 027607          162 KPFLYLARKLA  172 (221)
Q Consensus       162 ~~~~~l~~~l~  172 (221)
                      ++|.+|.+.+.
T Consensus       156 el~~~i~~~~~  166 (258)
T 3a1s_A          156 ELKEKIVEYAQ  166 (258)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhh
Confidence            99999999765

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.93  E-value=5.1e-26  Score=176.52  Aligned_cols=152  Identities=14%  Similarity=0.123  Sum_probs=111.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCC---cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---ccccccccccE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEK---KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---LRDGYYIHGQC   88 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---~~~~~~~~~d~   88 (221)
                      ||+++|+.|||||||++++..+....   .+.+|.|.....    +. ..+.+++|||+|+++++.   .+..|++++++
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~   75 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA   75 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence            68999999999999999866543322   245666665543    22 347899999999999964   35789999999


Q ss_pred             EEEEEECCChhhhccHH---HHHHHHHhhcCCCCEEEEEeCCCcCCcc--------ccHH-HHHHHhh----cCCeEEEe
Q 027607           89 AIIMFDVTARLTYKNVP---TWHRDLCRVCENIPIVLCGNKVDVKNRQ--------VKAK-QVTFHRK----KNLQYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~---~~~~~~~~~~~~~p~ivv~nK~D~~~~~--------~~~~-~~~~~~~----~~~~~~~~  152 (221)
                      +++|||+++. .++...   .|+..+....++.|+++|+||+|+....        +..+ ..+++..    .++.|+++
T Consensus        76 ~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eT  154 (331)
T 3r7w_B           76 LVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLT  154 (331)
T ss_dssp             EEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECC
T ss_pred             EEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEe
Confidence            9999999998 333333   3344444455789999999999996532        2222 2344553    57899999


Q ss_pred             cccCCCChHHHHHHHHHHHhC
Q 027607          153 SAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ||++ .++.++|..|++.+.+
T Consensus       155 SAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          155 SIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CSSS-SHHHHHHHHHHTTSST
T ss_pred             ccCC-CcHHHHHHHHHHHHHh
Confidence            9998 5899999999987654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.93  E-value=5.3e-25  Score=171.14  Aligned_cols=164  Identities=19%  Similarity=0.119  Sum_probs=116.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc--------ccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF--------GGLRDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~--------~~~~~~~   82 (221)
                      .+..+|+++|.+|||||||+|+|+...+. ...+.++++.......+......+.+|||||....        ......+
T Consensus         5 ~~~g~V~ivG~~nvGKSTLln~l~g~~~~-ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            5 TYSGFVAIVGKPNVGKSTLLNNLLGVKVA-PISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEA   83 (301)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHTSCCS-CCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHhCCcee-eecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence            46778999999999999999998876653 23344455555544444445678999999998653        3344567


Q ss_pred             cccccEEEEEEECCChhhhccHHHHH-HHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      ++.+|++++|+|+++..+..  ..|+ ..+.....+.|+++|+||+|+..... ..+..... .....++++||++|.|+
T Consensus        84 l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~-~~~~~~~~iSA~~g~gv  160 (301)
T 1wf3_A           84 LADVNAVVWVVDLRHPPTPE--DELVARALKPLVGKVPILLVGNKLDAAKYPEEAMKAYHEL-LPEAEPRMLSALDERQV  160 (301)
T ss_dssp             TSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGTTTSCEEEEEECGGGCSSHHHHHHHHHHT-STTSEEEECCTTCHHHH
T ss_pred             HhcCCEEEEEEECCCCCChH--HHHHHHHHHhhcCCCCEEEEEECcccCCchHHHHHHHHHh-cCcCcEEEEeCCCCCCH
Confidence            88999999999998874433  3443 34444335799999999999875432 11211111 22357899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCc
Q 027607          161 EKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~  178 (221)
                      ++++..|.+.+...+..+
T Consensus       161 ~~l~~~l~~~l~~~~~~y  178 (301)
T 1wf3_A          161 AELKADLLALMPEGPFFY  178 (301)
T ss_dssp             HHHHHHHHTTCCBCCCSS
T ss_pred             HHHHHHHHHhcccCCCCC
Confidence            999999998776665443

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.92  E-value=2.3e-25  Score=186.29  Aligned_cols=165  Identities=21%  Similarity=0.294  Sum_probs=122.1

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEE--------EecCcEEEEEEEecCCccccccccc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF--------FTNCGKIRFYCWDTAGQEKFGGLRD   80 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~i~~~D~~g~~~~~~~~~   80 (221)
                      ...+.+||+++|.+|||||||+++++.+.+...+.++.+.+......        ...+..+.+.+|||||++.+.....
T Consensus        37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~  116 (535)
T 3dpu_A           37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ  116 (535)
T ss_dssp             BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence            45678999999999999999999999888877777888776664421        1223467899999999999999999


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCC
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      .+++.+|++++|+|+++.   +....|...+.....+.|+++|+||+|+.... . ..+....+...+++++++||++|.
T Consensus       117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~  193 (535)
T 3dpu_A          117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGD  193 (535)
T ss_dssp             HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC----
T ss_pred             HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCccc
Confidence            999999999999998764   56778888888877789999999999986532 2 233456667778899999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027607          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~  176 (221)
                      |+++++.+|++.+...+.
T Consensus       194 gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          194 GVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             -CTTHHHHHHHHHTCTTS
T ss_pred             CHHHHHHHHHHHHhcccc
Confidence            999999999998877654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.92  E-value=1.4e-24  Score=158.53  Aligned_cols=159  Identities=14%  Similarity=0.167  Sum_probs=112.3

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGG   77 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~   77 (221)
                      ......++|+|+|++|||||||+++|+.+. ...+.++.+.+..........   .+.+|||||          ++.+..
T Consensus        18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~   93 (195)
T 3pqc_A           18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR   93 (195)
T ss_dssp             CCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence            344577999999999999999999988776 445566777666655444443   478999999          445555


Q ss_pred             ccccccccc---cEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH----HHHHHHhh-cCCeE
Q 027607           78 LRDGYYIHG---QCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA----KQVTFHRK-KNLQY  149 (221)
Q Consensus        78 ~~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~----~~~~~~~~-~~~~~  149 (221)
                      ++..+++.+   +++++|+|+++..+.... .+...+...  +.|+++|+||+|+.+.....    +....+.. ..+++
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~-~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~  170 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDL-MMVEWMKSL--NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTI  170 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCE
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHH-HHHHHHHHc--CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCce
Confidence            566666655   999999999875433222 112222222  79999999999986543222    22233444 34789


Q ss_pred             EEecccCCCChHHHHHHHHHHHhC
Q 027607          150 YEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       150 ~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +++||++|.|++++|++|.+.+.+
T Consensus       171 ~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          171 IPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             EEEecCCCCCHHHHHHHHHHHhhc
Confidence            999999999999999999997643

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.92  E-value=2.4e-25  Score=162.09  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=111.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC-----------ccccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-----------QEKFGGLRDGY   82 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g-----------~~~~~~~~~~~   82 (221)
                      +||+|+|++|||||||+++++.+.+...+.+  +.+.......+.    .+.+|||||           ++.+...+..+
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~t~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   75 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRP--GVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF   75 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCSSSSST--TCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCccCCCC--CccceeEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence            6899999999999999999998876544443  444444444433    588999999           45556666667


Q ss_pred             ccc-ccEEEEEEECCChhhhccH-HHHHHH--------HHh--hcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---
Q 027607           83 YIH-GQCAIIMFDVTARLTYKNV-PTWHRD--------LCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---  147 (221)
Q Consensus        83 ~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~--------~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---  147 (221)
                      ++. ++++++|+++.+..++..+ ..|...        +..  ...+.|+++|+||+|+.... ......++...++   
T Consensus        76 ~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~~~~  154 (190)
T 2cxx_A           76 IEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-QEVINFLAEKFEVPLS  154 (190)
T ss_dssp             HHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-HHHHHHHHHHHTCCGG
T ss_pred             HHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-HHHHHHHHHHhhhhhh
Confidence            776 7777777777777777665 455432        111  12489999999999997654 3334455555555   


Q ss_pred             ----eEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          148 ----QYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       148 ----~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                          .++++||++|.|++++|++|.+.+....
T Consensus       155 ~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          155 EIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             ccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence                4799999999999999999999876544

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.92  E-value=2e-25  Score=171.62  Aligned_cols=156  Identities=14%  Similarity=0.149  Sum_probs=114.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----------cc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----------~~   81 (221)
                      ++++|+++|.+|||||||+|+|++...  ......|++.......+...+..+.+|||||...+....          ..
T Consensus         2 ~~~~I~lvG~~n~GKSTLin~l~g~~~--~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~   79 (274)
T 3i8s_A            2 KKLTIGLIGNPNSGKTTLFNQLTGSRQ--RVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH   79 (274)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTTCE--EEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence            569999999999999999999887654  233445555555555555445678999999987766321          22


Q ss_pred             cc--ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCC
Q 027607           82 YY--IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        82 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      ++  ..+|++++|+|+++......+..+   +...  +.|+++|+||+|+... ........+....+++++++||++|.
T Consensus        80 ~~~~~~~d~ii~VvD~~~~~~~~~~~~~---l~~~--~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~  154 (274)
T 3i8s_A           80 YILSGDADLLINVVDASNLERNLYLTLQ---LLEL--GIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGR  154 (274)
T ss_dssp             HHHHTCCSEEEEEEEGGGHHHHHHHHHH---HHHH--TCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGH
T ss_pred             HHhhcCCCEEEEEecCCChHHHHHHHHH---HHhc--CCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCC
Confidence            22  689999999999986654433333   3333  8999999999998543 22223445667778999999999999


Q ss_pred             ChHHHHHHHHHHHhCC
Q 027607          159 NFEKPFLYLARKLAGD  174 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~  174 (221)
                      |+++++.+|.+.+...
T Consensus       155 gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          155 GIEALKLAIDRYKANE  170 (274)
T ss_dssp             HHHHHHHHHHTCCCCC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            9999999998866544

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.92  E-value=9e-25  Score=163.16  Aligned_cols=161  Identities=17%  Similarity=0.050  Sum_probs=114.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCcc----------ccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQE----------KFGGL   78 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~----------~~~~~   78 (221)
                      ....++|+|+|.+|||||||+|+|+.+........+.+++.......+. .....+.+|||||..          .+..+
T Consensus        26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~  105 (223)
T 4dhe_A           26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL  105 (223)
T ss_dssp             CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence            4467999999999999999999988776444556666666666555555 455789999999943          22344


Q ss_pred             ccccccc---ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHHHHh-------h
Q 027607           79 RDGYYIH---GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHR-------K  144 (221)
Q Consensus        79 ~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~-------~  144 (221)
                      ...++..   +|++++|+|+++..+.. ...++..+..  .+.|+++|+||+|+........    ......       .
T Consensus       106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~  182 (223)
T 4dhe_A          106 LSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP--TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYA  182 (223)
T ss_dssp             HHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG--GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh--cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccC
Confidence            4455554   78899999998753322 2234444444  3789999999999876433211    112222       2


Q ss_pred             cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          145 KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       145 ~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .+.+++++||++|.|+++++.+|.+.+..
T Consensus       183 ~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          183 GKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             SCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             CCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            56789999999999999999999997644

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.92  E-value=5e-25  Score=168.89  Aligned_cols=151  Identities=15%  Similarity=0.129  Sum_probs=116.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------ccccccc--
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYYI--   84 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~~--   84 (221)
                      .++|+++|++|||||||+|+|.+...  .....+|++.......+.. ...+.+|||||...+..      +...++.  
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~~--~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~   79 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHNQ--RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ   79 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCCC--CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCC--cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence            58999999999999999999876543  2334557777777777766 67899999999887653      3455554  


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      .+|++++|+|+++..+.   ..|...+..  .+.|+++|+||+|+... ........+....+++++++||++|.|++++
T Consensus        80 ~~d~vi~V~D~t~~e~~---~~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el  154 (272)
T 3b1v_A           80 RADSILNVVDATNLERN---LYLTTQLIE--TGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQV  154 (272)
T ss_dssp             CCSEEEEEEEGGGHHHH---HHHHHHHHH--TCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             CCCEEEEEecCCchHhH---HHHHHHHHh--cCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHH
Confidence            59999999999986543   344444443  38999999999998542 2333445667777899999999999999999


Q ss_pred             HHHHHHHH
Q 027607          164 FLYLARKL  171 (221)
Q Consensus       164 ~~~l~~~l  171 (221)
                      |.+|.+.+
T Consensus       155 ~~~i~~~~  162 (272)
T 3b1v_A          155 VKKAAHTT  162 (272)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHHH
Confidence            99998864

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.92  E-value=8e-24  Score=173.48  Aligned_cols=158  Identities=15%  Similarity=0.070  Sum_probs=98.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------cccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYY   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~~~   83 (221)
                      ..++|+|+|.+|||||||+|+|+.... .......+++.......+...+..+.+|||||...+...+        ..++
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~~-a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~  310 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQER-AIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKM  310 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC--------------------CCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC-cccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhc
Confidence            458999999999999999999765532 2334455555555444444345789999999987655433        3468


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ..+|++++|+|++++.++..+..+...+.. ..+.|+++|+||+|+........ ..+......+++++||++|.|++++
T Consensus       311 ~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~-l~~~piIvV~NK~Dl~~~~~~~~-~~l~~~~~~~~i~vSAktg~GI~eL  388 (476)
T 3gee_A          311 AEADLILYLLDLGTERLDDELTEIRELKAA-HPAAKFLTVANKLDRAANADALI-RAIADGTGTEVIGISALNGDGIDTL  388 (476)
T ss_dssp             SSCSEEEEEEETTTCSSGGGHHHHHHHHHH-CTTSEEEEEEECTTSCTTTHHHH-HHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred             ccCCEEEEEEECCCCcchhhhHHHHHHHHh-cCCCCEEEEEECcCCCCccchhH-HHHHhcCCCceEEEEECCCCCHHHH
Confidence            899999999999999888654444333322 23799999999999875433221 2222222378999999999999999


Q ss_pred             HHHHHHHHh
Q 027607          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +++|.+.+.
T Consensus       389 ~~~i~~~~~  397 (476)
T 3gee_A          389 KQHMGDLVK  397 (476)
T ss_dssp             HHHHTHHHH
T ss_pred             HHHHHHHHh
Confidence            999999886

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.91  E-value=3.6e-24  Score=164.55  Aligned_cols=158  Identities=17%  Similarity=0.137  Sum_probs=113.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc------cccccc--
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG------LRDGYY--   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~------~~~~~~--   83 (221)
                      +.++|+++|++|||||||+|+|++..+..  ....+.+.......+...+..+.+|||||...+..      ....++  
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~--~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~   79 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGLRQHV--GNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILD   79 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTTCEEE--EECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCCCccc--CCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence            56899999999999999999988765532  23344444444444443445799999999887665      344455  


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-cccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ..+|++++|+|+++...   ...|...+... ...|+++|+||+|+... ........+....+++++++|+++|.|+.+
T Consensus        80 ~~~d~vi~v~D~~~~~~---~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~  155 (271)
T 3k53_A           80 GNADVIVDIVDSTCLMR---NLFLTLELFEM-EVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEE  155 (271)
T ss_dssp             TCCSEEEEEEEGGGHHH---HHHHHHHHHHT-TCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHH
T ss_pred             cCCcEEEEEecCCcchh---hHHHHHHHHhc-CCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHH
Confidence            67999999999988642   22233333332 23999999999997542 222234556777889999999999999999


Q ss_pred             HHHHHHHHHhCCC
Q 027607          163 PFLYLARKLAGDP  175 (221)
Q Consensus       163 ~~~~l~~~l~~~~  175 (221)
                      ++..+.+.+....
T Consensus       156 l~~~i~~~~~~~~  168 (271)
T 3k53_A          156 LKRMIALMAEGKV  168 (271)
T ss_dssp             HHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999876544

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=1.3e-24  Score=165.34  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=110.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----------cccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----------LRDGYY   83 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----------~~~~~~   83 (221)
                      .+|+++|.+|||||||+|+|.+....  ....++++.......+..++..+.+|||||...+..          +...++
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~--v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQR--VGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEE--EEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC--ccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            48999999999999999998766543  233445555544444443445899999999877654          344556


Q ss_pred             --ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           84 --IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        84 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                        ..+|++++|+|+++..++..+..+   +..  .+.|+++|+||+|+.... .......+....+++++++||++|.|+
T Consensus        80 ~~~~~d~vi~VvDas~~~~~~~l~~~---l~~--~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi  154 (256)
T 3iby_A           80 IDLEYDCIINVIDACHLERHLYLTSQ---LFE--LGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGI  154 (256)
T ss_dssp             HHSCCSEEEEEEEGGGHHHHHHHHHH---HTT--SCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSH
T ss_pred             hhCCCCEEEEEeeCCCchhHHHHHHH---HHH--cCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCH
Confidence              789999999999987655443333   222  279999999999985432 223344566777899999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      ++++.+|.+.
T Consensus       155 ~el~~~i~~~  164 (256)
T 3iby_A          155 PALQQSLLHC  164 (256)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhh
Confidence            9999999886

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.90  E-value=4.5e-24  Score=172.29  Aligned_cols=159  Identities=18%  Similarity=0.216  Sum_probs=112.3

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccccccc-------
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR-------   79 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~~~~~-------   79 (221)
                      .....++|+|+|..|+|||||+++|+...+. ......+++....  ...+... ..+.+|||||+..+..+.       
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~-~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~  107 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVS-IVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKA  107 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCCC-ccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHH
Confidence            4556799999999999999999997766542 2233444444433  3333332 378999999998776553       


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCC
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g  159 (221)
                      ..++..+|++++|+|++..   .....|+..+...  +.|+++|+||+|+...........+....+++++++||++|.|
T Consensus       108 ~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~--~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~g  182 (423)
T 3qq5_A          108 RRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM--EIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKG  182 (423)
T ss_dssp             HHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT--TCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTS
T ss_pred             HHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc--CCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence            3368889999999998332   2334566666554  8999999999999776555555566667788999999999999


Q ss_pred             hHHHHHHHHHHHhCC
Q 027607          160 FEKPFLYLARKLAGD  174 (221)
Q Consensus       160 v~~~~~~l~~~l~~~  174 (221)
                      ++++|++|.+.+...
T Consensus       183 I~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          183 FDDIGKTISEILPGD  197 (423)
T ss_dssp             TTTHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhhhhh
Confidence            999999999988554

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.89  E-value=2e-22  Score=156.81  Aligned_cols=163  Identities=17%  Similarity=0.131  Sum_probs=114.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc---------cccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE---------KFGGLRDG   81 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~---------~~~~~~~~   81 (221)
                      .+..+|+++|++|||||||+|+|+..... ...+..+++.......+......+.+|||||..         .+......
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~-i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~   84 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQKIS-ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS   84 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCSEE-ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCCcc-ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence            45678999999999999999998866542 233444555554444444456789999999987         34455567


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-cccc-HHHHHHHhhcCC-eEEEecccCCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVK-AKQVTFHRKKNL-QYYEISAKSNY  158 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~-~~~~~~~~~~~~-~~~~~s~~~~~  158 (221)
                      ++..+|++++|+|+++   +.....|+..... ..+.|+++|+||+|+.. +... .....+....++ .++++|+++|.
T Consensus        85 ~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~-~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~  160 (301)
T 1ega_A           85 SIGDVELVIFVVEGTR---WTPDDEMVLNKLR-EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL  160 (301)
T ss_dssp             CCCCEEEEEEEEETTC---CCHHHHHHHHHHH-SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT
T ss_pred             HHhcCCEEEEEEeCCC---CCHHHHHHHHHHH-hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC
Confidence            7889999999999976   3333333322221 23789999999999876 2222 222334444555 69999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCc
Q 027607          159 NFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~  178 (221)
                      |+.++++.|.+.+...+..+
T Consensus       161 ~v~~l~~~i~~~l~~~~~~~  180 (301)
T 1ega_A          161 NVDTIAAIVRKHLPEATHHF  180 (301)
T ss_dssp             THHHHHHHHHTTCCBCCCSS
T ss_pred             CHHHHHHHHHHhCCcCCCCC
Confidence            99999999998776665443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.89  E-value=1.5e-22  Score=161.26  Aligned_cols=160  Identities=19%  Similarity=0.135  Sum_probs=115.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------cccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDG   81 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------~~~~   81 (221)
                      ...++|+++|++|||||||+++|......  .....+.+.......+......+.+|||||......         ....
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  242 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAKPE--IASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILA  242 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSCCE--EECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHH
Confidence            46789999999999999999997765532  111222222222223332356799999999754321         1112


Q ss_pred             ccccccEEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCC
Q 027607           82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g  159 (221)
                      +...+|++++|+|+++..  ++.....|+..+.....+.|+++|+||+|+.......+...++...+++++++||++|.|
T Consensus       243 ~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~g  322 (357)
T 2e87_A          243 LRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTG  322 (357)
T ss_dssp             GGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBT
T ss_pred             HHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcC
Confidence            345689999999998876  566677788777665558999999999999765433444555666788999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 027607          160 FEKPFLYLARKLA  172 (221)
Q Consensus       160 v~~~~~~l~~~l~  172 (221)
                      +++++++|.+.+.
T Consensus       323 i~~l~~~i~~~l~  335 (357)
T 2e87_A          323 IDLVKEEIIKTLR  335 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=4.6e-24  Score=158.82  Aligned_cols=143  Identities=17%  Similarity=0.175  Sum_probs=100.7

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCc---ccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~   84 (221)
                      ....+.++|+|+|++|||||||+++|+.+.+...   +.++.+         .......+.+|||||++.++..+..+++
T Consensus         7 ~~~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~   77 (218)
T 1nrj_B            7 KQKSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLK   77 (218)
T ss_dssp             ---CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEE---------TTGGGSSCEEEECCCCGGGTHHHHHHHH
T ss_pred             CccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEE---------EEeeCceEEEEECCCcHHHHHHHHHHHH
Confidence            3456789999999999999999999888775432   112211         1114567899999999999888888887


Q ss_pred             c----ccEEEEEEECC-ChhhhccHHHHHHHHHhh-----cCCCCEEEEEeCCCcCCcccc--------HHHHHHHhhcC
Q 027607           85 H----GQCAIIMFDVT-ARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKKN  146 (221)
Q Consensus        85 ~----~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~-----~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~  146 (221)
                      .    ++++++|+|++ +..++.....|+..+...     ..+.|+++|+||+|+......        .+...++...+
T Consensus        78 ~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~  157 (218)
T 1nrj_B           78 TRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRK  157 (218)
T ss_dssp             HHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            7    89999999999 888898888888777553     258999999999999764332        22334555566


Q ss_pred             CeEEEecccCCCC
Q 027607          147 LQYYEISAKSNYN  159 (221)
Q Consensus       147 ~~~~~~s~~~~~g  159 (221)
                      +.++++|+++|.+
T Consensus       158 ~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          158 KSLNEVERKINEE  170 (218)
T ss_dssp             HHHHC--------
T ss_pred             ccccccccccccc
Confidence            7889999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.88  E-value=1.4e-22  Score=165.51  Aligned_cols=152  Identities=17%  Similarity=0.201  Sum_probs=102.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc---------ccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF---------GGLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~---------~~~~~~~~~   84 (221)
                      .+|+++|.+|||||||+|+|+.+.. ..+..++|++.......+...+..+.+|||||.+..         ...+..+++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~   80 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIR   80 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC-ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHH
Confidence            3799999999999999999886653 334567777776665555445567899999997642         233455789


Q ss_pred             cccEEEEEEECCChhhhcc--HHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHH-HHHHhhcCC-eEEEecccCCCCh
Q 027607           85 HGQCAIIMFDVTARLTYKN--VPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNL-QYYEISAKSNYNF  160 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~-~~~~~~~~~-~~~~~s~~~~~gv  160 (221)
                      .+|++++|+|+++..+..+  +..|+.   .  .++|+++|+||+|+.... ..+. ..+. ..++ .++++||.+|.|+
T Consensus        81 ~ad~il~V~D~~~~~~~~d~~i~~~l~---~--~~~p~ilv~NK~D~~~~~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv  153 (439)
T 1mky_A           81 EADLVLFVVDGKRGITKEDESLADFLR---K--STVDTILVANKAENLREF-EREVKPELY-SLGFGEPIPVSAEHNINL  153 (439)
T ss_dssp             TCSEEEEEEETTTCCCHHHHHHHHHHH---H--HTCCEEEEEESCCSHHHH-HHHTHHHHG-GGSSCSCEECBTTTTBSH
T ss_pred             hCCEEEEEEECCCCCCHHHHHHHHHHH---H--cCCCEEEEEeCCCCcccc-HHHHHHHHH-hcCCCCEEEEeccCCCCH
Confidence            9999999999987654432  222222   2  279999999999985431 1222 3333 4555 6899999999999


Q ss_pred             HHHHHHHHHHHhC
Q 027607          161 EKPFLYLARKLAG  173 (221)
Q Consensus       161 ~~~~~~l~~~l~~  173 (221)
                      .+++++|.+.+..
T Consensus       154 ~~L~~~i~~~l~~  166 (439)
T 1mky_A          154 DTMLETIIKKLEE  166 (439)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccc
Confidence            9999999998864

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.88  E-value=1.6e-22  Score=165.25  Aligned_cols=153  Identities=14%  Similarity=0.151  Sum_probs=99.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCcEEEEEEEecCCcccccccc--------cc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCGKIRFYCWDTAGQEKFGGLR--------DG   81 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~   81 (221)
                      ..++|+++|++|||||||+|+|+..... ......+++....  .+.++  +..+.+|||||.......+        ..
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a-~v~~~~gtT~d~~~~~i~~~--g~~v~liDT~G~~~~~~~ve~~gi~~~~~  299 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDRA-IVTDLPGTTRDVVESQLVVG--GIPVQVLDTAGIRETSDQVEKIGVERSRQ  299 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHBS-CCSCCTTCCHHHHHHEEEET--TEEEEECC--------------------C
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCcc-cccCCCCeeEEEEEEEEEEC--CEEEEEEECCccccchhHHHHHHHHHHhh
Confidence            4589999999999999999998765432 1222334443332  33333  4678999999976543322        33


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      ++..+|++++|+|++++.+... ..|+..+    ...|+++|+||+|+...........+.  ...+++++|+++|.|++
T Consensus       300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l----~~~piivV~NK~Dl~~~~~~~~~~~~~--~~~~~i~iSAktg~Gi~  372 (462)
T 3geh_A          300 AANTADLVLLTIDAATGWTTGD-QEIYEQV----KHRPLILVMNKIDLVEKQLITSLEYPE--NITQIVHTAAAQKQGID  372 (462)
T ss_dssp             CCCSCSEEEEEEETTTCSCHHH-HHHHHHH----TTSCEEEEEECTTSSCGGGSTTCCCCT--TCCCEEEEBTTTTBSHH
T ss_pred             hhhcCCEEEEEeccCCCCCHHH-HHHHHhc----cCCcEEEEEECCCCCcchhhHHHHHhc--cCCcEEEEECCCCCCHH
Confidence            5788999999999998765443 2333333    357999999999987543322111111  45689999999999999


Q ss_pred             HHHHHHHHHHhCC
Q 027607          162 KPFLYLARKLAGD  174 (221)
Q Consensus       162 ~~~~~l~~~l~~~  174 (221)
                      +++++|.+.+...
T Consensus       373 eL~~~i~~~~~~~  385 (462)
T 3geh_A          373 SLETAILEIVQTG  385 (462)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999987654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.88  E-value=6.6e-23  Score=168.18  Aligned_cols=153  Identities=20%  Similarity=0.175  Sum_probs=108.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-ccccc--------ccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-KFGGL--------RDGYY   83 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-~~~~~--------~~~~~   83 (221)
                      .++|+++|.+|||||||+|+|+.... .......+++.+.....+..++..+.+|||||.. .+...        ...++
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~-a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~  321 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDR-AIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEI  321 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTB-CCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHH
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCC-CccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHh
Confidence            38999999999999999999876543 2233444555544433333345679999999987 54422        23467


Q ss_pred             ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           84 IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ..+|++++|+|++++.+++... ++..+    .+.|+++|+||+|+.......+...+. ..+.+++++||++|.|++++
T Consensus       322 ~~aD~vl~VvD~s~~~s~~~~~-il~~l----~~~piivV~NK~DL~~~~~~~~~~~~~-~~~~~~i~iSAktg~Gi~eL  395 (482)
T 1xzp_A          322 EKADIVLFVLDASSPLDEEDRK-ILERI----KNKRYLVVINKVDVVEKINEEEIKNKL-GTDRHMVKISALKGEGLEKL  395 (482)
T ss_dssp             HHCSEEEEEEETTSCCCHHHHH-HHHHH----TTSSEEEEEEECSSCCCCCHHHHHHHH-TCSTTEEEEEGGGTCCHHHH
T ss_pred             hcccEEEEEecCCCCCCHHHHH-HHHHh----cCCCEEEEEECcccccccCHHHHHHHh-cCCCcEEEEECCCCCCHHHH
Confidence            8999999999999887765533 22222    478999999999996542222222222 23468999999999999999


Q ss_pred             HHHHHHHHh
Q 027607          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +.+|.+.+.
T Consensus       396 ~~~l~~~~~  404 (482)
T 1xzp_A          396 EESIYRETQ  404 (482)
T ss_dssp             HHHHHHHTH
T ss_pred             HHHHHHHHh
Confidence            999999765

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.1e-22  Score=160.21  Aligned_cols=158  Identities=18%  Similarity=0.222  Sum_probs=113.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCcc----ccccccccccc---cc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQE----KFGGLRDGYYI---HG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~----~~~~~~~~~~~---~~   86 (221)
                      +|+|+|.+|||||||+++|+.....  ......++.......+... ...+.+|||||..    ....+...+++   .+
T Consensus       160 ~V~lvG~~nvGKSTLln~L~~~~~~--i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~  237 (342)
T 1lnz_A          160 DVGLVGFPSVGKSTLLSVVSSAKPK--IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT  237 (342)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECCE--ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eeeeeCCCCCCHHHHHHHHHcCCCc--cccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHhc
Confidence            6899999999999999997765431  1222222322222222222 2579999999953    33444455554   49


Q ss_pred             cEEEEEEECCC---hhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCC
Q 027607           87 QCAIIMFDVTA---RLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNY  158 (221)
Q Consensus        87 d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~  158 (221)
                      +++++|+|+++   ..++..+..|...+..+.   ..+|+++|+||+|+....  .....+.....  .+++++||+++.
T Consensus       238 d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~--e~~~~l~~~l~~~~~v~~iSA~tg~  315 (342)
T 1lnz_A          238 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA--ENLEAFKEKLTDDYPVFPISAVTRE  315 (342)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH--HHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred             cEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH--HHHHHHHHHhhcCCCEEEEECCCCc
Confidence            99999999998   778888888888887754   479999999999987543  22233344444  679999999999


Q ss_pred             ChHHHHHHHHHHHhCCCC
Q 027607          159 NFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~  176 (221)
                      |+++++.+|.+.+...+.
T Consensus       316 gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          316 GLRELLFEVANQLENTPE  333 (342)
T ss_dssp             TTHHHHHHHHHHHTSCCC
T ss_pred             CHHHHHHHHHHHHhhCcc
Confidence            999999999998877654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=1.2e-22  Score=165.89  Aligned_cols=159  Identities=15%  Similarity=0.143  Sum_probs=108.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc----------cccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK----------FGGLRD   80 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~----------~~~~~~   80 (221)
                      ...++|+++|.+|||||||+|+|+..... ......+++.......+...+..+.+|||||+..          +...+.
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~-~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGEERV-IVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTSTTE-EEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCCCce-eecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            35699999999999999999998866542 2233445555544333333345689999999732          222222


Q ss_pred             -cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--HHHH-----HHHhhcCCeEEEe
Q 027607           81 -GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--AKQV-----TFHRKKNLQYYEI  152 (221)
Q Consensus        81 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~-----~~~~~~~~~~~~~  152 (221)
                       .+++.+|++++|+|++++.++++. .|...+..  .+.|+++|+||+|+.+....  .+..     .+....+++++++
T Consensus       252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  328 (436)
T 2hjg_A          252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFM  328 (436)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH--cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEE
Confidence             367889999999999998887765 45555543  48999999999998653321  1221     2223346789999


Q ss_pred             cccCCCChHHHHHHHHHHHhC
Q 027607          153 SAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ||++|.|++++|..+.+.+..
T Consensus       329 SA~tg~~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          329 SALTKKRIHTLMPAIIKASEN  349 (436)
T ss_dssp             CTTTCTTGGGHHHHHHHHHHH
T ss_pred             ecccCCCHHHHHHHHHHHHHH
Confidence            999999999999999887754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.87  E-value=6.2e-22  Score=151.23  Aligned_cols=167  Identities=9%  Similarity=0.042  Sum_probs=103.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc-CCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc-------
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD-------   80 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~-------   80 (221)
                      ...+.++|+|+|++|||||||+++|+.... .....++ +++.......+...+..+.+|||||.........       
T Consensus        18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~-~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~   96 (260)
T 2xtp_A           18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQ-TLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQ   96 (260)
T ss_dssp             ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSC-CCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCC-ceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence            455779999999999999999999887653 2222222 1233333333333456899999999766543222       


Q ss_pred             ----cccccccEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEe-CCCcCCccccH--------HHHHHHhhcC
Q 027607           81 ----GYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGN-KVDVKNRQVKA--------KQVTFHRKKN  146 (221)
Q Consensus        81 ----~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~n-K~D~~~~~~~~--------~~~~~~~~~~  146 (221)
                          .+++.+|++++|+|++..... ..+..++..+.......|.++|+| |+|+.......        +........+
T Consensus        97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~  176 (260)
T 2xtp_A           97 RCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALSKLVAACG  176 (260)
T ss_dssp             HHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTT
T ss_pred             HHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHHHHHHHhC
Confidence                256889999999999852111 112222222221111457776666 99987543221        1112333333


Q ss_pred             Ce---E--EEecccCCCChHHHHHHHHHHHhCCCC
Q 027607          147 LQ---Y--YEISAKSNYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       147 ~~---~--~~~s~~~~~gv~~~~~~l~~~l~~~~~  176 (221)
                      ..   +  +++||++|.|++++|.+|.+.+..++.
T Consensus       177 ~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~~  211 (260)
T 2xtp_A          177 GRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKNG  211 (260)
T ss_dssp             TCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CeEEEecCcccccccHHHHHHHHHHHHHHHHhCCC
Confidence            22   2  789999999999999999999887763

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.87  E-value=4e-21  Score=155.36  Aligned_cols=162  Identities=17%  Similarity=0.102  Sum_probs=112.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee-------eEEE------------ecCcEEEEEEEec
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP-------LDFF------------TNCGKIRFYCWDT   69 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~-------~~~~------------~~~~~~~i~~~D~   69 (221)
                      ...+.++|+++|++|+|||||+++|+...... .......+...       ....            .......+.+|||
T Consensus         4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt   82 (403)
T 3sjy_A            4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSK-KLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA   82 (403)
T ss_dssp             CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCS-SSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCccccc-ccCccccceeeccccccccceecccccccccccccccccceEEEEEC
Confidence            45678999999999999999999977532211 00000000000       0000            0112368999999


Q ss_pred             CCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHHhh-
Q 027607           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK-  144 (221)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~-  144 (221)
                      ||++.+...+..++..+|++++|+|+++..++.....++..+... ...|+++|+||+|+.+.....+..    .+... 
T Consensus        83 PGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~  161 (403)
T 3sjy_A           83 PGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT  161 (403)
T ss_dssp             CCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CCCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence            999999888888899999999999999887666666666555443 346999999999997643222221    12211 


Q ss_pred             --cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          145 --KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       145 --~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                        ..++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          162 WAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             TTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence              2578999999999999999999998654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.87  E-value=7.2e-23  Score=167.13  Aligned_cols=154  Identities=19%  Similarity=0.171  Sum_probs=102.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--------ccccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--------KFGGLRDGYYI   84 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--------~~~~~~~~~~~   84 (221)
                      .++|+++|.+|||||||+|+|+.... ..+.+++|++.+.........+..+.+|||+|.+        .+...+..++.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~-~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~   81 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD   81 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEEC-C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc-eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence            36899999999999999999776544 4567788888888877777777789999999985        45555667789


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC-eEEEecccCCCChHHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEISAKSNYNFEKP  163 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~gv~~~  163 (221)
                      .+|++++|+|++++.+...  .++..+.. ..+.|+++|+||+|+.....  +...+. ..++ .++++||.+|.|+.++
T Consensus        82 ~ad~il~vvD~~~~~~~~d--~~~~~~l~-~~~~pvilv~NK~D~~~~~~--~~~~~~-~lg~~~~~~iSA~~g~gv~~L  155 (436)
T 2hjg_A           82 EADVIIFMVNGREGVTAAD--EEVAKILY-RTKKPVVLAVNKLDNTEMRA--NIYDFY-SLGFGEPYPISGTHGLGLGDL  155 (436)
T ss_dssp             HCSEEEEEEETTTCSCHHH--HHHHHHHT-TCCSCEEEEEECCCC-------CCCSSG-GGSSCCCEECBTTTTBTHHHH
T ss_pred             hCCEEEEEEeCCCCCCHHH--HHHHHHHH-HcCCCEEEEEECccCccchh--hHHHHH-HcCCCCeEEEeCcCCCChHHH
Confidence            9999999999988765443  23333222 24789999999999865321  111222 3344 6899999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      ++++.+.+..
T Consensus       156 ~~~i~~~l~~  165 (436)
T 2hjg_A          156 LDAVAEHFKN  165 (436)
T ss_dssp             HHHHHHTGGG
T ss_pred             HHHHHHhcCc
Confidence            9999998754

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.87  E-value=1.6e-21  Score=154.21  Aligned_cols=114  Identities=13%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~  127 (221)
                      +.+.+.+|||+|++.++.+|..++++++++|+|+|+++          ..++.....|+..+...  ..+.|+++|+||+
T Consensus       191 ~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~  270 (353)
T 1cip_A          191 KDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKK  270 (353)
T ss_dssp             TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECc
Confidence            46889999999999999999999999999999999998          45677777777776553  3689999999999


Q ss_pred             CcCCcc-----------------ccHHHHHHHh-----------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          128 DVKNRQ-----------------VKAKQVTFHR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       128 D~~~~~-----------------~~~~~~~~~~-----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      |+....                 ...++..++.           ..++.++++||++|.|++++|.++++.+.+
T Consensus       271 DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          271 DLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  344 (353)
T ss_dssp             HHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHH
Confidence            984321                 2234444443           356789999999999999999999998764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.86  E-value=5.8e-22  Score=162.64  Aligned_cols=160  Identities=16%  Similarity=0.142  Sum_probs=108.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC----------cccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG----------QEKFGGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g----------~~~~~~~~   79 (221)
                      ....++|+++|.+|+|||||+++|+.... .......+++.......+...+..+.+|||||          ++.+...+
T Consensus       192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~-~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~  270 (456)
T 4dcu_A          192 NEEVIQFCLIGRPNVGKSSLVNAMLGEER-VIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLR  270 (456)
T ss_dssp             CTTCEEEEEECSTTSSHHHHHHHHHTSTT-EEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred             ccccceeEEecCCCCCHHHHHHHHhCCCc-cccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence            45679999999999999999999775432 22344455555543333333345899999999          45555444


Q ss_pred             c-cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc-c-HHHHHHHhh-----cCCeEEE
Q 027607           80 D-GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFHRK-----KNLQYYE  151 (221)
Q Consensus        80 ~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~-~~~~~~~~~-----~~~~~~~  151 (221)
                      . .+++.+|++++|+|+++..... ...|...+..  .++|+++|+||+|+.+... . .+..+.+..     .++++++
T Consensus       271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE--AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH--TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH--cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            3 3678899999999998854322 2334444443  4799999999999875322 1 223333332     2578999


Q ss_pred             ecccCCCChHHHHHHHHHHHhC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      +||++|.|++++|.++.+.+..
T Consensus       348 ~SA~~g~gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKKRIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCTTGGGHHHHHHHHHHH
T ss_pred             EcCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999987744

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.86  E-value=1.9e-21  Score=146.72  Aligned_cols=167  Identities=9%  Similarity=0.011  Sum_probs=103.8

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc-----------ccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE-----------KFG   76 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~-----------~~~   76 (221)
                      ....+.++|+|+|++|||||||+|+|+.........+..+++.......+...+..+.+|||||..           .+.
T Consensus        24 ~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~  103 (239)
T 3lxx_A           24 EPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEII  103 (239)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHH
Confidence            344567999999999999999999988777654444433444444444444345689999999943           233


Q ss_pred             cccccccccccEEEEEEECCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCcccc--------HHHHHHHhhc
Q 027607           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVK--------AKQVTFHRKK  145 (221)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~~~~  145 (221)
                      .....++..++++++|+|++....  ....|+..+...   ....|+++|+||+|+......        .....+....
T Consensus       104 ~~~~~~~~~~~~~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~  181 (239)
T 3lxx_A          104 RCILLTSPGPHALLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIF  181 (239)
T ss_dssp             HHHHHTTTCCSEEEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHH
T ss_pred             HHHHhcCCCCcEEEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHc
Confidence            333444667899999999875332  122333333221   124699999999998543221        2344556666


Q ss_pred             CCeEEEecccCC-----CChHHHHHHHHHHHhCCCC
Q 027607          146 NLQYYEISAKSN-----YNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       146 ~~~~~~~s~~~~-----~gv~~~~~~l~~~l~~~~~  176 (221)
                      +..++.++...+     .++.+++..+.+.+..+..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~~~g  217 (239)
T 3lxx_A          182 GDRYCALNNKATGAEQEAQRAQLLGLIQRVVRENKE  217 (239)
T ss_dssp             SSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CCEEEEEECCCCccccHHHHHHHHHHHHHHHHHcCC
Confidence            777777766533     6899999999888766443

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.86  E-value=1.3e-21  Score=163.97  Aligned_cols=158  Identities=14%  Similarity=0.155  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCc--cCC-----c------ccCCcceeeeeeEEEe-----cCcEEEEEEEecCCcc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----K------YEPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~--~~~-----~------~~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~   73 (221)
                      +-.+|+|+|+.++|||||+++|+...  ...     .      .....|.+.......+     ++..+.+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            35799999999999999999988621  110     0      1112344444333333     3446899999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEE
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~  150 (221)
                      ++...+..+++.+|++++|+|+++..+.+....|.....   .+.|+++|+||+|+.+.........+....++   .++
T Consensus        83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~---~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi  159 (599)
T 3cb4_D           83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME---MDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAV  159 (599)
T ss_dssp             GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCE
T ss_pred             HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEE
Confidence            998888889999999999999999887777777765543   37899999999999765433323344444455   489


Q ss_pred             EecccCCCChHHHHHHHHHHHh
Q 027607          151 EISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ++||++|.|+++++++|.+.+.
T Consensus       160 ~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          160 RCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             EECTTTCTTHHHHHHHHHHHSC
T ss_pred             EeecccCCCchhHHHHHhhcCC
Confidence            9999999999999999998754

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.86  E-value=1.6e-22  Score=167.25  Aligned_cols=157  Identities=17%  Similarity=0.152  Sum_probs=110.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.++|+++|++|+|||||+++|....+.....++.+.+......... .+..+.+|||||++.+..++..++..+|++++
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~-~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL   81 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP-SGEKITFLDTPGHAAFSAMRARGTQVTDIVIL   81 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS-CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC-CCCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence            45789999999999999999988765543333333322222222221 23478999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHH---Hhh--cCCeEEEecccCCCChHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTF---HRK--KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~---~~~--~~~~~~~~s~~~~~gv~~~  163 (221)
                      |+|+++....+....| ..+..  .+.|+++|+||+|+.+...   ..+....   ...  ..++++++||++|.|++++
T Consensus        82 VVDa~dg~~~qt~e~l-~~~~~--~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eL  158 (537)
T 3izy_P           82 VVAADDGVMKQTVESI-QHAKD--AHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMAL  158 (537)
T ss_dssp             ECBSSSCCCHHHHHHH-HHHHT--TTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHH
T ss_pred             EEECCCCccHHHHHHH-HHHHH--cCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhH
Confidence            9999986544433322 22222  3789999999999865322   1121111   111  1357999999999999999


Q ss_pred             HHHHHHHHh
Q 027607          164 FLYLARKLA  172 (221)
Q Consensus       164 ~~~l~~~l~  172 (221)
                      +++|...+.
T Consensus       159 le~I~~l~~  167 (537)
T 3izy_P          159 AEATIALAE  167 (537)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHhhh
Confidence            999998653

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.85  E-value=6.5e-21  Score=148.67  Aligned_cols=116  Identities=13%  Similarity=0.084  Sum_probs=90.2

Q ss_pred             CcEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeC
Q 027607           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNK  126 (221)
Q Consensus        59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK  126 (221)
                      .+++.+++|||+|++.++.+|..|+++++++++|+|++          +..++.....|+..+...  ..+.|+++++||
T Consensus       164 ~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK  243 (327)
T 3ohm_A          164 LQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNK  243 (327)
T ss_dssp             ETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEEC
T ss_pred             eeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEEC
Confidence            35689999999999999999999999999999999765          445555555666665443  258999999999


Q ss_pred             CCcCCcc------------------ccHHHHHH----------HhhcCCeEEEecccCCCChHHHHHHHHHHHhCC
Q 027607          127 VDVKNRQ------------------VKAKQVTF----------HRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       127 ~D~~~~~------------------~~~~~~~~----------~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      +|+....                  ..+++..+          ....++.++++||+++.|++.+|..+.+.+.+.
T Consensus       244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~  319 (327)
T 3ohm_A          244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence            9975422                  22333344          234567789999999999999999999988764

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.85  E-value=2.8e-21  Score=160.34  Aligned_cols=119  Identities=18%  Similarity=0.156  Sum_probs=87.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCc------------------cCC--cccCCcceeeeeeEEEecCcEEEEEEEecC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE------------------FEK--KYEPTIGVEVHPLDFFTNCGKIRFYCWDTA   70 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~------------------~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~   70 (221)
                      .+..+|+|+|++|||||||+++|+...                  ...  ......|.+.......+...+..+.+||||
T Consensus        11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP   90 (528)
T 3tr5_A           11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP   90 (528)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence            356899999999999999999986210                  000  000013344444445555567889999999


Q ss_pred             CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                      |+.++...+..+++.+|++++|+|+++....+....|.. +..  .+.|+++|+||+|+...
T Consensus        91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~-~~~--~~iPiivviNK~Dl~~~  149 (528)
T 3tr5_A           91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEV-CRL--RHTPIMTFINKMDRDTR  149 (528)
T ss_dssp             CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHH-HHT--TTCCEEEEEECTTSCCS
T ss_pred             CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH-HHH--cCCCEEEEEeCCCCccc
Confidence            999999888899999999999999998766666554432 222  37899999999998643

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.85  E-value=4.4e-21  Score=160.61  Aligned_cols=158  Identities=16%  Similarity=0.218  Sum_probs=111.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCc--cCC-----cc------cCCcceeeeeeEEEe-----cCcEEEEEEEecCCcc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGE--FEK-----KY------EPTIGVEVHPLDFFT-----NCGKIRFYCWDTAGQE   73 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~--~~~-----~~------~~~~~~~~~~~~~~~-----~~~~~~i~~~D~~g~~   73 (221)
                      +-.+|+++|+.++|||||+++|+...  ...     .+      ....|.+.......+     ++..+.+.+|||||+.
T Consensus         5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~   84 (600)
T 2ywe_A            5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV   84 (600)
T ss_dssp             GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence            45799999999999999999987521  110     00      011233333222221     3446899999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC---eEE
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL---QYY  150 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---~~~  150 (221)
                      ++...+..+++.+|++++|+|+++....+....|.....   .+.|+++|+||+|+..........++....++   .++
T Consensus        85 dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~---~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi  161 (600)
T 2ywe_A           85 DFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE---QDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAI  161 (600)
T ss_dssp             GGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH---TTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCE
T ss_pred             hHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH---CCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEE
Confidence            998888888999999999999999887777777765543   37899999999999765433223344444455   489


Q ss_pred             EecccCCCChHHHHHHHHHHHh
Q 027607          151 EISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ++||++|.|+++++++|.+.+.
T Consensus       162 ~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          162 LASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEEeecCCCchHHHHHHHHhcc
Confidence            9999999999999999998764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.85  E-value=3.7e-21  Score=158.86  Aligned_cols=152  Identities=19%  Similarity=0.159  Sum_probs=101.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc--C---------------------------CcccCCcceeeeeeEEEecCcE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGK   61 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~   61 (221)
                      .+.+||+++|.+|+|||||+++|+....  .                           .......|.+.......+....
T Consensus        31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~  110 (483)
T 3p26_A           31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR  110 (483)
T ss_dssp             CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC
Confidence            4679999999999999999999875411  0                           0111223555555556666677


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhcc-----HHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--c
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-----VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--V  134 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~  134 (221)
                      ..+.+|||||++++...+..++..+|++++|+|+++..++..     ...+...+.......|+++|+||+|+.+..  .
T Consensus       111 ~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~  190 (483)
T 3p26_A          111 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR  190 (483)
T ss_dssp             CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHH
Confidence            899999999999998888889999999999999998754322     112222222223346799999999987521  1


Q ss_pred             cHH----HHHHHhhc-----CCeEEEecccCCCChHH
Q 027607          135 KAK----QVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       135 ~~~----~~~~~~~~-----~~~~~~~s~~~~~gv~~  162 (221)
                      ..+    ...+....     .++++++||++|.|+.+
T Consensus       191 ~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          191 FEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             HHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            111    11222222     46899999999999975

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.84  E-value=2.3e-21  Score=141.40  Aligned_cols=116  Identities=18%  Similarity=0.198  Sum_probs=87.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCc---ccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccc-
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIH-   85 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~-   85 (221)
                      ..+.++|+|+|++|||||||+++|+.+.+...   ..++.+         .......+.+|||||...+...+..++.. 
T Consensus        45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~  115 (193)
T 2ged_A           45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSA---------ADYDGSGVTLVDFPGHVKLRYKLSDYLKTR  115 (193)
T ss_dssp             -CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEETTCCBSSCCHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCcee---------eeecCCeEEEEECCCCchHHHHHHHHHHhh
Confidence            35779999999999999999999887765431   111111         11134578999999999888877777766 


Q ss_pred             ---ccEEEEEEECC-ChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccc
Q 027607           86 ---GQCAIIMFDVT-ARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        86 ---~d~~i~v~d~~-~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~  134 (221)
                         +|++++|+|++ +..++..+..|+..+....     .+.|+++|+||+|+.+...
T Consensus       116 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A          116 AKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             GGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             cccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence               89999999999 8889988888877765432     4899999999999876443

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.84  E-value=1e-20  Score=149.58  Aligned_cols=114  Identities=15%  Similarity=0.160  Sum_probs=88.7

Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~  127 (221)
                      +.+.+.+|||+|++.++.+|..++++++++|+|||++          +..++.....|+..+...  ..+.|+++|+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            5689999999999999999999999999999999998          677888888888777653  3689999999999


Q ss_pred             CcCCccc-----------------------cHHHHHHHhh----------------cCCeEEEecccCCCChHHHHHHHH
Q 027607          128 DVKNRQV-----------------------KAKQVTFHRK----------------KNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus       128 D~~~~~~-----------------------~~~~~~~~~~----------------~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+.....                       ..++..++..                ..+.++++||+++.|++++|.+++
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9743211                       1233333221                234568999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       341 ~~I~~  345 (354)
T 2xtz_A          341 ETLRR  345 (354)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.84  E-value=1.3e-20  Score=153.86  Aligned_cols=158  Identities=19%  Similarity=0.157  Sum_probs=101.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc------------
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR------------   79 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~------------   79 (221)
                      ..++|+++|++|||||||+|++++... ....+..|++.......+...+..+.+|||+|........            
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~-~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~  257 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV  257 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcc-cccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHH
Confidence            458999999999999999999775543 2334455555554433332233478899999975432221            


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHH-----HHHHhhcCCeEEEe
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQ-----VTFHRKKNLQYYEI  152 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~-----~~~~~~~~~~~~~~  152 (221)
                      ..++..+|++++|+|+++..+.+.. .+...+..  .++|+++|+||+|+.+...  ..+.     ..+....+.+++++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFT  334 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEEC
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH--cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEE
Confidence            1246678999999999887655432 22222222  4899999999999865322  1111     12223346789999


Q ss_pred             cccCCCChHHHHHHHHHHHhC
Q 027607          153 SAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ||++|.|++++|..+.+.+..
T Consensus       335 SA~~g~gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          335 SADKGWNIDRMIDAMNLAYAS  355 (439)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHH
T ss_pred             ECCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999887644

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.84  E-value=2.9e-20  Score=147.45  Aligned_cols=114  Identities=14%  Similarity=0.104  Sum_probs=84.6

Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCC
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKV  127 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~  127 (221)
                      +.+.+.+|||+|++.++..|..++++++++|+|+|+++          ..++.....|+..+...  ..+.|+++|+||+
T Consensus       199 ~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~  278 (362)
T 1zcb_A          199 KNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKT  278 (362)
T ss_dssp             TTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECH
T ss_pred             CCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEECh
Confidence            45789999999999999999999999999999999998          67888888888777653  3689999999999


Q ss_pred             CcCCc------------------cccHHHHHHH--------h---hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          128 DVKNR------------------QVKAKQVTFH--------R---KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       128 D~~~~------------------~~~~~~~~~~--------~---~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      |+...                  ....++..++        .   ..++.++++||+++.|++++|.++.+.+.+
T Consensus       279 DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          279 DLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  353 (362)
T ss_dssp             HHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence            98531                  1122333333        1   345788999999999999999999988754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.84  E-value=1.6e-21  Score=160.02  Aligned_cols=156  Identities=19%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCC--------ccccccccccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG--------QEKFGGLRDGY   82 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g--------~~~~~~~~~~~   82 (221)
                      +...+|+++|.+|||||||+|+|+.... .....++|++...........+..+.+|||||        ++.+......+
T Consensus        21 m~~~~V~lvG~~nvGKSTL~n~l~~~~~-~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~   99 (456)
T 4dcu_A           21 MGKPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA   99 (456)
T ss_dssp             --CCEEEEECSSSSSHHHHHHHHEEEEE-C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHhCCCC-cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence            4567999999999999999999776554 35567888898888888887778999999999        55566666778


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +..+|++++|+|+.+...  ....++..+... .+.|+++|+||+|+....  .....+.......++++||.+|.|+.+
T Consensus       100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~~-~~~pvilV~NK~D~~~~~--~~~~e~~~lg~~~~~~iSA~~g~gv~~  174 (456)
T 4dcu_A          100 MDEADVIIFMVNGREGVT--AADEEVAKILYR-TKKPVVLAVNKLDNTEMR--ANIYDFYSLGFGEPYPISGTHGLGLGD  174 (456)
T ss_dssp             HHHCSEEEEEEESSSCSC--HHHHHHHHHHTT-CCSCEEEEEECC-----------CCSGGGSSSSEEECCTTTCTTHHH
T ss_pred             HhhCCEEEEEEeCCCCCC--hHHHHHHHHHHH-cCCCEEEEEECccchhhh--hhHHHHHHcCCCceEEeecccccchHH
Confidence            899999999999876432  233343333222 489999999999986432  111122222223467999999999999


Q ss_pred             HHHHHHHHHh
Q 027607          163 PFLYLARKLA  172 (221)
Q Consensus       163 ~~~~l~~~l~  172 (221)
                      ++..+.+.+.
T Consensus       175 L~~~i~~~l~  184 (456)
T 4dcu_A          175 LLDAVAEHFK  184 (456)
T ss_dssp             HHHHHHTTGG
T ss_pred             HHHHHHhhcc
Confidence            9999988664

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.84  E-value=9.4e-20  Score=147.55  Aligned_cols=161  Identities=15%  Similarity=0.088  Sum_probs=98.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCc---cCCcccC--CcceeeeeeEEEe-------------c--C----cEEEEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGE---FEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRFYC   66 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~---~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~i~~   66 (221)
                      .+.++|+++|+.++|||||+++|+...   +......  |....+.......             .  +    ....+.+
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   85 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF   85 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence            467999999999999999999976322   2222122  3322222222211             1  1    1378999


Q ss_pred             EecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHH
Q 027607           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFH  142 (221)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~  142 (221)
                      |||||++.+...+...+..+|++++|+|+++..........+..+. .....|+++|+||+|+.+...    ..+...+.
T Consensus        86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~l~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l  164 (408)
T 1s0u_A           86 VDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALE-ILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFV  164 (408)
T ss_dssp             EECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHH-HTTCCCEEEEEECTTSSCTTTTTTHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHH-HcCCCeEEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            9999999887776777788999999999996431111112222222 223468999999999865432    12223333


Q ss_pred             hh---cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          143 RK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       143 ~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ..   .+++++++||++|.|+++++++|.+.+.
T Consensus       165 ~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          165 KGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             hhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            32   3678999999999999999999998654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.83  E-value=8.2e-21  Score=146.06  Aligned_cols=158  Identities=16%  Similarity=0.208  Sum_probs=88.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccC-Ccc-------cCCcceeeeeeEEEecCcEEEEEEEecCCcccc-------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKY-------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-------   75 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~-------   75 (221)
                      ...++|+|+|.+|+|||||+|+++..... ..+       .++.+.+........++..+.+.+|||||....       
T Consensus         6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~   85 (274)
T 3t5d_A            6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW   85 (274)
T ss_dssp             -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred             ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence            35799999999999999999997654432 222       344444554444444445579999999997322       


Q ss_pred             cccc-------ccccc-------------cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc
Q 027607           76 GGLR-------DGYYI-------------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (221)
Q Consensus        76 ~~~~-------~~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  135 (221)
                      ..+.       ..|+.             .+|+++++++.+.......-..++..+..   ++|+++|+||+|+......
T Consensus        86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~---~~pvi~V~nK~D~~~~~e~  162 (274)
T 3t5d_A           86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE---KVNIIPLIAKADTLTPEEC  162 (274)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT---TSCEEEEESSGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc---cCCEEEEEeccCCCCHHHH
Confidence            1111       11122             36788888877653222222233444433   7999999999998643222


Q ss_pred             H----HHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          136 A----KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       136 ~----~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      .    .........++.++.+|+.++.|+.+++.+|.+.+
T Consensus       163 ~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~  202 (274)
T 3t5d_A          163 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRL  202 (274)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCC
Confidence            1    22344456788899999999999999998888743

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=7.2e-20  Score=149.29  Aligned_cols=157  Identities=17%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecC
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNC   59 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~   59 (221)
                      ...+.++|+++|.+++|||||+++|+....  ..                           ......|.+.......+..
T Consensus        13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~   92 (439)
T 3j2k_7           13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET   92 (439)
T ss_pred             CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence            456779999999999999999999854311  00                           0011235555555555666


Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCChhh---hccHHHHHHHHHh-hcCCCC-EEEEEeCCCcCCccc
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---YKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQV  134 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~~~~~~~~~~~~~-~~~~~p-~ivv~nK~D~~~~~~  134 (221)
                      .+..+.+|||||++++...+..++..+|++++|+|+++...   |.....+...+.. ...+.| +++|+||+|+.....
T Consensus        93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~  172 (439)
T 3j2k_7           93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNW  172 (439)
T ss_pred             CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccch
Confidence            66799999999999998888888999999999999998642   2211111111111 112566 899999999854211


Q ss_pred             --------cHHHHHHHhhc------CCeEEEecccCCCChHHHHH
Q 027607          135 --------KAKQVTFHRKK------NLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus       135 --------~~~~~~~~~~~------~~~~~~~s~~~~~gv~~~~~  165 (221)
                              ..+...+....      .++++++||++|.|+.++.+
T Consensus       173 ~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          173 SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence                    11222233333      35799999999999998654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.83  E-value=2.4e-20  Score=157.36  Aligned_cols=154  Identities=19%  Similarity=0.165  Sum_probs=103.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc-----------------------------CCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----------------------------PTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|++|+|||||+++|+.....-...                             ...|++.......+...
T Consensus       164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            4567999999999999999999988553211000                             01344555444455556


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hhccHHHHHHH--HHhhcCCCCEEEEEeCCCcCCcc--
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYKNVPTWHRD--LCRVCENIPIVLCGNKVDVKNRQ--  133 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~--~~~~~~~~p~ivv~nK~D~~~~~--  133 (221)
                      ...+.+|||||++.+...+..++..+|++++|+|+++..   ++.....+...  +.......|+++|+||+|+.+..  
T Consensus       244 ~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~  323 (611)
T 3izq_1          244 RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQ  323 (611)
T ss_dssp             SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHH
T ss_pred             CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHH
Confidence            678999999999999888888899999999999999753   22111122222  22222234599999999987521  


Q ss_pred             c----cHHHHHHHhhc-----CCeEEEecccCCCChHHH
Q 027607          134 V----KAKQVTFHRKK-----NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       134 ~----~~~~~~~~~~~-----~~~~~~~s~~~~~gv~~~  163 (221)
                      .    ..+...+....     .++++++||++|.|+.++
T Consensus       324 ~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          324 RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            1    11222222222     468999999999999865

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.83  E-value=3.6e-20  Score=152.58  Aligned_cols=162  Identities=18%  Similarity=0.097  Sum_probs=106.2

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCc----cC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGE----FE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY   82 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~   82 (221)
                      ...++.++|+++|+.++|||||+++|+...    .. .......|.+.......+...+..+.+|||||++.+...+..+
T Consensus        14 ~~~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~   93 (482)
T 1wb1_A           14 HMDFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA   93 (482)
T ss_dssp             CCCCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred             hhcCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence            344678999999999999999999987654    11 0111122222222111111134789999999999888777888


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHHHHhhc----CCeEEEecc
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVTFHRKK----NLQYYEISA  154 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~----~~~~~~~s~  154 (221)
                      +..+|++++|+|+++...-+. ..++..+..  .+.|.++|+||+|+.+....    .+...+....    ..+++++||
T Consensus        94 ~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~--~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA  170 (482)
T 1wb1_A           94 ADIIDLALIVVDAKEGPKTQT-GEHMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA  170 (482)
T ss_dssp             TTSCCEEEEEEETTTCSCHHH-HHHHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred             HhhCCEEEEEEecCCCccHHH-HHHHHHHHH--cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence            899999999999987421111 112222222  37888999999999753221    1222333333    578999999


Q ss_pred             cCCCChHHHHHHHHHHHh
Q 027607          155 KSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       155 ~~~~gv~~~~~~l~~~l~  172 (221)
                      ++|.|+.+++++|.+.+.
T Consensus       171 ~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          171 KTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             TTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhhc
Confidence            999999999999999764

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.83  E-value=1.8e-21  Score=158.73  Aligned_cols=153  Identities=19%  Similarity=0.215  Sum_probs=100.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCcc---------------------------cCCcceeeeeeEEEecCcE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKKY---------------------------EPTIGVEVHPLDFFTNCGK   61 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~   61 (221)
                      .+.++|+++|+.|+|||||+++|+..  .+....                           ....|.+.......+....
T Consensus         4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~   83 (435)
T 1jny_A            4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK   83 (435)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence            46799999999999999999998764  221110                           0022334433333455566


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHH------hhcCCCCEEEEEeCCCcCCcc--
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------RVCENIPIVLCGNKVDVKNRQ--  133 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~------~~~~~~p~ivv~nK~D~~~~~--  133 (221)
                      ..+.+|||||++++...+..++..+|++++|+|+++ .+|+....|.....      ......|+++++||+|+.+..  
T Consensus        84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~  162 (435)
T 1jny_A           84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYD  162 (435)
T ss_dssp             CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTC
T ss_pred             eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCcccc
Confidence            789999999999998888888999999999999998 55654332221111      111234689999999997621  


Q ss_pred             ------ccHHHHHHHhhcC-----CeEEEecccCCCChHHHH
Q 027607          134 ------VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       134 ------~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~~  164 (221)
                            ...+...+....+     ++++++|+++|.|+.+++
T Consensus       163 ~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          163 EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence                  1222334444444     679999999999997654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.83  E-value=5.5e-20  Score=146.23  Aligned_cols=157  Identities=17%  Similarity=0.091  Sum_probs=101.9

Q ss_pred             eE-EEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeee--eEEEecCcEEEEEEEecCCccc---------ccccccc
Q 027607           14 FK-LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHP--LDFFTNCGKIRFYCWDTAGQEK---------FGGLRDG   81 (221)
Q Consensus        14 ~~-i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~D~~g~~~---------~~~~~~~   81 (221)
                      ++ |+++|++|||||||+|+|......  .....+.+...  ..+.+++  ..+.+|||+|.-.         +... ..
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~~--~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~t-l~  253 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQK--VDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVT-LS  253 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCcc--ccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHH-HH
Confidence            45 999999999999999998766542  22233334333  3444444  5789999999622         1111 22


Q ss_pred             ccccccEEEEEEECCChh--hhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccccH---HHHHHHhhc---CCeEEEe
Q 027607           82 YYIHGQCAIIMFDVTARL--TYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKK---NLQYYEI  152 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~---~~~~~~~  152 (221)
                      .+..+|++++|+|++++.  .......|...+.... .+.|+++|+||+|+.......   ....+....   ...++++
T Consensus       254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~  333 (364)
T 2qtf_A          254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI  333 (364)
T ss_dssp             GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            467899999999999876  4555555555554432 578999999999986533211   111122332   3468999


Q ss_pred             cccCCCChHHHHHHHHHHHhCCC
Q 027607          153 SAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      |+++|.|+++++++|.+.+....
T Consensus       334 SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          334 SALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             ECCCCcCHHHHHHHHHHHhcccC
Confidence            99999999999999998765533

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.83  E-value=2.1e-19  Score=145.58  Aligned_cols=163  Identities=15%  Similarity=0.086  Sum_probs=106.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcC---ccCCcccC--CcceeeeeeEEEe-------------c--C----cEEEE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTG---EFEKKYEP--TIGVEVHPLDFFT-------------N--C----GKIRF   64 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~---~~~~~~~~--~~~~~~~~~~~~~-------------~--~----~~~~i   64 (221)
                      ...+.++|+++|+.++|||||+++|+..   .+......  |....+.......             .  +    ....+
T Consensus         6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i   85 (410)
T 1kk1_A            6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV   85 (410)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred             cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence            3456799999999999999999997732   22222222  3322222222211             0  1    13789


Q ss_pred             EEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc----HHHHH
Q 027607           65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK----AKQVT  140 (221)
Q Consensus        65 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~  140 (221)
                      .+|||||++.+...+...+..+|++++|+|+++..........+..+.. ....|+++|+||+|+.+....    .+...
T Consensus        86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~~~iivviNK~Dl~~~~~~~~~~~~i~~  164 (410)
T 1kk1_A           86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKE  164 (410)
T ss_dssp             EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCCCcEEEEEECccCCCHHHHHHHHHHHHH
Confidence            9999999988877666777889999999999965311111122222222 234689999999999764321    12223


Q ss_pred             HHhh---cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          141 FHRK---KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       141 ~~~~---~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +...   ..++++++|+++|.|+++++++|.+.+.
T Consensus       165 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          165 FIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            3332   4678999999999999999999998654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.83  E-value=1.1e-20  Score=147.83  Aligned_cols=118  Identities=13%  Similarity=0.160  Sum_probs=91.5

Q ss_pred             EecCcEEEEEEEecCCccccccccccccccccEEEEEEECC----------ChhhhccHHHHHHHHHhh--cCCCCEEEE
Q 027607           56 FTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVT----------ARLTYKNVPTWHRDLCRV--CENIPIVLC  123 (221)
Q Consensus        56 ~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~~~~--~~~~p~ivv  123 (221)
                      .+..+.+.+++|||+|++.++.+|..|+++++++|+|+|++          +..++.....|+..+...  ..+.|++++
T Consensus       155 ~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv  234 (340)
T 4fid_A          155 DFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIF  234 (340)
T ss_dssp             EEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEE
T ss_pred             EEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEE
Confidence            33445688999999999999999999999999999999998          566777777777776543  268999999


Q ss_pred             EeCCCcCCccc-----------------cHHHHHHHhh---------------------------cCCeEEEecccCCCC
Q 027607          124 GNKVDVKNRQV-----------------KAKQVTFHRK---------------------------KNLQYYEISAKSNYN  159 (221)
Q Consensus       124 ~nK~D~~~~~~-----------------~~~~~~~~~~---------------------------~~~~~~~~s~~~~~g  159 (221)
                      +||+|+..+..                 .+++..++..                           ..+.++++||+++.+
T Consensus       235 ~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~n  314 (340)
T 4fid_A          235 LNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSN  314 (340)
T ss_dssp             EECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHH
T ss_pred             EECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHH
Confidence            99999753211                 1222222211                           246789999999999


Q ss_pred             hHHHHHHHHHHHhC
Q 027607          160 FEKPFLYLARKLAG  173 (221)
Q Consensus       160 v~~~~~~l~~~l~~  173 (221)
                      ++.+|..+.+.+.+
T Consensus       315 v~~vF~~v~~~Il~  328 (340)
T 4fid_A          315 IKRVFMLAVDVIMK  328 (340)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.82  E-value=3.1e-20  Score=149.80  Aligned_cols=158  Identities=13%  Similarity=0.037  Sum_probs=109.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCc-------cCC-------cccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      +.++|+++|+.++|||||+++|+...       +..       ......|.+.......+......+.+|||||++++..
T Consensus         2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~   81 (397)
T 1d2e_A            2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (397)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence            56999999999999999999987631       100       0011334555544455555667899999999998877


Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC-----
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN-----  146 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~-----  146 (221)
                      .+..++..+|++++|+|+++....+... ++..+..  .+.| +++++||+|+.+...     ..+...+....+     
T Consensus        82 ~~~~~~~~aD~~ilVvda~~g~~~qt~e-~l~~~~~--~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~  158 (397)
T 1d2e_A           82 NMITGTAPLDGCILVVAANDGPMPQTRE-HLLLARQ--IGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEE  158 (397)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTT
T ss_pred             HHHhhHhhCCEEEEEEECCCCCCHHHHH-HHHHHHH--cCCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCccc
Confidence            7778889999999999999864333322 2233322  3678 689999999874211     122333444444     


Q ss_pred             CeEEEecccCCCC----------hHHHHHHHHHHHh
Q 027607          147 LQYYEISAKSNYN----------FEKPFLYLARKLA  172 (221)
Q Consensus       147 ~~~~~~s~~~~~g----------v~~~~~~l~~~l~  172 (221)
                      ++++++||++|.|          +.++++.|.+.+.
T Consensus       159 ~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          159 TPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             SCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             CcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            6899999999764          7888888877553

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.82  E-value=2.4e-20  Score=150.97  Aligned_cols=159  Identities=15%  Similarity=0.086  Sum_probs=110.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcC--------ccCCc-------ccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTG--------EFEKK-------YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~--------~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      ..+.++|+++|++|+|||||+++|+..        .+...       .....|.+.......+......+.+|||||+++
T Consensus         8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~   87 (405)
T 2c78_A            8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHAD   87 (405)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGG
T ss_pred             CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHH
Confidence            456799999999999999999998762        11110       011344555555555666667899999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC--
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN--  146 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~--  146 (221)
                      +...+..++..+|++++|+|+++....+ ...++..+...  +.| +++|+||+|+.+...     ..+...+....+  
T Consensus        88 f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~  164 (405)
T 2c78_A           88 YIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV--GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFP  164 (405)
T ss_dssp             GHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT--TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc--CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhccc
Confidence            8877788889999999999998865332 34444444332  678 889999999974211     112233444433  


Q ss_pred             ---CeEEEecccCCCC------------------hHHHHHHHHHHH
Q 027607          147 ---LQYYEISAKSNYN------------------FEKPFLYLARKL  171 (221)
Q Consensus       147 ---~~~~~~s~~~~~g------------------v~~~~~~l~~~l  171 (221)
                         ++++++||++|.|                  +.++++.|.+.+
T Consensus       165 ~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          165 GDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             TTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence               6899999999977                  667777666644

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.82  E-value=1.3e-20  Score=150.00  Aligned_cols=165  Identities=16%  Similarity=0.265  Sum_probs=89.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc-CCccc--------CCcceeeeeeEEEecCcEEEEEEEecCCc-------cc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYE--------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQ-------EK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~-~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~-------~~   74 (221)
                      ...++|+|+|++|+|||||+++|+.... ...+.        ++.+...........+....+.+|||||.       +.
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~  114 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC  114 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence            4568999999999999999999665432 22111        23333332223333444568999999998       55


Q ss_pred             cccccc-------cccccccE-----------EEEEEECCC-hhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           75 FGGLRD-------GYYIHGQC-----------AIIMFDVTA-RLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        75 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      +..++.       .|+..+++           .++||++++ ..++..+. .|+..+   ..+.|+++|+||+|+.....
T Consensus       115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e  191 (361)
T 2qag_A          115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE  191 (361)
T ss_dssp             -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence            555554       44444332           235555544 44555554 333333   35799999999999875332


Q ss_pred             c----HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcc
Q 027607          135 K----AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHF  179 (221)
Q Consensus       135 ~----~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~  179 (221)
                      .    .+...++...+++++++|+++|.+ .+.|.++.+.+....+...
T Consensus       192 v~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip~~v  239 (361)
T 2qag_A          192 RERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIPFSV  239 (361)
T ss_dssp             HHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCSCEE
T ss_pred             HHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCCCCE
Confidence            2    234456666788999999999999 8888888888876655443

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.82  E-value=2.2e-19  Score=150.71  Aligned_cols=156  Identities=21%  Similarity=0.195  Sum_probs=104.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCc----ccCCcceeeeeeEE------------EecCcEEEEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK----YEPTIGVEVHPLDF------------FTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~----~~~~~~~~~~~~~~------------~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+.++|+++|++|+|||||+++|+.......    ...+.+........            .+......+.+|||||++.
T Consensus         3 ~r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~   82 (594)
T 1g7s_A            3 IRSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (594)
T ss_dssp             ECCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence            3568999999999999999999876543221    11233322211100            0001122589999999999


Q ss_pred             cccccccccccccEEEEEEECCC---hhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc--------------H-
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTA---RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK--------------A-  136 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~--------------~-  136 (221)
                      +...+..+++.+|++++|+|+++   +.++..+.    .+..  .+.|+++++||+|+......              . 
T Consensus        83 F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~  156 (594)
T 1g7s_A           83 FTTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ  156 (594)
T ss_dssp             CTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred             HHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence            99999999999999999999998   44444332    2222  37899999999998642110              0 


Q ss_pred             ----------HHHHHHhh---------------cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          137 ----------KQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 ----------~~~~~~~~---------------~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                                +.......               ..++++++||++|.|+++++.+|...+.
T Consensus       157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                      00011111               1247999999999999999999998654

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=1e-19  Score=145.45  Aligned_cols=113  Identities=15%  Similarity=0.120  Sum_probs=91.3

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCC----------hhhhccHHHHHHHHHhh--cCCCCEEEEEeCCC
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA----------RLTYKNVPTWHRDLCRV--CENIPIVLCGNKVD  128 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D  128 (221)
                      .+.+.+|||+|++.++.+|..++++++++|+|||+++          ..+|.....|+..+...  ..+.|+++|+||+|
T Consensus       216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D  295 (402)
T 1azs_C          216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD  295 (402)
T ss_dssp             TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred             CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence            4789999999999999999999999999999999999          88898888898888664  36899999999999


Q ss_pred             cCCccc--------------------------------cHHHHHHH-----hh--------cCCeEEEecccCCCChHHH
Q 027607          129 VKNRQV--------------------------------KAKQVTFH-----RK--------KNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus       129 ~~~~~~--------------------------------~~~~~~~~-----~~--------~~~~~~~~s~~~~~gv~~~  163 (221)
                      +.....                                ..++..++     ..        ..+.++++||+++.|++.+
T Consensus       296 L~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~v  375 (402)
T 1azs_C          296 LLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRV  375 (402)
T ss_dssp             HHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHH
T ss_pred             hhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHH
Confidence            743211                                12222331     11        3566789999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |.++.+.+.+
T Consensus       376 F~~v~~~I~~  385 (402)
T 1azs_C          376 FNDCRDIIQR  385 (402)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.81  E-value=1.1e-20  Score=155.07  Aligned_cols=153  Identities=14%  Similarity=0.178  Sum_probs=105.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +..+|+++|+.++|||||+++|+.+.+.....  .|.+.......+...+..+.+|||||++.+...+...+..+|++++
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~--~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL   80 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEA--GGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQATDIVVL   80 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTB--CCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCccccC--CCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence            56899999999999999999988654432221  1222221112233334578999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHH---HHHhhc--CCeEEEecccCCCChHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQV---TFHRKK--NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~---~~~~~~--~~~~~~~s~~~~~gv~~~  163 (221)
                      |+|+++....+....| .....  .+.|+++++||+|+.+...   ..+..   .+...+  .++++++||++|.|+.++
T Consensus        81 VVda~~g~~~qT~e~l-~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eL  157 (501)
T 1zo1_I           81 VVAADDGVMPQTIEAI-QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDEL  157 (501)
T ss_dssp             EEETTTBSCTTTHHHH-HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTH
T ss_pred             EeecccCccHHHHHHH-HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchh
Confidence            9999885433333222 22222  3789999999999864221   11100   011122  368999999999999999


Q ss_pred             HHHHHH
Q 027607          164 FLYLAR  169 (221)
Q Consensus       164 ~~~l~~  169 (221)
                      +++|..
T Consensus       158 le~I~~  163 (501)
T 1zo1_I          158 LDAILL  163 (501)
T ss_dssp             HHHTTT
T ss_pred             hhhhhh
Confidence            998764

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.81  E-value=1.7e-19  Score=147.17  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=101.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc--CCc----------ccCC-------------------cceeeeeeEEEecC
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EKK----------YEPT-------------------IGVEVHPLDFFTNC   59 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~~----------~~~~-------------------~~~~~~~~~~~~~~   59 (221)
                      .+.++|+++|+.++|||||+++|+.+..  ...          ...+                   .|.+.......+..
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            4569999999999999999999875431  000          0011                   12233322333444


Q ss_pred             cEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc------
Q 027607           60 GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ------  133 (221)
Q Consensus        60 ~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------  133 (221)
                      ....+.+|||||++.+...+..++..+|++++|+|+++....+ ...++..+.. ....|+++|+||+|+.+..      
T Consensus       102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~-~~~~~iIvviNK~Dl~~~~~~~~~~  179 (434)
T 1zun_B          102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASL-LGIKHIVVAINKMDLNGFDERVFES  179 (434)
T ss_dssp             SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHH-TTCCEEEEEEECTTTTTSCHHHHHH
T ss_pred             CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHH-cCCCeEEEEEEcCcCCcccHHHHHH
Confidence            5678999999999998877778899999999999999864322 2333333322 2234699999999997521      


Q ss_pred             ccHHHHHHHhhcC-----CeEEEecccCCCChHHH
Q 027607          134 VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (221)
Q Consensus       134 ~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~  163 (221)
                      ...+...+....+     ++++++||++|.|+.++
T Consensus       180 i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          180 IKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             HHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             HHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            1122334445555     67999999999999874

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.81  E-value=1.8e-19  Score=133.15  Aligned_cols=159  Identities=13%  Similarity=-0.003  Sum_probs=96.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----------cccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----------GGLR   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----------~~~~   79 (221)
                      ..+..+|+++|++|||||||++++++..+...+.++.|.+.......+.+   .+.+|||||....          ....
T Consensus        23 ~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~   99 (210)
T 1pui_A           23 SDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRAL   99 (210)
T ss_dssp             CSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHH
Confidence            34668999999999999999999776554455566777666544444433   4789999997421          1112


Q ss_pred             cccc---ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhhc--CCeEE
Q 027607           80 DGYY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKK--NLQYY  150 (221)
Q Consensus        80 ~~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~--~~~~~  150 (221)
                      ..++   ..++++++++|+++..+.... .....+..  .+.|+++|+||+|+.....    ......+....  .+.++
T Consensus       100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~~~~--~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~  176 (210)
T 1pui_A          100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQ-QMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVE  176 (210)
T ss_dssp             HHHHHHCTTEEEEEEEEETTSCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEE
T ss_pred             HHHHHhhhcccEEEEEEECCCCCchhHH-HHHHHHHH--cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceE
Confidence            2233   468999999999886544221 11111221  3789999999999865321    12223333333  35789


Q ss_pred             EecccCCCChHHHHHHHHHHHhCC
Q 027607          151 EISAKSNYNFEKPFLYLARKLAGD  174 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l~~~  174 (221)
                      ++|++++.|+++++++|.+.+...
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~~~  200 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFSEM  200 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC--
T ss_pred             EEeecCCCCHHHHHHHHHHHHhhc
Confidence            999999999999999998876443

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.81  E-value=1.5e-19  Score=144.18  Aligned_cols=143  Identities=7%  Similarity=-0.040  Sum_probs=103.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      +|+++|++++|||||+++|+          ..+.+.......+......+.+|||||++++.......++.+|++++|+|
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd   92 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP   92 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence            99999999999999999976          22333333334455556679999999999887766777899999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhcCCCCE-EEEEe-CCCcCCccccH----HHHHHHhhc---CCeEEE--ecccC---CCCh
Q 027607           95 VTARLTYKNVPTWHRDLCRVCENIPI-VLCGN-KVDVKNRQVKA----KQVTFHRKK---NLQYYE--ISAKS---NYNF  160 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~n-K~D~~~~~~~~----~~~~~~~~~---~~~~~~--~s~~~---~~gv  160 (221)
                       +. ..+.....++..+...  +.|. ++++| |+|+ +.....    +...+....   .+++++  +||++   |.|+
T Consensus        93 -~~-g~~~qt~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi  167 (370)
T 2elf_A           93 -PQ-GLDAHTGECIIALDLL--GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGV  167 (370)
T ss_dssp             -TT-CCCHHHHHHHHHHHHT--TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTH
T ss_pred             -CC-CCcHHHHHHHHHHHHc--CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCH
Confidence             43 3344444555444332  6777 88899 9999 533211    222333332   368999  99999   9999


Q ss_pred             HHHHHHHHHHHh
Q 027607          161 EKPFLYLARKLA  172 (221)
Q Consensus       161 ~~~~~~l~~~l~  172 (221)
                      +++++.|.+.+.
T Consensus       168 ~~L~~~l~~~~~  179 (370)
T 2elf_A          168 DELKARINEVAE  179 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcc
Confidence            999999988653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.80  E-value=5.2e-20  Score=151.22  Aligned_cols=155  Identities=18%  Similarity=0.208  Sum_probs=90.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc---------------------c------cCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK---------------------Y------EPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~---------------------~------~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|+.++|||||+++|+.  +.+...                     .      ....|.|.......+...
T Consensus        40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~  119 (467)
T 1r5b_A           40 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  119 (467)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence            35678999999999999999999864  222100                     0      001223322222233334


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCCh---hhhccHHHHHHHHHh-hcCCCC-EEEEEeCCCcCCcc--
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTAR---LTYKNVPTWHRDLCR-VCENIP-IVLCGNKVDVKNRQ--  133 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~~~-~~~~~p-~ivv~nK~D~~~~~--  133 (221)
                      ...+.+|||||++++...+..++..+|++++|+|+++.   .+|+....+...+.. ...+.| +++|+||+|+....  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            57899999999999988888889999999999999987   345433333332221 123676 99999999995421  


Q ss_pred             ------ccHHHHHHHhhc-------CCeEEEecccCCCChHHHH
Q 027607          134 ------VKAKQVTFHRKK-------NLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       134 ------~~~~~~~~~~~~-------~~~~~~~s~~~~~gv~~~~  164 (221)
                            ...+...+....       .++++++|+++|.|+.+++
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                  111233333333       4679999999999998755

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.80  E-value=1.1e-19  Score=141.44  Aligned_cols=159  Identities=12%  Similarity=0.142  Sum_probs=100.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc----cCCcc----------------------eeee------------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIG----------------------VEVH------------   51 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~----~~~~~----------------------~~~~------------   51 (221)
                      ....++|+|+|.+|||||||+|+|++..+.+..    ...++                      ++..            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            345689999999999999999998877653211    11121                      1110            


Q ss_pred             -----------eeEEEe-cCcEEEEEEEecCCccc-------------cccccccccccccEEE-EEEECCChhhhccHH
Q 027607           52 -----------PLDFFT-NCGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAI-IMFDVTARLTYKNVP  105 (221)
Q Consensus        52 -----------~~~~~~-~~~~~~i~~~D~~g~~~-------------~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~  105 (221)
                                 ...+.+ ......+.+|||||...             +..+...++..++.++ +|+|+++..+.....
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~  182 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHH
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHH
Confidence                       000000 01135799999999642             3334556777888766 799998765554433


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHHH---HhhcC-CeEEEecccCCCChHHHHHHHHHH
Q 027607          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVTF---HRKKN-LQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~---~~~~~-~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      .+...+..  .+.|+++|+||+|+.+... ..+....   ....+ .+++++||++|.|+++++++|.+.
T Consensus       183 ~~~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~  250 (299)
T 2aka_B          183 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  250 (299)
T ss_dssp             HHHHHHCT--TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred             HHHHHhCC--CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence            44444432  3789999999999865432 2222111   01112 357889999999999999998873

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.79  E-value=1.4e-19  Score=148.26  Aligned_cols=151  Identities=15%  Similarity=0.171  Sum_probs=100.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCc---------------------------ccCCcceeeeeeEEEecCcE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK---------------------------YEPTIGVEVHPLDFFTNCGK   61 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   61 (221)
                      .+.++|+++|.+++|||||+++|+..  .+...                           .....|.+.......+....
T Consensus         5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~   84 (458)
T 1f60_A            5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK   84 (458)
T ss_dssp             CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC
Confidence            46799999999999999999998753  11100                           00012334333333445566


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChh---hhc---cHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc--
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TYK---NVPTWHRDLCRVCENIP-IVLCGNKVDVKNR--  132 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--  132 (221)
                      ..+.+|||||++.+...+..++..+|++++|+|+++..   +|+   .....+.....  .+.| +++|+||+|+.+.  
T Consensus        85 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~--~~v~~iivviNK~Dl~~~~~  162 (458)
T 1f60_A           85 YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT--LGVRQLIVAVNKMDSVKWDE  162 (458)
T ss_dssp             EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH--TTCCEEEEEEECGGGGTTCH
T ss_pred             ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH--cCCCeEEEEEEccccccCCH
Confidence            78999999999998888888899999999999999763   343   12222222221  2555 8999999998731  


Q ss_pred             c----ccHHHHHHHhhcC-----CeEEEecccCCCChHHH
Q 027607          133 Q----VKAKQVTFHRKKN-----LQYYEISAKSNYNFEKP  163 (221)
Q Consensus       133 ~----~~~~~~~~~~~~~-----~~~~~~s~~~~~gv~~~  163 (221)
                      .    ...+...+....+     ++++++||++|.|+.++
T Consensus       163 ~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          163 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             HHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            1    1112223333333     68999999999998643

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.79  E-value=8.6e-20  Score=153.54  Aligned_cols=151  Identities=22%  Similarity=0.207  Sum_probs=81.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc--CC---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|++|+|||||+++|+....  ..                           ......|+|.......+...
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            45678999999999999999999864210  00                           00113345555555555556


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChh---hh--ccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCc--
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL---TY--KNVPTWHRDLCRVCENIP-IVLCGNKVDVKNR--  132 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~--~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~--  132 (221)
                      +..+.+|||||++.+...+..++..+|++|+|+|+++..   ++  .........+... .+.| +++|+||+|+.+.  
T Consensus       254 ~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgip~iIvviNKiDl~~~~~  332 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGISEIVVSVNKLDLMSWSE  332 (592)
T ss_dssp             -----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSCCCEEEEEECGGGGTTCH
T ss_pred             CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCCCeEEEEEeccccccccH
Confidence            678999999999999888888899999999999998753   22  1111122122222 2555 9999999998652  


Q ss_pred             cc----cHHHHHHH-hhcC-----CeEEEecccCCCChH
Q 027607          133 QV----KAKQVTFH-RKKN-----LQYYEISAKSNYNFE  161 (221)
Q Consensus       133 ~~----~~~~~~~~-~~~~-----~~~~~~s~~~~~gv~  161 (221)
                      ..    ..+...+. ...+     ++++++||++|.|+.
T Consensus       333 ~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          333 DRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            11    11222333 3333     379999999999997

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.79  E-value=4.6e-19  Score=155.65  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=108.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCc-------cCC-------cccCCcceeeeeeEEEecCcEEEEEEEecCCcccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGE-------FEK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF   75 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~-------~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~   75 (221)
                      ..+.++|+++|+.++|||||+++|+...       +..       ....+.|.+.......+......+.+|||||++++
T Consensus       293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF  372 (1289)
T 3avx_A          293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY  372 (1289)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH
T ss_pred             cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH
Confidence            4567999999999999999999987631       000       11234555555544555666678999999999998


Q ss_pred             ccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCCccc-----cHHHHHHHhhcC---
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKNRQV-----KAKQVTFHRKKN---  146 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~~~~-----~~~~~~~~~~~~---  146 (221)
                      ...+..++..+|++++|+|+++....+ ...++..+...  ++| +++|+||+|+.+...     ..+...+....+   
T Consensus       373 ~~~mi~gas~AD~aILVVDAtdGv~~Q-TrEhL~ll~~l--gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~  449 (1289)
T 3avx_A          373 VKNMITGAAQMDGAILVVAATDGPMPQ-TREHILLGRQV--GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPG  449 (1289)
T ss_dssp             HHHHHHTSCCCSEEEEEEETTTCSCTT-HHHHHHHHHHH--TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHhhCCEEEEEEcCCccCcHH-HHHHHHHHHHc--CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccc
Confidence            877788899999999999999875433 33444444333  678 789999999975221     122333444443   


Q ss_pred             --CeEEEecccCC--------CChHHHHHHHHHHH
Q 027607          147 --LQYYEISAKSN--------YNFEKPFLYLARKL  171 (221)
Q Consensus       147 --~~~~~~s~~~~--------~gv~~~~~~l~~~l  171 (221)
                        ++++++|+++|        .|+.++++.|.+.+
T Consensus       450 ~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          450 DDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             TTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             cceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence              68999999999        46888888887754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.78  E-value=1e-18  Score=149.55  Aligned_cols=127  Identities=20%  Similarity=0.178  Sum_probs=87.8

Q ss_pred             CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcC--ccCC--ccc------------CCcceeeeeeEEEecCcEEEE
Q 027607            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTG--EFEK--KYE------------PTIGVEVHPLDFFTNCGKIRF   64 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~i   64 (221)
                      |++..... ..+..+|+|+|++|+|||||+++|+..  ....  ...            ...+.+.......+......+
T Consensus         1 M~~~l~~~-~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i   79 (691)
T 1dar_A            1 MAVKVEYD-LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRI   79 (691)
T ss_dssp             CCTTCCCC-GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEE
T ss_pred             CCccccCc-cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEE
Confidence            55554333 346799999999999999999998842  1100  000            022333333333444456789


Q ss_pred             EEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           65 YCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        65 ~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      .+|||||+..+...+..+++.+|++++|+|+++....+....|... ..  .+.|+++|+||+|+..
T Consensus        80 ~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~-~~--~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           80 NIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQA-EK--YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             EEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HH--TTCCEEEEEECTTSTT
T ss_pred             EEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHH-HH--cCCCEEEEEECCCccc
Confidence            9999999998888888899999999999999988777766655542 22  3899999999999864

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.77  E-value=2.2e-18  Score=146.97  Aligned_cols=117  Identities=19%  Similarity=0.124  Sum_probs=84.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC----------------CcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .+-.+|+|+|++|+|||||+++|+..........                ..+.++......+....+.+.+|||||+..
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~   86 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD   86 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence            3567999999999999999999874322100000                123344444455555678899999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      +...+..+++.+|++++|+|+++....+.. .++..+..  .+.|+++|+||+|+.
T Consensus        87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~--~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           87 FVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER--LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             GHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred             hHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH--ccCCEEEEecCCchh
Confidence            888888889999999999998876443332 33333333  379999999999986

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.77  E-value=4.8e-18  Score=136.84  Aligned_cols=159  Identities=16%  Similarity=0.142  Sum_probs=107.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCc-EEEEEEEecCCccc----cccccccc---cccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG-KIRFYCWDTAGQEK----FGGLRDGY---YIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~D~~g~~~----~~~~~~~~---~~~~   86 (221)
                      .|+++|++|||||||+++++....  .......++.......+... ...+.+||+||...    ...+...+   +..+
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~~~--~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era  236 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRAHP--KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIART  236 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCC--EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcCCc--cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHHHHHHH
Confidence            589999999999999999765432  11222222222222222222 25789999999743    22222223   3468


Q ss_pred             cEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      +.++.++|++ ..++..+..|...+....   ...|.++|+||+|.................++.++.+||+++.|++++
T Consensus       237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL  315 (416)
T 1udx_A          237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPAL  315 (416)
T ss_dssp             SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHH
T ss_pred             HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHH
Confidence            9999999998 555666666666655432   368999999999987652222333444556789999999999999999


Q ss_pred             HHHHHHHHhCCCC
Q 027607          164 FLYLARKLAGDPN  176 (221)
Q Consensus       164 ~~~l~~~l~~~~~  176 (221)
                      +.+|.+.+...+.
T Consensus       316 ~~~i~~~l~~~~~  328 (416)
T 1udx_A          316 KEALHALVRSTPP  328 (416)
T ss_dssp             HHHHHHHHHTSCC
T ss_pred             HHHHHHHHHhccc
Confidence            9999999877654

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.77  E-value=5.6e-19  Score=146.70  Aligned_cols=166  Identities=14%  Similarity=0.077  Sum_probs=104.7

Q ss_pred             CCCCCCCcccCCceEEEEEcCCCCcHHHHHHHHhcCcc-C-------------C------cccCCcceeeeeeEEEecCc
Q 027607            1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF-E-------------K------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus         1 ~~~~~~~~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~-~-------------~------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      |-|.+-.....+.++|+|+|++|+|||||+++|+.... .             .      ......|.+.......+...
T Consensus         1 m~m~~l~~~~~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~   80 (529)
T 2h5e_A            1 MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYH   80 (529)
T ss_dssp             --CCTHHHHHHTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEET
T ss_pred             CchhhhhhhhcCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEEC
Confidence            33443333345679999999999999999999885311 0             0      01123344444444455556


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT  140 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~  140 (221)
                      +..+.+|||||+..+...+..+++.+|++++|+|+++....+. ..++.....  .+.|+++|+||+|+...........
T Consensus        81 ~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~~--~~ipiivviNK~Dl~~~~~~~~~~~  157 (529)
T 2h5e_A           81 DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTRL--RDTPILTFMNKLDRDIRDPMELLDE  157 (529)
T ss_dssp             TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHTT--TTCCEEEEEECTTSCCSCHHHHHHH
T ss_pred             CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHHH--cCCCEEEEEcCcCCccccHHHHHHH
Confidence            6889999999999988888888999999999999988642221 222222222  3789999999999976543222223


Q ss_pred             HHhhcCCe-----EEEecccCCCChHHHHHHHHH
Q 027607          141 FHRKKNLQ-----YYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       141 ~~~~~~~~-----~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +....+..     +...|+.++.|+.+++...+.
T Consensus       158 i~~~l~~~~~~~~~pi~sa~~~~Gv~dl~~~~~~  191 (529)
T 2h5e_A          158 VENELKIGCAPITWPIGCGKLFKGVYHLYKDETY  191 (529)
T ss_dssp             HHHHHCCEEEESEEEESCGGGCCEEEETTTTEEE
T ss_pred             HHHHhCCCccceecceecccCcceeeehhhhhHh
Confidence            33444433     233678888888877655443

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.76  E-value=3.9e-18  Score=130.23  Aligned_cols=118  Identities=13%  Similarity=0.150  Sum_probs=84.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI------   84 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~------   84 (221)
                      .+.++|+++|.+|+|||||+|+|+.+... ......+.+.......+...+..+.+|||||+..+......+++      
T Consensus        34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l  112 (262)
T 3def_A           34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVV-RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFL  112 (262)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHTSCCS-CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCCCCc-ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence            47899999999999999999998876542 22334444444444444445678999999999877665555443      


Q ss_pred             ---cccEEEEEEECCChhhhccH-HHHHHHHHhhcC---CCCEEEEEeCCCcC
Q 027607           85 ---HGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCE---NIPIVLCGNKVDVK  130 (221)
Q Consensus        85 ---~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~---~~p~ivv~nK~D~~  130 (221)
                         .+|++++|++++... +... ..|+..+.....   ..|+++|+||+|+.
T Consensus       113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~  164 (262)
T 3def_A          113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFS  164 (262)
T ss_dssp             TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCC
T ss_pred             hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccC
Confidence               789999999987654 4433 356666655432   35999999999985

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.76  E-value=8.7e-19  Score=136.22  Aligned_cols=167  Identities=17%  Similarity=0.235  Sum_probs=87.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC-ccCCcccC------CcceeeeeeEEEe--cCcEEEEEEEecCCc-------cc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKYEP------TIGVEVHPLDFFT--NCGKIRFYCWDTAGQ-------EK   74 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~-~~~~~~~~------~~~~~~~~~~~~~--~~~~~~i~~~D~~g~-------~~   74 (221)
                      .-.++|+|+|++|||||||+++++.. .+.....+      +.+.......+.+  .+....+.+||++|.       +.
T Consensus        16 ~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~   95 (301)
T 2qnr_A           16 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC   95 (301)
T ss_dssp             --CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence            35699999999999999999996653 33222100      0111111122222  233468999999997       44


Q ss_pred             cccccc-------ccccc-------------ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           75 FGGLRD-------GYYIH-------------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        75 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      +..+..       .++..             +++++++.+.+. .+++....  ..+.......++++|+||.|+.....
T Consensus        96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~--~~l~~l~~~~~iilV~~K~Dl~~~~e  172 (301)
T 2qnr_A           96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDV--AFMKAIHNKVNIVPVIAKADTLTLKE  172 (301)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHH--HHHHHHTTTSCEEEEECCGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHH--HHHHHHHhcCCEEEEEEeCCCCCHHH
Confidence            444333       33322             233444444322 23444331  22333334679999999999865322


Q ss_pred             ----cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCCCCcccc
Q 027607          135 ----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVE  181 (221)
Q Consensus       135 ----~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~  181 (221)
                          ..+...++...++.++++|+++| |++++|..+++.+....++..+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~p~avig  222 (301)
T 2qnr_A          173 RERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASIPFSVVG  222 (301)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTCSEECCC
T ss_pred             HHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCCCceEEC
Confidence                23445677778899999999999 99999999999998766555433

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.75  E-value=3.8e-19  Score=142.91  Aligned_cols=83  Identities=19%  Similarity=0.132  Sum_probs=46.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEE-----------------------ecC-cEEEEEEEec
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF-----------------------TNC-GKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~-~~~~i~~~D~   69 (221)
                      ++|+++|.+|||||||+|+|+...  ....+.+++|.......                       +.+ ..+.+.+|||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            589999999999999999987665  22223333333222211                       121 2468999999


Q ss_pred             CCccc----cccccc---cccccccEEEEEEECCCh
Q 027607           70 AGQEK----FGGLRD---GYYIHGQCAIIMFDVTAR   98 (221)
Q Consensus        70 ~g~~~----~~~~~~---~~~~~~d~~i~v~d~~~~   98 (221)
                      ||...    ...+..   .+++.+|++++|+|+++.
T Consensus        79 pG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99753    222222   457899999999999875

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.74  E-value=7.5e-18  Score=129.25  Aligned_cols=119  Identities=13%  Similarity=0.136  Sum_probs=84.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc---------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG---------   81 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~---------   81 (221)
                      .+.++|+++|.+|+|||||+|+|+.+.+. ......+++.......+...+..+.+|||||...+......         
T Consensus        37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~  115 (270)
T 1h65_A           37 VNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFL  115 (270)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHhCCCcc-cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence            46799999999999999999998866542 23445555655555555556778999999998765543321         


Q ss_pred             ccccccEEEEEEECCChhhhccH-HHHHHHHHhhcCC---CCEEEEEeCCCcCC
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCEN---IPIVLCGNKVDVKN  131 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~---~p~ivv~nK~D~~~  131 (221)
                      ....+|++++|+|++.. ++... ..|+..+......   .|+++|+||+|+..
T Consensus       116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~  168 (270)
T 1h65_A          116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  168 (270)
T ss_dssp             TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence            13468999999998653 34433 3566666554322   69999999999864

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.73  E-value=2.8e-17  Score=140.74  Aligned_cols=109  Identities=13%  Similarity=0.103  Sum_probs=76.3

Q ss_pred             EEEEEecCCccc---cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc---cc-
Q 027607           63 RFYCWDTAGQEK---FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VK-  135 (221)
Q Consensus        63 ~i~~~D~~g~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~---~~-  135 (221)
                      .+.+|||||...   .......++..+|++++|+|+++..+......|...+..  .+.|+++|+||+|+....   .. 
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~--~~~~iiiVlNK~Dl~~~~~~~~ee  252 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG--RGLTVFFLVNAWDQVRESLIDPDD  252 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT--SCCCEEEEEECGGGGGGGCSSTTC
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh--hCCCEEEEEECcccccccccChhh
Confidence            589999999654   234456678899999999999988776665555444432  267899999999986432   00 


Q ss_pred             ----H----HHH-----HHHhh--------cCCeEEEeccc--------------CCCChHHHHHHHHHHHhC
Q 027607          136 ----A----KQV-----TFHRK--------KNLQYYEISAK--------------SNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       136 ----~----~~~-----~~~~~--------~~~~~~~~s~~--------------~~~gv~~~~~~l~~~l~~  173 (221)
                          .    ...     .....        ....++++|++              ++.|+.+++..|.+.+..
T Consensus       253 ~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          253 VEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                0    010     01111        22468999999              999999999999887654

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.73  E-value=2.6e-17  Score=140.88  Aligned_cols=119  Identities=18%  Similarity=0.177  Sum_probs=84.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCCc--------ccC------CcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEKK--------YEP------TIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~~--------~~~------~~~~~~~~~~~~~~~~~~~i~~~D~~g~~   73 (221)
                      ..+..+|+|+|++|+|||||+++|+.  +.....        ...      ..+.+.......+......+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            34578999999999999999999884  222100        000      12333333333444456789999999999


Q ss_pred             ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           74 KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        74 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      .+...+..+++.+|++++|+|+++..+.+....|.. +..  .+.|+++|+||+|+..
T Consensus        87 df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~--~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           87 DFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT--YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             SCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH--TTCCEEEEEECTTSTT
T ss_pred             chHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH--cCCCEEEEEECCCccc
Confidence            888888888999999999999998877666555543 333  3899999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.72  E-value=6.2e-17  Score=126.74  Aligned_cols=113  Identities=10%  Similarity=0.084  Sum_probs=70.8

Q ss_pred             EEEEEEecCCccc-------------cccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCC
Q 027607           62 IRFYCWDTAGQEK-------------FGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKV  127 (221)
Q Consensus        62 ~~i~~~D~~g~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~  127 (221)
                      ..+.+|||||...             +......++..+|++++|+|+.+.. .......+...+..  .+.|+++|+||+
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~--~~~~~i~v~NK~  208 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKL  208 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECT
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCC--CCCcEEEEEcCc
Confidence            4689999999753             2334455688999999999975432 21222233333322  378999999999


Q ss_pred             CcCCccc-cHHHHH-HHhhcCCeEEEeccc---C---CCChHHHHHHHHHHHhCCCC
Q 027607          128 DVKNRQV-KAKQVT-FHRKKNLQYYEISAK---S---NYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       128 D~~~~~~-~~~~~~-~~~~~~~~~~~~s~~---~---~~gv~~~~~~l~~~l~~~~~  176 (221)
                      |+..... ..+... .....+..++++++.   +   +.|+.+++..+...+...+.
T Consensus       209 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          209 DLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             TSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCTT
T ss_pred             ccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCCCc
Confidence            9865432 122221 001122456666554   4   78899999999988776654

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.72  E-value=7.7e-17  Score=138.15  Aligned_cols=118  Identities=17%  Similarity=0.120  Sum_probs=83.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcC--ccCCc--cc------------CCcceeeeeeEEEecC-------cEEEEEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTG--EFEKK--YE------------PTIGVEVHPLDFFTNC-------GKIRFYCW   67 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~--~~~~~--~~------------~~~~~~~~~~~~~~~~-------~~~~i~~~   67 (221)
                      .+..+|+|+|+.|+|||||+++|+..  .+...  ..            ...+.+.......+..       ..+.+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            45689999999999999999998742  11110  00            0123333332223322       23889999


Q ss_pred             ecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           68 DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        68 D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      ||||+.++...+..+++.+|++++|+|+++....+....|.. ...  .+.|+++|+||+|+..
T Consensus        88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~--~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK--YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH--cCCCEEEEEeCCCccc
Confidence            999999988888889999999999999998765555444432 222  3799999999999754

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.69  E-value=1.1e-16  Score=128.95  Aligned_cols=158  Identities=15%  Similarity=0.181  Sum_probs=78.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcc--------cCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--------EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----   77 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----   77 (221)
                      ..-.++|+|+|++|||||||+++|++..+....        .++.+...........+....+++||++|......    
T Consensus        28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~  107 (418)
T 2qag_C           28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC  107 (418)
T ss_dssp             -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------
T ss_pred             cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhh
Confidence            344689999999999999999997765542111        11111111111111122234789999999754311    


Q ss_pred             ---------------------ccccccccccEEEEEEECCCh-hhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           78 ---------------------LRDGYYIHGQCAIIMFDVTAR-LTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        78 ---------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                                           +...++.++++.+++|..... .++.... .|+..+.   .+.|+++|+||+|+.....
T Consensus       108 ~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~e  184 (418)
T 2qag_C          108 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEE  184 (418)
T ss_dssp             CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHH
Confidence                                 123345566655555555433 3455444 4555553   3789999999999864322


Q ss_pred             -c---HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          135 -K---AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       135 -~---~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                       .   ......+...++.++.+|+.++.++.++|..+...
T Consensus       185 v~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          185 CQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             HHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence             1   23445666778999999999999999888777664

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.69  E-value=2.4e-16  Score=131.52  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=87.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCcc--------------------CCcccCCcceeeeeeEEEecCcEEEEEEEecCC
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------------------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG   71 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g   71 (221)
                      +.-+|+|+|+.++|||||..+|+....                    ........|.+.......+.++++.++++||||
T Consensus        30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG  109 (548)
T 3vqt_A           30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG  109 (548)
T ss_dssp             TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred             ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence            567999999999999999999873111                    011122345555666666777788999999999


Q ss_pred             ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      +.+|..-....++-+|++++|+|+...--.+....|......   +.|.++++||+|...
T Consensus       110 HvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~---~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A          110 HQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMR---ATPVMTFVNKMDREA  166 (548)
T ss_dssp             GGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred             cHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHh---CCceEEEEecccchh
Confidence            999999889999999999999999988666666666444332   899999999999754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.69  E-value=2.3e-17  Score=128.34  Aligned_cols=133  Identities=14%  Similarity=0.086  Sum_probs=105.1

Q ss_pred             HHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEECCChh-hhccHH
Q 027607           28 TFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVP  105 (221)
Q Consensus        28 tL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~  105 (221)
                      +|+++++.+.+. ..+.+|+|..+. ..  +..+. .+.+||+  +++++.++..+++++|++++|||++++. ++..+.
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~-~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~  105 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG-SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIID  105 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS-SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHH
T ss_pred             cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC-eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHH
Confidence            688888888887 788899994433 33  22222 6899999  8899999999999999999999999987 688888


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC--CeEEEecccCCCChHHHHHHHH
Q 027607          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN--LQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      .|+..+..  .+.|+++|+||+|+.+.....+...++...+  +.++++||++|.|++++|..+.
T Consensus       106 ~~l~~~~~--~~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          106 KFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             HHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             HHHHHHHH--CCCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            89887654  4899999999999975433233444444445  8999999999999999997764

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.67  E-value=4.3e-17  Score=129.60  Aligned_cols=158  Identities=11%  Similarity=0.116  Sum_probs=92.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc----CCcc----------------------eeee------------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIG----------------------VEVH------------   51 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~----~~~~----------------------~~~~------------   51 (221)
                      ....++|+|+|.+|||||||+|+|++..+.+...    ..++                      +++.            
T Consensus        28 ~~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~  107 (353)
T 2x2e_A           28 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  107 (353)
T ss_dssp             GCCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHH
Confidence            3456899999999999999999988766532211    1111                      0100            


Q ss_pred             -----------eeEEEec-CcEEEEEEEecCCccc-------------ccccccccccccc-EEEEEEECCChhhhccHH
Q 027607           52 -----------PLDFFTN-CGKIRFYCWDTAGQEK-------------FGGLRDGYYIHGQ-CAIIMFDVTARLTYKNVP  105 (221)
Q Consensus        52 -----------~~~~~~~-~~~~~i~~~D~~g~~~-------------~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~  105 (221)
                                 .....+. .....+.+|||||...             +..+...|+...+ ++++|.+++....-....
T Consensus       108 i~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~  187 (353)
T 2x2e_A          108 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  187 (353)
T ss_dssp             HHTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHH
T ss_pred             hcccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHH
Confidence                       0011111 1135799999999632             2334455665555 555566665432222222


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCcCCccc-cHHHHH---HHhhcC-CeEEEecccCCCChHHHHHHHHH
Q 027607          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQV-KAKQVT---FHRKKN-LQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~---~~~~~~-~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      .+...+..  .+.|+++|+||+|+.+... ..+...   .....+ ..++.+|+++|.|+.++++++.+
T Consensus       188 ~i~~~~~~--~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          188 KVAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             HHHHHHCT--TCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             HHHHHhCc--CCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            23333322  3789999999999865432 112111   011122 35678999999999999998876

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.67  E-value=6e-17  Score=129.12  Aligned_cols=153  Identities=12%  Similarity=0.125  Sum_probs=96.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcc--------------------------------------------
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG--------------------------------------------   47 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~--------------------------------------------   47 (221)
                      .-.+|+|+|++|||||||+|+|++..+.+.......                                            
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            344999999999999999999887665332222110                                            


Q ss_pred             --------eeeeeeEEEe-cCcEEEEEEEecCCcccc-------------ccccccccccccEEEEEEECCChhhhccHH
Q 027607           48 --------VEVHPLDFFT-NCGKIRFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMFDVTARLTYKNVP  105 (221)
Q Consensus        48 --------~~~~~~~~~~-~~~~~~i~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~  105 (221)
                              .........+ ......+.+|||||...+             ..+...|+.+++++++|++..+.....  .
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~  190 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--S  190 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--C
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--H
Confidence                    0000011111 112345899999997765             445567789999999999876543332  2


Q ss_pred             HHHHHHHhhc-CCCCEEEEEeCCCcCCccc-cHH-HHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607          106 TWHRDLCRVC-ENIPIVLCGNKVDVKNRQV-KAK-QVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus       106 ~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~-~~~-~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      .|+..+.... .+.|+++|+||+|+.+... ..+ ........+..|+.+++.++.++++.+..
T Consensus       191 ~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~  254 (360)
T 3t34_A          191 DAIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM  254 (360)
T ss_dssp             HHHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred             HHHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence            3333333322 3679999999999865332 222 22334456788999999998888765443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.66  E-value=1.1e-16  Score=127.21  Aligned_cols=103  Identities=8%  Similarity=-0.023  Sum_probs=70.5

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-  139 (221)
                      +..+.+|||||...   .....+..+|++++|+|.......+.+...       ....|.++|+||+|+.+........ 
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~-------~~~~p~ivVlNK~Dl~~~~~~~~~~~  240 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG-------VLELADIVVVNKADGEHHKEARLAAR  240 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT-------SGGGCSEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh-------HhhcCCEEEEECCCCcChhHHHHHHH
Confidence            46789999999432   223345789999999998766544433311       1246999999999986532222111 


Q ss_pred             HHHh----------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          140 TFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 ~~~~----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .+..          .++.+++.+||++|.|+++++.+|.+.+..
T Consensus       241 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          241 ELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             HHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            1111          125689999999999999999999987654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.63  E-value=8.4e-16  Score=114.24  Aligned_cols=152  Identities=14%  Similarity=0.090  Sum_probs=91.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCC----cccCCcceeee--------eeEEEe------------------cCcE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK----KYEPTIGVEVH--------PLDFFT------------------NCGK   61 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~----~~~~~~~~~~~--------~~~~~~------------------~~~~   61 (221)
                      +..+|+|+|.+|||||||+++|+......    ......+.+..        .....+                  ....
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            45799999999999999999987642211    00011110000        000111                  1123


Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccHHHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKAKQV  139 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~~~~  139 (221)
                      ..+.+|||+|+....   ..+....+.+++|+|+++...  ....+...     ...|.++|+||+|+....  ...+..
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~--~~~~~~~~-----~~~~~iiv~NK~Dl~~~~~~~~~~~~  178 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDD--VVEKHPEI-----FRVADLIVINKVALAEAVGADVEKMK  178 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTT--HHHHCHHH-----HHTCSEEEEECGGGHHHHTCCHHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcch--hhhhhhhh-----hhcCCEEEEecccCCcchhhHHHHHH
Confidence            568899999851111   111125678999999876531  11111111     157899999999986431  222333


Q ss_pred             HHHhh--cCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          140 TFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 ~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .....  ...+++++|+++|.|+.+++.+|.+.+..
T Consensus       179 ~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          179 ADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             HHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            33333  25789999999999999999999987644

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.60  E-value=5e-16  Score=123.06  Aligned_cols=102  Identities=9%  Similarity=0.004  Sum_probs=62.4

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH-HH
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-QV  139 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-~~  139 (221)
                      +..+.++||+|....   .......+|.+++|+|++.+...+.+..   .+    -..|.++|+||+|+.+...... ..
T Consensus       166 ~~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i----l~~~~ivVlNK~Dl~~~~~~~~~~~  235 (349)
T 2www_A          166 GYDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI----IEMADLVAVTKSDGDLIVPARRIQA  235 (349)
T ss_dssp             TCSEEEEECCCC--C---HHHHHTTCSEEEEEECCC-------------------CCSCSEEEECCCSGGGHHHHHHHHH
T ss_pred             CCCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH----HhcCCEEEEeeecCCCchhHHHHHH
Confidence            457899999995321   2334678999999999987543222211   11    2568899999999864221111 11


Q ss_pred             HHH---h-------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          140 TFH---R-------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       140 ~~~---~-------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      .+.   .       .+..+++.+|+++|.|+++++.+|.+.+.
T Consensus       236 ~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          236 EYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             HHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            111   0       12457899999999999999999988653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.60  E-value=1.6e-15  Score=132.37  Aligned_cols=117  Identities=16%  Similarity=0.180  Sum_probs=84.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc--CC------ccc------CCcceeee----eeEEE------------ecCc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF--EK------KYE------PTIGVEVH----PLDFF------------TNCG   60 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~--~~------~~~------~~~~~~~~----~~~~~------------~~~~   60 (221)
                      .+..+|+|+|+.|+|||||+++|+....  ..      .+.      ...+.+..    .....            .++.
T Consensus        17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~   96 (842)
T 1n0u_A           17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   96 (842)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence            3567999999999999999999886411  00      000      01112221    11121            1334


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      .+.+.+|||||+.++...+..+++.+|++++|+|+++..+++....|.....   .+.|+++|+||+|+.
T Consensus        97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALG---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TTCEEEEEEECHHHH
T ss_pred             CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cCCCeEEEEECCCcc
Confidence            7899999999999999988999999999999999999888877666654332   378999999999986

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.60  E-value=2.6e-14  Score=112.86  Aligned_cols=82  Identities=18%  Similarity=0.047  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCc---------------EEEEEEEecCCccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEKFG   76 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~i~~~D~~g~~~~~   76 (221)
                      ++|+++|.+|||||||+|+|......  ..+.+++|....  .+.+.+.               ...+.+|||||.....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~--v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGIE--AANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            78999999999999999998876531  111111121111  2223321               1579999999987542


Q ss_pred             ----ccccc---ccccccEEEEEEECCC
Q 027607           77 ----GLRDG---YYIHGQCAIIMFDVTA   97 (221)
Q Consensus        77 ----~~~~~---~~~~~d~~i~v~d~~~   97 (221)
                          .+...   +++.+|++++|+|+++
T Consensus        81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 SKGEGLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence                23333   4789999999999986

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.58  E-value=1e-14  Score=108.76  Aligned_cols=152  Identities=14%  Similarity=0.128  Sum_probs=85.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeee------------eeEEEec-Cc-----------------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH------------PLDFFTN-CG-----------------   60 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~-~~-----------------   60 (221)
                      .+.++|+|+|.+|||||||+++|+.+.+......+.+.+..            .....++ +.                 
T Consensus        36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~  115 (226)
T 2hf9_A           36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLN  115 (226)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSC
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHh
Confidence            35689999999999999999998876544322333332221            1111111 10                 


Q ss_pred             --EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc--ccH
Q 027607           61 --KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ--VKA  136 (221)
Q Consensus        61 --~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~  136 (221)
                        ...+.++|++|.-...   ..+-...+..+.+.++........  .....+     ..|.++|+||+|+....  ...
T Consensus       116 ~~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~~-----~~~~iiv~NK~Dl~~~~~~~~~  185 (226)
T 2hf9_A          116 LDEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGIM-----KTADLIVINKIDLADAVGADIK  185 (226)
T ss_dssp             GGGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHHH-----TTCSEEEEECGGGHHHHTCCHH
T ss_pred             cCCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhHh-----hcCCEEEEeccccCchhHHHHH
Confidence              0134455555521000   011112334456666432211110  001111     57889999999986532  222


Q ss_pred             HHHHHHhh--cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          137 KQVTFHRK--KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 ~~~~~~~~--~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      +.......  .+.+++++|+++|.|++++|.+|.+.+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            33334433  3678999999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.58  E-value=3e-15  Score=118.32  Aligned_cols=102  Identities=11%  Similarity=-0.024  Sum_probs=65.3

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-  139 (221)
                      ++.+.+|||||......   .....+|++++|+|++....++.+....       .+.|.++|+||+|+.+........ 
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~~~-------~~~p~ivv~NK~Dl~~~~~~~~~~~  217 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKKGL-------MEVADLIVINKDDGDNHTNVAIARH  217 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCHHH-------HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHHhh-------hcccCEEEEECCCCCChHHHHHHHH
Confidence            46799999999654322   2467899999999997654433322210       146889999999987532211111 


Q ss_pred             HHH---hh-------cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          140 TFH---RK-------KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       140 ~~~---~~-------~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      .+.   ..       +..+++++|+++|.|+++++.+|.+.+.
T Consensus       218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            111   11       1457899999999999999999988664

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.57  E-value=2.6e-15  Score=125.38  Aligned_cols=118  Identities=18%  Similarity=0.137  Sum_probs=77.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCcceeeeeeEEEecC------------------------------c
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVEVHPLDFFTNC------------------------------G   60 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------------------~   60 (221)
                      ..++|+|+|.+|||||||+|+|++..+.. ......+++... .+....                              +
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~  142 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR  142 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEE-EEECCSSSEEECCC------------------CCCTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEE-EEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence            56899999999999999999988776531 122222221110 000000                              0


Q ss_pred             E----------EEEEEEecCCccc-----------cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC
Q 027607           61 K----------IRFYCWDTAGQEK-----------FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP  119 (221)
Q Consensus        61 ~----------~~i~~~D~~g~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p  119 (221)
                      -          ..+.+|||||...           +......++..+|++++|+|+++.........|+..+...  ..|
T Consensus       143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--~~p  220 (550)
T 2qpt_A          143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--EDK  220 (550)
T ss_dssp             EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--GGG
T ss_pred             ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--CCC
Confidence            0          2588999999764           2233445678899999999998754444455555554432  579


Q ss_pred             EEEEEeCCCcCCc
Q 027607          120 IVLCGNKVDVKNR  132 (221)
Q Consensus       120 ~ivv~nK~D~~~~  132 (221)
                      +++|+||+|+...
T Consensus       221 vilVlNK~Dl~~~  233 (550)
T 2qpt_A          221 IRVVLNKADMVET  233 (550)
T ss_dssp             EEEEEECGGGSCH
T ss_pred             EEEEEECCCccCH
Confidence            9999999998753

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.56  E-value=9.2e-16  Score=130.34  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC--ccCC--c------cc------CCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG--EFEK--K------YE------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~--~~~~--~------~~------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      -||+|+|+.++|||||..+|+..  ....  .      +.      ...|.|.......+.++++.++++||||+.+|..
T Consensus         3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~   82 (638)
T 3j25_A            3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA   82 (638)
T ss_dssp             CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence            47999999999999999998741  1110  0      00      1114555555566677788899999999999998


Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      -....++-+|++++|+|+...-.-+....|......   +.|.++++||+|...
T Consensus        83 Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~lp~i~~INKmDr~~  133 (638)
T 3j25_A           83 EVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKM---GIPTIFFINKIDQNG  133 (638)
T ss_dssp             HHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHH---TCSCEECCEECCSSS
T ss_pred             HHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CCCeEEEEecccccc
Confidence            888899999999999999987655555455443333   789999999999754

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.52  E-value=1.1e-13  Score=119.08  Aligned_cols=117  Identities=20%  Similarity=0.166  Sum_probs=82.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCcc--------CC--------cccCCcceeeeeeEEEecC-------cEEEEEEEe
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------EK--------KYEPTIGVEVHPLDFFTNC-------GKIRFYCWD   68 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--------~~--------~~~~~~~~~~~~~~~~~~~-------~~~~i~~~D   68 (221)
                      +--+|+|+|+.++|||||..+|+....        ..        ......|.|.....+++.+       +++.++++|
T Consensus        12 ~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlID   91 (709)
T 4fn5_A           12 RYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVID   91 (709)
T ss_dssp             GEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEEC
T ss_pred             HCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEe
Confidence            345899999999999999999874211        00        0112234444444343322       368899999


Q ss_pred             cCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      |||+.+|..-....++-+|++++|+|+...-..+....|......   +.|.++++||+|...
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~---~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKY---GVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHc---CCCeEEEEccccccC
Confidence            999999999888899999999999999987666665566555444   899999999999753

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.51  E-value=7.3e-14  Score=110.90  Aligned_cols=82  Identities=15%  Similarity=-0.015  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecC-------------------cEEEEEEEecCCc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNC-------------------GKIRFYCWDTAGQ   72 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------------~~~~i~~~D~~g~   72 (221)
                      ++|+++|.+|||||||+|++.....  .....+++|..+..  ..+..                   ....+.+|||||.
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~~--~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRANA--LAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHHT--TCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCC--cccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            6899999999999999999776431  11111111111111  11111                   2357999999998


Q ss_pred             cccc----cccc---cccccccEEEEEEECCC
Q 027607           73 EKFG----GLRD---GYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        73 ~~~~----~~~~---~~~~~~d~~i~v~d~~~   97 (221)
                      ....    .+..   ..++.+|++++|+|+++
T Consensus        80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred             cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence            6543    2222   24689999999999985

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.50  E-value=5.6e-14  Score=107.03  Aligned_cols=113  Identities=13%  Similarity=0.005  Sum_probs=69.0

Q ss_pred             EEEEEEecCCccccccccc------cccccccEEEEEEECCChhhhccHHHHHHHH-H-hhcCCCCEEEEEeCCCcCCcc
Q 027607           62 IRFYCWDTAGQEKFGGLRD------GYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-C-RVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~-~-~~~~~~p~ivv~nK~D~~~~~  133 (221)
                      +.+.+|||||.........      ..+.. +++++++|+................ . ....+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4789999999865433221      23455 8888899876433222221111111 1 111378999999999986532


Q ss_pred             ccHHHHHH----------------------------Hhhc--CCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          134 VKAKQVTF----------------------------HRKK--NLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       134 ~~~~~~~~----------------------------~~~~--~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      ...+...+                            ....  ..+++++|+++|.|+++++.+|.+.+...+
T Consensus       188 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~~~  259 (262)
T 1yrb_A          188 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCTCG  259 (262)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcccc
Confidence            11111100                            1222  247899999999999999999998775544

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.50  E-value=1.7e-13  Score=117.28  Aligned_cols=165  Identities=13%  Similarity=0.157  Sum_probs=99.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccC--C------------------------------------------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP--T------------------------------------------   45 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~--~------------------------------------------   45 (221)
                      .....+|+|+|..++|||||+|+|++..+.+....  |                                          
T Consensus        48 ~i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~  127 (772)
T 3zvr_A           48 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  127 (772)
T ss_dssp             GGCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence            34567999999999999999999887654221110  0                                          


Q ss_pred             -----cceeeeeeEEEec-CcEEEEEEEecCCcccc-------------cccccccc-ccccEEEEEEECCChhhhccHH
Q 027607           46 -----IGVEVHPLDFFTN-CGKIRFYCWDTAGQEKF-------------GGLRDGYY-IHGQCAIIMFDVTARLTYKNVP  105 (221)
Q Consensus        46 -----~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~-------------~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~  105 (221)
                           .+++.......+. .....+.++||||....             ..+...|+ ..+|++++|+|++.........
T Consensus       128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l  207 (772)
T 3zvr_A          128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL  207 (772)
T ss_dssp             HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred             hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence                 0001111111111 11234789999995431             11223333 4789999999998764443332


Q ss_pred             HHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhh----cC-CeEEEecccCCCChHHHHHHHHHH---HhCCCC
Q 027607          106 TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRK----KN-LQYYEISAKSNYNFEKPFLYLARK---LAGDPN  176 (221)
Q Consensus       106 ~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~gv~~~~~~l~~~---l~~~~~  176 (221)
                      .+...+..  .+.|+++|+||+|+.+.............    .+ ..++.+||++|.|++++++.|.+.   +..+|.
T Consensus       208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ffpe~P~  284 (772)
T 3zvr_A          208 KIAKEVDP--QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFFLSHPS  284 (772)
T ss_dssp             HHHHHHCT--TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHh--cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHHhccCCcc
Confidence            34444433  37899999999998654322111111111    12 356789999999999999999873   444554

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.49  E-value=1.9e-13  Score=108.54  Aligned_cols=115  Identities=12%  Similarity=-0.011  Sum_probs=80.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc----cc---ccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG----LR---DGYYIHG   86 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~----~~---~~~~~~~   86 (221)
                      .+|+++|.||||||||+|+|.+..  ....+.+++|..+....+...+.++.++||||......    ..   ...++.+
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~a  150 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTC  150 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHC
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhc
Confidence            589999999999999999966543  44566777888888777666678899999999643211    11   2236789


Q ss_pred             cEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           87 QCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        87 d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      |++++|+|++++... +.+...+..+.....+.|.++++||.|..
T Consensus       151 d~il~vvD~~~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~  195 (376)
T 4a9a_A          151 NLLFIILDVNKPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKG  195 (376)
T ss_dssp             SEEEEEEETTSHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred             CccccccccCccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence            999999999987432 21222222222223578889999999963

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.36  E-value=1.8e-12  Score=102.11  Aligned_cols=102  Identities=8%  Similarity=0.008  Sum_probs=61.2

Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC-ccccHHH-
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN-RQVKAKQ-  138 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~-~~~~~~~-  138 (221)
                      +..+.++||+|.....   ......+|.+++++|+......+.+.....       ..+.++++||+|+.. ....... 
T Consensus       147 ~~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~-------~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             TCCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHHh-------ccccEEEEEchhccCchhHHHHHH
Confidence            4678999999964321   223468899999999865432211111111       235677789999643 2211111 


Q ss_pred             HHHHh----------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          139 VTFHR----------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       139 ~~~~~----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ..+..          .+..+++.+|++++.|++++++.|.+.+.
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            11111          11356888999999999999999988653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.32  E-value=7.8e-12  Score=97.10  Aligned_cols=95  Identities=16%  Similarity=0.087  Sum_probs=77.0

Q ss_pred             ccccccccccccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHHhhcCC
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNL  147 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~  147 (221)
                      +++++.+.+.+++++|++++|+|++++. ++..+..|+..+..  .++|+++|+||+|+.+...   ..+...++...+.
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~--~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~  143 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY--FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGY  143 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh--CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCC
Confidence            6677788888999999999999999886 88888888886654  4899999999999975431   2334455666788


Q ss_pred             eEEEecccCCCChHHHHHHHH
Q 027607          148 QYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus       148 ~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      +++++||++|.|+++++..+.
T Consensus       144 ~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          144 DVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             EEEECCTTTCTTHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHhhcc
Confidence            999999999999999886643

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.27  E-value=3e-12  Score=102.06  Aligned_cols=88  Identities=17%  Similarity=0.003  Sum_probs=48.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecCc---------------EEEEEEEecCCccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCG---------------KIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~---------------~~~i~~~D~~g~~~   74 (221)
                      ..++|+++|.+|||||||+|++.....  ...+.+++|.....  +.+.+.               ...+.+|||||...
T Consensus        21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~   98 (396)
T 2ohf_A           21 TSLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK   98 (396)
T ss_dssp             SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence            458999999999999999999776543  22233333333222  222221               23599999999765


Q ss_pred             ccc-------ccccccccccEEEEEEECCChhhh
Q 027607           75 FGG-------LRDGYYIHGQCAIIMFDVTARLTY  101 (221)
Q Consensus        75 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s~  101 (221)
                      ...       .+..+++.+|++++|+|+++..++
T Consensus        99 ~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           99 GAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             --------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             ccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            433       334567899999999999865443

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.26  E-value=6.5e-12  Score=90.74  Aligned_cols=103  Identities=6%  Similarity=-0.095  Sum_probs=69.4

Q ss_pred             CCccccccccccccccccEEEEEEECCChhhhccHHHHHHHH----Hhh--cCCCCEEEEEeCC-CcCCccccHHHHHHH
Q 027607           70 AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL----CRV--CENIPIVLCGNKV-DVKNRQVKAKQVTFH  142 (221)
Q Consensus        70 ~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~----~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~  142 (221)
                      +|+..++.+|..|+.++|++|||+|++|...++ .+..+..+    ...  ..+.|++|++||. |++......+.....
T Consensus       110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Ams~~EI~e~L  188 (227)
T 3l82_B          110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHEL  188 (227)
T ss_dssp             -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBCCHHHHHHHT
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCCCHHHHHHHc
Confidence            478899999999999999999999999886654 33333222    222  1478999999995 776654433332111


Q ss_pred             ----hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          143 ----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       143 ----~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                          ....+.+..|||.+|.|+.+.++||...+..
T Consensus       189 ~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~  223 (227)
T 3l82_B          189 HLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  223 (227)
T ss_dssp             TGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTT
T ss_pred             CCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHh
Confidence                1246778999999999999999999886543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.11  E-value=9.7e-11  Score=88.71  Aligned_cols=104  Identities=6%  Similarity=-0.119  Sum_probs=74.9

Q ss_pred             cCCccccccccccccccccEEEEEEECCChhhhccHHHHHH----HHHhh--cCCCCEEEEEeC-CCcCCccccHHHHHH
Q 027607           69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHR----DLCRV--CENIPIVLCGNK-VDVKNRQVKAKQVTF  141 (221)
Q Consensus        69 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~----~~~~~--~~~~p~ivv~nK-~D~~~~~~~~~~~~~  141 (221)
                      .+|+...+.+|..|+.++|++|||+|++|.+.++ .+..+.    .+...  ..+.|++|++|| .|+++.....+....
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~~EI~e~  272 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPCFYLAHE  272 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCHHHHHHH
Confidence            4578899999999999999999999999988765 333222    22222  258999999997 588765444333211


Q ss_pred             H----hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          142 H----RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       142 ~----~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .    ....+.+..|||.+|.|+.+.++||.+.+..
T Consensus       273 L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~  308 (312)
T 3l2o_B          273 LHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVES  308 (312)
T ss_dssp             TTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC
T ss_pred             cCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHh
Confidence            1    1246778999999999999999999997643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.06  E-value=3.4e-11  Score=96.01  Aligned_cols=138  Identities=12%  Similarity=0.054  Sum_probs=80.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCc----cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc----cc---
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGE----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR----DG---   81 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~----~~---   81 (221)
                      ..+|+++|.+|+|||||+|+|+...    .........|+|.....+.+..+   +.++||||........    ..   
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~  238 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLK  238 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHH
Confidence            4589999999999999999977541    12233455667777666665543   7899999964322111    11   


Q ss_pred             cc---ccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-HHHhhcCCeEEEecccC
Q 027607           82 YY---IHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKS  156 (221)
Q Consensus        82 ~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~s~~~  156 (221)
                      .+   ...+.++++++......+..+.. +..+.  ..+.|+++++||.|........... .+....+..+.+.++..
T Consensus       239 ~~~~~~~i~~~~~~l~~~~~~~~g~l~~-l~~l~--~~~~~~~~v~~k~d~~~~~~~~~~~~~~~~~~g~~l~p~~~~~  314 (369)
T 3ec1_A          239 IITPKREIHPRVYQLNEGQTLFFGGLAR-LDYIK--GGRRSFVCYMANELTVHRTKLEKADSLYANQLGELLSPPSKRY  314 (369)
T ss_dssp             HHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEGGGHHHHHHHHBTTTBCSSCGGG
T ss_pred             HHhcccccCceEEEEcCCceEEECCEEE-EEEcc--CCCceEEEEecCCcccccccHHHHHHHHHHhcCCccCCCCchh
Confidence            11   56788999998843211111110 00001  1367999999999976544433333 33344444444444433

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.05  E-value=4.9e-11  Score=95.03  Aligned_cols=121  Identities=12%  Similarity=0.056  Sum_probs=71.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCc-----cCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc----cc-
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGE-----FEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD----GY-   82 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~----~~-   82 (221)
                      ..+|+++|.+|+|||||+|+++...     .........++|.....+.+..+   +.++||||......+..    .. 
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l  236 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL  236 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence            4689999999999999999977642     12234566677777776666544   78999999643322111    11 


Q ss_pred             -----cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH
Q 027607           83 -----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  139 (221)
Q Consensus        83 -----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  139 (221)
                           ....+.++++++......+..+.. +..+.  ..+.|+++++||.|...........
T Consensus       237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l~~-~d~l~--~~~~~~~~v~nk~d~~~~~~~~~~~  295 (368)
T 3h2y_A          237 KLITPTKEIKPMVFQLNEEQTLFFSGLAR-FDYVS--GGRRAFTCHFSNRLTIHRTKLEKAD  295 (368)
T ss_dssp             HHHSCSSCCCCEEEEECTTEEEEETTTEE-EEEEE--SSSEEEEEEECTTSCEEEEEHHHHH
T ss_pred             HHhccccccCceEEEEcCCCEEEEcceEE-EEEec--CCCceEEEEecCccccccccHHHHH
Confidence                 245678888888743211111110 00001  1367999999999986554444443

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.01  E-value=2.2e-09  Score=86.45  Aligned_cols=117  Identities=17%  Similarity=0.243  Sum_probs=59.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcc--cCCcceeeeeeEEEecCcE--EEEEEEecCCcccccc----------
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY--EPTIGVEVHPLDFFTNCGK--IRFYCWDTAGQEKFGG----------   77 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~i~~~D~~g~~~~~~----------   77 (221)
                      ..++++|+|++|||||||+|.+++-.+....  ....+.......+......  ..+.++|++|......          
T Consensus        41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~  120 (427)
T 2qag_B           41 FCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVE  120 (427)
T ss_dssp             CEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHH
Confidence            3467999999999999999996654322111  1122223333333333222  3688999988532100          


Q ss_pred             ----cc----cc---------ccccc--c-EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           78 ----LR----DG---------YYIHG--Q-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        78 ----~~----~~---------~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                          .+    ..         .+..+  | +++++.|+....+..++ .++..+   ..+.|+|+|.||+|....
T Consensus       121 ~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di-eilk~L---~~~~~vI~Vi~KtD~Lt~  191 (427)
T 2qag_B          121 FIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL-VTMKKL---DSKVNIIPIIAKADAISK  191 (427)
T ss_dssp             HHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH-HHHHHT---CSCSEEEEEESCGGGSCH
T ss_pred             HHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH-HHHHHH---hhCCCEEEEEcchhccch
Confidence                00    00         11122  2 35556666543322221 222222   248899999999997543

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.96  E-value=1.4e-09  Score=87.00  Aligned_cols=85  Identities=15%  Similarity=0.034  Sum_probs=54.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeee--EEEecCc---------------EEEEEEEecCCccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPL--DFFTNCG---------------KIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~i~~~D~~g~~~   74 (221)
                      +..+|+++|++|||||||+|+|.+... ....+.++++....  .+.+.+.               ...+.+||+||...
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~-a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~   97 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   97 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc-ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence            357999999999999999999776443 12222333333322  2333321               13689999999643


Q ss_pred             ccc-------ccccccccccEEEEEEECCC
Q 027607           75 FGG-------LRDGYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        75 ~~~-------~~~~~~~~~d~~i~v~d~~~   97 (221)
                      ..+       .....++.+|+++.|+|+.+
T Consensus        98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~  127 (392)
T 1ni3_A           98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  127 (392)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            221       22334678999999999874

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.94  E-value=4.7e-09  Score=80.09  Aligned_cols=23  Identities=35%  Similarity=0.759  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++++|+|++|||||||+|.+++
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999999665

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.93  E-value=2.2e-09  Score=80.24  Aligned_cols=48  Identities=19%  Similarity=0.230  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|+++++.+|++.++|||+++     +|+.....+.+.+++++.
T Consensus       146 LSgGq~QRv~iAral~~~p~llllDEPts~-----LD~~~~~~i~~~l~~l~~  193 (235)
T 3tif_A          146 LSGGQQQRVAIARALANNPPIILADQPTWA-----LDSKTGEKIMQLLKKLNE  193 (235)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998864

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.91  E-value=1.4e-09  Score=82.70  Aligned_cols=48  Identities=33%  Similarity=0.342  Sum_probs=42.2

Q ss_pred             CChHHHHHHHHHHHhC------CCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAG------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....|++++..      +|++.++|||+++     +|+..+..+.+.++++..+
T Consensus       143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~-----LD~~~~~~i~~~l~~l~~~  196 (266)
T 4g1u_C          143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSA-----LDLYHQQHTLRLLRQLTRQ  196 (266)
T ss_dssp             CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSS-----CCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccccCCCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHHHc
Confidence            4556666789999998      9999999999999     9999999999999988643

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.90  E-value=1.7e-09  Score=85.35  Aligned_cols=49  Identities=20%  Similarity=0.205  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-++....|++++..+|++.++|||+++     +|+..+..+.+.+++++.+
T Consensus       164 LSGGqkQRVaIArAL~~~P~lLLlDEPTs~-----LD~~~~~~i~~lL~~l~~~  212 (366)
T 3tui_C          164 LSGGQKQRVAIARALASNPKVLLCDQATSA-----LDPATTRSILELLKDINRR  212 (366)
T ss_dssp             SCHHHHHHHHHHHHTTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            346667778899999999999999999999     9999999999999988643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.90  E-value=4.4e-09  Score=79.57  Aligned_cols=50  Identities=20%  Similarity=0.247  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+++
T Consensus       147 LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g  196 (256)
T 1vpl_A          147 YSKGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQEG  196 (256)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHhCC
Confidence            345566667899999999999999999999     99999999999999886544

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.89  E-value=3.9e-09  Score=86.97  Aligned_cols=152  Identities=13%  Similarity=0.020  Sum_probs=83.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc-----CccCCcccC-----C-----------cceeeeeeEEE-------------
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT-----GEFEKKYEP-----T-----------IGVEVHPLDFF-------------   56 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~-----~~~~~~~~~-----~-----------~~~~~~~~~~~-------------   56 (221)
                      .+...|+|+|.+||||||++++|..     +.-......     .           .+.........             
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            3457899999999999999999772     211100000     0           00111110000             


Q ss_pred             ecCcEEEEEEEecCCcccccc-cccc---c--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCE-EEEEeCCCc
Q 027607           57 TNCGKIRFYCWDTAGQEKFGG-LRDG---Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPI-VLCGNKVDV  129 (221)
Q Consensus        57 ~~~~~~~i~~~D~~g~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~  129 (221)
                      .....+.+.++||||...... ....   +  +..+|.+++|+|+.....   .......+..   ..|+ ++|+||.|.
T Consensus       179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~---~~~~a~~~~~---~~~i~gvVlNK~D~  252 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA---CEAQAKAFKD---KVDVASVIVTKLDG  252 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT---HHHHHHHHHH---HHCCCCEEEECTTS
T ss_pred             HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc---HHHHHHHHHh---hcCceEEEEeCCcc
Confidence            001346789999999653211 1111   1  226899999999987532   1122222222   2574 889999997


Q ss_pred             CCccccHHHHHHHhhcCCe------------------EEEecccCCCC-hHHHHHHHHHH
Q 027607          130 KNRQVKAKQVTFHRKKNLQ------------------YYEISAKSNYN-FEKPFLYLARK  170 (221)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~------------------~~~~s~~~~~g-v~~~~~~l~~~  170 (221)
                      ..+..  .........+.+                  .+.+|+..|.| +..+++++.+.
T Consensus       253 ~~~~g--~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          253 HAKGG--GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CCCCT--HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             ccchH--HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            64321  122222222222                  23378889989 99988888764

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.89  E-value=3.4e-09  Score=78.69  Aligned_cols=50  Identities=22%  Similarity=0.211  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       141 LSgGq~qrv~laral~~~p~lllLDEPt~~-----LD~~~~~~~~~~l~~l~~~g  190 (224)
T 2pcj_A          141 LSGGEQQRVAIARALANEPILLFADEPTGN-----LDSANTKRVMDIFLKINEGG  190 (224)
T ss_dssp             SCHHHHHHHHHHHHTTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHHCC
Confidence            345566667899999999999999999999     99999999999999886554

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.88  E-value=2.3e-09  Score=81.93  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++
T Consensus       144 LSgGqkQRv~iAraL~~~P~lLlLDEPts~-----LD~~~~~~i~~~l~~l~  190 (275)
T 3gfo_A          144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAG-----LDPMGVSEIMKLLVEMQ  190 (275)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHH
Confidence            345666678899999999999999999999     99999999999999886

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.87  E-value=1.2e-08  Score=75.14  Aligned_cols=48  Identities=15%  Similarity=0.119  Sum_probs=42.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+
T Consensus       134 LSgGqkqrv~laraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~  181 (214)
T 1sgw_A          134 LSQGTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEILK  181 (214)
T ss_dssp             SCHHHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     999999999999988764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.86  E-value=9.3e-09  Score=77.92  Aligned_cols=50  Identities=8%  Similarity=0.125  Sum_probs=43.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       154 LSgGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g  203 (257)
T 1g6h_A          154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAKG  203 (257)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHHCC
Confidence            345566667899999999999999999999     99999999999999886654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.86  E-value=9e-09  Score=78.13  Aligned_cols=50  Identities=18%  Similarity=0.194  Sum_probs=43.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       160 LSgGqkQRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g  209 (263)
T 2olj_A          160 LSGGQAQRVAIARALAMEPKIMLFDEPTSA-----LDPEMVGEVLSVMKQLANEG  209 (263)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence            345566667899999999999999999999     99999999999999886554

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.85  E-value=1.5e-08  Score=80.46  Aligned_cols=49  Identities=16%  Similarity=0.289  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+...++++..+
T Consensus       134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~l~~~  182 (381)
T 3rlf_A          134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHKR  182 (381)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCCcC-----CCHHHHHHHHHHHHHHHHh
Confidence            345666678899999999999999999999     9999999999999988643

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.83  E-value=1.2e-08  Score=82.17  Aligned_cols=160  Identities=17%  Similarity=0.165  Sum_probs=83.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCc-c--eeeeeeEEEecCcEEEEEEEecCCccccccccccc-----c
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI-G--VEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY-----Y   83 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~-----~   83 (221)
                      ....++|+|++|||||||+|.+++-.......-.. +  ++....... ......+.+||++|..........+     +
T Consensus        68 ~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q-~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L  146 (413)
T 1tq4_A           68 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLEKMKF  146 (413)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHHHTTG
T ss_pred             CCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc-ccccCCeeehHhhcccchHHHHHHHHHHcCC
Confidence            44689999999999999999966522111111111 1  111111111 1111247889999853221111111     2


Q ss_pred             ccccEEEEEEECCChhhhccHH-HHHHHHHhhcCCCCEEEEEeCCCcC---------CccccHH----HHHHH----hhc
Q 027607           84 IHGQCAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVK---------NRQVKAK----QVTFH----RKK  145 (221)
Q Consensus        84 ~~~d~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~p~ivv~nK~D~~---------~~~~~~~----~~~~~----~~~  145 (221)
                      ...+..++ ++....   ...+ .+...+..  .+.|+++|.||.|+.         +.....+    ....+    ...
T Consensus       147 ~~~~~~~~-lS~G~~---~kqrv~la~aL~~--~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~  220 (413)
T 1tq4_A          147 YEYDFFII-ISATRF---KKNDIDIAKAISM--MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFREN  220 (413)
T ss_dssp             GGCSEEEE-EESSCC---CHHHHHHHHHHHH--TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CccCCeEE-eCCCCc---cHHHHHHHHHHHh--cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            33355444 665421   1111 12222222  278999999999952         1111111    11222    122


Q ss_pred             C---CeEEEecc--cCCCChHHHHHHHHHHHhCCCCCc
Q 027607          146 N---LQYYEISA--KSNYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       146 ~---~~~~~~s~--~~~~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      +   ...+.+|+  ..+.|++++.+.|.+.+..+++..
T Consensus       221 g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~~~~  258 (413)
T 1tq4_A          221 GIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKRHN  258 (413)
T ss_dssp             TCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGHHH
T ss_pred             CCCCCcEEEEecCcCCccCHHHHHHHHHHhCccchhhH
Confidence            2   35788899  556679999999998877766544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.82  E-value=1.6e-08  Score=76.45  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=43.0

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.++
T Consensus       129 LSgGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~  177 (253)
T 2nq2_C          129 LSGGQRQLILIARAIASECKLILLDEPTSA-----LDLANQDIVLSLLIDLAQS  177 (253)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSEEEESSSSTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566667899999999999999999999     9999999999999988654

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.81  E-value=1.7e-08  Score=76.66  Aligned_cols=50  Identities=18%  Similarity=0.184  Sum_probs=43.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       154 LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~~g  203 (262)
T 1b0u_A          154 LSGGQQQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEG  203 (262)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence            345566667899999999999999999999     99999999999999887654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.81  E-value=2.9e-08  Score=78.32  Aligned_cols=49  Identities=20%  Similarity=0.229  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.....+.+.++++..+
T Consensus       146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  194 (355)
T 1z47_A          146 LSGGQQQRVALARALAPRPQVLLFDEPFAA-----IDTQIRRELRTFVRQVHDE  194 (355)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTCC-----SSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566678899999999999999999999     9999999999999987643

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.81  E-value=2.5e-09  Score=80.19  Aligned_cols=48  Identities=27%  Similarity=0.272  Sum_probs=42.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       127 LSgGqkqRv~lAral~~~p~lllLDEPts~-----LD~~~~~~~~~~l~~l~~  174 (240)
T 2onk_A          127 LSGGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQR  174 (240)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566667899999999999999999999     999999999999998754

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.80  E-value=8.5e-09  Score=81.36  Aligned_cols=47  Identities=30%  Similarity=0.321  Sum_probs=40.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      -+|-+.....|+++++.+|++.++|||.++     +|+.........+.++.
T Consensus       139 LSGGq~QRValArAL~~~P~lLLLDEPts~-----LD~~~r~~l~~~l~~~~  185 (359)
T 3fvq_A          139 LSGGQQQRAALARALAPDPELILLDEPFSA-----LDEQLRRQIREDMIAAL  185 (359)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence            345666678899999999999999999999     99999999988776654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.80  E-value=2e-08  Score=75.26  Aligned_cols=50  Identities=16%  Similarity=0.212  Sum_probs=43.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       140 LSgGq~qrv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~~~~~g  189 (240)
T 1ji0_A          140 LSGGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQEG  189 (240)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEcCCccc-----CCHHHHHHHHHHHHHHHHCC
Confidence            345566667899999999999999999999     99999999999999886544

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.79  E-value=1.2e-08  Score=77.64  Aligned_cols=51  Identities=12%  Similarity=0.122  Sum_probs=43.9

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-.|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++++.++
T Consensus       138 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g  188 (266)
T 2yz2_A          138 FLSGGEKRRVAIASVIVHEPDILILDEPLVG-----LDREGKTDLLRIVEKWKTLG  188 (266)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEEcCcccc-----CCHHHHHHHHHHHHHHHHcC
Confidence            3345566667899999999999999999999     99999999999999886544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.78  E-value=3.6e-08  Score=78.03  Aligned_cols=48  Identities=19%  Similarity=0.249  Sum_probs=42.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++.+
T Consensus       134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  181 (362)
T 2it1_A          134 LSGGQQQRVAIARALVKEPEVLLLDEPLSN-----LDALLRLEVRAELKRLQK  181 (362)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESGGGG-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998754

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.78  E-value=1.6e-08  Score=77.44  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=43.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..++
T Consensus       162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~g  211 (279)
T 2ihy_A          162 LSTGEKQRVMIARALMGQPQVLILDEPAAG-----LDFIARESLLSILDSLSDSY  211 (279)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEEeCCccc-----cCHHHHHHHHHHHHHHHHCC
Confidence            345566667899999999999999999999     99999999999999886543

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.77  E-value=9.9e-09  Score=78.76  Aligned_cols=59  Identities=19%  Similarity=0.165  Sum_probs=35.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE   73 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~   73 (221)
                      ...++|+++|.+|||||||+|+++... .....+.+|+|.....+.+..   .+.+|||||..
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~~-~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTSC-CC------------CCEEETT---TEEEEECCCCC
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcCc-eeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            456899999999999999999976443 334555666666554444432   47899999964

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.77  E-value=6.4e-08  Score=76.95  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++..
T Consensus       140 LSGGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  187 (372)
T 1g29_1          140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQR  187 (372)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEECCCCcc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999988754

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.76  E-value=4e-08  Score=78.04  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=43.0

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+.++|.  +.....|++++..+|++.++|||.++     +|+.......+.++++..+
T Consensus       139 ~~~LSGG--q~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~~  190 (372)
T 1v43_A          139 PAQLSGG--QRQRVAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQK  190 (372)
T ss_dssp             TTTCCSS--CHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHH--HHHHHHHHHHHhcCCCEEEEcCCCcc-----CCHHHHHHHHHHHHHHHHh
Confidence            3444444  44457799999999999999999999     9999999999999987643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.76  E-value=4.3e-08  Score=77.52  Aligned_cols=48  Identities=19%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++.+
T Consensus       134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  181 (359)
T 2yyz_A          134 LSGGQQQRVALARALVKQPKVLLFDEPLSN-----LDANLRMIMRAEIKHLQQ  181 (359)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998754

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.74  E-value=2.7e-08  Score=75.52  Aligned_cols=48  Identities=13%  Similarity=0.090  Sum_probs=41.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       129 LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~L~~~~~  176 (263)
T 2pjz_A          129 LSAGQSVLVRTSLALASQPEIVGLDEPFEN-----VDAARRHVISRYIKEYGK  176 (263)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHSCS
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----cCHHHHHHHHHHHHHhcC
Confidence            345566667899999999999999999999     999999999999988754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.74  E-value=1.5e-08  Score=80.75  Aligned_cols=109  Identities=19%  Similarity=0.227  Sum_probs=79.1

Q ss_pred             ccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HH----HHHHhhcC
Q 027607           72 QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQ----VTFHRKKN  146 (221)
Q Consensus        72 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~----~~~~~~~~  146 (221)
                      .+.++.....+++.++++++|+|+++..     ..|...+.....+.|+++|+||+|+.+..... +.    ...+...+
T Consensus        56 ~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g  130 (368)
T 3h2y_A           56 DDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFVGNNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLG  130 (368)
T ss_dssp             CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHSSSSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHhCCCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcC
Confidence            4677888888888999999999999864     34444455545689999999999996544321 11    12345556


Q ss_pred             C---eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607          147 L---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       147 ~---~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      .   .++.+||++|.|++++++.|.+.. ....+.++-.|..+
T Consensus       131 ~~~~~v~~iSA~~g~gi~~L~~~l~~~~-~~~~i~~vG~~nvG  172 (368)
T 3h2y_A          131 LKPEDVFLISAAKGQGIAELADAIEYYR-GGKDVYVVGCTNVG  172 (368)
T ss_dssp             CCCSEEEECCTTTCTTHHHHHHHHHHHH-TTSCEEEEEBTTSS
T ss_pred             CCcccEEEEeCCCCcCHHHHHhhhhhhc-ccceEEEecCCCCC
Confidence            6   799999999999999999987744 44556666665554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.74  E-value=2.3e-08  Score=79.02  Aligned_cols=48  Identities=23%  Similarity=0.290  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++..
T Consensus       141 LSGGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~r~~l~~~l~~l~~  188 (353)
T 1oxx_K          141 LSGAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQS  188 (353)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998754

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.72  E-value=6.3e-09  Score=80.57  Aligned_cols=49  Identities=20%  Similarity=0.277  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++...
T Consensus       191 LSGGqrQRvaiARAL~~~p~iLlLDEPts~-----LD~~~~~~i~~~l~~l~~~  239 (306)
T 3nh6_A          191 LSGGEKQRVAIARTILKAPGIILLDEATSA-----LDTSNERAIQASLAKVCAN  239 (306)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCSSC-----CCHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECCccc-----CCHHHHHHHHHHHHHHcCC
Confidence            346677778899999999999999999999     9999999999999887653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.72  E-value=3.5e-08  Score=75.70  Aligned_cols=100  Identities=12%  Similarity=0.053  Sum_probs=69.6

Q ss_pred             ecCCcc-ccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcC
Q 027607           68 DTAGQE-KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKN  146 (221)
Q Consensus        68 D~~g~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  146 (221)
                      ..||+. .........+..+|+++.|+|+.++.+..+.     .+.....++|.++|+||+|+.+.........+....+
T Consensus         5 w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~-----~l~~~l~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g   79 (282)
T 1puj_A            5 WFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNP-----MIEDILKNKPRIMLLNKADKADAAVTQQWKEHFENQG   79 (282)
T ss_dssp             ----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCH-----HHHHHCSSSCEEEEEECGGGSCHHHHHHHHHHHHTTT
T ss_pred             CCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCH-----HHHHHHCCCCEEEEEECcccCCHHHHHHHHHHHHhcC
Confidence            467764 2333445568899999999999998876541     1112225899999999999986433333445555567


Q ss_pred             CeEEEecccCCCChHHHHHHHHHHHh
Q 027607          147 LQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       147 ~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      .+++.+|+.++.|+.+++..+.+.+.
T Consensus        80 ~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           80 IRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             CCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             CcEEEEECCCcccHHHHHHHHHHHHH
Confidence            89999999999999999988777653

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.71  E-value=7.6e-09  Score=78.58  Aligned_cols=57  Identities=21%  Similarity=0.162  Sum_probs=35.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      ++++++|.+|+|||||+|++..... ....++.|++.....+....   .+.+|||||...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~-~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA-SSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc-cccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            6999999999999999999775443 33455666666554444332   578999999653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.70  E-value=3e-08  Score=78.09  Aligned_cols=48  Identities=23%  Similarity=0.289  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++.+
T Consensus       128 LSgGq~QRvalAraL~~~P~lLLLDEP~s~-----LD~~~~~~l~~~l~~l~~  175 (348)
T 3d31_A          128 LSGGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHK  175 (348)
T ss_dssp             SCHHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHHH
Confidence            345566678899999999999999999999     999999999999998854

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.70  E-value=2.8e-08  Score=74.83  Aligned_cols=50  Identities=22%  Similarity=0.139  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHhCCCC-------CccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPN-------LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~-------~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|+       +.++|||+++     +|+.....+.+.++++.+++
T Consensus       127 LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g  183 (249)
T 2qi9_C          127 LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALSQQG  183 (249)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCccc-----CCHHHHHHHHHHHHHHHhCC
Confidence            34556666789999999999       9999999999     99999999999999886544

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.70  E-value=5.4e-08  Score=73.24  Aligned_cols=48  Identities=13%  Similarity=0.211  Sum_probs=42.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       146 LSgGq~qRv~iAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~  193 (247)
T 2ff7_A          146 LSGGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKICK  193 (247)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHcC
Confidence            345567778899999999999999999999     999999999999998853

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.69  E-value=8e-09  Score=77.95  Aligned_cols=49  Identities=14%  Similarity=0.095  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..++
T Consensus       145 SgGqkQrv~iAraL~~~p~lllLDEPts~-----LD~~~~~~l~~~l~~l~~~g  193 (250)
T 2d2e_A          145 SGGEKKRNEILQLLVLEPTYAVLDETDSG-----LDIDALKVVARGVNAMRGPN  193 (250)
T ss_dssp             ---HHHHHHHHHHHHHCCSEEEEECGGGT-----TCHHHHHHHHHHHHHHCSTT
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCcC-----CCHHHHHHHHHHHHHHHhcC
Confidence            34556667899999999999999999999     99999999999999986554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.68  E-value=4.4e-08  Score=74.60  Aligned_cols=50  Identities=12%  Similarity=0.063  Sum_probs=43.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++++++
T Consensus       165 LSgGq~QRv~iAraL~~~p~lLlLDEPts~-----LD~~~~~~l~~~l~~l~~~g  214 (267)
T 2zu0_C          165 FSGGEKKRNDILQMAVLEPELCILDESDSG-----LDIDALKVVADGVNSLRDGK  214 (267)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHTTCCSS
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHHhcC
Confidence            345566678899999999999999999999     99999999999999886554

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.61  E-value=2.7e-07  Score=70.34  Aligned_cols=49  Identities=20%  Similarity=0.218  Sum_probs=43.1

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~~  204 (271)
T 2ixe_A          156 QLSGGQRQAVALARALIRKPRLLILDNATSA-----LDAGNQLRVQRLLYESPE  204 (271)
T ss_dssp             TSCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHh
Confidence            3445566678899999999999999999999     999999999999998864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.60  E-value=5.3e-08  Score=77.58  Aligned_cols=110  Identities=19%  Similarity=0.208  Sum_probs=77.7

Q ss_pred             CccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH-HHH----HHHhhc
Q 027607           71 GQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA-KQV----TFHRKK  145 (221)
Q Consensus        71 g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~----~~~~~~  145 (221)
                      .++.++.....++..++++++|+|+++..+     .|...+.....+.|+++|+||+|+.+..... ...    ..+...
T Consensus        57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l~~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~  131 (369)
T 3ec1_A           57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFAADNPILLVGNKADLLPRSVKYPKLLRWMRRMAEEL  131 (369)
T ss_dssp             --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHCTTSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHhCCCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHc
Confidence            366788887888889999999999998763     2333333334589999999999997543321 111    234455


Q ss_pred             CC---eEEEecccCCCChHHHHHHHHHHHhCCCCCccccCCCCC
Q 027607          146 NL---QYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA  186 (221)
Q Consensus       146 ~~---~~~~~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~  186 (221)
                      +.   .++.+||++|.|++++++.|.+.. ....+.+.-.|..+
T Consensus       132 g~~~~~v~~iSA~~g~gi~~L~~~I~~~~-~~~~i~~vG~~nvG  174 (369)
T 3ec1_A          132 GLCPVDVCLVSAAKGIGMAKVMEAINRYR-EGGDVYVVGCTNVG  174 (369)
T ss_dssp             TCCCSEEEECBTTTTBTHHHHHHHHHHHH-TTSCEEEECCTTSS
T ss_pred             CCCcccEEEEECCCCCCHHHHHHHHHhhc-ccCcEEEEcCCCCc
Confidence            65   689999999999999999987754 45556666666655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.55  E-value=7.6e-08  Score=80.22  Aligned_cols=47  Identities=11%  Similarity=0.128  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +|-+.....|++++..+|+++++|||+++     +|+..+..+.+.++++..
T Consensus       140 SgGe~Qrv~iA~aL~~~p~illlDEPts~-----LD~~~~~~l~~~l~~l~~  186 (538)
T 3ozx_A          140 SGGGLQRLLVAASLLREADVYIFDQPSSY-----LDVRERMNMAKAIRELLK  186 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHhC
Confidence            45566667899999999999999999999     999999999999998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.54  E-value=1.6e-07  Score=70.16  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHH
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELA  205 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~  205 (221)
                      +-.|-+.....|++++..+|++.++|||+++     +|+.....+.+.+.
T Consensus       127 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          127 NLSGGQKQRVSLARAVYSNADIYLFDDPLSA-----VDAHVGKHIFENVI  171 (237)
T ss_dssp             CCCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----SCHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCEEEEeCcccc-----cCHHHHHHHHHHHH
Confidence            3345566678899999999999999999999     99999999988884

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.51  E-value=5.6e-07  Score=66.92  Aligned_cols=43  Identities=19%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.+
T Consensus       131 LSgGqkqrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l  173 (229)
T 2pze_A          131 LSGGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC  173 (229)
T ss_dssp             SCHHHHHHHHHHHHHHSCCSEEEEESTTTT-----SCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECcccC-----CCHHHHHHHHHHH
Confidence            345566678899999999999999999999     9999999888763

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.50  E-value=3.6e-07  Score=73.94  Aligned_cols=141  Identities=18%  Similarity=0.109  Sum_probs=76.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc-----CccCC-----ccc-----------CCcceeeeeeEEE-------------e
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT-----GEFEK-----KYE-----------PTIGVEVHPLDFF-------------T   57 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~-----~~~~~-----~~~-----------~~~~~~~~~~~~~-------------~   57 (221)
                      +...|+++|++||||||++..|..     +.-..     .+.           ...+...+.....             .
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a  178 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF  178 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence            457899999999999999988653     11100     000           0011111110000             0


Q ss_pred             cCcEEEEEEEecCCcccccc-ccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC
Q 027607           58 NCGKIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN  131 (221)
Q Consensus        58 ~~~~~~i~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~  131 (221)
                      ...+..+.++||+|...... ...     ......|.+++|+|+.....   .......+...  -.+..+|+||.|...
T Consensus       179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~---a~~~a~~f~~~--~~i~gVIlTKlD~~~  253 (443)
T 3dm5_A          179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ---AYNQALAFKEA--TPIGSIIVTKLDGSA  253 (443)
T ss_dssp             HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHHS--CTTEEEEEECCSSCS
T ss_pred             HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh---HHHHHHHHHhh--CCCeEEEEECCCCcc
Confidence            00226788999999533211 100     11235789999999986532   22222333322  345678999999764


Q ss_pred             ccccHHHHHHHhhcCCeEEEecccCCCChH
Q 027607          132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +.  ..........+.++..++.  |++++
T Consensus       254 ~g--G~~ls~~~~~g~PI~fig~--Ge~vd  279 (443)
T 3dm5_A          254 KG--GGALSAVAATGAPIKFIGT--GEKID  279 (443)
T ss_dssp             SH--HHHHHHHHTTCCCEEEEEC--SSSTT
T ss_pred             cc--cHHHHHHHHHCCCEEEEEc--CCChH
Confidence            32  2233444556777766664  66663

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.50  E-value=1.2e-07  Score=71.10  Aligned_cols=47  Identities=13%  Similarity=0.220  Sum_probs=41.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.
T Consensus       140 LSgGq~qrv~lAral~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~~~  186 (243)
T 1mv5_A          140 ISGGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLM  186 (243)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhc
Confidence            345566778899999999999999999999     99999999999999886

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.48  E-value=5e-07  Score=76.23  Aligned_cols=47  Identities=17%  Similarity=0.220  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-++....|++++..+|++.++|||+++     +|+...+.+.+.++++.+
T Consensus       482 SgGq~qr~~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  528 (582)
T 3b5x_A          482 SGGQRQRVAIARALLRDAPVLILDEATSA-----LDTESERAIQAALDELQK  528 (582)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence            45567778899999999999999999999     999999999999988754

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.45  E-value=3e-07  Score=69.66  Aligned_cols=48  Identities=15%  Similarity=0.178  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       156 LSgGqkqRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l~~l~~  203 (260)
T 2ghi_A          156 LSGGERQRIAIARCLLKDPKIVIFDEATSS-----LDSKTEYLFQKAVEDLRK  203 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCCCT-----TCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHhcC
Confidence            345566778899999999999999999999     999999999999998854

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.45  E-value=3.6e-07  Score=77.24  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=41.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +|-+.....|++++..+|+++++|||+++     +|+..+..+.+.+++++
T Consensus       473 SGGe~QRv~iAraL~~~p~lLlLDEPt~~-----LD~~~~~~l~~~l~~l~  518 (607)
T 3bk7_A          473 SGGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM  518 (607)
T ss_dssp             CHHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHH
Confidence            34555567799999999999999999999     99999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.44  E-value=4.4e-07  Score=75.65  Aligned_cols=47  Identities=19%  Similarity=0.260  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +|-+.....|++++..+|+++++|||+.+     +|+.....+.+.+++++.
T Consensus       387 SGGq~QRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~~l~~l~~  433 (538)
T 3ozx_A          387 SGGELQKLYIAATLAKEADLYVLDQPSSY-----LDVEERYIVAKAIKRVTR  433 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHHH
Confidence            35555567799999999999999999999     999999999999998864

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.41  E-value=2.1e-07  Score=75.23  Aligned_cols=91  Identities=12%  Similarity=0.031  Sum_probs=53.6

Q ss_pred             EEEEEEEecCCccc--ccc-cc---ccc--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc
Q 027607           61 KIRFYCWDTAGQEK--FGG-LR---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR  132 (221)
Q Consensus        61 ~~~i~~~D~~g~~~--~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~  132 (221)
                      ...+.++||||...  ... ..   ...  ....+.+++|+|+......   ......+...  -.+..+|+||.|...+
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a---~~~a~~f~~~--~~~~gVIlTKlD~~a~  253 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA---YDLASRFHQA--SPIGSVIITKMDGTAK  253 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG---HHHHHHHHHH--CSSEEEEEECGGGCSC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH---HHHHHHHhcc--cCCcEEEEeccccccc
Confidence            45678999999533  111 11   111  1245899999999865322   2233333332  3567899999997632


Q ss_pred             cccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607          133 QVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                        ...........+.++..++.  |+++
T Consensus       254 --~G~als~~~~~g~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          254 --GGGALSAVVATGATIKFIGT--GEKI  277 (433)
T ss_dssp             --HHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred             --chHHHHHHHHHCCCEEEEEC--CCCh
Confidence              22344555566788777765  6655

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.40  E-value=1e-07  Score=77.25  Aligned_cols=84  Identities=17%  Similarity=0.048  Sum_probs=47.6

Q ss_pred             EEEEEEEecCCcccccc-cc-----ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCC-C-EEEEEeCCCcCCc
Q 027607           61 KIRFYCWDTAGQEKFGG-LR-----DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENI-P-IVLCGNKVDVKNR  132 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~-p-~ivv~nK~D~~~~  132 (221)
                      ...+.++||||...... +.     ...+..+|.+++|+|+....   +......   ...... | ..+|+||.|...+
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~---~~~~~~~---~~~~~~~~i~gvVlnK~D~~~~  253 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ---QAGIQAK---AFKEAVGEIGSIIVTKLDGSAK  253 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG---GHHHHHH---HHHTTSCSCEEEEEECSSSCST
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH---HHHHHHH---HHhhcccCCeEEEEeCCCCccc
Confidence            45789999999643211 10     11123689999999987653   2222222   222345 6 8899999997532


Q ss_pred             cccHHHHHHHhhcCCeEEEe
Q 027607          133 QVKAKQVTFHRKKNLQYYEI  152 (221)
Q Consensus       133 ~~~~~~~~~~~~~~~~~~~~  152 (221)
                      .  ..........+.++..+
T Consensus       254 ~--g~~l~~~~~~~~pi~~i  271 (432)
T 2v3c_C          254 G--GGALSAVAETKAPIKFI  271 (432)
T ss_dssp             T--HHHHHHHHHSSCCEEEE
T ss_pred             h--HHHHHHHHHHCCCEEEe
Confidence            2  22334455556665554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.39  E-value=7.5e-08  Score=81.25  Aligned_cols=46  Identities=9%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +|-+.....|++++..+|+++++|||+.+     +|+.....+.+.+++++
T Consensus       469 SGGqkQRv~iAraL~~~p~lLlLDEPT~g-----LD~~~~~~i~~ll~~l~  514 (608)
T 3j16_B          469 SGGELQRVAIVLALGIPADIYLIDEPSAY-----LDSEQRIICSKVIRRFI  514 (608)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEECCTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHH
Confidence            35555567799999999999999999999     99999999999998875

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.38  E-value=5.1e-07  Score=75.68  Aligned_cols=65  Identities=17%  Similarity=0.040  Sum_probs=39.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCC-cceeeeeeEE--Ee-cCcEEEEEEEecCCccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPT-IGVEVHPLDF--FT-NCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~-~~~~~~~~~~--~~-~~~~~~i~~~D~~g~~~   74 (221)
                      ..+.++|+|+|.+|||||||+|+|++....-....+ .+.+......  .+ ......+.++||||...
T Consensus        35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~  103 (592)
T 1f5n_A           35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD  103 (592)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence            456789999999999999999997765421111211 1222222111  11 12345789999999653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.7e-06  Score=73.14  Aligned_cols=52  Identities=6%  Similarity=0.046  Sum_probs=45.2

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +-+|-+.....|++++..+|+++++|||+++     +|+.....+.+.++++.+++.
T Consensus       221 ~LSgGe~Qrv~iAraL~~~p~llllDEPts~-----LD~~~~~~l~~~l~~l~~~g~  272 (608)
T 3j16_B          221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSY-----LDVKQRLNAAQIIRSLLAPTK  272 (608)
T ss_dssp             TCCHHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHGGGTTTC
T ss_pred             HCCHHHHHHHHHHHHHHhCCCEEEEECcccC-----CCHHHHHHHHHHHHHHHhCCC
Confidence            3345566678899999999999999999999     999999999999999987653

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.38  E-value=7.5e-07  Score=75.18  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+
T Consensus       481 LSgGq~qrl~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  528 (582)
T 3b60_A          481 LSGGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK  528 (582)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhCCCEEEEECcccc-----CCHHHHHHHHHHHHHHhC
Confidence            345677778899999999999999999999     999999999999998764

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.38  E-value=1.8e-07  Score=78.93  Aligned_cols=49  Identities=16%  Similarity=0.165  Sum_probs=43.2

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      +-.|-++....|++++..+|++.++|||+++     +|+...+.+.+.++++..
T Consensus       479 ~LSgGqrQrv~lARal~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  527 (587)
T 3qf4_A          479 NFSGGQKQRLSIARALVKKPKVLILDDCTSS-----VDPITEKRILDGLKRYTK  527 (587)
T ss_dssp             SSCHHHHHHHHHHHHHHTCCSEEEEESCCTT-----SCHHHHHHHHHHHHHHST
T ss_pred             CcCHHHHHHHHHHHHHHcCCCEEEEECCccc-----CCHHHHHHHHHHHHHhCC
Confidence            3346677788999999999999999999999     999999999999988753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.37  E-value=8.7e-07  Score=74.71  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-++....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       478 LSgGq~Qrv~lAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  525 (578)
T 4a82_A          478 LSGGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK  525 (578)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEECcccc-----CCHHHHHHHHHHHHHHcC
Confidence            346677788999999999999999999999     999999999998887754

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.34  E-value=1.8e-06  Score=72.01  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=40.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      +|-+.....|++++..+|++.++|||+.+     +|...+..+.+.+++++
T Consensus       403 SGGe~qrv~lAraL~~~p~lLlLDEPt~~-----LD~~~~~~i~~~l~~l~  448 (538)
T 1yqt_A          403 SGGELQRVAIAATLLRDADIYLLDEPSAY-----LDVEQRLAVSRAIRHLM  448 (538)
T ss_dssp             CHHHHHHHHHHHHHTSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCCccc-----CCHHHHHHHHHHHHHHH
Confidence            34455557799999999999999999999     99999999999999875

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.34  E-value=1.8e-07  Score=66.38  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=37.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchH----------------HHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLA----------------AQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~  211 (221)
                      .+.+..+..|++++..+|++.++|||..+     +++.                ....+.+.++++.+++
T Consensus        85 s~g~~qrv~iAral~~~p~~lllDEPt~~-----Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g  149 (171)
T 4gp7_A           85 ESARKPLIEMAKDYHCFPVAVVFNLPEKV-----CQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREG  149 (171)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECCCHHH-----HHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHT
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEEeCCHHH-----HHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcC
Confidence            45567778899999999999999999998     8887                4456666655554443

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.33  E-value=4e-07  Score=75.99  Aligned_cols=49  Identities=12%  Similarity=0.170  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      .|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.+++
T Consensus       160 SgGekQRv~iAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~g  208 (538)
T 1yqt_A          160 SGGELQRVAIAAALLRNATFYFFDEPSSY-----LDIRQRLNAARAIRRLSEEG  208 (538)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            45566678899999999999999999999     99999999999999886543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.32  E-value=1.4e-06  Score=73.73  Aligned_cols=48  Identities=10%  Similarity=0.227  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++..
T Consensus       492 LSgGq~Qrv~iAral~~~p~illlDEpts~-----LD~~~~~~i~~~l~~~~~  539 (598)
T 3qf4_B          492 LSQGQRQLLAITRAFLANPKILILDEATSN-----VDTKTEKSIQAAMWKLME  539 (598)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEECCCCTT-----CCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHHHcC
Confidence            346677778899999999999999999999     999999999999988764

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.32  E-value=8e-07  Score=81.48  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=41.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-++..-.|+|++++++++.++|||++.     +|.+..+.+.+.++++..
T Consensus      1219 SgGQrQriaiARAllr~~~ILiLDEaTSa-----LD~~tE~~Iq~~l~~~~~ 1265 (1321)
T 4f4c_A         1219 SGGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEKVVQEALDRARE 1265 (1321)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEESCCCS-----TTSHHHHHHHHHHTTTSS
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHcC
Confidence            35577788999999999999999999999     999999999998887654

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.32  E-value=3.2e-06  Score=64.98  Aligned_cols=43  Identities=19%  Similarity=0.192  Sum_probs=37.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      -.|-+.....|++++..+|++.++|||+++     +|+.....+.+.+
T Consensus       160 LSgGq~QRv~lAraL~~~p~lllLDEPts~-----LD~~~~~~i~~~l  202 (290)
T 2bbs_A          160 LSGGQRARISLARAVYKDADLYLLDSPFGY-----LDVLTEKEIFESC  202 (290)
T ss_dssp             CCHHHHHHHHHHHHHHSCCSEEEEESTTTT-----CCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEEECCccc-----CCHHHHHHHHHHH
Confidence            345566667899999999999999999999     9999999888763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.29  E-value=5e-07  Score=76.36  Aligned_cols=49  Identities=14%  Similarity=0.161  Sum_probs=43.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +|-+.....|++++..+|+++++|||+++     +|+.....+.+.++++.+++
T Consensus       230 SGGekQRvaIAraL~~~P~lLlLDEPTs~-----LD~~~~~~l~~~L~~l~~~g  278 (607)
T 3bk7_A          230 SGGELQRVAIAAALLRKAHFYFFDEPSSY-----LDIRQRLKVARVIRRLANEG  278 (607)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccc-----CCHHHHHHHHHHHHHHHhcC
Confidence            45566667899999999999999999999     99999999999999886543

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.27  E-value=1.8e-07  Score=74.81  Aligned_cols=48  Identities=19%  Similarity=0.238  Sum_probs=42.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -+|-+.....|++++..+|++.++|||.++     +|+.......+.++++..
T Consensus       156 LSGGqrQRvalARAL~~~P~lLLLDEPts~-----LD~~~~~~l~~~l~~~~~  203 (390)
T 3gd7_A          156 LSHGHKQLMCLARSVLSKAKILLLDEPSAH-----LDPVTYQIIRRTLKQAFA  203 (390)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCEEEEESHHHH-----SCHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCccC-----CCHHHHHHHHHHHHHHhC
Confidence            356677778899999999999999999999     999999999999987643

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.26  E-value=4.6e-07  Score=83.01  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-++..-.|+|+++.+++++++|||+++     +|...+..+.+.+.++..
T Consensus       555 LSGGQkQRiaiARAl~~~~~IliLDE~tSa-----LD~~te~~i~~~l~~~~~  602 (1321)
T 4f4c_A          555 LSGGQKQRIAIARALVRNPKILLLDEATSA-----LDAESEGIVQQALDKAAK  602 (1321)
T ss_dssp             CCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHccCCCEEEEeccccc-----CCHHHHHHHHHHHHHHhC
Confidence            346688889999999999999999999999     999988888888887754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.24  E-value=6.8e-07  Score=67.79  Aligned_cols=93  Identities=13%  Similarity=0.027  Sum_probs=61.8

Q ss_pred             cCCccc-cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCC
Q 027607           69 TAGQEK-FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL  147 (221)
Q Consensus        69 ~~g~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~  147 (221)
                      .||+.. ........+.++|+++.|+|+.++.+..+..  +. +   . ++|.++|+||+|+.+.........+....+.
T Consensus         4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l-~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~   76 (262)
T 3cnl_A            4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S-RKETIILLNKVDIADEKTTKKWVEFFKKQGK   76 (262)
T ss_dssp             -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T-TSEEEEEEECGGGSCHHHHHHHHHHHHHTTC
T ss_pred             CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c-CCCcEEEEECccCCCHHHHHHHHHHHHHcCC
Confidence            355432 2223455678999999999999987665321  01 1   1 7899999999999865433344445555677


Q ss_pred             eEEEecccCCCChHHHHHHHHH
Q 027607          148 QYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus       148 ~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ++ .+|+.++.|+++++..+..
T Consensus        77 ~v-~iSa~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           77 RV-ITTHKGEPRKVLLKKLSFD   97 (262)
T ss_dssp             CE-EECCTTSCHHHHHHHHCCC
T ss_pred             eE-EEECCCCcCHHHHHHHHHH
Confidence            88 9999999999988766543

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.23  E-value=1.9e-06  Score=72.97  Aligned_cols=21  Identities=19%  Similarity=0.495  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|+|+|++|||||||++.+.+
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHS
T ss_pred             eEEEECCCCChHHHHHHHHhC
Confidence            499999999999999998654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.18  E-value=6.7e-07  Score=69.96  Aligned_cols=90  Identities=13%  Similarity=0.059  Sum_probs=50.1

Q ss_pred             EEEEEecCCcccccccc-ccc-----cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH
Q 027607           63 RFYCWDTAGQEKFGGLR-DGY-----YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA  136 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~-~~~-----~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~  136 (221)
                      .+.++|++|........ ...     .-..|-.+++.|+....   ++......+...  .....+++||.|....  ..
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~---~~~~~~~~~~~~--~~it~iilTKlD~~a~--~G  285 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN---AIVEQARQFNEA--VKIDGIILTKLDADAR--GG  285 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT---HHHHHHHHHHHH--SCCCEEEEECGGGCSC--CH
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH---HHHHHHHHHHHh--cCCCEEEEeCcCCccc--hh
Confidence            45678999964322211 110     12367888999976552   222333333322  2344788899996322  33


Q ss_pred             HHHHHHhhcCCeEEEecccCCCChH
Q 027607          137 KQVTFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus       137 ~~~~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      .........+.++..++  +|++++
T Consensus       286 ~~l~~~~~~~~pi~~i~--~Ge~v~  308 (328)
T 3e70_C          286 AALSISYVIDAPILFVG--VGQGYD  308 (328)
T ss_dssp             HHHHHHHHHTCCEEEEE--CSSSTT
T ss_pred             HHHHHHHHHCCCEEEEe--CCCCcc
Confidence            34556666677777766  566663

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.17  E-value=2.5e-06  Score=73.25  Aligned_cols=52  Identities=13%  Similarity=0.128  Sum_probs=44.4

Q ss_pred             CCCChHHHHHHHHHHHhCCCC--CccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPN--LHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~--~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      +-+|-+.....|++++..+|+  ++++|||+++     +|+.....+.+.+++++.++.
T Consensus       202 ~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsg-----LD~~~~~~l~~~l~~l~~~g~  255 (670)
T 3ux8_A          202 TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIG-----LHQRDNDRLIATLKSMRDLGN  255 (670)
T ss_dssp             GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTT-----CCGGGHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccC-----CCHHHHHHHHHHHHHHHHcCC
Confidence            334566667889999999988  9999999999     999999999999998876543

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.16  E-value=2.9e-06  Score=65.47  Aligned_cols=92  Identities=12%  Similarity=0.069  Sum_probs=53.9

Q ss_pred             EEEEEEEecCCccc--cc-cccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCC
Q 027607           61 KIRFYCWDTAGQEK--FG-GLRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN  131 (221)
Q Consensus        61 ~~~i~~~D~~g~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  131 (221)
                      .+.+.++||||...  .. .+..     .....+|.+++|+|+...   .+.......+..   ..+ ..+|+||.|...
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g---~~~~~~~~~~~~---~~~i~gvVlnk~D~~~  253 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG---QKAYDLASKFNQ---ASKIGTIIITKMDGTA  253 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG---GGHHHHHHHHHH---TCTTEEEEEECGGGCT
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch---HHHHHHHHHHHh---hCCCCEEEEeCCCCCc
Confidence            45689999999755  21 1111     123468999999998643   222222222222   456 778999999753


Q ss_pred             ccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607          132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      +  ...........+.++..++  .|+++++
T Consensus       254 ~--~g~~~~~~~~~~~pi~~i~--~Ge~v~d  280 (297)
T 1j8m_F          254 K--GGGALSAVAATGATIKFIG--TGEKIDE  280 (297)
T ss_dssp             T--HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             c--hHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence            2  2233455666677776665  4666643

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.15  E-value=2.1e-06  Score=66.42  Aligned_cols=84  Identities=14%  Similarity=0.103  Sum_probs=56.3

Q ss_pred             ccccccccccccEEEEEEECCChhhh-ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc----cHHHHHHHhhcCCeEE
Q 027607           76 GGLRDGYYIHGQCAIIMFDVTARLTY-KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYY  150 (221)
Q Consensus        76 ~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----~~~~~~~~~~~~~~~~  150 (221)
                      +.+.+..+.++|.+++|+|+.++..- ..+..++....  ..++|.++|+||+|+.+...    ...........+.+++
T Consensus        77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~--~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE--ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH--TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH--HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            34445568899999999999877533 23333332222  24889999999999976533    2334455556678888


Q ss_pred             EecccCCCChH
Q 027607          151 EISAKSNYNFE  161 (221)
Q Consensus       151 ~~s~~~~~gv~  161 (221)
                      .+|+.++.|++
T Consensus       155 ~~sa~~~~g~~  165 (307)
T 1t9h_A          155 LTSSKDQDSLA  165 (307)
T ss_dssp             ECCHHHHTTCT
T ss_pred             EEecCCCCCHH
Confidence            88887776653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.07  E-value=1e-05  Score=74.11  Aligned_cols=48  Identities=21%  Similarity=0.273  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-++....|+++++.+|++.++|||+++     +|....+.+.+.++.+..
T Consensus       527 LSgGq~QriaiARal~~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~~  574 (1284)
T 3g5u_A          527 LSGGQKQRIAIARALVRNPKILLLDEATSA-----LDTESEAVVQAALDKARE  574 (1284)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTCS-----SCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHcC
Confidence            346678888999999999999999999999     999998888888876654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.03  E-value=1.7e-05  Score=72.62  Aligned_cols=47  Identities=19%  Similarity=0.289  Sum_probs=41.5

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .|-++....|++++..+|++.++|||+++     +|....+.+.+.++++..
T Consensus      1173 SgGq~Qrv~iARal~~~p~iLiLDEpTs~-----lD~~~~~~i~~~l~~~~~ 1219 (1284)
T 3g5u_A         1173 SGGQKQRIAIARALVRQPHILLLDEATSA-----LDTESEKVVQEALDKARE 1219 (1284)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSEEEESCSSS-----CCHHHHHHHHHHHHHHSS
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccc-----CCHHHHHHHHHHHHHhCC
Confidence            45577778899999999999999999999     999999999999987643

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.01  E-value=1.6e-07  Score=77.27  Aligned_cols=103  Identities=17%  Similarity=-0.015  Sum_probs=55.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcc--cccccc--------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE--KFGGLR--------   79 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~--~~~~~~--------   79 (221)
                      ....++|+++|.+||||||+.++|....... ..++.+...........+......+||..|.+  +.+..+        
T Consensus        36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~  114 (469)
T 1bif_A           36 TNCPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDV  114 (469)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence            3456899999999999999999966432211 11111111000000011111234577888862  222222        


Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhh
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV  114 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~  114 (221)
                      ..++....+.++|+|+++. .......|+..+...
T Consensus       115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~  148 (469)
T 1bif_A          115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN  148 (469)
T ss_dssp             HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence            3455567888999999987 444455565555443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.96  E-value=2e-05  Score=69.62  Aligned_cols=44  Identities=18%  Similarity=0.111  Sum_probs=39.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHH
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAA  206 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~  206 (221)
                      +|-+.....|++++..+|++.++|||+++     +|+.....+.+.+++
T Consensus       550 SGGqkQRvaLArAL~~~P~lLLLDEPTs~-----LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          550 SGGWKMKLALARAVLRNADILLLDEPTNH-----LDTVNVAWLVNYLNT  593 (986)
T ss_dssp             CHHHHHHHHHHHHHHTTCSEEEEESTTTT-----CCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEECCccC-----CCHHHHHHHHHHHHh
Confidence            45666678899999999999999999999     999999999999987

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.94  E-value=0.00042  Score=55.03  Aligned_cols=51  Identities=10%  Similarity=0.170  Sum_probs=42.4

Q ss_pred             CCCChHHHHHHHHHHHh------CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCC
Q 027607          156 SNYNFEKPFLYLARKLA------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQP  211 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (221)
                      +-+|-+.....|++++.      .+|+++++|||+++     +|+.....+.+.++++..++
T Consensus       279 ~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~-----LD~~~~~~~~~~l~~l~~~g  335 (365)
T 3qf7_A          279 GLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSS-----LDTENKEKIASVLKELERLN  335 (365)
T ss_dssp             GSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTT-----SCHHHHHHHHHHHHGGGGSS
T ss_pred             hCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCcc-----CCHHHHHHHHHHHHHHHhCC
Confidence            34455666677888887      79999999999999     99999999999999887654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.90  E-value=5.9e-06  Score=58.89  Aligned_cols=43  Identities=5%  Similarity=0.029  Sum_probs=31.8

Q ss_pred             ChHHHHHHHHHH-----HhCCCCCccccC--CCCCCCccccchHHHHHHHHHHHH
Q 027607          159 NFEKPFLYLARK-----LAGDPNLHFVES--PALAPPEVQIDLAAQQQHEAELAA  206 (221)
Q Consensus       159 gv~~~~~~l~~~-----l~~~~~~~~~~e--p~~~~~~~~~~~~~~~~~~~~~~~  206 (221)
                      |.+.....|+++     +..+|++.++||  |...     +++.....+.+.+++
T Consensus        79 gG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~-----ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           79 YFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL-----FSKKFRDLVRQIMHD  128 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG-----GCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhccccccccCCCEEEEeCCCCccc-----CCHHHHHHHHHHHhc
Confidence            445555667775     788888888898  8887     887777777776654

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.88  E-value=6.3e-05  Score=59.32  Aligned_cols=81  Identities=9%  Similarity=0.030  Sum_probs=53.4

Q ss_pred             ccccccEEEEEEECCChhh-hccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc---cHHHHHHHhhcCCeEEEecccCC
Q 027607           82 YYIHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV---KAKQVTFHRKKNLQYYEISAKSN  157 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~s~~~~  157 (221)
                      ...++|.+++|... ++.. ...+..++.....  .++|.++|+||+|+.+...   ..+........+++++.+|+.++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~--~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~  203 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET--LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQ  203 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH--HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh--cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            46789999987554 4432 2223333332222  3788899999999976543   12233445567889999999999


Q ss_pred             CChHHHHH
Q 027607          158 YNFEKPFL  165 (221)
Q Consensus       158 ~gv~~~~~  165 (221)
                      .|++.+..
T Consensus       204 ~gl~~L~~  211 (358)
T 2rcn_A          204 DGLKPLEE  211 (358)
T ss_dssp             BTHHHHHH
T ss_pred             cCHHHHHH
Confidence            99887654

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.77  E-value=4.5e-06  Score=59.83  Aligned_cols=21  Identities=43%  Similarity=0.762  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |+|+||+|||||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999997753

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.76  E-value=1.3e-05  Score=58.15  Aligned_cols=22  Identities=32%  Similarity=0.611  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++|+|++|||||||++.++.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~   26 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQ   26 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998653

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.74  E-value=1.5e-05  Score=56.76  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++|+|++|||||||++.+..
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3689999999999999998664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.72  E-value=1.3e-05  Score=62.07  Aligned_cols=22  Identities=23%  Similarity=0.412  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++|+|++|||||||+|.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            4799999999999999999653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.72  E-value=3.1e-05  Score=61.09  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++|+|++|||||||+|.|+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHC
T ss_pred             CEEEEECCCCccHHHHHHHHhc
Confidence            3689999999999999999664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.72  E-value=1.6e-05  Score=58.03  Aligned_cols=20  Identities=30%  Similarity=0.431  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|++|||||||++.+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999855

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.70  E-value=1.9e-05  Score=55.10  Aligned_cols=22  Identities=36%  Similarity=0.549  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      =.++++|++|||||||++.+..
T Consensus        34 e~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           34 IMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.69  E-value=1.8e-05  Score=57.34  Aligned_cols=22  Identities=27%  Similarity=0.480  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|+++|++|||||||++.+..
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHh
Confidence            3589999999999999998653

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=97.69  E-value=8.9e-05  Score=60.21  Aligned_cols=26  Identities=19%  Similarity=0.226  Sum_probs=23.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.+-.-|+|+|++++|||||+|+|+.
T Consensus        64 ~~~v~vVsV~G~~~~GKStLLN~llg   89 (447)
T 3q5d_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLR   89 (447)
T ss_dssp             TSBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCcHHHHHHHHhh
Confidence            55677899999999999999999874

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.68  E-value=8.4e-06  Score=58.88  Aligned_cols=24  Identities=25%  Similarity=0.490  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.|+|+|++|||||||+++|+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHh
Confidence            334689999999999999999764

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.67  E-value=2.1e-05  Score=57.97  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      --++|+|++|||||||++.+..
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            3689999999999999998654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.64  E-value=3.4e-05  Score=55.29  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|+++|++|||||||++.+..
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4699999999999999998653

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.64  E-value=2.9e-05  Score=56.60  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456789999999999999999854

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.64  E-value=2.3e-05  Score=57.62  Aligned_cols=22  Identities=45%  Similarity=0.812  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++|+|++|||||||++.+..
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            4689999999999999998653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.61  E-value=0.00013  Score=56.30  Aligned_cols=21  Identities=29%  Similarity=0.627  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.++++|++|||||||+|.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999976

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.56  E-value=0.0004  Score=56.36  Aligned_cols=65  Identities=17%  Similarity=0.148  Sum_probs=37.8

Q ss_pred             EEEEEEEecCCcccccc-ccc-----cccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCC
Q 027607           61 KIRFYCWDTAGQEKFGG-LRD-----GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN  131 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  131 (221)
                      .+.+.++||||...... ...     ..+...+.+++|+|+....   +.......+..   ..+ .-+|+||.|...
T Consensus       183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~---~~~~~~~~f~~---~l~i~gvVlnK~D~~~  254 (433)
T 2xxa_A          183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ---DAANTAKAFNE---ALPLTGVVLTKVDGDA  254 (433)
T ss_dssp             TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT---THHHHHHHHHH---HSCCCCEEEECTTSSS
T ss_pred             CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH---HHHHHHHHHhc---cCCCeEEEEecCCCCc
Confidence            45789999999643211 111     1133678899999987542   22222222322   344 347899999754

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.54  E-value=3.2e-05  Score=56.49  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=26.9

Q ss_pred             HHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607          165 LYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       165 ~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      ..|++++..+|++.++|||+++         ....+.+.++++
T Consensus       113 v~lAraL~~~p~lllLDEPts~---------~~~~l~~~l~~l  146 (208)
T 3b85_A          113 LAYMRGRTLNDAFVILDEAQNT---------TPAQMKMFLTRL  146 (208)
T ss_dssp             GGGGTTCCBCSEEEEECSGGGC---------CHHHHHHHHTTB
T ss_pred             HHHHHHHhcCCCEEEEeCCccc---------cHHHHHHHHHHh
Confidence            5689999999999999999987         555556666655

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.52  E-value=7.7e-05  Score=52.63  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      --.|+++|++||||||+.+.+.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Confidence            3579999999999999999854

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.51  E-value=4.4e-05  Score=54.87  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++++|++|||||||++.+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g   23 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHh
Confidence            589999999999999998553

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.50  E-value=5.6e-05  Score=55.09  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|+|+|++|||||||++.+.
T Consensus         5 ~~~~i~i~G~~GsGKSTl~~~l~   27 (211)
T 3asz_A            5 KPFVIGIAGGTASGKTTLAQALA   27 (211)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.48  E-value=7.2e-05  Score=54.53  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcC
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      ---|+|+|++|||||||++.|...
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhh
Confidence            346899999999999999997643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.48  E-value=6.7e-05  Score=56.13  Aligned_cols=26  Identities=19%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+-..|+|+|++|||||||++.+..
T Consensus        22 i~~g~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           22 SMRPFLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            34457899999999999999998553

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.47  E-value=6e-05  Score=53.96  Aligned_cols=20  Identities=40%  Similarity=0.574  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++++|++|||||||++.+.
T Consensus         4 ii~l~G~~GaGKSTl~~~L~   23 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLA   23 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHh
Confidence            57999999999999999865

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.47  E-value=6.9e-05  Score=56.08  Aligned_cols=22  Identities=36%  Similarity=0.563  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-.|+|+|++|||||||++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999855

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.45  E-value=6.5e-05  Score=56.82  Aligned_cols=21  Identities=24%  Similarity=0.460  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      =.++|+|++|||||||++.++
T Consensus        26 ~~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           26 GLILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             EEEEEECSTTCSHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHH
Confidence            469999999999999999865

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.43  E-value=7.6e-05  Score=52.51  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+++|++||||||+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La   25 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLA   25 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            369999999999999999854

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.42  E-value=8.8e-05  Score=53.61  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      --.|+++|++||||||+.+.+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            3479999999999999999865

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.42  E-value=7.1e-05  Score=57.78  Aligned_cols=21  Identities=24%  Similarity=0.377  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      =.++|+|++|||||||++.++
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~  147 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLI  147 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            468999999999999999855

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.40  E-value=8.5e-05  Score=53.75  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      --.|+|+|++|||||||++.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999854

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.39  E-value=9.8e-05  Score=53.47  Aligned_cols=23  Identities=35%  Similarity=0.549  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      ..|+|+|++||||||+++.+...
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999986543

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.38  E-value=5.1e-05  Score=56.19  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=14.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.|+|+|++|||||||++.+.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             CEEEEECSCC----CHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999866

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.38  E-value=0.00013  Score=56.63  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=20.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHH
Confidence            456789999999999999999854

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.37  E-value=9.6e-05  Score=53.63  Aligned_cols=22  Identities=41%  Similarity=0.677  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++|||||||++.|..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.35  E-value=8.9e-05  Score=52.62  Aligned_cols=22  Identities=36%  Similarity=0.481  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++++|++|+|||||++.+..
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~   60 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLK   60 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999998653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.34  E-value=0.00012  Score=51.41  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 027607           14 FKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l   33 (221)
                      ..|+|+|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999986

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.32  E-value=0.0001  Score=54.23  Aligned_cols=21  Identities=24%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|+|++|||||||++.+..
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998664

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.31  E-value=0.00012  Score=52.92  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+|+|+|++||||||+.+.|..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999998654

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.30  E-value=0.00015  Score=52.58  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.|+++|++||||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998653

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.30  E-value=0.00014  Score=51.04  Aligned_cols=20  Identities=15%  Similarity=0.147  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|+|++||||||+.+.|.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~   22 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLS   22 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.29  E-value=0.00013  Score=56.32  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++++|++|||||||+|.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCcHHHHHHHhcc
Confidence            4689999999999999998553

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.29  E-value=0.00012  Score=58.22  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-+++|+|++|||||||++.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~  191 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLA  191 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHH
Confidence            4589999999999999999844

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.28  E-value=7.4e-05  Score=52.74  Aligned_cols=20  Identities=45%  Similarity=0.718  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|++|||||||++.++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~   23 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMM   23 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999855

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.28  E-value=0.00017  Score=52.00  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +...|+|+|++||||||+.+.|..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999998654

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.28  E-value=0.00018  Score=55.96  Aligned_cols=25  Identities=20%  Similarity=0.189  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ....+-|+|+|++|||||||++.+.
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHH
Confidence            3456889999999999999999854

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.27  E-value=0.00015  Score=53.31  Aligned_cols=21  Identities=33%  Similarity=0.401  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+|+++|++||||||+.+.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.27  E-value=0.00015  Score=51.26  Aligned_cols=22  Identities=36%  Similarity=0.450  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..++|+|++|||||||+++++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4689999999999999999764

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.00015  Score=52.47  Aligned_cols=22  Identities=23%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++||||||+.+.|..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998653

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.25  E-value=0.00013  Score=57.62  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      =.|+|+|++|||||||++.++.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g  145 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLD  145 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            3799999999999999998653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.24  E-value=0.0002  Score=50.51  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|.|++||||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4689999999999999999664

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.24  E-value=0.00021  Score=51.66  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+--.|+|+|++|||||||.+.+.
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999854

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.23  E-value=0.00017  Score=52.61  Aligned_cols=21  Identities=29%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQII   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999864

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.21  E-value=0.00019  Score=52.43  Aligned_cols=21  Identities=38%  Similarity=0.528  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ++|+|+|++||||||+.+.|.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~   21 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIV   21 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999864

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.21  E-value=0.00021  Score=51.00  Aligned_cols=21  Identities=29%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|.|++||||||+.+.|.
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~   24 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAM   24 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.19  E-value=0.00024  Score=53.40  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-..|+|+|++||||||+++.+.
T Consensus        26 ~g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           26 IAPVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             TSCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            44689999999999999999855

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.19  E-value=0.00019  Score=50.91  Aligned_cols=21  Identities=33%  Similarity=0.425  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+|+|++|||||||++++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999653

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.18  E-value=0.00027  Score=50.28  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -..|+++|++||||||+.+.|.
T Consensus         4 g~~I~l~G~~GsGKST~~~~La   25 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLA   25 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.18  E-value=0.00024  Score=55.09  Aligned_cols=24  Identities=21%  Similarity=0.253  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...|+|+|++|||||||++.+.
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~  101 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            344789999999999999999854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.17  E-value=0.00018  Score=56.29  Aligned_cols=20  Identities=35%  Similarity=0.818  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|++|||||||++.++
T Consensus       173 ~v~i~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGG
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68999999999999999854

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.17  E-value=0.00025  Score=50.65  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|.|.+||||||+.+.|.
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~   24 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIV   24 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999864

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.17  E-value=0.00028  Score=50.31  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +..+|+++|++||||||+.+.|..
T Consensus         9 ~~~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A            9 KGINILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            346899999999999999998653

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.16  E-value=0.00027  Score=51.27  Aligned_cols=23  Identities=35%  Similarity=0.432  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|+|+|++|||||||++.+.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~   42 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQ   42 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999855

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.16  E-value=0.0002  Score=55.32  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +--.++++|++||||||+++.+.
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHH
Confidence            34579999999999999999855

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.15  E-value=0.00015  Score=49.97  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.++++|++|+|||||++.+..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~   58 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVA   58 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.15  E-value=0.00022  Score=55.12  Aligned_cols=22  Identities=32%  Similarity=0.425  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      --.|+++|++|||||||++.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHH
Confidence            3579999999999999999855

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.15  E-value=0.0003  Score=50.78  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ......|+|+|++||||||+.+.|.
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La   41 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLA   41 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3445789999999999999999865

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.14  E-value=0.0002  Score=56.81  Aligned_cols=21  Identities=38%  Similarity=0.678  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.++|+|++|||||||++.++
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999855

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.14  E-value=0.00015  Score=52.48  Aligned_cols=84  Identities=7%  Similarity=-0.046  Sum_probs=52.1

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCccccHHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNRQVKAKQ  138 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~~~~~~~  138 (221)
                      +.+.++|+|+..  .......+..+|.++++...+...  .....+...+...   ....++.+|+|+.+.... ...+.
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~-~~~~~  150 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT-MLNVL  150 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE-EEHHH
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch-HHHHH
Confidence            568899999854  233345567799999999876543  4555555555433   235677899999995432 23333


Q ss_pred             HHHHhhcCCeEE
Q 027607          139 VTFHRKKNLQYY  150 (221)
Q Consensus       139 ~~~~~~~~~~~~  150 (221)
                      .+.....+.+++
T Consensus       151 ~~~l~~~~~~vl  162 (206)
T 4dzz_A          151 KESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHTCCBC
T ss_pred             HHHHHHcCCcee
Confidence            444444454433

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.14  E-value=0.00029  Score=52.13  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=20.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+-.-|+|.|++|||||||++.+.
T Consensus        18 ~~g~~i~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           18 TQPFTVLIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            445689999999999999999744

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.14  E-value=0.00026  Score=51.05  Aligned_cols=21  Identities=33%  Similarity=0.482  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|+|.|++||||||+.+.|..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            689999999999999998553

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.14  E-value=0.00027  Score=51.81  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -..|+|+|++||||||+.+.|.
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La   25 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQ   25 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999854

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.14  E-value=0.00031  Score=50.84  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|+|+|++|||||||++.+.
T Consensus        21 ~~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           21 GRLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            44789999999999999999855

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.13  E-value=0.00032  Score=50.85  Aligned_cols=22  Identities=18%  Similarity=0.238  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|.|++||||||+.+.|.
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~   25 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLK   25 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHH
Confidence            3689999999999999999855

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.12  E-value=0.00021  Score=57.64  Aligned_cols=22  Identities=27%  Similarity=0.404  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      =.|+|+|++|||||||++.++.
T Consensus       168 gii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHh
Confidence            3589999999999999998663

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.12  E-value=0.00023  Score=56.60  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .=.|+|+|++|||||||++.++.
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHh
Confidence            34699999999999999998653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.12  E-value=0.00028  Score=50.31  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|++||||||+.+.|.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~   22 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999855

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.12  E-value=0.00032  Score=49.46  Aligned_cols=22  Identities=18%  Similarity=0.351  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|++.|++||||||+.+.|..
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998653

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.12  E-value=0.00035  Score=53.66  Aligned_cols=24  Identities=17%  Similarity=0.181  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...|+|.|++|||||||++.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            456889999999999999999744

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.11  E-value=0.00035  Score=52.21  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +..+|+|+|++||||||+.+.|.
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            55799999999999999999865

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.11  E-value=0.00029  Score=49.85  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+++|++||||||+.+.+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHH
Confidence            3579999999999999999855

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.11  E-value=0.00024  Score=54.14  Aligned_cols=20  Identities=30%  Similarity=0.499  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++++|++|+|||||++.+.+
T Consensus        47 vlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            99999999999999998653

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.11  E-value=0.00033  Score=50.04  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~   26 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALA   26 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.10  E-value=0.0003  Score=50.02  Aligned_cols=21  Identities=24%  Similarity=0.344  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+++|++||||||+.+.|.
T Consensus         6 ~~i~l~G~~GsGKst~a~~La   26 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLA   26 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.09  E-value=0.00031  Score=48.36  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+|+|++|+|||||+.++..
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            358999999999999999653

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.07  E-value=0.00046  Score=49.15  Aligned_cols=25  Identities=28%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..+...|+++|.+||||||+.+.+.
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHH
Confidence            3455789999999999999999854

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.06  E-value=0.00028  Score=55.53  Aligned_cols=22  Identities=27%  Similarity=0.487  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      +++++|++|+|||||++.+.+.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999986643

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.06  E-value=0.00023  Score=58.22  Aligned_cols=21  Identities=38%  Similarity=0.540  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.++|+|++|||||||++.++
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~  159 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLC  159 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            368999999999999999855

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.05  E-value=0.00028  Score=58.46  Aligned_cols=21  Identities=33%  Similarity=0.650  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.++|+|++|||||||+++++
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~  281 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIM  281 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHG
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            459999999999999999865

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.05  E-value=0.00035  Score=50.81  Aligned_cols=22  Identities=41%  Similarity=0.528  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+|+++|+|||||+|....|..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999998653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.05  E-value=0.00053  Score=49.49  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-..|+|.|++||||||+.+.|.
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~   36 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLV   36 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34679999999999999999865

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.05  E-value=0.0003  Score=49.56  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      +|+|+|++||||||+.+.|.
T Consensus         6 ~i~i~G~~GsGKsTla~~La   25 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALA   25 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            59999999999999999854

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.04  E-value=0.00031  Score=52.70  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++++|++|+|||||++.+..
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998653

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.04  E-value=0.00033  Score=51.15  Aligned_cols=21  Identities=19%  Similarity=0.362  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +|+|+|++||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998653

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.03  E-value=0.00043  Score=53.05  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +..-|++.|++||||||+.+.+..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999999753

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.03  E-value=0.00042  Score=48.67  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..++|+|++|||||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999999664

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.02  E-value=0.0005  Score=49.87  Aligned_cols=22  Identities=27%  Similarity=0.205  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|.|.+||||||+.+.|.
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~   31 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLV   31 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHH
Confidence            4679999999999999999855

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.00  E-value=0.00034  Score=55.27  Aligned_cols=23  Identities=35%  Similarity=0.429  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +--.|+++|++||||||+++.+.
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCChHHHHHHHHH
Confidence            34579999999999999999855

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.00  E-value=0.00037  Score=51.21  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++++|++|+|||||++.+..
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            578999999999999998663

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.99  E-value=0.00048  Score=49.68  Aligned_cols=22  Identities=27%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|.|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998654

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.99  E-value=0.0022  Score=52.02  Aligned_cols=65  Identities=20%  Similarity=0.233  Sum_probs=41.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc------------------CccC---CcccCCcceeeeeeEE--Ee-cCcEEEEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT------------------GEFE---KKYEPTIGVEVHPLDF--FT-NCGKIRFY   65 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~------------------~~~~---~~~~~~~~~~~~~~~~--~~-~~~~~~i~   65 (221)
                      +.+-.-|+|+|+.++|||+|+|.++.                  ..|.   .....|.|+-.....+  .. ++....+.
T Consensus        64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl  143 (457)
T 4ido_A           64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL  143 (457)
T ss_dssp             TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred             CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence            55777888999999999999996541                  1221   1223344544332222  22 34567899


Q ss_pred             EEecCCccc
Q 027607           66 CWDTAGQEK   74 (221)
Q Consensus        66 ~~D~~g~~~   74 (221)
                      ++||.|...
T Consensus       144 llDTEG~~d  152 (457)
T 4ido_A          144 LMDTQGTFD  152 (457)
T ss_dssp             EEEECCBTC
T ss_pred             EEeccCCCC
Confidence            999999543

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.98  E-value=0.00046  Score=49.40  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|+|++||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La   30 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIV   30 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999864

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.97  E-value=0.00047  Score=51.11  Aligned_cols=23  Identities=26%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +.+.|+|.|++||||||+.+.+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            45789999999999999999854

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.96  E-value=0.00049  Score=48.01  Aligned_cols=21  Identities=19%  Similarity=0.203  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +|+|.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998553

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.96  E-value=0.00038  Score=57.08  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +--.|+|+|++|||||||++.|..
T Consensus       292 ~GeVI~LVGpNGSGKTTLl~~LAg  315 (503)
T 2yhs_A          292 APFVILMVGVNGVGKTTTIGKLAR  315 (503)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCcccHHHHHHHHHH
Confidence            445799999999999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.95  E-value=0.00045  Score=50.93  Aligned_cols=21  Identities=38%  Similarity=0.586  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|+|++||||||+.+.|.
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La   28 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRIT   28 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999865

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.95  E-value=0.00044  Score=51.98  Aligned_cols=21  Identities=24%  Similarity=0.240  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|+|+|++|||||||.+.|..
T Consensus         3 li~I~G~~GSGKSTla~~La~   23 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQ   23 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999998653

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.93  E-value=0.00068  Score=49.35  Aligned_cols=86  Identities=10%  Similarity=-0.018  Sum_probs=51.5

Q ss_pred             EEEEEEEecCCc-cccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH
Q 027607           61 KIRFYCWDTAGQ-EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV  139 (221)
Q Consensus        61 ~~~i~~~D~~g~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~  139 (221)
                      .+.+.++|+|+. ..  ......+..+|.++++...+ ..+...+...+..+.... +.++.+|+|+.+........+..
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~vv~N~~~~~~~~~~~~~~  142 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG-NNRFRILLTIIPPYPSKDGDEAR  142 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC-SSSEEEEECSBCCTTSCHHHHHH
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc-CCCEEEEEEecCCccchHHHHHH
Confidence            356889999885 32  22344567889999888865 344555555555554422 56788999999865411223333


Q ss_pred             HHHhhcCCeEE
Q 027607          140 TFHRKKNLQYY  150 (221)
Q Consensus       140 ~~~~~~~~~~~  150 (221)
                      +.....+.+++
T Consensus       143 ~~l~~~g~~v~  153 (209)
T 3cwq_A          143 QLLTTAGLPLF  153 (209)
T ss_dssp             HHHHHTTCCBC
T ss_pred             HHHHHcCCchh
Confidence            33444555433

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.93  E-value=0.0006  Score=49.85  Aligned_cols=22  Identities=23%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+.|+|.|.+||||||+.+.|.
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~   25 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFA   25 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999864

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.93  E-value=0.00051  Score=50.53  Aligned_cols=20  Identities=30%  Similarity=0.396  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|++||||||+.+.|.
T Consensus         2 ~I~l~G~~GsGKsT~a~~La   21 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVK   21 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999864

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.93  E-value=0.00041  Score=56.87  Aligned_cols=22  Identities=27%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      =.++|+|++|||||||++.+..
T Consensus        30 e~~~liG~nGsGKSTLl~~l~G   51 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVT   51 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhc
Confidence            4679999999999999998654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.93  E-value=0.00033  Score=54.54  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      -.++|+|++|||||||++.++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             cEEEEEecCCCCHHHHHHHHHhh
Confidence            35789999999999999997743

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.93  E-value=0.0002  Score=52.15  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|++||||||+++.|.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58999999999999999854

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.92  E-value=0.00045  Score=52.59  Aligned_cols=21  Identities=29%  Similarity=0.501  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++++|++|+|||||++.+..
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHH
Confidence            399999999999999998653

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.91  E-value=0.00067  Score=47.95  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-..|+++|.+||||||+.+.|.
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~   26 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALE   26 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999854

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.91  E-value=0.00044  Score=54.15  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++++|++|+|||||++.+.+
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia~   73 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIAS   73 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.90  E-value=0.00062  Score=51.04  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+.+.|+|.|++||||||+.+.|..
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999998543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.90  E-value=0.00058  Score=49.62  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|.|.+||||||+.+.|.
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~   30 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLV   30 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3679999999999999999855

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.90  E-value=0.00057  Score=48.77  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|++.|.+||||||+.+.|..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998653

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.87  E-value=0.00058  Score=48.97  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++||||||+.+.|..
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998653

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.85  E-value=0.0011  Score=50.50  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+.+.|+|.|.+||||||+.+.|.
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH
Confidence            345789999999999999999855

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.85  E-value=0.0007  Score=47.89  Aligned_cols=22  Identities=32%  Similarity=0.507  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.|++|+|||+|++.+..
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998654

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.85  E-value=0.00055  Score=50.20  Aligned_cols=22  Identities=32%  Similarity=0.367  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++||||||+.+.|..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998653

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.83  E-value=0.00057  Score=55.55  Aligned_cols=21  Identities=14%  Similarity=0.355  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++++|++|||||||++.+.+
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            789999999999999998554

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.81  E-value=0.0006  Score=52.38  Aligned_cols=21  Identities=29%  Similarity=0.632  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|+|++|+|||||++.+..
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            588999999999999998653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.81  E-value=0.00069  Score=49.57  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|+|++||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La   26 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIK   26 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999854

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.81  E-value=0.00071  Score=47.37  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|.+||||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKsT~a~~La   23 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELA   23 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            59999999999999999854

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.79  E-value=0.00062  Score=51.12  Aligned_cols=23  Identities=26%  Similarity=0.481  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|+++|++||||||+.+.+.
T Consensus        31 ~~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           31 QPIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             SCEEEEEESCGGGTTHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999999864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.79  E-value=0.00079  Score=47.94  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|.|++||||||+.+.|.
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~   27 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIV   27 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999865

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.79  E-value=0.00072  Score=50.09  Aligned_cols=21  Identities=24%  Similarity=0.216  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|+|++|+|||||+..+..
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999999765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.79  E-value=0.00049  Score=48.71  Aligned_cols=21  Identities=29%  Similarity=0.159  Sum_probs=15.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+|.|.+||||||+.+.|.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CEEEEECCC----CHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999864

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.77  E-value=0.00076  Score=47.84  Aligned_cols=21  Identities=43%  Similarity=0.582  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|+|+|.+||||||+.+.|..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            599999999999999998653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.77  E-value=0.00091  Score=49.47  Aligned_cols=22  Identities=27%  Similarity=0.444  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|+|+|++||||||+.+.|.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La   37 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLA   37 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999854

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.77  E-value=0.00076  Score=49.15  Aligned_cols=21  Identities=24%  Similarity=0.181  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++++|++|+|||||+..+..
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999999765

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.76  E-value=0.00069  Score=50.80  Aligned_cols=21  Identities=38%  Similarity=0.365  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -+|+++|++||||||+.+.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999854

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.76  E-value=0.00076  Score=50.85  Aligned_cols=21  Identities=33%  Similarity=0.572  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|+++|.+||||||+.+.|.
T Consensus         5 ~lIvl~G~pGSGKSTla~~La   25 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLA   25 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHH
Confidence            479999999999999999865

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.74  E-value=0.00083  Score=49.20  Aligned_cols=20  Identities=25%  Similarity=0.557  Sum_probs=17.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      |.|+|+|||||+|....|..
T Consensus        32 I~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           32 IFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999998653

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.74  E-value=0.00095  Score=46.60  Aligned_cols=20  Identities=30%  Similarity=0.519  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|.+||||||+.+.|.
T Consensus         9 ~i~l~G~~GsGKSTva~~La   28 (168)
T 1zuh_A            9 HLVLIGFMGSGKSSLAQELG   28 (168)
T ss_dssp             EEEEESCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999854

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.72  E-value=0.0009  Score=50.20  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.|++|+|||||++++..
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4699999999999999998653

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.69  E-value=0.00098  Score=48.32  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.+|+|++|+||||++.++.
T Consensus        25 ~~~I~G~NgsGKStil~ai~   44 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAIL   44 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHH
Confidence            45789999999999999864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.69  E-value=0.0011  Score=47.52  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.+.|+++|.+||||||+.+.|.
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~   33 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILK   33 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999999855

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.66  E-value=0.0013  Score=47.74  Aligned_cols=23  Identities=17%  Similarity=0.284  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|+++|++||||||+.+.+.
T Consensus        24 ~~~~i~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           24 RGLTIWLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHH
Confidence            34579999999999999999854

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.66  E-value=0.0011  Score=47.84  Aligned_cols=22  Identities=27%  Similarity=0.276  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.|++|+|||+|++++..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.64  E-value=0.00086  Score=47.27  Aligned_cols=23  Identities=30%  Similarity=0.484  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.+++.|++|+|||+|++.+..
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.64  E-value=0.0012  Score=48.72  Aligned_cols=23  Identities=13%  Similarity=0.231  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.+++.|++|+|||+|++.+..
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998653

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.64  E-value=0.001  Score=52.90  Aligned_cols=21  Identities=29%  Similarity=0.257  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.++++|++|+|||||++.+.
T Consensus       170 ~~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          170 RYWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999865

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.64  E-value=0.0014  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.385  Sum_probs=20.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-.-|+|.|++||||||+++.+.
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~   47 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVY   47 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHH
Confidence            44679999999999999999855

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.63  E-value=0.00054  Score=52.56  Aligned_cols=24  Identities=17%  Similarity=0.256  Sum_probs=17.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.+.|+|.|++||||||+.+.|..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            456799999999999999998653

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.62  E-value=0.00017  Score=53.32  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++|+|++|||||||++++..
T Consensus        30 ~~i~GpnGsGKSTll~~i~g   49 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVT   49 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            57899999999999998653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.59  E-value=0.0011  Score=50.50  Aligned_cols=21  Identities=24%  Similarity=0.373  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|+|++|+|||||+..+..
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            588999999999999998764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.55  E-value=0.00082  Score=59.61  Aligned_cols=45  Identities=20%  Similarity=0.116  Sum_probs=39.1

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHh
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAA  207 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~  207 (221)
                      +|-+.....|++++..+|++.++|||+.+     +|......+.+.++++
T Consensus       903 SGGQkQRVaLArAL~~~P~LLLLDEPT~g-----LD~~s~~~L~~~L~~~  947 (986)
T 2iw3_A          903 SGGQKVKLVLAAGTWQRPHLIVLDEPTNY-----LDRDSLGALSKALKEF  947 (986)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECGGGT-----CCHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHHHhCCCEEEEECCccC-----CCHHHHHHHHHHHHHh
Confidence            45566667799999999999999999999     9999999888888765

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.55  E-value=0.0011  Score=47.91  Aligned_cols=21  Identities=33%  Similarity=0.414  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.+++.||+|+||||++.++.
T Consensus        59 n~ili~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFI   79 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            359999999999999998855

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=96.51  E-value=0.0017  Score=48.10  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...|+|+|++||||||+.+.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHH
Confidence            455689999999999999999855

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.51  E-value=0.0014  Score=51.43  Aligned_cols=42  Identities=17%  Similarity=0.208  Sum_probs=36.7

Q ss_pred             HHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          164 FLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       164 ~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      ...+++++...|++.++|||+.+     +|+.....+.+.++++..+
T Consensus       262 ~l~~a~~l~~~p~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~~  303 (339)
T 3qkt_A          262 RLAMSLYLAGEISLLILDEPTPY-----LDEERRRKLITIMERYLKK  303 (339)
T ss_dssp             HHHHHHHTTTTTCEEEEECCCTT-----CCHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHhcCCCCEEEEECCCCC-----CCHHHHHHHHHHHHHHHhc
Confidence            35677888889999999999999     9999999999999887654

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.50  E-value=0.0017  Score=47.93  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -..+++|+|++||||||+.+.|..
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~   30 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKE   30 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHH
Confidence            357899999999999999998653

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.48  E-value=0.0015  Score=50.22  Aligned_cols=22  Identities=36%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-.|+++|++||||||++..+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3579999999999999999854

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.47  E-value=0.0019  Score=46.53  Aligned_cols=20  Identities=25%  Similarity=0.439  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|+|.|++||||||+.+.|.
T Consensus         4 ~i~i~G~~GsGKst~~~~la   23 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            79999999999999999854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.47  E-value=0.0015  Score=50.12  Aligned_cols=22  Identities=23%  Similarity=0.538  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+++|++||||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.45  E-value=0.0018  Score=44.17  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ....|++.|++|+|||++.+.+..
T Consensus        23 ~~~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           23 TDIAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHH
Confidence            345699999999999999998543

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.44  E-value=0.0014  Score=54.59  Aligned_cols=20  Identities=40%  Similarity=0.652  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|++|||||||++.++
T Consensus        41 ~~~l~G~nGsGKSTL~~~~l   60 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQFL   60 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            58999999999999999853

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=96.43  E-value=0.0015  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      =-++|+|++|||||||++.++..
T Consensus       132 ~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          132 AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999986643

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.42  E-value=0.0022  Score=50.14  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++|||||||...|..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            5799999999999999998553

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.42  E-value=0.0017  Score=46.64  Aligned_cols=29  Identities=28%  Similarity=0.426  Sum_probs=23.6

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~   37 (221)
                      .+.....|+|+|++|+|||||...|....
T Consensus        30 v~~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           30 VDIYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             EEETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            44556789999999999999999976443

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.39  E-value=0.0018  Score=49.58  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.+++.|++|+|||+|++++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHH
Confidence            346899999999999999998653

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.39  E-value=0.0018  Score=47.44  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++|.|++|+|||||++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.39  E-value=0.0029  Score=51.06  Aligned_cols=24  Identities=42%  Similarity=0.628  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ...-|+++|++||||||+.++|..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345688999999999999999663

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.38  E-value=0.0027  Score=48.81  Aligned_cols=25  Identities=28%  Similarity=0.424  Sum_probs=20.8

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+.-.+++.|++|+|||++++.+..
T Consensus        45 ~~~~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           45 RPIGSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             SCSEEEEEESCSSSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHH
Confidence            3445799999999999999998553

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.38  E-value=0.0019  Score=51.10  Aligned_cols=47  Identities=17%  Similarity=0.076  Sum_probs=40.0

Q ss_pred             CCChHHHHHHHHHHHh---------CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhh
Q 027607          157 NYNFEKPFLYLARKLA---------GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAA  208 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~---------~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~  208 (221)
                      .++-+.-...|+.++.         ..|++.++|||.++     +|+.....+.+.+.++.
T Consensus       266 lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~-----LD~~~~~~l~~~l~~~~  321 (359)
T 2o5v_A          266 ASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAE-----LDPHRRQYLLDLAASVP  321 (359)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGC-----CCHHHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCcccc-----CCHHHHHHHHHHHHhcC
Confidence            4455666677888888         79999999999999     99999999999998764

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.38  E-value=0.0019  Score=49.14  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.+++.|++|+|||+|++++..
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            35699999999999999998653

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.38  E-value=0.002  Score=49.51  Aligned_cols=22  Identities=27%  Similarity=0.297  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..+++.|++|+|||+|.+++..
T Consensus        37 ~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           37 LILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5678889999999999998653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.38  E-value=0.0018  Score=47.96  Aligned_cols=21  Identities=38%  Similarity=0.620  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|+|++|+|||||+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999877654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.36  E-value=0.0019  Score=49.69  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.|++.|++|+|||+|++++..
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHH
Confidence            34699999999999999998653

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.35  E-value=0.0014  Score=49.40  Aligned_cols=25  Identities=32%  Similarity=0.312  Sum_probs=20.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..+-..|+|.|..||||||+++.|.
T Consensus        21 ~~~~~~I~ieG~~GsGKST~~~~L~   45 (263)
T 1p5z_B           21 GTRIKKISIEGNIAAGKSTFVNILK   45 (263)
T ss_dssp             --CCEEEEEECSTTSSHHHHHTTTG
T ss_pred             ccCceEEEEECCCCCCHHHHHHHHH
Confidence            3455789999999999999999743

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.35  E-value=0.0026  Score=49.05  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-|+|+||+|||||||...+..
T Consensus        11 ~~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHH
Confidence            4588999999999999998653

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.35  E-value=0.0021  Score=46.55  Aligned_cols=21  Identities=33%  Similarity=0.392  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.|++|+|||+|++.+..
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998653

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.34  E-value=0.00066  Score=54.69  Aligned_cols=19  Identities=26%  Similarity=0.436  Sum_probs=0.0

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 027607           15 KLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l   33 (221)
                      .++++|++|||||||++++
T Consensus        62 ~~~lvG~NGaGKStLl~aI   80 (415)
T 4aby_A           62 FCAFTGETGAGKSIIVDAL   80 (415)
T ss_dssp             EEEEEESHHHHHHHHTHHH
T ss_pred             cEEEECCCCCCHHHHHHHH

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.33  E-value=0.0025  Score=49.07  Aligned_cols=24  Identities=33%  Similarity=0.584  Sum_probs=20.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+...+++.|++|+|||+|++.+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999998644

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.32  E-value=0.0014  Score=50.99  Aligned_cols=49  Identities=14%  Similarity=0.045  Sum_probs=40.0

Q ss_pred             CCCChHHHHHHHHHHHh----CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .-.+-+.....|++++.    ..+++.++|||+++     +|+.....+.+.++++..
T Consensus       219 ~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~  271 (322)
T 1e69_A          219 LLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENSK  271 (322)
T ss_dssp             GSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHhcC
Confidence            33455666677888875    67889999999999     999999999999998753

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.32  E-value=0.0022  Score=49.58  Aligned_cols=85  Identities=12%  Similarity=0.007  Sum_probs=45.0

Q ss_pred             EEEEEEecCCccccccc-c------cc-----ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc
Q 027607           62 IRFYCWDTAGQEKFGGL-R------DG-----YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~-~------~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  129 (221)
                      ..+.++||||....... .      ..     .-...+.+++|+|+....  +.+.. ...+...  -...-+|+||.|.
T Consensus       187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l~~-a~~~~~~--~~i~gvVlTk~D~  261 (306)
T 1vma_A          187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQ-AKIFKEA--VNVTGIILTKLDG  261 (306)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHH-HHHHHHH--SCCCEEEEECGGG
T ss_pred             CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHHHH-HHHHHhc--CCCCEEEEeCCCC
Confidence            45889999995321110 0      00     112467888999987432  11211 1222222  2234567899996


Q ss_pred             CCccccHHHHHHHhhcCCeEEEec
Q 027607          130 KNRQVKAKQVTFHRKKNLQYYEIS  153 (221)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s  153 (221)
                      ...  ...........+.++..++
T Consensus       262 ~~~--gG~~l~~~~~~~~Pi~~i~  283 (306)
T 1vma_A          262 TAK--GGITLAIARELGIPIKFIG  283 (306)
T ss_dssp             CSC--TTHHHHHHHHHCCCEEEEE
T ss_pred             ccc--hHHHHHHHHHHCCCEEEEe
Confidence            432  2235566666777766654

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.30  E-value=0.0027  Score=47.54  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.|++.|++|+|||+|++++..
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            35689999999999999998653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.29  E-value=0.0029  Score=48.81  Aligned_cols=22  Identities=27%  Similarity=0.184  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-|+|+||+|||||||...+..
T Consensus         4 ~~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCcCCHHHHHHHHHH
Confidence            4689999999999999999654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.27  E-value=0.0021  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.|++|+|||||++.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            4589999999999999998653

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=96.26  E-value=0.0022  Score=51.97  Aligned_cols=48  Identities=19%  Similarity=0.113  Sum_probs=40.3

Q ss_pred             CCChHHHHHHHHHHHh----CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLA----GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~----~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ..|-+.....|+.++.    ..++++++|||.++     +|+.....+.+.++++..
T Consensus       334 lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~-----LD~~~~~~l~~~l~~~~~  385 (430)
T 1w1w_A          334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAA-----LDITNVQRIAAYIRRHRN  385 (430)
T ss_dssp             SCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTT-----CCHHHHHHHHHHHHHHCB
T ss_pred             CCcchHHHHHHHHHHHHhcCCCCCEEEeCCCccc-----CCHHHHHHHHHHHHHHhc
Confidence            3555666778888887    57889999999999     999999999999988754

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.26  E-value=0.0032  Score=48.91  Aligned_cols=22  Identities=18%  Similarity=0.279  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|+|++|||||||...|..
T Consensus         6 ~~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998553

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.25  E-value=0.0018  Score=50.85  Aligned_cols=20  Identities=40%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++.|++|+||||+++.+..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            99999999999999998554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.24  E-value=0.0028  Score=44.50  Aligned_cols=29  Identities=14%  Similarity=0.276  Sum_probs=23.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~   37 (221)
                      .+..-.-|++.|++|+||||+.-.|+...
T Consensus        12 v~v~G~gvli~G~SGaGKStlal~L~~rG   40 (181)
T 3tqf_A           12 LVIDKMGVLITGEANIGKSELSLALIDRG   40 (181)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            34556689999999999999999987644

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.21  E-value=0.0025  Score=46.46  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +.|+++|++||||||+.+.+.
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~   24 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVA   24 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999754

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.21  E-value=0.0017  Score=54.25  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=19.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-..|+|+|++|||||||.+.|.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHH
Confidence            34679999999999999999854

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.20  E-value=0.0035  Score=47.40  Aligned_cols=25  Identities=20%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+...+++.|++|+|||+|++++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Confidence            4556899999999999999998654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.17  E-value=0.0024  Score=50.48  Aligned_cols=23  Identities=43%  Similarity=0.499  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.++|.|++|+|||||++.+..
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            34789999999999999998664

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.14  E-value=0.0041  Score=48.83  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ...+|+++|++|+||||+.+.+..
T Consensus        23 ~~~~i~l~G~~G~GKTTl~~~la~   46 (359)
T 2ga8_A           23 YRVCVILVGSPGSGKSTIAEELCQ   46 (359)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHH
Confidence            446899999999999999987543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.14  E-value=0.0032  Score=49.95  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .++|.|++|+|||||++.+..
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~   66 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWE   66 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            699999999999999998663

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.14  E-value=0.0027  Score=49.73  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.|++|+||||+++.+..
T Consensus        48 ~~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           48 HLLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            389999999999999998654

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.11  E-value=0.0044  Score=45.55  Aligned_cols=26  Identities=27%  Similarity=0.179  Sum_probs=20.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHh
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...+-.-|+|.|..||||||+++.+.
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~   42 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLA   42 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            34456789999999999999999854

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.09  E-value=0.0029  Score=50.71  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      -++|+|++|+|||||+..++..
T Consensus       180 i~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHHHH
Confidence            4889999999999999976533

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.07  E-value=0.0018  Score=44.05  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ...|++.|++|+|||++.+.+.
T Consensus        27 ~~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           27 TSPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             SSCEEEEEETTCCHHHHHGGGC
T ss_pred             CCcEEEECCCCccHHHHHHHHH
Confidence            3569999999999999999743

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.03  E-value=0.004  Score=48.41  Aligned_cols=24  Identities=33%  Similarity=0.533  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.|++.|++|+|||+|++++..
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            346799999999999999998653

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.02  E-value=0.0036  Score=48.00  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ...+++.|++|+|||+|++.+..
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998653

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.98  E-value=0.0044  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.355  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +.-.|++.||||+|||+|++++.
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA  236 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACA  236 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHH
Confidence            34689999999999999999955

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.97  E-value=0.0052  Score=47.95  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-|+|+|++|||||||...|..
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998554

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.96  E-value=0.0045  Score=50.00  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -.|++.||||+|||+|++++.
T Consensus       207 rGiLL~GPPGtGKT~lakAiA  227 (428)
T 4b4t_K          207 RGVLLYGPPGTGKTMLVKAVA  227 (428)
T ss_dssp             CEEEEESCTTTTHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999955

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.95  E-value=0.0046  Score=48.10  Aligned_cols=23  Identities=30%  Similarity=0.388  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.|++.|++|+|||+|++++..
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHH
Confidence            35799999999999999998653

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=95.93  E-value=0.0036  Score=54.36  Aligned_cols=20  Identities=30%  Similarity=0.571  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|++|+|||||++.+.
T Consensus       578 i~~I~GpNGsGKSTlLr~ia  597 (765)
T 1ewq_A          578 LVLITGPNMAGKSTFLRQTA  597 (765)
T ss_dssp             EEEEESCSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCChHHHHHHHH
Confidence            58999999999999999854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.91  E-value=0.0053  Score=45.53  Aligned_cols=22  Identities=41%  Similarity=0.478  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..|+|.|..||||||+++.|..
T Consensus         3 ~~i~~~G~~g~GKtt~~~~l~~   24 (241)
T 2ocp_A            3 RRLSIEGNIAVGKSTFVKLLTK   24 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5699999999999999998553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-40
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-39
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	1e-38
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-38
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	9e-38
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	1e-37
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	6e-37
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	5e-36
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	5e-36
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	8e-35
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	9e-35
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-34
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	2e-34
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-34
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-34
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-33
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	2e-33
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	4e-32
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-32
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	6e-32
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-30
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	2e-30
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	2e-30
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	9e-29
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-28
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-27
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-27
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	2e-27
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-27
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-27
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-27
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	9e-27
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	2e-26
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-25
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	1e-24
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-24
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-23
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	6e-23
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-21
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-21
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	7e-21
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	7e-21
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-20
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	1e-20
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	6e-20
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-19
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	3e-19
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	1e-18
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	5e-18
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-17
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	4e-16
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	9e-15
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-14
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	3e-14
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	1e-12
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-12
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	7e-12
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	9e-08
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	2e-07
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	2e-07
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	5e-07
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	7e-07
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	4e-06
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	5e-06
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	8e-06
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	1e-05
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	8e-05
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.002
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	0.003
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	0.003
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.004

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  132 bits (334), Expect = 6e-40
 Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++GD G GK+  + R +  +F   +  TIG++        N  K++   WDTAGQE
Sbjct: 3   MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR 132
           +F  +   YY      I+++D+T   T+ N+   +        +   ++L GNK D++ R
Sbjct: 63  RFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR 122

Query: 133 QVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 171
            V A Q     K+  + + E SAK++ N  + F  LA+ +
Sbjct: 123 VVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  131 bits (331), Expect = 2e-39
 Identities = 55/169 (32%), Positives = 89/169 (52%), Gaps = 3/169 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            + K++I+G+ G GK++ + R     F+ +   TIGV+        +  K +   WDTAG
Sbjct: 6   TTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDV 129
           QE+F  L   YY   Q  I+++DVT R T+  +  W  +L   C   +I  +L GNK+D 
Sbjct: 66  QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 125

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 177
           +NR+V + + + F RK ++ + E SAK+    +  F  L  K+   P L
Sbjct: 126 ENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTPGL 174

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-38
 Identities = 140/167 (83%), Positives = 151/167 (90%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV+VGDGGTGKTTFVKRHLTGEFEKKY  T+GVEVHPL F TN G I+F  WDTAGQE
Sbjct: 4   FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ 133
           KFGGLRDGYYI  QCAIIMFDVT+R+TYKNVP WHRDL RVCENIPIVLCGNKVD+K+R+
Sbjct: 64  KFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRK 123

Query: 134 VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFV 180
           VKAK + FHRKKNLQYY+ISAKSNYNFEKPFL+LARKL GDPNL FV
Sbjct: 124 VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDPNLEFV 170

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  129 bits (325), Expect = 2e-38
 Identities = 50/165 (30%), Positives = 83/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FKL+++G+ G GK+  + R     +   Y  TIGV+        +   ++   WDT
Sbjct: 4   DY-LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY      II++DVT + ++  V  W +++ R     +  +L GNK D
Sbjct: 63  AGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCD 122

Query: 129 VKNRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYLARKL 171
           +K+++V    V         + + E SA  + N E  FL +AR++
Sbjct: 123 LKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  127 bits (320), Expect = 9e-38
 Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 4/168 (2%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYC 66
           +T DY  FKL+++GD G GKT  + R     F   +  TIG++        +  +I+   
Sbjct: 1   KTYDY-LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQI 59

Query: 67  WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGN 125
           WDTAGQE+F  +   YY      ++++D+T   ++ N+  W R++      ++  ++ GN
Sbjct: 60  WDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119

Query: 126 KVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K DV +++  +K+          +++ E SAK+N N E  F  LAR +
Sbjct: 120 KCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  127 bits (319), Expect = 1e-37
 Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           D+  FK+V++G+ G GKT  V+R   G F      TIGV+        N  K++   WDT
Sbjct: 3   DF-LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVD 128
           AGQE+F  +   YY      I+ +D+T   +++ +P             +  VL GNK+D
Sbjct: 62  AGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKID 121

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  R+  ++Q    F   +++ Y E SAK + N EK FL LA +L
Sbjct: 122 LAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 166

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  125 bits (313), Expect = 6e-37
 Identities = 48/163 (29%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE
Sbjct: 1   FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR 132
           +F  L   Y      A++++D+T   +++    W  D+      ++ I+L GNK D+ ++
Sbjct: 61  RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 120

Query: 133 QVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAG 173
           +  + +      ++ N+ + E SAK+ YN ++ F  +A  L G
Sbjct: 121 RQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 52/167 (31%), Positives = 85/167 (50%), Gaps = 4/167 (2%)

Query: 8   TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCW 67
           T D+  FK +++G+ GTGK+  + + +  +F+     TIGVE            ++   W
Sbjct: 1   TYDF-LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGN- 125
           DTAGQE+F  +   YY     A++++D+T+R TY  +  W  D      +NI I+LCGN 
Sbjct: 60  DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNK 119

Query: 126 -KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             +D        +   F ++  L + E SA +  N E+ F+  ARK+
Sbjct: 120 KDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  123 bits (308), Expect = 5e-36
 Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDT
Sbjct: 2   DY-LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE++  +   YY     A++++D+   LTY+NV  W ++L      NI I+L GNK D
Sbjct: 61  AGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 129 VKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++ +         F  K NL + E SA  + N E+ F  +  ++
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  119 bits (299), Expect = 8e-35
 Identities = 40/165 (24%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDT
Sbjct: 3   DY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNK 126
           AGQE++  +   YY      I+M+D+T   ++  V  W   +     +   + +V     
Sbjct: 62  AGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCD 121

Query: 127 VDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ +      +          +++E SAK N N ++ F  L   +
Sbjct: 122 MEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  119 bits (299), Expect = 9e-35
 Identities = 51/161 (31%), Positives = 89/161 (55%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK +I+GD G GK+  + +     F+  ++ TIGVE        +  +I+   WDTAGQE
Sbjct: 4   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 63

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            F  +   YY     A++++D+T R T+ ++ +W  D  +    N+ I+L GNK D+++R
Sbjct: 64  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 123

Query: 133 QVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   ++    F R+  L + E SAK+  N E+ F+  A+++
Sbjct: 124 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 42/162 (25%), Positives = 85/162 (52%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E
Sbjct: 4   YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ  I+++ +  + +++++      +   +  E +P++L GNKVD+++
Sbjct: 63  QFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLES 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  +         +    + E SAKS    ++ F  + R++
Sbjct: 123 EREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (297), Expect = 2e-34
 Identities = 54/165 (32%), Positives = 84/165 (50%), Gaps = 4/165 (2%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
            Y  FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDT
Sbjct: 2   SY-IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVD 128
           AGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D
Sbjct: 61  AGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++ ++    +    F  +  L + E SAK+  N E  FL  A+K+
Sbjct: 121 LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  117 bits (294), Expect = 5e-34
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 6/166 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
            S KLV++G+   GK++ V R ++ +F +  EPTIG          N   ++F  WDTAG
Sbjct: 2   TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV- 129
           QE+F  L   YY + Q A++++DVT   ++            +  ++I I L GNK+D+ 
Sbjct: 62  QERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDML 121

Query: 130 ----KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +  + +      +K L ++E SAK+  N    FL +  K+
Sbjct: 122 QEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-34
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 5/166 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWD 68
           D  +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WD
Sbjct: 4   DV-AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWD 62

Query: 69  TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGN-K 126
           TAGQE+F  +   YY      ++++DVT + ++ N+  W  ++      ++ ++L GN  
Sbjct: 63  TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKV 122

Query: 127 VDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                R VK +      ++  L + E SAK+  N +  F  +A++L
Sbjct: 123 DSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (290), Expect = 2e-33
 Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 3/163 (1%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             FKLV++G+   GK++ V R + G+F +  E TIG          +   ++F  WDTAG
Sbjct: 5   CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAG 64

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 130
           QE++  L   YY   Q AI+++D+T   ++            +   NI I L GNK D+ 
Sbjct: 65  QERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLA 124

Query: 131 NRQVKAKQVTFH--RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           N++    Q         +L + E SAK++ N  + F+ +A+KL
Sbjct: 125 NKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL 167

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (292), Expect = 2e-33
 Identities = 55/176 (31%), Positives = 85/176 (48%), Gaps = 15/176 (8%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEV----------HPLDFFTNC 59
           DY   KL+ +GD G GKTTF+ R+   +F  K+  T+G++            P       
Sbjct: 3   DY-LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61

Query: 60  GKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CEN 117
            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN
Sbjct: 62  FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121

Query: 118 IPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             IVL GNK D+ +++   ++       K  + Y+E SA +  N EK    L   +
Sbjct: 122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI 177

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (281), Expect = 4e-32
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GDGG GK++ + R++T +F+ +   TIGVE    D   +   +    WDTAGQE
Sbjct: 7   FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE 66

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGNKVD 128
           +F  LR  +Y    C ++ F V    +++N+  W ++     +     + P V+ GNK+D
Sbjct: 67  RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 126

Query: 129 VKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +  RQV  ++         +  Y+E SAK   N    F    R++
Sbjct: 127 ISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score =  112 bits (281), Expect = 5e-32
 Identities = 46/164 (28%), Positives = 82/164 (50%), Gaps = 5/164 (3%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
              K+++VG GG GK+    + +  EF + YEPT            +  +++    DTAG
Sbjct: 3   ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAG 61

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+
Sbjct: 62  QEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDL 121

Query: 130 KNRQVKAK--QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++++  +         + N+ Y E SAK+  N +K F  L R++
Sbjct: 122 EDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  112 bits (280), Expect = 6e-32
 Identities = 46/163 (28%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
             +KLV+VG GG GK+    + +   F  +Y+PTI           +         DTAG
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAG 60

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDV 129
           QE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+
Sbjct: 61  QEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL 120

Query: 130 KNRQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
             R V   +     R   + Y E SAK+    E  F  L R++
Sbjct: 121 AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 1e-30
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           SFK+V++G+G  GKT+ V R+   +F  K+  T+G             ++    WDTAGQ
Sbjct: 3   SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKN-VPTWHRDLCRVCENIPIVLCGNKVDVKN 131
           E+F  L   YY     AI+++D+T   +++            +   I + + GNK+D++ 
Sbjct: 63  ERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEK 122

Query: 132 RQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +  + Q   ++      ++Y  SAK N   E+ FL L +++
Sbjct: 123 ERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 2e-30
 Identities = 39/161 (24%), Positives = 70/161 (43%), Gaps = 3/161 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+ ++GD G GK++ + R +   F+    PTIG               +F  WDTAG E
Sbjct: 5   LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGN--KVDVK 130
           +F  L   YY     AII++D+T   T+  +             +I + + GN   +   
Sbjct: 65  RFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 124

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              ++     +    +  + E SAK+  N  + F+ ++R++
Sbjct: 125 REVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (269), Expect = 2e-30
 Identities = 51/163 (31%), Positives = 88/163 (53%), Gaps = 6/163 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +KLV++G GG GK+    + + G F +KY+PTI           +C +      DTAG E
Sbjct: 4   YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDCQQCMLEILDTAGTE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
           +F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   E++P++L GNK D+++
Sbjct: 63  QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122

Query: 132 RQVKAKQVTFH---RKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +V  K+   +   +  N  + E SAKS  N  + F  L R++
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  104 bits (258), Expect = 9e-29
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 2/161 (1%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+V+VG+G  GK++ ++R+  G F K Y+ TIGV+        N   +R   WDTAGQ
Sbjct: 2   AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR 132
           E+F  +   YY   Q  +++F  T R +++ + +W   +     +IP  L  NK+D+ + 
Sbjct: 62  EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 121

Query: 133 QV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                 +     ++  L++Y  S K + N  + F YLA K 
Sbjct: 122 SCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 162

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  102 bits (253), Expect = 6e-28
 Identities = 53/167 (31%), Positives = 86/167 (51%), Gaps = 6/167 (3%)

Query: 10  DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDT 69
           + P++KLV+VGDGG GK+    +     F   Y+PTI           +         DT
Sbjct: 1   NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLK-HTEIDNQWAILDVLDT 59

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV 127
           AGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV +  + P++L  NKV
Sbjct: 60  AGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKV 119

Query: 128 DVK-NRQV-KAKQVTFHRKKNLQYYEISAKS-NYNFEKPFLYLARKL 171
           D+   R+V + +      K N+ Y E SAK    N +K F  L R +
Sbjct: 120 DLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (253), Expect = 1e-27
 Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T +F  +Y PT+                    +DTAGQ
Sbjct: 3   TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGG-EPYTLGLFDTAGQ 61

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y      ++ F V +  +++NV           C   P +L G ++D+++
Sbjct: 62  EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRD 121

Query: 132 RQVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
                +++  +++               K ++Y E SA +    +  F       
Sbjct: 122 DPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAA 176

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 7/165 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +   +   +    WDTAGQE
Sbjct: 3   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQE 62

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV-----CENIPIVLCGNKVD 128
           +F  L   +Y    C +++FDVTA  T+K + +W  +          EN P V+ GNK+D
Sbjct: 63  RFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKID 122

Query: 129 VKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           ++NRQV  K+     + K N+ Y+E SAK   N E+ F  +AR  
Sbjct: 123 LENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 167

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 10/168 (5%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDF-FTNCGKIRFYCWDTAGQ 72
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +             WDTAGQ
Sbjct: 3   LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKV 127
           E+F  L   +Y    C ++++DVT   +++N+ +W  +          E  P V+ GNK+
Sbjct: 63  ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKI 122

Query: 128 DVKNRQVKAK----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           D +  +        Q       ++  +  SAK+  N +  F  +AR  
Sbjct: 123 DAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 170

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (250), Expect = 2e-27
 Identities = 47/162 (29%), Positives = 83/162 (51%), Gaps = 5/162 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           ++LV+VG GG GK+    + +   F   Y+PTI  + +      +    R    DTAGQE
Sbjct: 6   YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNK--VDV 129
           +FG +R+ Y   G+  +++F VT R +++ +  + R + R    +  P++L GNK  +D 
Sbjct: 65  EFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDH 124

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           + +  + +     R+  + Y E SAK   N ++ F  L R +
Sbjct: 125 QRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (249), Expect = 2e-27
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE
Sbjct: 3   FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE 62

Query: 74  KFGGL-RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
           +F       YY +    + ++D+T   ++ ++P W  +  +     +IP +L GNK D++
Sbjct: 63  RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 122

Query: 131 NRQVKAKQV--TFHRKKNLQYYEISAKS---NYNFEKPFLYLA 168
           +       +   F    ++  +E SAK+   N + E  F+ LA
Sbjct: 123 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  100 bits (249), Expect = 3e-27
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 6/161 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +++ + G GG GK++ V R + G F + Y PT+           +         DT G  
Sbjct: 3   YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNK--VD 128
           +F  ++      G   I+++ +T+R + + +   +  +C +    E+IPI+L GNK    
Sbjct: 62  QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 121

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++     R     + E SAK N+N ++ F  L  
Sbjct: 122 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLN 162

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 9e-27
 Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 17/175 (9%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K V+VGDG  GKT  +  + T  F  +Y PT+               +    WDTAGQ
Sbjct: 5   AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGK-PVNLGLWDTAGQ 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKN 131
           E +  LR   Y     ++I F + +  +++NV       +   C N PI+L G K+D+++
Sbjct: 64  EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 123

Query: 132 RQVKAKQVTFHR---------------KKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +   +++   +                  ++Y E SA +    +  F    R +
Sbjct: 124 DKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 178

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.2 bits (243), Expect = 2e-26
 Identities = 46/163 (28%), Positives = 82/163 (50%), Gaps = 5/163 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV+VG GG GK+    + +   F   Y+P    + +      +    R    DTAGQ
Sbjct: 6   THKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTAGQ 64

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
           E+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D++
Sbjct: 65  EEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 124

Query: 131 NRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           +++   +++   F    ++ Y+E SAK   N ++ F  L R +
Sbjct: 125 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 94.3 bits (233), Expect = 4e-25
 Identities = 33/164 (20%), Positives = 57/164 (34%), Gaps = 12/164 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           ++++VG    GKTT + +   GE       T    +           I F  WD  GQ+K
Sbjct: 2   RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNR 132
              L   Y+ + Q  I + D   R            +       +  +++  NK D+ N 
Sbjct: 57  IRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116

Query: 133 QVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              A+      +   R +N       A S     +   +L+ +L
Sbjct: 117 MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.9 bits (232), Expect = 1e-24
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 17/174 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KLVIVGDG  GKT  +  +   +F + Y PT+  E +  D   +  ++    WDTAG E
Sbjct: 3   KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      ++ F + +  + +N+P       +  C N+PI+L GNK D++N 
Sbjct: 62  DYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRND 121

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARKL 171
           +   +++   ++                   Y E SAK+     + F    R  
Sbjct: 122 EHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAA 175

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.7 bits (229), Expect = 3e-24
 Identities = 37/173 (21%), Positives = 64/173 (36%), Gaps = 17/173 (9%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K V+VGDG  GKT  +  +    F ++Y PT+              +     +DTAGQE
Sbjct: 10  LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGK-QYLLGLYDTAGQE 68

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNR 132
            +  LR   Y      +I F V    +++NV        +    N+P +L G ++D+++ 
Sbjct: 69  DYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 128

Query: 133 QVKAKQVTFHRK---------------KNLQYYEISAKSNYNFEKPFLYLARK 170
                ++   ++                   Y E SA +    +  F      
Sbjct: 129 PKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIA 181

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 90.9 bits (224), Expect = 1e-23
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 17/174 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           K+V+VGD   GKT  +       F + Y PT+  E +   F  +  +I    WDT+G   
Sbjct: 4   KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQ 133
           +  +R   Y      +I FD++   T  +V    +      C N  ++L G K D++   
Sbjct: 63  YDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV 122

Query: 134 VKAKQVTFHRKK---------------NLQYYEISAKSNYNFEKPFLYLARKLA 172
               +++ HR+                   Y E SA  + N  +   ++A    
Sbjct: 123 STLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLAC 176

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 89.2 bits (220), Expect = 6e-23
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++++G    GKTT + +   G+       T    V           ++F  WD  GQ+
Sbjct: 13  MRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTYKNVKFNVWDVGGQD 67

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN 131
           K   L   YY   Q  I + D   R            +    E  +  I++  NK D+ +
Sbjct: 68  KIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPD 127

Query: 132 RQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +      +T  R +N       A S     +   +L    
Sbjct: 128 AMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 85.5 bits (210), Expect = 1e-21
 Identities = 36/163 (22%), Positives = 68/163 (41%), Gaps = 11/163 (6%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L +VG   +GKTTFV    +G+F +   PT+G  +  +      G +    WD  GQ 
Sbjct: 3   MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKI----TKGNVTIKLWDIGGQP 58

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN 131
           +F  + + Y       + M D   +   +       +L      + IP+++ GNK D+  
Sbjct: 59  RFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPG 118

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
                  ++   ++  + + +  Y IS K   N +    +L +
Sbjct: 119 ALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQ 161

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 40/162 (24%), Positives = 62/162 (38%), Gaps = 5/162 (3%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S K+ I+G    GK++   + + G+F   Y+PTI      L    N  +      DTAGQ
Sbjct: 4   SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKL-ITVNGQEYHLQLVDTAGQ 62

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVT--ARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV- 129
           +++      Y I     I+++ VT         V             IPI+L GNK D+ 
Sbjct: 63  DEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLH 122

Query: 130 -KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
            +      +        N  + E SAK N      F  +  +
Sbjct: 123 MERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 83.9 bits (206), Expect = 7e-21
 Identities = 24/166 (14%), Positives = 55/166 (33%), Gaps = 12/166 (7%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
             +++++G    GKTT +K+  + +                         +   WD  GQ
Sbjct: 16  EVRILLLGLDNAGKTTLLKQLASEDISHITPT-----QGFNIKSVQSQGFKLNVWDIGGQ 70

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK 130
            K       Y+ +    I + D   R  ++       +L        +P+++  NK D+ 
Sbjct: 71  RKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLL 130

Query: 131 NRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                ++      +   R +  Q    SA +    +    ++ + +
Sbjct: 131 TAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.5 bits (205), Expect = 7e-21
 Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 7/163 (4%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL I G  G GK+  V R LT  F  +Y+PT+  E       T   ++          +
Sbjct: 3   VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL--ESTYRHQATIDDEVVSMEILDTAGQ 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKV--DV 129
           +    R+G+   G+  ++++D+T R +++ V      L  + +  N+ ++L GNK   D 
Sbjct: 61  EDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDH 120

Query: 130 KNRQVKAKQVTFHRKKNLQYYEISAKSNY-NFEKPFLYLARKL 171
             +    +      +    +YE SA +   N  + F  L R++
Sbjct: 121 SRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 83.5 bits (205), Expect = 1e-20
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE      PTIG  V  L        ++   WD  GQ 
Sbjct: 18  LRILILGLDGAGKTTILYRLQIGEVVTTK-PTIGFNVETLS----YKNLKLNVWDLGGQT 72

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN 131
                   YY      I + D T +            + +    ++  +++  NK D   
Sbjct: 73  SIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPG 132

Query: 132 -----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   K   +   + ++      SA       +   +L   +
Sbjct: 133 ALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 177

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.1 bits (204), Expect = 1e-20
 Identities = 28/169 (16%), Positives = 58/169 (34%), Gaps = 16/169 (9%)

Query: 12  PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG 71
           P  +L ++GD  +GK++ + R LTG ++   +         +        +       A 
Sbjct: 4   PELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAP 63

Query: 72  QEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKV 127
             K       +       I +F +    +++ V   H  L  +       + + L G + 
Sbjct: 64  DAK-------FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQD 116

Query: 128 DVKNRQVKAK-----QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
            +     +       +      K   YYE  A    N ++ F  +A+K+
Sbjct: 117 RISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 165

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 6e-20
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR----FYCWDT 69
           +++V++G+ G GK+T              +  +  E          G+         W+ 
Sbjct: 4   YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWEN 63

Query: 70  AGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
            G+ ++              +      A     +         R  E+IPI+L GNK D+
Sbjct: 64  KGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDL 123

Query: 130 KNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
              +    ++        + ++ E SA   +N ++ F  + R++
Sbjct: 124 VRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 26/166 (15%), Positives = 56/166 (33%), Gaps = 12/166 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +L+++G    GKTT +K+    + +     TI   +            +   WD  GQ+
Sbjct: 3   LRLLMLGLDNAGKTTILKKFNGEDVD-----TISPTLGFNIKTLEHRGFKLNIWDVGGQK 57

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   Y+      I + D   R   ++     + L          +++  NK D+  
Sbjct: 58  SLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPG 117

Query: 132 R-----QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA 172
                   +A ++   R  + +    SA +  +      +L   ++
Sbjct: 118 ALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 3e-19
 Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 2/160 (1%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
           +K++++G  G GK+   +     E   + E         +        +  Y        
Sbjct: 2   YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 61

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV--KN 131
           ++              +            +         R  +++PI+L GNK D+    
Sbjct: 62  RWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 121

Query: 132 RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                +        + ++ E SA  ++N +  F  + R++
Sbjct: 122 EVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 78.1 bits (191), Expect = 1e-18
 Identities = 30/165 (18%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++IVG    GKTT + +     F           +            RF  WD  GQE
Sbjct: 16  HKVIIVGLDNAGKTTILYQ-----FSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQE 70

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN 131
                 + YY + +  I++ D T R            +    +     +++  NK DVK 
Sbjct: 71  SLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 130

Query: 132 RQV-----KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
                   +  ++T  +          A +     +   ++  +L
Sbjct: 131 CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 75.9 bits (185), Expect = 5e-18
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 12/165 (7%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            +++I+G  G GKTT + R   GE       T    +           ++F  WD  G  
Sbjct: 6   MRILILGLDGAGKTTILYRLQVGEV-----VTTIPTIGFNVETVTYKNLKFQVWDLGGLT 60

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKN 131
                   YY +    I + D   R       +    +          +V+  NK D++ 
Sbjct: 61  SIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQ 120

Query: 132 RQVKAKQVT-----FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               ++          + +  Q ++ SA      ++   +L   L
Sbjct: 121 AMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.7 bits (182), Expect = 2e-17
 Identities = 31/169 (18%), Positives = 60/169 (35%), Gaps = 19/169 (11%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
           KL+ +G    GKTT +              T+    HP       G I+F  +D  G  +
Sbjct: 2   KLLFLGLDNAGKTTLLHMLKNDRL-----ATLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNR 132
              L   Y+      + + D      +         L  + E  ++P V+ GNK+D  N 
Sbjct: 57  ARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA 116

Query: 133 QVKAKQVT------------FHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
             +A+  +               ++ ++ +  S      + + F +L++
Sbjct: 117 VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 71.3 bits (173), Expect = 4e-16
 Identities = 27/178 (15%), Positives = 53/178 (29%), Gaps = 24/178 (13%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + KLV +G    GKTT +         +          HP         + F  +D  G 
Sbjct: 13  TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTL-----HPTSEELTIAGMTFTTFDLGGH 67

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVK 130
            +   +   Y       + + D                L       N+PI++ GNK+D  
Sbjct: 68  IQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRP 127

Query: 131 NRQVKAK-----------------QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               + +                  +     + L+ +  S      + + F ++A+ +
Sbjct: 128 EAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 185

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.0 bits (165), Expect = 9e-15
 Identities = 25/168 (14%), Positives = 50/168 (29%), Gaps = 19/168 (11%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K++++G G +GK+TF+K+          +PT G+  +  +         F   D  GQ 
Sbjct: 3   VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIHEYDFEIKNVP----FKMVDVGGQR 55

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE------------NIPIV 121
                    +      + +   +              L                 N+ I+
Sbjct: 56  SERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSII 115

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 169
           L  NK D+   +V+   +  +  +                + F    R
Sbjct: 116 LFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRR 163

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.5 bits (164), Expect = 2e-14
 Identities = 25/142 (17%), Positives = 46/142 (32%), Gaps = 20/142 (14%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + +L+++G G +GK+T VK+            T G+            K+ F+ +D  GQ
Sbjct: 6   THRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQV----DKVNFHMFDVGGQ 57

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPI 120
                     +      I +   ++             L             R    I +
Sbjct: 58  RDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 117

Query: 121 VLCGNKVDVKNRQVKAKQVTFH 142
           +L  NK D+   +V A +    
Sbjct: 118 ILFLNKQDLLAEKVLAGKSKIE 139

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.9 bits (162), Expect = 3e-14
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 46/191 (24%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+TF+K+           PT G+  +P D  +      F   D  GQ 
Sbjct: 3   LKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYPFDLQSVI----FRMVDVGGQR 56

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC------------RVCENIPIV 121
                    + +    + +  ++              +                +N  ++
Sbjct: 57  SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVI 116

Query: 122 LCGNKVDVKNRQV----------------------------KAKQVTFHRKKNLQYYEIS 153
           L  NK D+   ++                                +     K +  +   
Sbjct: 117 LFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTC 176

Query: 154 AKSNYNFEKPF 164
           A    N    F
Sbjct: 177 ATDTENIRFVF 187

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.3 bits (150), Expect = 1e-12
 Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK 74
            ++ VG   +GKT    R LTG++ +  + +I           N G           +  
Sbjct: 2   AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 75  FGGLRDGYYIHGQCAIIMFDVTARL-----TYKNVPTWHRDLCRVCENIPIVLCGNKVDV 129
              L D +    +  + + D  A         + +     D   +  +  +++  NK D+
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 130 KN----RQVKAK------QVTFHRKKNLQYYEISAKSNYNFEKP 163
                 + ++ +       +   R       + S+ +     K 
Sbjct: 121 AMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKK 164

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 60.1 bits (144), Expect = 4e-12
 Identities = 30/166 (18%), Positives = 54/166 (32%), Gaps = 14/166 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            K+VI G    GK++ +   L G          G     L    +   +  +  DTAG  
Sbjct: 2   MKVVIAGRPNAGKSSLLNA-LAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 60

Query: 74  KFGGLRDGYYI--------HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
           +     +   I             + M D T          W   + R+   +PI +  N
Sbjct: 61  EASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRN 120

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
           K D+    +   +V  H         +SA++    +    +L + +
Sbjct: 121 KADITGETLGMSEVNGH-----ALIRLSARTGEGVDVLRNHLKQSM 161

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 60.0 bits (144), Expect = 7e-12
 Identities = 27/169 (15%), Positives = 53/169 (31%), Gaps = 22/169 (13%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            KL+++G G +GK+T VK+      +  +E   G+      F        F  +D  GQ 
Sbjct: 3   VKLLLLGAGESGKSTIVKQ-----MKIIHEAGTGIVETHFTFKDLH----FKMFDVGGQR 53

Query: 74  KFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL------------CRVCENIPIV 121
                    +      I    ++              +             +   +  I+
Sbjct: 54  SERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII 113

Query: 122 LCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK 170
           L  NK D+   ++K   +T    +          + Y  +  F  L ++
Sbjct: 114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAY-IQCQFEDLNKR 161

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 48.1 bits (113), Expect = 9e-08
 Identities = 25/166 (15%), Positives = 52/166 (31%), Gaps = 17/166 (10%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           + K+ IVG    GK+T     +  +      P  G    P+D        ++   DTAG 
Sbjct: 8   AIKVAIVGRPNVGKSTLFNA-ILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGL 66

Query: 73  EKFGGLRDGYYIHGQCA----------IIMFDVTARLTYKNVPTWHRDLCRVCENIPIVL 122
            +   +                     +++  + A             L        +V+
Sbjct: 67  RRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVV 126

Query: 123 CGNKVDVKNRQVKAKQVTFHRKKNLQYYE------ISAKSNYNFEK 162
                 V +R+ +  + T   ++ L + +       SA   +N ++
Sbjct: 127 FNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDR 172

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 47.0 bits (110), Expect = 2e-07
 Identities = 28/179 (15%), Positives = 48/179 (26%), Gaps = 13/179 (7%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG------ 71
           +VG    GK++ +   +T    K            L       + RF   D  G      
Sbjct: 6   LVGYPNAGKSSLLAA-MTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS 64

Query: 72  -QEKFGG--LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
             +  G   LR          ++        T + +              P ++  NKVD
Sbjct: 65  EGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVD 124

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
           +   +          ++ L    +SA +          L   +   P     E P   P
Sbjct: 125 LLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPP---PEMPKPVP 180

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.1 bits (110), Expect = 2e-07
 Identities = 26/161 (16%), Positives = 47/161 (29%), Gaps = 7/161 (4%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
           +IVG    GK+T   + L  + +   E   GV   P+          F   DT G     
Sbjct: 4   LIVGRPNVGKSTLFNK-LVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNP 62

Query: 77  GLRDGYYIHGQC------AIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK 130
                  +          A ++  V                      +  +L  NK +  
Sbjct: 63  QDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENL 122

Query: 131 NRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171
               +  +   +     +   +SA+ N N +     + +KL
Sbjct: 123 REFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKL 163

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.6 bits (109), Expect = 5e-07
 Identities = 26/167 (15%), Positives = 45/167 (26%), Gaps = 26/167 (15%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           ++I G   +GKT+ +   LT +          V         +         D  G  K 
Sbjct: 6   IIIAGPQNSGKTSLLTL-LTTD-----SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKL 59

Query: 76  GGLRDGYYIHGQCAIIMF-----DVTARLTYKNVPTWHRDLCRVCE-----NIPIVLCGN 125
                 Y       +                     +  D+  + E      I I++  N
Sbjct: 60  RYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN 119

Query: 126 KVDVKNRQVKAK----------QVTFHRKKNLQYYEISAKSNYNFEK 162
           K ++   +  +K          +V   RKK+L   E         E 
Sbjct: 120 KSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAEN 166

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 45.5 bits (106), Expect = 7e-07
 Identities = 32/182 (17%), Positives = 49/182 (26%), Gaps = 16/182 (8%)

Query: 13  SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
           S  + IVG    GK+T +   L G       P        L      G+ +    DT G 
Sbjct: 5   SGFVAIVGKPNVGKSTLLNN-LLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGL 63

Query: 73  EKFGGLRDGYYIHGQCAIIMFDVTARLT-------YKNVPTWHRDLCRVCENIPIVLCGN 125
            K       +        +                        R L  +   +PI+L GN
Sbjct: 64  HKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGN 123

Query: 126 KVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPAL 185
           K+D      +A +         +   +SA       +    L   +         E P  
Sbjct: 124 KLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP--------EGPFF 175

Query: 186 AP 187
            P
Sbjct: 176 YP 177

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.4 bits (104), Expect = 4e-06
 Identities = 26/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)

Query: 7   QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNCGKIRF 64
           + +D     + + G+ G+GK++F+        E++     GV    ++   + +      
Sbjct: 50  KEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNV 109

Query: 65  YCWDTAGQEKFGGLRDGY---YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIP 119
             WD  G        D Y       +    +     R           D+ +        
Sbjct: 110 VFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK-----NDIDIAKAISMMKKE 164

Query: 120 IVLCGNKVD-VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
                 KVD     +   +  TF ++K LQ  +I       F +
Sbjct: 165 FYFVRTKVDSDITNEADGEPQTFDKEKVLQ--DIRLNCVNTFRE 206

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 42.7 bits (99), Expect = 5e-06
 Identities = 34/155 (21%), Positives = 58/155 (37%), Gaps = 12/155 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG-QE 73
           ++VIVG    GK+T + R L  E         G     +        I F   DTAG + 
Sbjct: 2   RMVIVGKPNVGKSTLLNR-LLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60

Query: 74  KFGGLRDGYYIH------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
           +   L +   I        +  I++F + A      +    R +    +N   ++  NKV
Sbjct: 61  ETNDLVERLGIERTLQEIEKADIVLFVLDA---SSPLDEEDRKILERIKNKRYLVVINKV 117

Query: 128 DVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK 162
           DV  +  + +++      +    +ISA      EK
Sbjct: 118 DVVEKINE-EEIKNKLGTDRHMVKISALKGEGLEK 151

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 42.6 bits (99), Expect = 8e-06
 Identities = 24/171 (14%), Positives = 46/171 (26%), Gaps = 14/171 (8%)

Query: 18  IVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG 77
           +VG    GK+T +   ++    K  +      V  L          F   D  G  +   
Sbjct: 6   LVGFPSVGKSTLLSV-VSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH 64

Query: 78  LRDG-------------YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCG 124
              G               +H      +        Y  +     +        P ++  
Sbjct: 65  QGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVA 124

Query: 125 NKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP 175
           NK+D+       +        +   + ISA +     +    +A +L   P
Sbjct: 125 NKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLENTP 175

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 30/179 (16%), Positives = 52/179 (29%), Gaps = 17/179 (9%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
            IVG    GK+T + + L G+             H +      G  +    DT G     
Sbjct: 9   AIVGRPNVGKSTLLNK-LLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 77  GLRDGYYIHGQCAIIMFDV--------TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD 128
                  ++   +  + DV          R T  +    ++        I  V   + V 
Sbjct: 68  KRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQ 127

Query: 129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 187
            K   +   Q    +   L    ISA++  N +     + + L         E+    P
Sbjct: 128 EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP--------EATHHFP 178

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.7 bits (91), Expect = 8e-05
 Identities = 17/169 (10%), Positives = 51/169 (30%), Gaps = 12/169 (7%)

Query: 15  KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGK-------IRFYCW 67
           ++ + G    GK++F+   +  +   +     G       +  N            F   
Sbjct: 25  EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKV 84

Query: 68  DTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKV 127
             + +E +G + + Y    +    +  +       +              IP+++   K 
Sbjct: 85  SKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKA 144

Query: 128 DVKNRQVKAKQVTFHRKK-----NLQYYEISAKSNYNFEKPFLYLARKL 171
           D   +    K     R+        +    S+++    ++ +  + + +
Sbjct: 145 DKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI 193

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 16/101 (15%), Positives = 28/101 (27%), Gaps = 1/101 (0%)

Query: 16  LVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF 75
           L      GTGKTT + + L      +      ++    D   +      Y    AG  + 
Sbjct: 5   LAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQT 63

Query: 76  GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE 116
                  +          ++  +     + T   DL  V  
Sbjct: 64  IVASQQRWALMTETPDEEELDLQFLASRMDTSKLDLILVEG 104

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 18/162 (11%), Positives = 43/162 (26%), Gaps = 13/162 (8%)

Query: 14  FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQE 73
            ++   G    GK++ +      +   +   T G       F    GK           E
Sbjct: 17  IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAE 76

Query: 74  KFGGLRDGYYIH--------GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGN 125
               ++  +                ++  +  R   K++     +         +VL   
Sbjct: 77  VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK 136

Query: 126 KVDVKNRQVKA-----KQVTFHRKKNLQYYEISAKSNYNFEK 162
              + +   KA     ++       ++Q    S+      +K
Sbjct: 137 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDK 178

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 33/175 (18%), Positives = 56/175 (32%), Gaps = 35/175 (20%)

Query: 17  VIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG 76
           +  G    GK+T + R LTG+ + +     GV    ++             D  G     
Sbjct: 4   IFAGRSNVGKSTLIYR-LTGK-KVRRGKRPGVTRKIIEIEWKN----HKIIDMPGFGFMM 57

Query: 77  GLRDGYYIHGQC---------------AIIMFDVTARLTYKNVPTWHRDLCRVCE----- 116
           GL        +                A+++ D  A            ++    E     
Sbjct: 58  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 117

Query: 117 ---NIPIVLCGNKVD-VKNRQVKAKQVTFHRKKNL-----QYYEISAKSNYNFEK 162
              +IP ++  NK+D +KN Q     +    +  L      +  ISAK   N E+
Sbjct: 118 RELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 172

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ 72
          K++I G+ G GKTT V + +     K     IG     +       +  F    T G+
Sbjct: 2  KIIITGEPGVGKTTLV-KKIVERLGK---RAIGFWTEEVRDPETKKRTGFRIITTEGK 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	100.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	100.0
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	100.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	100.0
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	100.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	100.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	100.0
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	100.0
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.97
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.97
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.97
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.97
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.97
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.97
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.96
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.96
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.94
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.93
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.92
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.91
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.91
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.9
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.9
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.9
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.88
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.88
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.85
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.85
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.84
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.82
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.82
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.8
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.8
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.76
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.73
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.72
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.71
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.71
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.69
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.68
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.62
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.56
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.53
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.51
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.37
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.26
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.22
d2awna2	232	Maltose transport protein MalK, N-terminal domain	99.17
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.16
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.15
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.12
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	99.08
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	99.08
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.07
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.06
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.05
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	99.03
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.02
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.0
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	98.94
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.93
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	98.91
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.88
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.84
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	98.84
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.83
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.83
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.82
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	98.81
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.71
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.69
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.42
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.4
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.26
d1okkd2	207	GTPase domain of the signal recognition particle r	98.24
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.23
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.22
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.12
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.07
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.04
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.95
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.94
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.91
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.9
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.87
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.84
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.8
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.79
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.76
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.74
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.71
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.65
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.65
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.63
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.62
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.61
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.57
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.56
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.56
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.54
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.54
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.52
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.51
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.5
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.47
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.41
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.41
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.4
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.39
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.39
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.35
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.34
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.34
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.31
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.3
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.24
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.21
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.2
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.17
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.15
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.14
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.02
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.02
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.01
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.0
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.93
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.89
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.89
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.88
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.86
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.82
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.8
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.78
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.77
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.75
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.72
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.71
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.71
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.63
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.62
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.6
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.57
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.56
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.54
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.51
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.49
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.47
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.45
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.44
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.43
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.42
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.42
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.37
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.36
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.28
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.26
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.22
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.19
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.19
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.15
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.14
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.07
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.07
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.06
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.01
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.0
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.0
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.97
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.91
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.88
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.88
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.86
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.85
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.73
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	95.58
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.57
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.53
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.48
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.47
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	95.36
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.34
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	95.3
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.21
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	95.08
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.07
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.02
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.02
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	95.0
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.87
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.77
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.7
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.64
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	94.6
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.4
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	94.36
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.04
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	93.88
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.7
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.52
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	93.37
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.36
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.3
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.67
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	92.42
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	92.01
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	91.72
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.53
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.07
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	89.85
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.59
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.57
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	88.94
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	88.83
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	88.79
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	88.56
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	88.22
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	88.16
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.49
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	87.44
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	85.74
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	83.69
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	83.0
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	82.88
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	82.6
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	82.21
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	81.88
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.59

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.6e-37  Score=218.32  Aligned_cols=165  Identities=84%  Similarity=1.393  Sum_probs=149.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++|+.+.+...+.+|.+.++.......++..+.+.+||++|+..+..++..++++++++++|
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   82 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIM   82 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeccccccccccccccccccccccccccccceecchhcccccchhhc
Confidence            48999999999999999999999999888899999999888888888899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ||++++.||+.+..|+..+....++.|+++|+||+|+..+....+...++...+++|+++||++|.|++++|.+|++.+.
T Consensus        83 ~d~~~~~Sf~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  162 (170)
T d1i2ma_          83 FDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  162 (170)
T ss_dssp             EETTSGGGGTTHHHHHHHHHHHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHHHHhhccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            99999999999999999988877899999999999998877777777888899999999999999999999999999998


Q ss_pred             CCCCC
Q 027607          173 GDPNL  177 (221)
Q Consensus       173 ~~~~~  177 (221)
                      .+|.+
T Consensus       163 ~~~~~  167 (170)
T d1i2ma_         163 GDPNL  167 (170)
T ss_dssp             TCTTC
T ss_pred             cCCCC
Confidence            87764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=7.1e-35  Score=206.59  Aligned_cols=161  Identities=31%  Similarity=0.618  Sum_probs=147.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+++|++|||||||+++|+.+.+...+.++.+.+.........+..+.+.+||++|+..+..++..+++.++++++|
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v   81 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLV   81 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEE
Confidence            48999999999999999999999999888999999899988888899999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ||+++..+++.+..|+..+....++.|+++|+||+|+.+. ... .+...++...+++++++||++|.|++++|++|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~i~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1          82 FSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             EeccchhhhhhcccccccccccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            9999999999999999999888889999999999998653 333 45667888899999999999999999999999998


Q ss_pred             HhC
Q 027607          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +++
T Consensus       162 ~lq  164 (164)
T d1z2aa1         162 HLQ  164 (164)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            764

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.1e-33  Score=201.45  Aligned_cols=161  Identities=27%  Similarity=0.567  Sum_probs=144.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.+............+.+.+|||||++.+..++..+++.+|++++|
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv   84 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILM   84 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            58999999999999999999999999888899999999998998888899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||++++.++..+..|+..+.... ...|+++|+||.|+.+...  ..+...++...+++++++||++|.|++++|++|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~  164 (169)
T d3raba_          85 YDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVD  164 (169)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHH
T ss_pred             EECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHH
Confidence            99999999999998887776543 5789999999999876432  34556788888999999999999999999999999


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+.+
T Consensus       165 ~i~e  168 (169)
T d3raba_         165 VICE  168 (169)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            8765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-34  Score=201.24  Aligned_cols=162  Identities=30%  Similarity=0.536  Sum_probs=140.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.+........++..+.+.+||++|+..+..++..+++++|++++
T Consensus         2 y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   81 (167)
T d1z08a1           2 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAIL   81 (167)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEE
T ss_pred             ceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEE
Confidence            46899999999999999999999999999999999999999899999889999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++++.||+.+..|+..+.... ...|+++|+||+|+... .+ ..+...++...+++++++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~  161 (167)
T d1z08a1          82 VYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLC  161 (167)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHH
T ss_pred             EEeCCchhHHHhhhhhhhhcccccccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHH
Confidence            999999999999999988776543 57889999999998653 33 4566788999999999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       162 ~~i~~  166 (167)
T d1z08a1         162 KRMIE  166 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhh
Confidence            98865

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=200.64  Aligned_cols=162  Identities=28%  Similarity=0.521  Sum_probs=146.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      +++++||+|+|.+|||||||+++|+.+.+...+.++.+..........+.....+.+||++|++.+..++..+++.++++
T Consensus         1 ~~k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~   80 (167)
T d1z0ja1           1 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA   80 (167)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred             CCceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccce
Confidence            35789999999999999999999999999999999999999888888888889999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      ++|||++++.+|..+..|+..+.... ...|+++|+||+|+.+. .. ..+...++...+++|+++||++|.|++++|.+
T Consensus        81 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~  160 (167)
T d1z0ja1          81 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE  160 (167)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred             EEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            99999999999999999987776554 68899999999998653 33 34567888999999999999999999999999


Q ss_pred             HHHHH
Q 027607          167 LARKL  171 (221)
Q Consensus       167 l~~~l  171 (221)
                      |++.+
T Consensus       161 l~~~i  165 (167)
T d1z0ja1         161 ISRRI  165 (167)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            99976

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-33  Score=199.90  Aligned_cols=162  Identities=33%  Similarity=0.522  Sum_probs=143.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .|.+||+++|++|||||||+++++.+.+...+.++.+.. +......++..+.+.+||++|.+.+...+..+++.+++++
T Consensus         2 ~pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~l   80 (169)
T d1x1ra1           2 LPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDS-YLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFL   80 (169)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEE-EEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEE
T ss_pred             CCcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeec-cccccccccccccccccccccccccccchhhhhhhccEEE
Confidence            578999999999999999999999999988888888744 4556677888999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCC-ChHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY-NFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~-gv~~~~~  165 (221)
                      +|||++++.||..+..|+..+....  ...|+++|+||+|+... .+ .+++.+++..++++|+++||+++. |++++|.
T Consensus        81 lv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~  160 (169)
T d1x1ra1          81 IVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFH  160 (169)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHH
T ss_pred             EecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHH
Confidence            9999999999999999999886653  47899999999998664 33 356778999999999999999886 9999999


Q ss_pred             HHHHHHhC
Q 027607          166 YLARKLAG  173 (221)
Q Consensus       166 ~l~~~l~~  173 (221)
                      .|++.+.+
T Consensus       161 ~l~~~i~~  168 (169)
T d1x1ra1         161 DLVRVIRQ  168 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998754

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=201.86  Aligned_cols=165  Identities=30%  Similarity=0.527  Sum_probs=144.8

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ++.+.+||+|+|++|||||||+++|+.+.+...+.++.. +.....+.+++..+.+.+||++|.+.+...+..+++++++
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~   80 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE-DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHG   80 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCcccccccc-cceeeEeccCCeeeeeeccccccccccccccchhhcccee
Confidence            356789999999999999999999999999888777764 5556677888889999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      +++|||+++..+|..+..|+..+...  ..+.|+++|+||+|+... .. ..+...++...+++|++|||++|.|++++|
T Consensus        81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f  160 (173)
T d2fn4a1          81 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF  160 (173)
T ss_dssp             EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred             eeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHH
Confidence            99999999999999999999887654  358899999999998653 22 346778889999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 027607          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      +.|++.+.+.
T Consensus       161 ~~l~~~i~k~  170 (173)
T d2fn4a1         161 EQLVRAVRKY  170 (173)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999987553

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.6e-34  Score=202.06  Aligned_cols=161  Identities=35%  Similarity=0.629  Sum_probs=145.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..++++++++++|
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v   84 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILT   84 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEe
Confidence            58999999999999999999999999888888999899999999999999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +|+++..++..+..|+..+.... ...|+++|+||+|+.+.. + ..++..++...++++++|||++|.|++++|.+|++
T Consensus        85 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1          85 YDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             eecccchhhhhhhhhhhhhcccccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            99999999999999998876653 578999999999986533 3 34566788889999999999999999999999998


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+..
T Consensus       165 ~l~~  168 (171)
T d2ew1a1         165 RLIS  168 (171)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-33  Score=198.97  Aligned_cols=159  Identities=30%  Similarity=0.566  Sum_probs=144.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      |||+|+|.+|||||||+++|+.+.+...+.++.+..........++..+.+.+||++|++.+...+..++..++++++||
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~   80 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVY   80 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEee
Confidence            69999999999999999999999999999999998888888888888999999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc-c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~-~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      |+++..++..+..|+..+.... .+.|+++|+||+|+.+. . ...+...++...+++|++|||++|.|++++|.+|+++
T Consensus        81 d~~~~~s~~~i~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~  160 (164)
T d1yzqa1          81 DITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA  160 (164)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             ccccccchhhhHhhHHHHHHhcCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHh
Confidence            9999999999999998877654 68999999999998643 3 3346678899999999999999999999999999997


Q ss_pred             Hh
Q 027607          171 LA  172 (221)
Q Consensus       171 l~  172 (221)
                      |.
T Consensus       161 l~  162 (164)
T d1yzqa1         161 LP  162 (164)
T ss_dssp             SC
T ss_pred             hC
Confidence            64

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=198.86  Aligned_cols=161  Identities=25%  Similarity=0.341  Sum_probs=142.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|+.+.+...+.++.+.++ .....+++..+.+.+||++|.+.+..++..++..+|+++
T Consensus         2 ~k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~i   80 (167)
T d1xtqa1           2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI   80 (167)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEE
T ss_pred             CcceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhh
Confidence            3678999999999999999999999999888888888664 456778888999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||++++.+|..+..|+..+....  .+.|+++|+||+|+... .+ .++...++.+.+++|+++||++|.|++++|..
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~  160 (167)
T d1xtqa1          81 LVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRR  160 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHH
T ss_pred             hhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHH
Confidence            9999999999999999998887653  57899999999998653 33 34567889999999999999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.+.
T Consensus       161 li~~~~  166 (167)
T d1xtqa1         161 IILEAE  166 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998753

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=100.00  E-value=2.8e-33  Score=199.04  Aligned_cols=162  Identities=30%  Similarity=0.525  Sum_probs=140.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .|-+||+|+|++|||||||+++|+.+.+...+.+|.+.++ .....+++..+.+.+||++|++.+..++..+++++|+++
T Consensus         2 ~~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~i   80 (168)
T d1u8za_           2 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL   80 (168)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeE
Confidence            4779999999999999999999999999888888888654 456678888999999999999999888899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||+++..+++.+..|+..+....  .+.|+++|+||+|+.+. .+ .++...++...+++++++||++|.|++++|.+
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~  160 (168)
T d1u8za_          81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD  160 (168)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred             EEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999999998887653  58899999999998653 23 34567888999999999999999999999999


Q ss_pred             HHHHHhC
Q 027607          167 LARKLAG  173 (221)
Q Consensus       167 l~~~l~~  173 (221)
                      |++.+..
T Consensus       161 l~~~i~~  167 (168)
T d1u8za_         161 LMREIRA  167 (168)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHC
Confidence            9998754

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-33  Score=197.51  Aligned_cols=159  Identities=34%  Similarity=0.571  Sum_probs=143.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++++.+.+...+.++.+.+.......+++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv   83 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV   83 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEE
Confidence            58999999999999999999999999888888888888888999999999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||+++..++..+..|+..+.... ...|+++++||.|+.... . ..++..++...++++++|||++|.|++++|.+|++
T Consensus        84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~  163 (166)
T d1z0fa1          84 YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK  163 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             eccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999998886654 578999999999986533 2 24567888889999999999999999999999998


Q ss_pred             HH
Q 027607          170 KL  171 (221)
Q Consensus       170 ~l  171 (221)
                      .+
T Consensus       164 ~i  165 (166)
T d1z0fa1         164 KI  165 (166)
T ss_dssp             HH
T ss_pred             Hh
Confidence            76

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.2e-33  Score=199.90  Aligned_cols=165  Identities=27%  Similarity=0.488  Sum_probs=139.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      +++++||+|+|.+|||||||+++|+.+.+...+.++.+ +........++..+.+.+||++|++.+..++..+++.++++
T Consensus         2 ~p~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~   80 (183)
T d1mh1a_           2 SPQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS   80 (183)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred             CceeEEEEEECCCCCCHHHHHHHHHhCCCCccccccee-eceeeeeeccCcceEEEeecccccccchhhhhhccccccee
Confidence            46789999999999999999999999999888888887 44556677788899999999999999999999999999999


Q ss_pred             EEEEECCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEec
Q 027607           90 IIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEIS  153 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s  153 (221)
                      ++|||+++..+|+.+.. |...+.....+.|+++|+||+|+....              ...+...++...+ +.|++||
T Consensus        81 ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~S  160 (183)
T d1mh1a_          81 LICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECS  160 (183)
T ss_dssp             EEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECC
T ss_pred             eeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcC
Confidence            99999999999999876 555556666789999999999975432              1223445555555 7899999


Q ss_pred             ccCCCChHHHHHHHHHHHhCCC
Q 027607          154 AKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      |++|.|++++|..|++.+++.|
T Consensus       161 Ak~~~~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         161 ALTQRGLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             TTTCTTHHHHHHHHHHHHSCCC
T ss_pred             CCCCcCHHHHHHHHHHHHcCCC
Confidence            9999999999999999887654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-33  Score=197.63  Aligned_cols=163  Identities=28%  Similarity=0.539  Sum_probs=143.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ++++||+|+|++|||||||+++|+.+.+...+.++.+..+.. .....+..+.+.+||++|.+.+...+..+++.+++++
T Consensus         1 m~e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~i   79 (166)
T d1ctqa_           1 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRK-QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL   79 (166)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeecc-ceeeeceeeeeeeeeccCccccccchhhhhhcccccc
Confidence            467999999999999999999999999988888888865554 4556777899999999999999989899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|+|++++.+|+.+..|+..+....  .+.|+++|+||+|+..+.... +...++...+++|+++||++|.|++++|.+|
T Consensus        80 iv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i  159 (166)
T d1ctqa_          80 CVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL  159 (166)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred             eeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHH
Confidence            9999999999999999999887653  578999999999997665544 5567888899999999999999999999999


Q ss_pred             HHHHhCC
Q 027607          168 ARKLAGD  174 (221)
Q Consensus       168 ~~~l~~~  174 (221)
                      ++.+.++
T Consensus       160 ~~~i~~~  166 (166)
T d1ctqa_         160 VREIRQH  166 (166)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhC
Confidence            9988654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.2e-33  Score=197.96  Aligned_cols=168  Identities=33%  Similarity=0.588  Sum_probs=151.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+.+||+|+|++|||||||+++|.++.+...+.++.+.......+.+++..+.+.+|||+|++.+..++..++.++++++
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii   84 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVI   84 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence            56799999999999999999999999998888889988888888888988999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccH-HHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      +|||+++..++..+..|+..+....  ...|+++++||.|...+.+.. +...++...++.++++||++|.|++++|++|
T Consensus        85 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l  164 (177)
T d1x3sa1          85 LVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEEL  164 (177)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHH
T ss_pred             EEEECCCccccccchhhhhhhcccccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHH
Confidence            9999999999999999999887653  468889999999987665544 5567888999999999999999999999999


Q ss_pred             HHHHhCCCCCc
Q 027607          168 ARKLAGDPNLH  178 (221)
Q Consensus       168 ~~~l~~~~~~~  178 (221)
                      ++.+.++|.+.
T Consensus       165 ~~~l~~~p~l~  175 (177)
T d1x3sa1         165 VEKIIQTPGLW  175 (177)
T ss_dssp             HHHHHTSGGGT
T ss_pred             HHHHccCcccc
Confidence            99999988643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-33  Score=198.88  Aligned_cols=161  Identities=27%  Similarity=0.517  Sum_probs=141.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ++++||+++|++|||||||+++|+.+.+...+.++.+ +.+.....+++..+.+.+||++|++.+...+..+++++++++
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~i   79 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI   79 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-eeeeeeeecCcceEeeccccCCCccccccchHHHhhccccee
Confidence            4789999999999999999999999999888888887 455667778888999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc--cccHHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      +|||++++.+|..+..|+..+....  ++.|+++|+||+|+...  ....+...++...+++++++||++|.|++++|..
T Consensus        80 lv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~  159 (167)
T d1kaoa_          80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE  159 (167)
T ss_dssp             EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred             eeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHH
Confidence            9999999999999999998876543  57899999999998653  2334566788888999999999999999999999


Q ss_pred             HHHHHh
Q 027607          167 LARKLA  172 (221)
Q Consensus       167 l~~~l~  172 (221)
                      |++.+.
T Consensus       160 i~~~i~  165 (167)
T d1kaoa_         160 IVRQMN  165 (167)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            999764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-32  Score=199.04  Aligned_cols=163  Identities=24%  Similarity=0.372  Sum_probs=138.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      +....+||+|+|.+|||||||+++|+.+.+...+.+|.+ +.........+..+.+.+||++|++.+..++..+++.+|+
T Consensus         5 ~~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~-~~~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~   83 (185)
T d2atxa1           5 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV   83 (185)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSC-CCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcee-eeeeEEEeeCCceEEeecccccccchhhhhhhhcccccce
Confidence            467889999999999999999999999999888888886 4455566777888999999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHH-HHHHHHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcC-CeEEEe
Q 027607           89 AIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEI  152 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~-~~~~~~  152 (221)
                      +++|||++++.||+.... |...+.....+.|+++|+||+|+.+.             .+ .++..+++...+ +.|++|
T Consensus        84 ~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~  163 (185)
T d2atxa1          84 FLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC  163 (185)
T ss_dssp             EEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEEC
T ss_pred             eeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEe
Confidence            999999999999987654 55555556678999999999998541             22 234456676666 789999


Q ss_pred             cccCCCChHHHHHHHHHHHh
Q 027607          153 SAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       153 s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ||++|.|++++|+.++++++
T Consensus       164 SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         164 SALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             cCCCCcCHHHHHHHHHHHHc
Confidence            99999999999999999874

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-32  Score=196.60  Aligned_cols=160  Identities=29%  Similarity=0.455  Sum_probs=135.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      +.||+|+|++|||||||+++|+.+.+...+.++.+ .........++..+.+.+||++|++.+..++..+++++|++++|
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMC   80 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eeccccccccccceeeeccccCccchhcccchhhcccchhhhhh
Confidence            47999999999999999999999999888888877 45556677788889999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHH-HHHHhhcCCCCEEEEEeCCCcCCcc--------------ccHHHHHHHhhcC-CeEEEecccC
Q 027607           93 FDVTARLTYKNVPTWH-RDLCRVCENIPIVLCGNKVDVKNRQ--------------VKAKQVTFHRKKN-LQYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~-~~~~~~~~~~p~ivv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~s~~~  156 (221)
                      ||++++.||+.+..|+ ..+....++.|+++|+||+|+....              ...+...++...+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt  160 (177)
T d1kmqa_          81 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKT  160 (177)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred             cccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCC
Confidence            9999999999877654 4455556789999999999986422              1234456666666 5899999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027607          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~  173 (221)
                      |.|++++|+.+++++++
T Consensus       161 ~~gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         161 KDGVREVFEMATRAALQ  177 (177)
T ss_dssp             CTTHHHHHHHHHHHHHC
T ss_pred             CcCHHHHHHHHHHHHhC
Confidence            99999999999998764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.8e-33  Score=196.03  Aligned_cols=161  Identities=32%  Similarity=0.579  Sum_probs=139.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      ++++||+|+|++|||||||+++|+.+.+...+.++.+..+ ......++..+.+.+||++|+..+...+..+++++++++
T Consensus         1 mr~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i   79 (167)
T d1c1ya_           1 MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA   79 (167)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeE
Confidence            4689999999999999999999999999888888887444 456677888999999999999999999999999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccc--cHHHHHHHhh-cCCeEEEecccCCCChHHHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV--KAKQVTFHRK-KNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~-~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +|||++++.+|+.+..|+..+...  .++.|+++|+||+|+.....  ..+...++.. .+++|+++||++|.|++++|.
T Consensus        80 lv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~  159 (167)
T d1c1ya_          80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY  159 (167)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred             EeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHH
Confidence            999999999999999999888664  35789999999999875433  2334455555 578999999999999999999


Q ss_pred             HHHHHHh
Q 027607          166 YLARKLA  172 (221)
Q Consensus       166 ~l~~~l~  172 (221)
                      +|++.+.
T Consensus       160 ~l~~~i~  166 (167)
T d1c1ya_         160 DLVRQIN  166 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.8e-33  Score=200.85  Aligned_cols=170  Identities=28%  Similarity=0.517  Sum_probs=150.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+.+..+.+.+|||+|++.+..++..++++++++++|
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v   85 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIV   85 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence            48999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||+++..++.....|+..+... ....|+++|+||+|+.+..  ...+...++...++.++++||++|.|++++|++|++
T Consensus        86 ~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~  165 (194)
T d2bcgy1          86 YDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR  165 (194)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHH
Confidence            9999999999999888877654 4688999999999987633  233456778888999999999999999999999999


Q ss_pred             HHhCCCCCccccC
Q 027607          170 KLAGDPNLHFVES  182 (221)
Q Consensus       170 ~l~~~~~~~~~~e  182 (221)
                      .+........+++
T Consensus       166 ~i~~~~~~~~~~~  178 (194)
T d2bcgy1         166 QIKESMSQQNLNE  178 (194)
T ss_dssp             HHHHHCCHHHHHT
T ss_pred             HHHHHhhhcccCc
Confidence            9877665444443

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-33  Score=197.52  Aligned_cols=159  Identities=25%  Similarity=0.433  Sum_probs=137.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      .++||+|+|.+|||||||+++|+.+.+...+.+|.+..+ .....+++..+.+.+||++|.+.+...+..+++.+|++++
T Consensus         1 n~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~il   79 (171)
T d2erxa1           1 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL   79 (171)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEE
Confidence            368999999999999999999999999888888888544 4456778888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh---cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV---CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~---~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |||++++.++..+..|+..+...   ..+.|+++|+||+|+... .+. .+...++...+++++++||++|.|++++|..
T Consensus        80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~  159 (171)
T d2erxa1          80 VYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQE  159 (171)
T ss_dssp             EEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHH
T ss_pred             EeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHH
Confidence            99999999999999998877553   257899999999998643 333 4567888999999999999999999999999


Q ss_pred             HHHHH
Q 027607          167 LARKL  171 (221)
Q Consensus       167 l~~~l  171 (221)
                      |++.+
T Consensus       160 l~~~~  164 (171)
T d2erxa1         160 LLNLE  164 (171)
T ss_dssp             HHHTC
T ss_pred             HHHHH
Confidence            99854

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-32  Score=195.28  Aligned_cols=158  Identities=19%  Similarity=0.260  Sum_probs=123.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      |||+|+|++|||||||++++....+. ...++.+ ..+...+.+++..+.+.+||++|++.+..++..+++.+|++++||
T Consensus         2 fKi~lvG~~~vGKTsLi~~~~~~~~~-~~~~~~~-~~~~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~   79 (168)
T d2gjsa1           2 YKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAG-HTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVY   79 (168)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTC----------C-EEEEEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHhCCccC-CcCCeee-eeecceeeccccccceeeeecccccccceecccchhhhhhhceec
Confidence            79999999999999999998776543 3344444 344556777888999999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      |++++.+++.+..|+..+....  ...|+++|+||+|+... .+ ..+...++...+++|+++||++|.|++++|.+|++
T Consensus        80 d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~  159 (168)
T d2gjsa1          80 SVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVR  159 (168)
T ss_dssp             ETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHH
T ss_pred             cccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHH
Confidence            9999999999999999887653  46899999999998754 32 34566788899999999999999999999999998


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+..
T Consensus       160 ~i~~  163 (168)
T d2gjsa1         160 QIRL  163 (168)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-32  Score=196.20  Aligned_cols=161  Identities=30%  Similarity=0.559  Sum_probs=138.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+|+|++|||||||+++++.+.+...+.++.+ ........+++..+.+.+||++|...+...+..+++.+|++++
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   82 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLL   82 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCC-EEEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccc-cceeeeeeecccccccccccccccccccccccccccccceEEE
Confidence            459999999999999999999999998888888877 5556677788888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc--cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYL  167 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l  167 (221)
                      |||.+++.||+.+..|+..+...  ....|+++|+||+|+...  ....+...++...+++|++|||++|.|++++|..|
T Consensus        83 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l  162 (171)
T d2erya1          83 VFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHEL  162 (171)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHH
T ss_pred             eeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHH
Confidence            99999999999999999887654  357899999999998654  23345678889999999999999999999999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++.+.+
T Consensus       163 ~~~i~k  168 (171)
T d2erya1         163 VRVIRK  168 (171)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-32  Score=194.81  Aligned_cols=161  Identities=33%  Similarity=0.581  Sum_probs=141.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|++|||||||+++|+++.+...+.++.+.+.....+..++..+.+.+||++|++.+...+..+++.++++++|
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v   83 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLV   83 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEE
Confidence            58999999999999999999999999888888888888888888898899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc--ccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ--VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||++++.||..+..|+..+.... .+.|+++|+||+|+.+..  .......+....+.+++++||++|.|++++|.++.+
T Consensus        84 ~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~  163 (175)
T d2f9la1          84 YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILT  163 (175)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHH
Confidence            99999999999999998887764 578999999999987542  233445677788899999999999999999999999


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+.+
T Consensus       164 ~i~~  167 (175)
T d2f9la1         164 EIYR  167 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-32  Score=194.76  Aligned_cols=163  Identities=33%  Similarity=0.598  Sum_probs=146.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.+............+.+.+||++|++.+..++..++++++++++
T Consensus         5 ~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   84 (170)
T d1r2qa_           5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIV   84 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             eEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEE
Confidence            46899999999999999999999999999999999999888888888889999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCc-ccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNR-QVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~-~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |+|.++..++..+..|+..+... .++.|+++|+||+|+... .+. ++...++...+++|+++||++|.|++++|.+|+
T Consensus        85 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~  164 (170)
T d1r2qa_          85 VYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIA  164 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHhhhhhhccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHH
Confidence            99999999999999988887654 468999999999998654 333 346678888899999999999999999999999


Q ss_pred             HHHhCC
Q 027607          169 RKLAGD  174 (221)
Q Consensus       169 ~~l~~~  174 (221)
                      +.+.++
T Consensus       165 ~~i~~n  170 (170)
T d1r2qa_         165 KKLPKN  170 (170)
T ss_dssp             HTSCCC
T ss_pred             HHHhhC
Confidence            877553

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-32  Score=195.21  Aligned_cols=163  Identities=24%  Similarity=0.397  Sum_probs=138.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+ ..........+..+.+.+||++|++.+..++..+++++|++++
T Consensus         2 ~~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il   80 (191)
T d2ngra_           2 QTIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLV   80 (191)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCcee-eecceeEeeCCceeeeeccccccchhhhhhhhhcccccceeec
Confidence            469999999999999999999999999888888887 4455566677788999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHH-HHHHHhhcCCCCEEEEEeCCCcCCcc-------------c-cHHHHHHHhhc-CCeEEEeccc
Q 027607           92 MFDVTARLTYKNVPTW-HRDLCRVCENIPIVLCGNKVDVKNRQ-------------V-KAKQVTFHRKK-NLQYYEISAK  155 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~-~~~~~~~~~~~p~ivv~nK~D~~~~~-------------~-~~~~~~~~~~~-~~~~~~~s~~  155 (221)
                      |||++++.||+.+..| ...+.....+.|+++|+||+|+.+..             + ..++..++... ++.|+++||+
T Consensus        81 v~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk  160 (191)
T d2ngra_          81 CFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSAL  160 (191)
T ss_dssp             EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTT
T ss_pred             ccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCC
Confidence            9999999999999764 45455556789999999999985421             2 23445666664 5789999999


Q ss_pred             CCCChHHHHHHHHHHHhCCC
Q 027607          156 SNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~  175 (221)
                      +|.|++++|+.+++.+.+.+
T Consensus       161 ~~~~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         161 TQKGLKNVFDEAILAALEPP  180 (191)
T ss_dssp             TCTTHHHHHHHHHHHHTSCC
T ss_pred             CCcCHHHHHHHHHHHHhcCc
Confidence            99999999999999876654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-32  Score=194.68  Aligned_cols=162  Identities=31%  Similarity=0.547  Sum_probs=140.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+|+|++|||||||+++++.+.+...+.++.+.+............+.+.+||++|+..+..++..++..+|++++
T Consensus         2 y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~il   81 (173)
T d2a5ja1           2 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALL   81 (173)
T ss_dssp             EEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEE
Confidence            35899999999999999999999999988888888888888888888888999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc--cccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR--QVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||++++.+|+.+..|+..+.... .+.|+++|+||+|+...  ....+...++...+++++++||++|.|++++|.+|+
T Consensus        82 v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~  161 (173)
T d2a5ja1          82 VYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTA  161 (173)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHH
T ss_pred             EEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHH
Confidence            999999999999999998886653 68899999999997653  233456688888899999999999999999999999


Q ss_pred             HHHhC
Q 027607          169 RKLAG  173 (221)
Q Consensus       169 ~~l~~  173 (221)
                      +.+.+
T Consensus       162 ~~i~~  166 (173)
T d2a5ja1         162 KEIYR  166 (173)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-32  Score=193.48  Aligned_cols=161  Identities=32%  Similarity=0.582  Sum_probs=143.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      .+||+|+|.+|||||||+++|+.+.+...+.++.+.+........+.....+.+||++|++.+..++..+++.++++++|
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v   84 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLV   84 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEE
Confidence            48999999999999999999999999888899999888888888888899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      +|.+++.++..+..|+..+.... .+.|+++|+||+|+.....  ......++...+++++++||++|.|++++|.+|.+
T Consensus        85 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~  164 (174)
T d2bmea1          85 YDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCAR  164 (174)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHH
T ss_pred             EecccchhHHHHhhhhcccccccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHH
Confidence            99999999999999998876654 5799999999999855332  23445788888999999999999999999999999


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+.+
T Consensus       165 ~i~~  168 (174)
T d2bmea1         165 KILN  168 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.1e-32  Score=192.58  Aligned_cols=161  Identities=27%  Similarity=0.550  Sum_probs=138.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      -+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||||++.+..++..++++++++++|
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v   81 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILV   81 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence            48999999999999999999999999888899999999999999999999999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcccc-HHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVK-AKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ||.+++.+++.+..|+....... ...|++++++|.|...+... .+...++...+++++++||++|.|++++|.+|++.
T Consensus        82 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~  161 (166)
T d1g16a_          82 YDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL  161 (166)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             EECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHH
Confidence            99999999999998887776654 57788999999998765544 44557888889999999999999999999999998


Q ss_pred             HhC
Q 027607          171 LAG  173 (221)
Q Consensus       171 l~~  173 (221)
                      +.+
T Consensus       162 i~~  164 (166)
T d1g16a_         162 IQE  164 (166)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-32  Score=192.93  Aligned_cols=160  Identities=33%  Similarity=0.597  Sum_probs=143.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      ..+||+|+|++|||||||+++|+.+.+...+.++.+.++....+...+..+.+.+||++|++.+..++..++..+|++++
T Consensus         2 ~~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~il   81 (170)
T d1ek0a_           2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALV   81 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred             cEEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEE
Confidence            35899999999999999999999999999999999999888888999999999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCc----c-ccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR----Q-VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~----~-~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      |||++++.+|..+..|+....... ...|+++|+||+|+.+.    . ...+..+++...+++|+++||++|.|++++|.
T Consensus        82 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~  161 (170)
T d1ek0a_          82 VYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFL  161 (170)
T ss_dssp             EEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHH
T ss_pred             EEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHH
Confidence            999999999999999987765543 57899999999997532    2 23456788889999999999999999999999


Q ss_pred             HHHHHH
Q 027607          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      .|++.|
T Consensus       162 ~i~~~i  167 (170)
T d1ek0a_         162 GIGEKI  167 (170)
T ss_dssp             HHHTTS
T ss_pred             HHHHHh
Confidence            998764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.7e-32  Score=194.85  Aligned_cols=161  Identities=29%  Similarity=0.571  Sum_probs=115.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      -+||+|+|.+|||||||+++|+.+.+...+.++.+.+.....+.+++..+.+.+||+||++.+..++..+++.++++++|
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v   85 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLV   85 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEE
Confidence            48999999999999999999999888888888888888888999998899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccc--cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR  169 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~  169 (221)
                      ||++++.++..+..|+..+... ..+.|+++|+||.|......  ..+...++...++++++|||++|.|++++|.+|++
T Consensus        86 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~  165 (173)
T d2fu5c1          86 YDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR  165 (173)
T ss_dssp             EETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHH
T ss_pred             EECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            9999999999999998888654 36799999999999865332  33456778888999999999999999999999999


Q ss_pred             HHhC
Q 027607          170 KLAG  173 (221)
Q Consensus       170 ~l~~  173 (221)
                      .+..
T Consensus       166 ~i~~  169 (173)
T d2fu5c1         166 DIKA  169 (173)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-31  Score=189.41  Aligned_cols=160  Identities=29%  Similarity=0.601  Sum_probs=133.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      .+||+|+|++|||||||+++++.+.+. ..+.++.+.+.........+..+.+.+|||+|++.+..++..+++++|++++
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~   85 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLL   85 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEE
Confidence            589999999999999999999998875 4456667888888888889989999999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-CCCCEEEEEeCCCcCCcc-c-cHHHHHHHhhcCCeEEEecccCCCChHHHHHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQ-V-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA  168 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~  168 (221)
                      |||.+++.++..+..|+....... ...|+++|+||.|..++. + ..++..++...+++++++||++|.|++++|.+|+
T Consensus        86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~  165 (170)
T d2g6ba1          86 LYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIA  165 (170)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHH
T ss_pred             EecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHH
Confidence            999999999999998888776554 578999999999987643 3 3455678888899999999999999999999999


Q ss_pred             HHHh
Q 027607          169 RKLA  172 (221)
Q Consensus       169 ~~l~  172 (221)
                      +.+.
T Consensus       166 ~~i~  169 (170)
T d2g6ba1         166 KELK  169 (170)
T ss_dssp             HHHH
T ss_pred             HHcC
Confidence            9875

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-32  Score=191.37  Aligned_cols=159  Identities=28%  Similarity=0.413  Sum_probs=135.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||+++|+.+.+...+.+|.+..+.. ....++..+.+.+||++|.+.+. .+..+++.++++++|
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~-~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv   79 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLV   79 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc-cccccccceEEEEeecccccccc-cchhhhcccccceee
Confidence            6899999999999999999999999999999998866544 45567788999999999987664 456688999999999


Q ss_pred             EECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCC-hHHHHHHH
Q 027607           93 FDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYN-FEKPFLYL  167 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~g-v~~~~~~l  167 (221)
                      ||++++.++..+..|+......  ..+.|+++|+||+|+... .+ .+++..++...+++|+++||++|.| ++++|..|
T Consensus        80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l  159 (168)
T d2atva1          80 YDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL  159 (168)
T ss_dssp             EETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHH
T ss_pred             cccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHH
Confidence            9999999999999887665443  358999999999999653 33 3466788899999999999999985 99999999


Q ss_pred             HHHHhC
Q 027607          168 ARKLAG  173 (221)
Q Consensus       168 ~~~l~~  173 (221)
                      ++.+.+
T Consensus       160 ~~~i~~  165 (168)
T d2atva1         160 CREVRR  165 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            997753

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-31  Score=191.60  Aligned_cols=161  Identities=35%  Similarity=0.675  Sum_probs=142.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|.+|||||||+++|+++.+...+.++.+.++........+..+.+.+||++|.......+..++..++++++|+
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   82 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVF   82 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEE
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEee
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccHH-HHHHH-hhcCCeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKAK-QVTFH-RKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~~-~~~~~-~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |.++..++..+..|+..+....     .+.|+++|+||+|+.++....+ ...++ ...++++++|||++|.|++++|++
T Consensus        83 d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~  162 (184)
T d1vg8a_          83 DVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQT  162 (184)
T ss_dssp             ETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHH
T ss_pred             cccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHH
Confidence            9999999999999998876542     3689999999999977655544 33444 445789999999999999999999


Q ss_pred             HHHHHhCC
Q 027607          167 LARKLAGD  174 (221)
Q Consensus       167 l~~~l~~~  174 (221)
                      |++.+.++
T Consensus       163 l~~~i~~~  170 (184)
T d1vg8a_         163 IARNALKQ  170 (184)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99977553

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4e-31  Score=188.86  Aligned_cols=163  Identities=32%  Similarity=0.637  Sum_probs=140.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI   90 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i   90 (221)
                      .+-|||+|+|++|||||||+++++.+.+...+.++.+...........+..+.+.+||++|.......+..++..+++++
T Consensus         4 ~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i   83 (174)
T d1wmsa_           4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL   83 (174)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEE
Confidence            35689999999999999999999999999889999998888888888888999999999999988888899999999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCccccH-HHHHHHhhc-CCeEEEecccCCCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQVKA-KQVTFHRKK-NLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~-~~~~~~~s~~~~~gv~~~  163 (221)
                      +++|.++..+++.+..|+..+....     ...|+++|+||+|+.++.... +...++... .++|+++||++|.|++++
T Consensus        84 ~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~  163 (174)
T d1wmsa_          84 LTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAA  163 (174)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHH
T ss_pred             EEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHH
Confidence            9999999999999999998876542     468999999999997755444 455677665 589999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |++|++.++.
T Consensus       164 f~~l~~~il~  173 (174)
T d1wmsa_         164 FEEAVRRVLA  173 (174)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999998864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.3e-31  Score=188.87  Aligned_cols=161  Identities=27%  Similarity=0.570  Sum_probs=124.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEec-CcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      -+||+++|++|||||||+++|+.+.+...+.++.+.+......... .....+.+||++|++.+...+..+++.++++++
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~il   81 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVL   81 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEE
Confidence            4899999999999999999999999988888888766666655544 345789999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhhc-----CCCCEEEEEeCCCcCCcc--cc-HHHHHHHhhcC-CeEEEecccCCCChHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ--VK-AKQVTFHRKKN-LQYYEISAKSNYNFEK  162 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~~-----~~~p~ivv~nK~D~~~~~--~~-~~~~~~~~~~~-~~~~~~s~~~~~gv~~  162 (221)
                      |||+++..+|+.+..|+..+....     .+.|+++|+||+|+.+..  .. .+..+++...+ ++++++||++|.|+++
T Consensus        82 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e  161 (175)
T d1ky3a_          82 VYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDT  161 (175)
T ss_dssp             EEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHH
T ss_pred             EeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHH
Confidence            999999999999999998876542     478999999999986532  33 34556677764 7899999999999999


Q ss_pred             HHHHHHHHHhC
Q 027607          163 PFLYLARKLAG  173 (221)
Q Consensus       163 ~~~~l~~~l~~  173 (221)
                      +|.+|++.+.+
T Consensus       162 ~f~~l~~~~l~  172 (175)
T d1ky3a_         162 AFEEIARSALQ  172 (175)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999997754

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=7.3e-31  Score=185.89  Aligned_cols=157  Identities=31%  Similarity=0.582  Sum_probs=136.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-ccccccccccEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-LRDGYYIHGQCAI   90 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-~~~~~~~~~d~~i   90 (221)
                      +.+||+++|++|||||||+++|+.+.+...+.++.+.........+......+.+||++|...... .+..+++++|+++
T Consensus         1 r~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i   80 (165)
T d1z06a1           1 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV   80 (165)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceE
Confidence            358999999999999999999999999998899999888888888999999999999999876654 4567899999999


Q ss_pred             EEEECCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccC---CCChHHH
Q 027607           91 IMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKS---NYNFEKP  163 (221)
Q Consensus        91 ~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~---~~gv~~~  163 (221)
                      +|||++++.+|+.+..|+..+....  .+.|+++|+||+|+.+. .+ .++..+++..++++++++||++   +.|++++
T Consensus        81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~  160 (165)
T d1z06a1          81 FVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAI  160 (165)
T ss_dssp             EEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHH
T ss_pred             EEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHH
Confidence            9999999999999999999887653  57899999999998653 33 3446688999999999999987   5599999


Q ss_pred             HHHHH
Q 027607          164 FLYLA  168 (221)
Q Consensus       164 ~~~l~  168 (221)
                      |++||
T Consensus       161 F~~lA  165 (165)
T d1z06a1         161 FMTLA  165 (165)
T ss_dssp             HHHHC
T ss_pred             HHHhC
Confidence            98874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-30  Score=186.72  Aligned_cols=160  Identities=24%  Similarity=0.376  Sum_probs=134.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEE
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIM   92 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v   92 (221)
                      ++||+++|++|||||||+++++.+.+...+.++.+ ........+++..+.+.+||++|++.+...+..+++.+|++++|
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv   80 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVF-ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLIC   80 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSE-EEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCcee-ecccccccccceEEeeccccccccccccccccchhhhhhhhhee
Confidence            57999999999999999999999999888888876 44555667788899999999999999999999999999999999


Q ss_pred             EECCChhhhccHHHHHHH-HHhhcCCCCEEEEEeCCCcCCc-------------cc-cHHHHHHHhhcC-CeEEEecccC
Q 027607           93 FDVTARLTYKNVPTWHRD-LCRVCENIPIVLCGNKVDVKNR-------------QV-KAKQVTFHRKKN-LQYYEISAKS  156 (221)
Q Consensus        93 ~d~~~~~s~~~~~~~~~~-~~~~~~~~p~ivv~nK~D~~~~-------------~~-~~~~~~~~~~~~-~~~~~~s~~~  156 (221)
                      ||++++.||+.+..|+.. +.....+.|+++|+||+|+...             .+ ..+...++...+ ..|++|||++
T Consensus        81 ~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~  160 (179)
T d1m7ba_          81 FDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ  160 (179)
T ss_dssp             EETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTT
T ss_pred             eecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCC
Confidence            999999999988765544 4555679999999999997531             12 234556776665 6899999999


Q ss_pred             CC-ChHHHHHHHHHHHhC
Q 027607          157 NY-NFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~-gv~~~~~~l~~~l~~  173 (221)
                      |. |++++|+.+++.+++
T Consensus       161 ~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         161 SENSVRDIFHVATLACVN  178 (179)
T ss_dssp             BHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHhc
Confidence            98 599999999998865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-31  Score=193.10  Aligned_cols=161  Identities=34%  Similarity=0.569  Sum_probs=138.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecC----------cEEEEEEEecCCccccccccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC----------GKIRFYCWDTAGQEKFGGLRDGY   82 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~i~~~D~~g~~~~~~~~~~~   82 (221)
                      .+||+|+|++|||||||+++|+.+.+...+.++.+.++....+.++.          ..+.+.+|||+|++.+..++..+
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~   84 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAF   84 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHH
Confidence            58999999999999999999999998888888887777666655433          34689999999999999999999


Q ss_pred             cccccEEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCC
Q 027607           83 YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNY  158 (221)
Q Consensus        83 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~  158 (221)
                      +++++++++|||+++..+++.+..|+..+...  ....|+++|+||+|+... .+ ..+...++...+++++++||++|.
T Consensus        85 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~  164 (186)
T d2f7sa1          85 FRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQ  164 (186)
T ss_dssp             HTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTB
T ss_pred             HhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCC
Confidence            99999999999999999999999998876544  256889999999998653 23 345668888899999999999999


Q ss_pred             ChHHHHHHHHHHHhC
Q 027607          159 NFEKPFLYLARKLAG  173 (221)
Q Consensus       159 gv~~~~~~l~~~l~~  173 (221)
                      |++++|.+|++.+.+
T Consensus       165 ~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         165 NVEKAVETLLDLIMK  179 (186)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=185.04  Aligned_cols=160  Identities=20%  Similarity=0.312  Sum_probs=130.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccC-CcccCCcceeeeeeEEEecCcEEEEEEEecCC---cccccccccccccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFE-KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAG---QEKFGGLRDGYYIHGQ   87 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g---~~~~~~~~~~~~~~~d   87 (221)
                      .-|||+++|++|||||||+++|+.+.+. ....++.+.+.+...+.+++....+.+||+++   ++++  ++..+++.+|
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~   79 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGD   79 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCS
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccc
Confidence            3589999999999999999998877653 33445666677778888888899999999765   4433  4567889999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCc-cc-cHHHHHHHhhcCCeEEEecccCCCChHHH
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNR-QV-KAKQVTFHRKKNLQYYEISAKSNYNFEKP  163 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~-~~-~~~~~~~~~~~~~~~~~~s~~~~~gv~~~  163 (221)
                      ++++|||+++..++..+..|+..+...  ..+.|+++|+||+|+... .+ ..++.+++...+++|+++||++|.|++++
T Consensus        80 ~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~  159 (172)
T d2g3ya1          80 AYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL  159 (172)
T ss_dssp             EEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred             eeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHH
Confidence            999999999999999999998887654  358999999999998653 23 34556788889999999999999999999


Q ss_pred             HHHHHHHHhC
Q 027607          164 FLYLARKLAG  173 (221)
Q Consensus       164 ~~~l~~~l~~  173 (221)
                      |..|++.+..
T Consensus       160 f~~l~~~i~~  169 (172)
T d2g3ya1         160 FEGIVRQVRL  169 (172)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.97  E-value=1.8e-30  Score=183.67  Aligned_cols=155  Identities=23%  Similarity=0.416  Sum_probs=129.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+++|++|||||||+++|..+.+...+.+|.+.+......    +.+.+.+||++|++.+...+..++..++++++
T Consensus         1 ~e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~~~~~----~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~   76 (164)
T d1zd9a1           1 EEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK----GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVY   76 (164)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE----TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeeeeeee----eeEEEEEeeccccccccccccccccccchhhc
Confidence            47999999999999999999999999888888888876654432    56889999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |||+++..++.....|+..+...  .++.|+++|+||.|+.+.....+..     ..+...++.++++||++|.|++++|
T Consensus        77 v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~  156 (164)
T d1zd9a1          77 MVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL  156 (164)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             ccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHH
Confidence            99999999999988888777543  3689999999999987543333222     2233456789999999999999999


Q ss_pred             HHHHHH
Q 027607          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      ++|.+.
T Consensus       157 ~~l~~~  162 (164)
T d1zd9a1         157 QWLIQH  162 (164)
T ss_dssp             HHHHHT
T ss_pred             HHHHHc
Confidence            999874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.97  E-value=1.1e-29  Score=179.84  Aligned_cols=157  Identities=17%  Similarity=0.262  Sum_probs=124.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+++|++|||||||+++|..+.+ ..+.++.+.....    +..+++.+.+||++|++.++..+..++..++++++
T Consensus         1 k~~ki~ivG~~~~GKTsLi~~l~~~~~-~~~~~t~~~~~~~----~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~   75 (165)
T d1ksha_           1 RELRLLMLGLDNAGKTTILKKFNGEDV-DTISPTLGFNIKT----LEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIW   75 (165)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCCC-SSCCCCSSEEEEE----EEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHcCCCC-CcccceEeeeeee----ccccccceeeeecCcchhhhhHHHhhhhhhhccee
Confidence            579999999999999999999776554 4556666654443    34466899999999999999999999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHHH-----HhhcCCeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTF-----HRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      |+|+++..++.....++.....  ...+.|+++|+||+|+.+.....+....     .....+.+++|||++|.|+.++|
T Consensus        76 v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~  155 (165)
T d1ksha_          76 VVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGI  155 (165)
T ss_dssp             EEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHH
T ss_pred             eeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHH
Confidence            9999999998887766655433  2368999999999999765444333222     22335679999999999999999


Q ss_pred             HHHHHHHhC
Q 027607          165 LYLARKLAG  173 (221)
Q Consensus       165 ~~l~~~l~~  173 (221)
                      +||.+++..
T Consensus       156 ~~l~~~i~~  164 (165)
T d1ksha_         156 DWLLDDISS  164 (165)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            999998764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.6e-29  Score=179.22  Aligned_cols=157  Identities=21%  Similarity=0.370  Sum_probs=127.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      +.|++||+++|++|||||||+++++.+.+.. +.++.+. .+...+.+++..+.+.+|||+|+..+     .+++.+|++
T Consensus         2 ~~p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~-~~~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~   74 (175)
T d2bmja1           2 SIPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESE-QYKKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAV   74 (175)
T ss_dssp             CCCEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCE-EEEEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEE
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccce-eEEEEeecCceEEEEEEeeccccccc-----cccccccee
Confidence            4578999999999999999999999998754 4455543 44566778888999999999997653     478899999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHhhc----CCCCEEEEEeCCCcCC---cccc-HHHHHHH-hhcCCeEEEecccCCCCh
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCRVC----ENIPIVLCGNKVDVKN---RQVK-AKQVTFH-RKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~~~----~~~p~ivv~nK~D~~~---~~~~-~~~~~~~-~~~~~~~~~~s~~~~~gv  160 (221)
                      ++|||++++.||+.+..|+..+....    ...|+++|+||.|+..   +.+. .+...++ ...++.|++|||++|.|+
T Consensus        75 ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v  154 (175)
T d2bmja1          75 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNV  154 (175)
T ss_dssp             EEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTH
T ss_pred             EEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCH
Confidence            99999999999999999988876542    4678999999988743   2233 3444564 445789999999999999


Q ss_pred             HHHHHHHHHHHhC
Q 027607          161 EKPFLYLARKLAG  173 (221)
Q Consensus       161 ~~~~~~l~~~l~~  173 (221)
                      +++|..+++.+..
T Consensus       155 ~~~F~~l~~~i~~  167 (175)
T d2bmja1         155 DRVFQEVAQKVVT  167 (175)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999997754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.97  E-value=5.9e-30  Score=183.02  Aligned_cols=158  Identities=17%  Similarity=0.317  Sum_probs=125.5

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      ..+.+++||+++|++|||||||+++|..+.+. ...++.+.+....    ...++.+.+||++|++.+...+..++..+|
T Consensus        11 ~~~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~-~~~~~~~~~~~~i----~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~   85 (176)
T d1fzqa_          11 SAPDQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNIKSV----QSQGFKLNVWDIGGQRKIRPYWRSYFENTD   85 (176)
T ss_dssp             SCCSSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEEEEE----EETTEEEEEEECSSCGGGHHHHHHHHTTCS
T ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHhcCCCC-cceeeeeeeEEEe----ccCCeeEeEeeccccccchhHHHHHhhccc
Confidence            45668899999999999999999998877764 3344555544433    234678999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCCh
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      ++++|||+++..++.....|+..+...  ..+.|+++|+||+|+.+........     .......+.++++||++|.|+
T Consensus        86 ~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv  165 (176)
T d1fzqa_          86 ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGV  165 (176)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred             eeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCH
Confidence            999999999999999888887776543  2578999999999997644332222     223344678999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          161 EKPFLYLARK  170 (221)
Q Consensus       161 ~~~~~~l~~~  170 (221)
                      +++|+||++.
T Consensus       166 ~e~~~~l~~~  175 (176)
T d1fzqa_         166 QDGMNWVCKN  175 (176)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHhc
Confidence            9999999875

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.96  E-value=3.3e-29  Score=180.05  Aligned_cols=160  Identities=19%  Similarity=0.283  Sum_probs=123.5

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      ...+++||+++|++|||||||++++..+.+. ...++.+.......    .+.+.+.+||++|++.+...+..++..+++
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~-~~~~t~~~~~~~~~----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~   87 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGEVV-TTKPTIGFNVETLS----YKNLKLNVWDLGGQTSIRPYWRCYYADTAA   87 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSEEE-EECSSTTCCEEEEE----ETTEEEEEEEEC----CCTTGGGTTTTEEE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCC-ccccccceEEEEEe----eCCEEEEEEecccccccchhHHhhhcccee
Confidence            4668899999999999999999997766653 44556665444332    356889999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++|+|+++..++.....|+......  ..+.|+++|+||+|+.+.....+..     ..+...++.+++|||++|.|++
T Consensus        88 ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~  167 (182)
T d1moza_          88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT  167 (182)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHH
T ss_pred             EEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHH
Confidence            99999999999998888887665443  2578999999999997643333322     2234456789999999999999


Q ss_pred             HHHHHHHHHHhC
Q 027607          162 KPFLYLARKLAG  173 (221)
Q Consensus       162 ~~~~~l~~~l~~  173 (221)
                      ++|++|.+.+.+
T Consensus       168 e~~~~l~~~i~~  179 (182)
T d1moza_         168 EGLDWLIDVIKE  179 (182)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987643

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.96  E-value=6e-29  Score=177.26  Aligned_cols=159  Identities=21%  Similarity=0.295  Sum_probs=125.5

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccccccccc
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQ   87 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d   87 (221)
                      .++.+++||+++|++|||||||+++++.+.+.. ..++.+.....    .....+.+.+||++|...++..+..+++.++
T Consensus         7 ~~~~k~~kIvlvG~~~vGKTSli~rl~~~~~~~-~~~t~~~~~~~----~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~   81 (173)
T d1e0sa_           7 IFGNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQ   81 (173)
T ss_dssp             HHTTCCEEEEEEEETTSSHHHHHHHTTCCCCEE-EEEETTEEEEE----EEETTEEEEEEEESCCGGGHHHHGGGTTTCC
T ss_pred             hhCCCeEEEEEECCCCCCHHHHHHHHhcCCCCC-ccceeeeeEEE----eeccceeeEEecCCCcchhhhHHHhhhcccc
Confidence            356788999999999999999999987766533 33444443332    3335678999999999999999999999999


Q ss_pred             EEEEEEECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCCh
Q 027607           88 CAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        88 ~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      ++++|+|+++..++..+..|+......  ....|+++|+||+|+.+.....+..     ..+...++.+++|||++|.|+
T Consensus        82 ~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv  161 (173)
T d1e0sa_          82 GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGL  161 (173)
T ss_dssp             EEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTH
T ss_pred             eEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCH
Confidence            999999999999999888887766543  3589999999999997644333222     233445678999999999999


Q ss_pred             HHHHHHHHHHH
Q 027607          161 EKPFLYLARKL  171 (221)
Q Consensus       161 ~~~~~~l~~~l  171 (221)
                      +++|++|.+.+
T Consensus       162 ~e~~~~l~~~~  172 (173)
T d1e0sa_         162 YEGLTWLTSNY  172 (173)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhc
Confidence            99999998754

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.94  E-value=5.7e-27  Score=164.50  Aligned_cols=153  Identities=21%  Similarity=0.235  Sum_probs=122.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEE
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~   93 (221)
                      +||+|+|++|||||||+++|+.+.+...+.....     .........+.+.+||++|...+...+..++..++++++++
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~   75 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGF-----NVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV   75 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSC-----CEEEEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceee-----EEEEEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEE
Confidence            5899999999999999999988877554333322     23344556788999999999999888999999999999999


Q ss_pred             ECCChhhhccHHHHHHHHHhh--cCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHHHHH
Q 027607           94 DVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPFLY  166 (221)
Q Consensus        94 d~~~~~s~~~~~~~~~~~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~~~~  166 (221)
                      |.++..++..+..|+..+...  ....|+++++||.|+.+.....+..     ..+...++.++++||++|.|++++|++
T Consensus        76 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~  155 (160)
T d1r8sa_          76 DSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDW  155 (160)
T ss_dssp             ETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHH
T ss_pred             EecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHH
Confidence            999999999888887776543  3578999999999987654333322     334455778999999999999999999


Q ss_pred             HHHHH
Q 027607          167 LARKL  171 (221)
Q Consensus       167 l~~~l  171 (221)
                      |++++
T Consensus       156 l~~~l  160 (160)
T d1r8sa_         156 LSNQL  160 (160)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            98864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=159.04  Aligned_cols=158  Identities=22%  Similarity=0.304  Sum_probs=118.0

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccE
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQC   88 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~   88 (221)
                      .+.+++||+|+|.+|||||||++++..+.+.. ..++.+.......    .....+.+||+++.+.....+..++..+++
T Consensus        11 ~~~k~~kI~vvG~~~~GKSsLi~rl~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~   85 (177)
T d1zj6a1          11 FNHQEHKVIIVGLDNAGKTTILYQFSMNEVVH-TSPTIGSNVEEIV----INNTRFLMWDIGGQESLRSSWNTYYTNTEF   85 (177)
T ss_dssp             HTTSCEEEEEEESTTSSHHHHHHHHHTTSCEE-EECCSCSSCEEEE----ETTEEEEEEECCC----CGGGHHHHTTCCE
T ss_pred             hCCCeEEEEEECCCCCCHHHHHHHHhcCCCCc-cccccceeEEEEe----ecceEEEEeccccccccccchhhhhcccee
Confidence            45688999999999999999999988877643 3334443332222    245789999999999999999999999999


Q ss_pred             EEEEEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHH-----HHhhcCCeEEEecccCCCChH
Q 027607           89 AIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVT-----FHRKKNLQYYEISAKSNYNFE  161 (221)
Q Consensus        89 ~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~-----~~~~~~~~~~~~s~~~~~gv~  161 (221)
                      +++++|.++..++.....+......  .....|+++|+||+|+.......+...     .....++.++++||++|.|++
T Consensus        86 ~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~  165 (177)
T d1zj6a1          86 VIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLC  165 (177)
T ss_dssp             EEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHH
T ss_pred             eeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHH
Confidence            9999999999988776655544432  236899999999999876544333222     223456789999999999999


Q ss_pred             HHHHHHHHHH
Q 027607          162 KPFLYLARKL  171 (221)
Q Consensus       162 ~~~~~l~~~l  171 (221)
                      +++++|.+++
T Consensus       166 e~~~~L~~~l  175 (177)
T d1zj6a1         166 QGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999875

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=5.3e-26  Score=162.58  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=113.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------ccccc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------DGYYI   84 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------~~~~~   84 (221)
                      .-+|+|+|.+|||||||+|+|++... .......+++...........+..+.+|||||........        ..++.
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~~~-~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~   83 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGVKV-APISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALA   83 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSCC-SCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCCc-eeecccCCcccccccceeeeeeeeeeecccccccccccccchhcccccccccc
Confidence            34799999999999999999776543 3334455555555554444456789999999975433322        23467


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-HHHhhc-CCeEEEecccCCCChHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-TFHRKK-NLQYYEISAKSNYNFEK  162 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~-~~~~~~~s~~~~~gv~~  162 (221)
                      ++|++++|+|++++..... ..|...+.....+.|+++|+||+|+....  .+.. .+.... ...++++||++|.|+++
T Consensus        84 ~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~iSA~~~~gi~~  160 (178)
T d1wf3a1          84 DVNAVVWVVDLRHPPTPED-ELVARALKPLVGKVPILLVGNKLDAAKYP--EEAMKAYHELLPEAEPRMLSALDERQVAE  160 (178)
T ss_dssp             SCSEEEEEEETTSCCCHHH-HHHHHHHGGGTTTSCEEEEEECGGGCSSH--HHHHHHHHHTSTTSEEEECCTTCHHHHHH
T ss_pred             cccceeeeechhhhhcccc-cchhhheeccccchhhhhhhcccccccCH--HHHHHHHHhhcccCceEEEecCCCCCHHH
Confidence            8999999999987644322 34455555555689999999999986532  2222 222333 35789999999999999


Q ss_pred             HHHHHHHHHhCCCCC
Q 027607          163 PFLYLARKLAGDPNL  177 (221)
Q Consensus       163 ~~~~l~~~l~~~~~~  177 (221)
                      ++++|++.+.++|.+
T Consensus       161 L~~~i~~~lpe~p~~  175 (178)
T d1wf3a1         161 LKADLLALMPEGPFF  175 (178)
T ss_dssp             HHHHHHTTCCBCCCS
T ss_pred             HHHHHHHhCCCCCCC
Confidence            999999877665543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.92  E-value=9.4e-24  Score=149.02  Aligned_cols=158  Identities=21%  Similarity=0.323  Sum_probs=122.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+++|.+|||||||+++|+.+.+... .++.+...    .....+.+.+.+|+.+|..........++...+++++
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTT-IPTIGFNV----ETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIY   78 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-CCCSSEEE----EEEEETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCcce-ecccceee----eeeccCceEEEEeeccccccccccchhhhhhhhhhhh
Confidence            569999999999999999999998877542 33444322    2233356789999999999988888999999999999


Q ss_pred             EEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHH-----HHHhhcCCeEEEecccCCCChHHHH
Q 027607           92 MFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQV-----TFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        92 v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~-----~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      ++|+.+..++.....+......  .....|+++++||.|+.+.....+..     .++....++++++||++|.|++++|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~  158 (169)
T d1upta_          79 VVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAM  158 (169)
T ss_dssp             EEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHH
T ss_pred             hhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence            9999988877776665444432  23578999999999997655433322     3445567889999999999999999


Q ss_pred             HHHHHHHhCC
Q 027607          165 LYLARKLAGD  174 (221)
Q Consensus       165 ~~l~~~l~~~  174 (221)
                      ++|++.+...
T Consensus       159 ~~l~~~l~~k  168 (169)
T d1upta_         159 EWLVETLKSR  168 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHhC
Confidence            9999987543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=7e-25  Score=154.10  Aligned_cols=152  Identities=17%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc--------ccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL--------RDGYYIH   85 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~--------~~~~~~~   85 (221)
                      +||+++|++|||||||+|+|+.... .......+.+.......+...+..+.+||++|.......        ...++..
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~   80 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA-AIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ   80 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC-SCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc-eEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence            7999999999999999999775543 334455566666666566666678999999996543321        1234678


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +|++++++|..+..++.....|...+.....+.|+++|+||+|+......     .....+.+++++||++|.|++++++
T Consensus        81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~-----~~~~~~~~~~~iSAk~~~gi~~L~~  155 (161)
T d2gj8a1          81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG-----MSEVNGHALIRLSARTGEGVDVLRN  155 (161)
T ss_dssp             CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----EEEETTEEEEECCTTTCTTHHHHHH
T ss_pred             ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH-----HHHhCCCcEEEEECCCCCCHHHHHH
Confidence            99999999999888877777666666555568999999999998653322     1223467899999999999999999


Q ss_pred             HHHHHH
Q 027607          166 YLARKL  171 (221)
Q Consensus       166 ~l~~~l  171 (221)
                      +|++.|
T Consensus       156 ~l~~~l  161 (161)
T d2gj8a1         156 HLKQSM  161 (161)
T ss_dssp             HHHHHC
T ss_pred             HHHhhC
Confidence            998863

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=9.1e-24  Score=148.43  Aligned_cols=150  Identities=19%  Similarity=0.335  Sum_probs=116.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFD   94 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d   94 (221)
                      ||+++|++|||||||+++|..+.+. .+.++.+.+..    ........+.+||++|.......+..++..++++++++|
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~-~~~~t~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   76 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTSE----ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVD   76 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCC-CCCCCCSCEEE----EECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCC-eeeceeeEeEE----EeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeecc
Confidence            7999999999999999998887764 44555554443    333455678999999999899899999999999999999


Q ss_pred             CCChhhhccHHHHHHHHHhhc--CCCCEEEEEeCCCcCCccccHHHHHH------------HhhcCCeEEEecccCCCCh
Q 027607           95 VTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQVTF------------HRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        95 ~~~~~s~~~~~~~~~~~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~------------~~~~~~~~~~~s~~~~~gv  160 (221)
                      .++..++.....|........  .+.|+++++||.|+.......+....            .....+.+++|||++|.|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv  156 (166)
T d2qtvb1          77 AADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGY  156 (166)
T ss_dssp             TTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCCCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSH
T ss_pred             ccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccCCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCH
Confidence            999988887777666654432  57899999999998764333322211            1233467999999999999


Q ss_pred             HHHHHHHHH
Q 027607          161 EKPFLYLAR  169 (221)
Q Consensus       161 ~~~~~~l~~  169 (221)
                      +++|+||++
T Consensus       157 ~e~~~~l~~  165 (166)
T d2qtvb1         157 LEAFQWLSQ  165 (166)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhC
Confidence            999999864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.5e-24  Score=151.84  Aligned_cols=160  Identities=14%  Similarity=0.076  Sum_probs=108.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccc----cccc---cccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF----GGLR---DGYYIHGQ   87 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~----~~~~---~~~~~~~d   87 (221)
                      .|+++|.+|||||||+|+|++.... .......++..............+.+|||||....    ....   ...+..++
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~   81 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRAHPK-IAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTR   81 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSSCCE-ECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCc-eeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhh
Confidence            4999999999999999997654432 22222222233333444445567899999995321    1111   22356789


Q ss_pred             EEEEEEECCChh--hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           88 CAIIMFDVTARL--TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        88 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      ++++++|+....  .......|+........++|+++|+||+|+..+....+........+.+++.+||++|.|++++++
T Consensus        82 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~  161 (180)
T d1udxa2          82 VLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKE  161 (180)
T ss_dssp             EEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHH
T ss_pred             hhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHH
Confidence            999999987542  222233333333222346899999999999876655555566667789999999999999999999


Q ss_pred             HHHHHHhCCC
Q 027607          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      .|.+.+...+
T Consensus       162 ~i~~~l~~~~  171 (180)
T d1udxa2         162 ALHALVRSTP  171 (180)
T ss_dssp             HHHHHHHTSC
T ss_pred             HHHHHHhhcC
Confidence            9999876554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=1.3e-24  Score=157.21  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=111.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+++|..|||||||+++|..+.+.     +.|..    +..+......+.+||++|++.++..+..+++.++++++
T Consensus         1 ~e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~   71 (195)
T d1svsa1           1 REVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIV----ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIF   71 (195)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEE----EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhCCCC-----CccEE----EEEEEeeeeeeeeeccccccccccchhhcccCCceeee
Confidence            5799999999999999999998866553     33322    23344466889999999999999999999999999999


Q ss_pred             EEECCChhhhccHH-----------HHHHHHHhh-cCCCCEEEEEeCCCcCCcc-----------------ccHHHH---
Q 027607           92 MFDVTARLTYKNVP-----------TWHRDLCRV-CENIPIVLCGNKVDVKNRQ-----------------VKAKQV---  139 (221)
Q Consensus        92 v~d~~~~~s~~~~~-----------~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-----------------~~~~~~---  139 (221)
                      |+|+++..++....           .|...+... ....|+++++||.|+....                 ...+..   
T Consensus        72 v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (195)
T d1svsa1          72 CVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYI  151 (195)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHH
T ss_pred             EEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHH
Confidence            99999988774432           222223222 3578999999999952211                 001111   


Q ss_pred             --HHH------hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          140 --TFH------RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       140 --~~~------~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                        .+.      ....+.++++||++|.|++++|+.+.+.+.+
T Consensus       152 ~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         152 QCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             HHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence              111      1234567889999999999999999887653

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.90  E-value=4.1e-23  Score=147.88  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=111.3

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEE
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCA   89 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~   89 (221)
                      ..+..||+++|++|||||||+++|..+.+.. ..++.+.+....  ..  ....+..||+.+.......+..++...+++
T Consensus        10 ~~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~-~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (186)
T d1f6ba_          10 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQ-HVPTLHPTSEEL--TI--AGMTFTTFDLGGHIQARRVWKNYLPAINGI   84 (186)
T ss_dssp             TTCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE--EE--TTEEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCcc-eecccccceeEE--Ee--cccccccccccchhhhhhHHhhhhccccee
Confidence            3578999999999999999999987776543 334444443333  22  345788999999999888889999999999


Q ss_pred             EEEEECCChhhhccHHHHHHHHHh--hcCCCCEEEEEeCCCcCCccccHHHHHHH-----------------hhcCCeEE
Q 027607           90 IIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQVTFH-----------------RKKNLQYY  150 (221)
Q Consensus        90 i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-----------------~~~~~~~~  150 (221)
                      ++++|+++...+.....+......  ...+.|+++++||.|+.......+.....                 ...++.++
T Consensus        85 ~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (186)
T d1f6ba_          85 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF  164 (186)
T ss_dssp             EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEE
T ss_pred             eeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccCCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEE
Confidence            999999999888776655444433  23689999999999987643333222221                 12245789


Q ss_pred             EecccCCCChHHHHHHHHHHH
Q 027607          151 EISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      +|||++|.|++++|+||++.+
T Consensus       165 ~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         165 MCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             ECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEeCCCCCCHHHHHHHHHHhh
Confidence            999999999999999998753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=4.7e-24  Score=154.81  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=118.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +++||+++|..|||||||+++|..+.+.  +.+|.|.....    +....+.+.+||++|++.++..+..++..++++++
T Consensus         1 ke~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~~----~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~   74 (200)
T d2bcjq2           1 RELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEYP----FDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMF   74 (200)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEEE----EECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEEE----EeccceeeeeccccccccccccccccccccceeeE
Confidence            5799999999999999999999888763  56888866543    33466789999999999999999999999999999


Q ss_pred             EEECCChhh-----------hccHHHHHHHHHhh-cCCCCEEEEEeCCCcCCccc------------------cHHHHHH
Q 027607           92 MFDVTARLT-----------YKNVPTWHRDLCRV-CENIPIVLCGNKVDVKNRQV------------------KAKQVTF  141 (221)
Q Consensus        92 v~d~~~~~s-----------~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~------------------~~~~~~~  141 (221)
                      ++|.++..+           ++....|...+... ..+.|+++++||.|+.....                  ......+
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (200)
T d2bcjq2          75 LVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREF  154 (200)
T ss_dssp             EEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHH
T ss_pred             eeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHH
Confidence            999987654           33455566665443 36899999999999632110                  0011111


Q ss_pred             H----------hhcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          142 H----------RKKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       142 ~----------~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      .          ....+.++++||++|.|++++|+.|.+.+.+
T Consensus       155 i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         155 ILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQ  196 (200)
T ss_dssp             HHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHHH
Confidence            1          1234567899999999999999999887753

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.90  E-value=1.2e-23  Score=149.14  Aligned_cols=157  Identities=17%  Similarity=0.144  Sum_probs=103.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------cccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------LRDGYYIH   85 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------~~~~~~~~   85 (221)
                      +|+|+|++|||||||+|+|++. .........+.+.......+......+.+||++|......         ....++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~   80 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE   80 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence            6999999999999999997643 3334455666666666666666777899999999432211         11223568


Q ss_pred             ccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHH
Q 027607           86 GQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFL  165 (221)
Q Consensus        86 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~  165 (221)
                      +|+++++.+.+....... ..+...+...  +.|+++|+||+|+.+.................++++||++|.|++++++
T Consensus        81 ad~i~~~~~~~~~~~~~~-~~~~~~l~~~--~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~  157 (171)
T d1mkya1          81 ADLVLFVVDGKRGITKED-ESLADFLRKS--TVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLE  157 (171)
T ss_dssp             CSEEEEEEETTTCCCHHH-HHHHHHHHHH--TCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHH
T ss_pred             CcEEEEeecccccccccc-cccccccccc--cccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHH
Confidence            899999999877654332 3344444444  7899999999998654333223334444455679999999999999999


Q ss_pred             HHHHHHhCCC
Q 027607          166 YLARKLAGDP  175 (221)
Q Consensus       166 ~l~~~l~~~~  175 (221)
                      +|.+.+.+..
T Consensus       158 ~i~~~l~e~~  167 (171)
T d1mkya1         158 TIIKKLEEKG  167 (171)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHhCCCCC
Confidence            9999775543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=8.3e-24  Score=151.09  Aligned_cols=161  Identities=19%  Similarity=0.095  Sum_probs=105.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCccc-----CCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYE-----PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI   84 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~   84 (221)
                      +.+.++|+++|++|+|||||+|+|+.........     ...|.+.......+...+..+.++|++|+..+.......+.
T Consensus         2 ~~k~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~   81 (179)
T d1wb1a4           2 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAAD   81 (179)
T ss_dssp             CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhh
Confidence            4566999999999999999999987533211111     11122222222223334567889999999888777777888


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH---HHHHH-----hhcCCeEEEecccC
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK---QVTFH-----RKKNLQYYEISAKS  156 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~---~~~~~-----~~~~~~~~~~s~~~  156 (221)
                      .+|++++++|+++....+... ....+..  .++|+++|+||+|+.+......   .....     .....+++++||++
T Consensus        82 ~~d~~ilv~d~~~g~~~~~~~-~~~~~~~--~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~  158 (179)
T d1wb1a4          82 IIDLALIVVDAKEGPKTQTGE-HMLILDH--FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKT  158 (179)
T ss_dssp             SCCEEEEEEETTTCSCHHHHH-HHHHHHH--TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTT
T ss_pred             hccccccccccccccchhhhh-hhhhhhh--cCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccC
Confidence            999999999999864333222 2222222  3899999999999876432211   11111     12245789999999


Q ss_pred             CCChHHHHHHHHHHHhC
Q 027607          157 NYNFEKPFLYLARKLAG  173 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~  173 (221)
                      |.|++++++.|.+.+.+
T Consensus       159 g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         159 GFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CTTHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHhcCCc
Confidence            99999999999886543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=7.5e-23  Score=146.86  Aligned_cols=162  Identities=14%  Similarity=0.118  Sum_probs=101.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE-EEecCcEEEEEEEecCCccccc----ccccc---ccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD-FFTNCGKIRFYCWDTAGQEKFG----GLRDG---YYIHG   86 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~D~~g~~~~~----~~~~~---~~~~~   86 (221)
                      .|+|+|++|||||||+|+|.+... .. ....+.|..... .........+.+|||||.....    .+...   .+..+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~~~-~~-~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~   80 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSAKP-KI-ADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERT   80 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEECC-EE-SSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCCC-ce-ecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHh
Confidence            589999999999999999665442 22 222222322222 2222234578899999953211    11122   24567


Q ss_pred             cEEEEEEECCChhhhccHHHHHHH--HHhh----cCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCCh
Q 027607           87 QCAIIMFDVTARLTYKNVPTWHRD--LCRV----CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNF  160 (221)
Q Consensus        87 d~~i~v~d~~~~~s~~~~~~~~~~--~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv  160 (221)
                      +.++++++............+...  ....    ..++|+++|+||+|+.+.....+........+.+++.+||++|.|+
T Consensus        81 ~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi  160 (185)
T d1lnza2          81 RVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGL  160 (185)
T ss_dssp             CEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTT
T ss_pred             hhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCH
Confidence            888888887655443332222111  1111    1368999999999997654333333333345678999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCc
Q 027607          161 EKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       161 ~~~~~~l~~~l~~~~~~~  178 (221)
                      ++++..|.+.+.+.|+..
T Consensus       161 ~~L~~~i~~~L~~~p~~~  178 (185)
T d1lnza2         161 RELLFEVANQLENTPEFP  178 (185)
T ss_dssp             HHHHHHHHHHHTSCCCCC
T ss_pred             HHHHHHHHHhhhhCCCCC
Confidence            999999999887666543

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=7.8e-23  Score=148.41  Aligned_cols=155  Identities=17%  Similarity=0.192  Sum_probs=105.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|.+|||||||+++|.   +...+.+|.|......    ..+...+.+||++|++.++..+..+++.++++++
T Consensus         1 r~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~~~----~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~   73 (200)
T d1zcba2           1 RLVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEYDF----EIKNVPFKMVDVGGQRSERKRWFECFDSVTSILF   73 (200)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEEEE----EETTEEEEEEEECC-------CTTSCTTCCEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEEEE----eeeeeeeeeecccceeeecccccccccccceeEE
Confidence            46899999999999999999973   5556778888655443    3367889999999999999999999999999999


Q ss_pred             EEECCChhhhc-------cHHHHH---HHHHh--hcCCCCEEEEEeCCCcCCcc------------------ccHHHHHH
Q 027607           92 MFDVTARLTYK-------NVPTWH---RDLCR--VCENIPIVLCGNKVDVKNRQ------------------VKAKQVTF  141 (221)
Q Consensus        92 v~d~~~~~s~~-------~~~~~~---~~~~~--~~~~~p~ivv~nK~D~~~~~------------------~~~~~~~~  141 (221)
                      +++.++..++.       ....+.   ..+..  ...+.|+++++||.|+..+.                  ....+.++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  153 (200)
T d1zcba2          74 LVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKF  153 (200)
T ss_dssp             EEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHH
T ss_pred             EEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHH
Confidence            99999865542       122222   22222  13589999999999963211                  00111111


Q ss_pred             Hh-----------hcCCeEEEecccCCCChHHHHHHHHHHHhC
Q 027607          142 HR-----------KKNLQYYEISAKSNYNFEKPFLYLARKLAG  173 (221)
Q Consensus       142 ~~-----------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~  173 (221)
                      ..           ...+.++.+||+++.+++.+|+.+.+.+.+
T Consensus       154 ~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         154 LVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH  196 (200)
T ss_dssp             HHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHHHH
Confidence            11           123556789999999999999998877654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.88  E-value=3.9e-23  Score=144.86  Aligned_cols=150  Identities=20%  Similarity=0.174  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc--c-------cccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG--L-------RDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~--~-------~~~~~~   84 (221)
                      +||+++|.+|||||||+|+|++.. ........+.+.......+...+..+.+|||||......  .       ....+.
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~   79 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNED-RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE   79 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT-BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHH
Confidence            699999999999999999976543 334455555565555555555667899999999432111  1       111256


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~  164 (221)
                      .+|++++|+|++++...+...     +.......++++++||.|..+.....+.. .......+++++||++|.|+++++
T Consensus        80 ~ad~ii~v~d~~~~~~~~~~~-----~~~~~~~~~~i~~~~k~d~~~~~~~~~~~-~~~~~~~~~~~vSA~~g~gi~~L~  153 (160)
T d1xzpa2          80 KADIVLFVLDASSPLDEEDRK-----ILERIKNKRYLVVINKVDVVEKINEEEIK-NKLGTDRHMVKISALKGEGLEKLE  153 (160)
T ss_dssp             HCSEEEEEEETTSCCCHHHHH-----HHHHHTTSSEEEEEEECSSCCCCCHHHHH-HHHTCSTTEEEEEGGGTCCHHHHH
T ss_pred             hCCEEEEEEeCCCCcchhhhh-----hhhhcccccceeeeeeccccchhhhHHHH-HHhCCCCcEEEEECCCCCCHHHHH
Confidence            799999999999876544322     22223478999999999987654443333 233345789999999999999999


Q ss_pred             HHHHHH
Q 027607          165 LYLARK  170 (221)
Q Consensus       165 ~~l~~~  170 (221)
                      ++|.+.
T Consensus       154 ~~I~ke  159 (160)
T d1xzpa2         154 ESIYRE  159 (160)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            998764

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.85  E-value=4.8e-21  Score=137.36  Aligned_cols=161  Identities=19%  Similarity=0.154  Sum_probs=98.8

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccc---------
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL---------   78 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~---------   78 (221)
                      +...+.+||+|+|.+|||||||+|+|++... .......+++.......+...+..+.++|++|.......         
T Consensus         3 p~~~~~~kV~iiG~~~~GKSTLin~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~   81 (186)
T d1mkya2           3 PEITDAIKVAIVGRPNVGKSTLFNAILNKER-ALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS   81 (186)
T ss_dssp             CCCCSCEEEEEECSTTSSHHHHHHHHHTSTT-EEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHCCCc-ceeecccccccccceeeeccCCceeeeeccCCccccccccccccccch
Confidence            3344679999999999999999999775443 122223333333333333334457889999996432221         


Q ss_pred             ---cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc-c-HHHHHHH-----hhcCCe
Q 027607           79 ---RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV-K-AKQVTFH-----RKKNLQ  148 (221)
Q Consensus        79 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~-~-~~~~~~~-----~~~~~~  148 (221)
                         ....+..+|++++|+|++.+...+. ..+...+..  .+.|+++|+||+|+..... . .+..+..     .....+
T Consensus        82 ~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~--~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          82 NYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER--RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             CHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH--TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             hHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH--cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence               1223567899999999986543222 233333333  3789999999999754322 1 1111111     122457


Q ss_pred             EEEecccCCCChHHHHHHHHHHHh
Q 027607          149 YYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       149 ~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                      ++++||++|.|+++++++|.+++.
T Consensus       159 i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         159 LIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.85  E-value=5.7e-21  Score=136.68  Aligned_cols=150  Identities=17%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc---------------cc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG---------------LR   79 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~---------------~~   79 (221)
                      +|+++|.+|||||||+|+|++...  .....+|+|.....+...    .+.+|||||......               ..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~--~~~~~~g~T~~~~~~~~~----~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~   75 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKV--RRGKRPGVTRKIIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFI   75 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCC--SSSSSTTCTTSCEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc--eeeCCCCEeecccccccc----cceecccCCceeccccccccccccchhhhhhh
Confidence            699999999999999999876544  245566666665554333    367899999522111               11


Q ss_pred             ccccccccEEEEEEECCChhhhcc---------HH-HHHHHHHhhcCCCCEEEEEeCCCcCCcc-ccHHHHHHHhh----
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKN---------VP-TWHRDLCRVCENIPIVLCGNKVDVKNRQ-VKAKQVTFHRK----  144 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~---------~~-~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~----  144 (221)
                      ...++.+|++++|+|++.......         .. .+...+..  .+.|+++|+||+|+.... ...........    
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLS  153 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGG
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhccccc
Confidence            233567899999999975432211         11 12222222  379999999999975422 11111111111    


Q ss_pred             -cCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          145 -KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       145 -~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                       ....++++||++|.|+++++++|.+.+.
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence             1234889999999999999999988664

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.85  E-value=6e-21  Score=141.01  Aligned_cols=156  Identities=20%  Similarity=0.192  Sum_probs=100.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCccc----CCcceeeee------------eEEEecCcEEEEEEEecCCcccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYE----PTIGVEVHP------------LDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~----~~~~~~~~~------------~~~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      ..|+|+|.+++|||||+++|+.........    ...+.....            ....+..+...+.++||||+..+..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~~   85 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTT   85 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTT
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceecccc
Confidence            349999999999999999987643211100    000000000            0011233456789999999999988


Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccH---------------------
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKA---------------------  136 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~---------------------  136 (221)
                      .+...+..+|++++|+|+.+....+.. ..+..+..  .+.|+++|+||+|+.+.....                     
T Consensus        86 ~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~--~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  162 (227)
T d1g7sa4          86 LRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLD  162 (227)
T ss_dssp             SBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHH
T ss_pred             cchhcccccceEEEEEecccCcccchh-HHHHHhhc--CCCeEEEEEECccCCCchhhhhhHHHHHhhhcchHHHHHHHH
Confidence            888888999999999999876443332 22223332  388999999999975422100                     


Q ss_pred             -HHH----HHHh--------------hcCCeEEEecccCCCChHHHHHHHHHHHh
Q 027607          137 -KQV----TFHR--------------KKNLQYYEISAKSNYNFEKPFLYLARKLA  172 (221)
Q Consensus       137 -~~~----~~~~--------------~~~~~~~~~s~~~~~gv~~~~~~l~~~l~  172 (221)
                       ...    .+..              ....+++++|+.+|.|++++++.|.....
T Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~  217 (227)
T d1g7sa4         163 TKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (227)
T ss_dssp             HHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence             000    0000              01246899999999999999998877543

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=1.5e-20  Score=136.97  Aligned_cols=117  Identities=20%  Similarity=0.251  Sum_probs=85.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccc-cccccccccccEEEEEE
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG-GLRDGYYIHGQCAIIMF   93 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~-~~~~~~~~~~d~~i~v~   93 (221)
                      +|+|+|++|||||||+++|+.+.+... .++.+.+....... ....+.+.+||++|++.++ ..+..++..++++++|+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~-~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~   79 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVV   79 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCB-CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCcc-cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEE
Confidence            699999999999999999998877543 35555554443322 3456789999999998775 45677789999999999


Q ss_pred             ECCChhhh-ccHHHHHHHHH-hh---cCCCCEEEEEeCCCcCCcc
Q 027607           94 DVTARLTY-KNVPTWHRDLC-RV---CENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        94 d~~~~~s~-~~~~~~~~~~~-~~---~~~~p~ivv~nK~D~~~~~  133 (221)
                      |+++..++ .....++..+. ..   ....|+++|+||+|+.+..
T Consensus        80 D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          80 DSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             ETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             EcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            99987754 34444443332 21   2468999999999997533

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.84  E-value=3.8e-20  Score=133.61  Aligned_cols=154  Identities=10%  Similarity=0.056  Sum_probs=92.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc-------------c
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG-------------L   78 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~-------------~   78 (221)
                      .-.+|+|+|++|||||||+|+|++...........+.+...........   +.+.|++|......             .
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~   98 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDE---LHFVDVPGYGFAKVSKSEREAWGRMIET   98 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTT---EEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccccc---ceEEEEEeeccccccccccchhhhHHhh
Confidence            3348999999999999999998765544444455555544444444432   34556665321111             1


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHH-HH----hhcCCeEEEec
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT-FH----RKKNLQYYEIS  153 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~----~~~~~~~~~~s  153 (221)
                      ....+..++++++|+|++.+..- ....++..+...  ++|+++|+||+|+.......+... ..    .....+++.+|
T Consensus        99 ~~~~~~~~~~vi~viD~~~~~~~-~~~~~~~~l~~~--~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_          99 YITTREELKAVVQIVDLRHAPSN-DDVQMYEFLKYY--GIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHHHT--TCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECC
T ss_pred             hhccccchhhhhhhhhccccccc-cccccccccccc--cCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEe
Confidence            11224567999999999765321 122344444443  789999999999865433333221 11    22456789999


Q ss_pred             ccCCCChHHHHHHHHHHH
Q 027607          154 AKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       154 ~~~~~gv~~~~~~l~~~l  171 (221)
                      |.+|.|+++++++|.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998865

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=3e-20  Score=136.65  Aligned_cols=111  Identities=19%  Similarity=0.228  Sum_probs=84.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccccccccEEEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAII   91 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~   91 (221)
                      +.+||+++|..|||||||++++..+.+    .+|.|.......    .+++.+.+||++|++.++..|..++..++++++
T Consensus         5 ~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~~~~~~----~~~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~   76 (221)
T d1azta2           5 ATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIFETKFQ----VDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIF   76 (221)
T ss_dssp             HSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCEEEEEE----ETTEEEEEEECCCSTTTTTGGGGGCTTCSEEEE
T ss_pred             hcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeEEEEEE----ECcEEEEEEecCccceeccchhhhcccccceEE
Confidence            468999999999999999999876654    467776554433    256889999999999999999999999999999


Q ss_pred             EEECCChhhhc-------cHHH----HHHHHHhh-cCCCCEEEEEeCCCcC
Q 027607           92 MFDVTARLTYK-------NVPT----WHRDLCRV-CENIPIVLCGNKVDVK  130 (221)
Q Consensus        92 v~d~~~~~s~~-------~~~~----~~~~~~~~-~~~~p~ivv~nK~D~~  130 (221)
                      ++|.++...+.       .+..    |...+... ..+.|++|++||+|+.
T Consensus        77 v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~  127 (221)
T d1azta2          77 VVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLL  127 (221)
T ss_dssp             EEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHH
T ss_pred             EEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhh
Confidence            99998754321       1222    22222221 2589999999999974

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.82  E-value=3.9e-20  Score=133.56  Aligned_cols=159  Identities=16%  Similarity=0.068  Sum_probs=102.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCccCC-cccCCccee------eeeeEE-----------------EecCcEEEEEE
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-KYEPTIGVE------VHPLDF-----------------FTNCGKIRFYC   66 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~~~-~~~~~~~~~------~~~~~~-----------------~~~~~~~~i~~   66 (221)
                      .+.++|+++|+.++|||||+++|+...... ......|.+      ......                 ........+.+
T Consensus         3 ~~~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (195)
T d1kk1a3           3 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   82 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCcEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEee
Confidence            467899999999999999999976422111 000011111      110000                 01112456899


Q ss_pred             EecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHH
Q 027607           67 WDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFH  142 (221)
Q Consensus        67 ~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~  142 (221)
                      +|+||+..+.......+..+|++++|+|+.+..........+..... ....++++++||+|+.+.....+..    .+.
T Consensus        83 iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~-~~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~  161 (195)
T d1kk1a3          83 IDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQKNIIIAQNKIELVDKEKALENYRQIKEFI  161 (195)
T ss_dssp             EECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             eccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHH-hcCccceeeeecccchhhHHHHHHHHHHHHHh
Confidence            99999998887777778899999999999876432222222222222 2345688899999987654332222    222


Q ss_pred             hh---cCCeEEEecccCCCChHHHHHHHHHH
Q 027607          143 RK---KNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       143 ~~---~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ..   ..++++++||++|.|++++++.|...
T Consensus       162 ~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         162 EGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             TTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            22   24679999999999999999888764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.80  E-value=2e-19  Score=130.80  Aligned_cols=160  Identities=17%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCC-------cccCCcceeeeeeEEE----------------------ecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEK-------KYEPTIGVEVHPLDFF----------------------TNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~-------~~~~~~~~~~~~~~~~----------------------~~~~   60 (221)
                      ..|.++|+++|+.++|||||+++|+......       ......+.........                      ....
T Consensus         5 ~~p~ini~iiGhVd~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (205)
T d2qn6a3           5 VQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKF   84 (205)
T ss_dssp             CCCCEEEEEECSTTSSHHHHHHHHHSCCC--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEE
T ss_pred             CCCCeEEEEEEccCCcHHHHHHHHHhhhchhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeeccccc
Confidence            5677999999999999999999987421100       0000001010000000                      0112


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH-
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV-  139 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-  139 (221)
                      ...+.++|+||+..|.......+..+|++++|+|+.+.......+..+. +.......|+++++||+|+.+........ 
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~-~~~~~~i~~iIV~vNK~Dl~~~~~~~~~~~  163 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFV-ALGIIGVKNLIIVQNKVDVVSKEEALSQYR  163 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHH-HHHHTTCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHH-HHHHcCCceeeeccccCCCccchHHHHHHH
Confidence            3578999999999887766677788999999999987632212122222 22222346899999999997644332221 


Q ss_pred             ---HHHh---hcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          140 ---TFHR---KKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       140 ---~~~~---~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                         .+..   ...++++++||++|.|++++++.|...
T Consensus       164 ~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         164 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence               1111   124679999999999999999988775

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.80  E-value=5.6e-20  Score=132.20  Aligned_cols=156  Identities=12%  Similarity=-0.003  Sum_probs=106.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcC-----cc---------CCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTG-----EF---------EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGG   77 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~-----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~   77 (221)
                      |.++|+++|..++|||||+++|+..     ..         ........|.|.+.....+......+.++|+||+..|..
T Consensus         2 p~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~   81 (196)
T d1d2ea3           2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK   81 (196)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred             CCcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHH
Confidence            6799999999999999999998641     00         111223446677776777777778999999999988877


Q ss_pred             ccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH-----HHHHHhhc-----CC
Q 027607           78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK-----QVTFHRKK-----NL  147 (221)
Q Consensus        78 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~-----~~~~~~~~-----~~  147 (221)
                      .....+..+|++++|+|+.+...-+.. ..+... ......|+|+++||+|+.......+     ...+....     .+
T Consensus        82 ~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a-~~~~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~  159 (196)
T d1d2ea3          82 NMITGTAPLDGCILVVAANDGPMPQTR-EHLLLA-RQIGVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEET  159 (196)
T ss_dssp             HHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHH-HHTTCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred             HHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHH-HHhcCCcEEEEEecccccccHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            777778899999999999876432221 222222 2223568999999999864322211     11222222     36


Q ss_pred             eEEEecccCC----------CChHHHHHHHHH
Q 027607          148 QYYEISAKSN----------YNFEKPFLYLAR  169 (221)
Q Consensus       148 ~~~~~s~~~~----------~gv~~~~~~l~~  169 (221)
                      +++++|+++|          .++..+++.|..
T Consensus       160 pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~  191 (196)
T d1d2ea3         160 PIIVGSALCALEQRDPELGLKSVQKLLDAVDT  191 (196)
T ss_dssp             CEEECCHHHHHTTCCTTTTHHHHHHHHHHHHH
T ss_pred             EEEEEEccccccccCcccccCCHHHHHHHHHh
Confidence            7999999988          467777766654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=6.4e-18  Score=120.00  Aligned_cols=159  Identities=17%  Similarity=0.139  Sum_probs=98.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccc---------cccccccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK---------FGGLRDGYYI   84 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~---------~~~~~~~~~~   84 (221)
                      =.|+|+|.+|||||||+|+|++... .......+++..............+..+|++|...         ..........
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQKI-SITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIG   84 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCSE-EECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCc-eeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchh
Confidence            4689999999999999999876543 22222333333333333333445667788887422         1222233345


Q ss_pred             cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc--cHHHHHHHhhc-CCeEEEecccCCCChH
Q 027607           85 HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKK-NLQYYEISAKSNYNFE  161 (221)
Q Consensus        85 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~-~~~~~~~s~~~~~gv~  161 (221)
                      .+++++++.|......  ....+...+..  ...|.++|+||+|......  ........... ..+++++||++|.|++
T Consensus        85 ~~~~~l~~~d~~~~~~--~~~~~~~~l~~--~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~  160 (179)
T d1egaa1          85 DVELVIFVVEGTRWTP--DDEMVLNKLRE--GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD  160 (179)
T ss_dssp             CEEEEEEEEETTCCCH--HHHHHHHHHHS--SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred             hcceeEEEEecCccch--hHHHHHHHhhh--ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHH
Confidence            6788888888765432  11222222222  4778999999999755322  22222333333 3679999999999999


Q ss_pred             HHHHHHHHHHhCCCCC
Q 027607          162 KPFLYLARKLAGDPNL  177 (221)
Q Consensus       162 ~~~~~l~~~l~~~~~~  177 (221)
                      ++++.|...+.+.|.+
T Consensus       161 ~L~~~i~~~lpe~~~~  176 (179)
T d1egaa1         161 TIAAIVRKHLPEATHH  176 (179)
T ss_dssp             HHHHHHHTTCCBCCCS
T ss_pred             HHHHHHHHhCCCCCCC
Confidence            9999998877666543

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.73  E-value=3.8e-18  Score=124.13  Aligned_cols=116  Identities=17%  Similarity=0.133  Sum_probs=82.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccccc----ccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGY----YIHGQ   87 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~~----~~~~d   87 (221)
                      ++.+|+++|++|||||||+|+|+++.+.+      +++.......+...+..+.+||+||+......+..+    ....+
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~   75 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVK   75 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEeCCeEEEEEecccccchhhHHHHHHHHHhhhcc
Confidence            45799999999999999999998776532      223333444556666788999999988766655444    34558


Q ss_pred             EEEEEEECCC-hhhhccHHHHHHHHH----hh-cCCCCEEEEEeCCCcCCcc
Q 027607           88 CAIIMFDVTA-RLTYKNVPTWHRDLC----RV-CENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        88 ~~i~v~d~~~-~~s~~~~~~~~~~~~----~~-~~~~p~ivv~nK~D~~~~~  133 (221)
                      .+++++|+.+ ..++.....|+..+.    .. ..+.|+++|+||+|+....
T Consensus        76 ~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          76 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             EEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             ccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            8888888774 455666666554332    22 2589999999999986643

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=5.8e-17  Score=115.56  Aligned_cols=161  Identities=13%  Similarity=0.009  Sum_probs=82.2

Q ss_pred             cccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccc--------
Q 027607            8 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLR--------   79 (221)
Q Consensus         8 ~~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~--------   79 (221)
                      .+....++|+++|.+|||||||+|+|+.........................+...+..++..+........        
T Consensus        11 ~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (188)
T d1puia_          11 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG   90 (188)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhhhhhhhhhhhh
Confidence            445678999999999999999999976654432222222222222222223332222222222211111100        


Q ss_pred             --ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HHHhh--cCCeEEE
Q 027607           80 --DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TFHRK--KNLQYYE  151 (221)
Q Consensus        80 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~--~~~~~~~  151 (221)
                        .........++.+.+......... ..+......  ...++++++||+|+.+........    +....  ...+++.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~  167 (188)
T d1puia_          91 EYLEKRQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD--SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET  167 (188)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH--TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred             hhhhhhhheeEEEEeecccccchhHH-HHHHHHhhh--ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEE
Confidence              011223445555666554432221 222222222  378999999999986543322211    11111  2357899


Q ss_pred             ecccCCCChHHHHHHHHHHH
Q 027607          152 ISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l  171 (221)
                      +||++|.|++++++.|...+
T Consensus       168 vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         168 FSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             CBTTTTBSHHHHHHHHHHHH
T ss_pred             EeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999987643

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.71  E-value=8.7e-17  Score=117.48  Aligned_cols=151  Identities=19%  Similarity=0.223  Sum_probs=94.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCC-----------------------------cccCCcceeeeeeEEEec
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK-----------------------------KYEPTIGVEVHPLDFFTN   58 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~   58 (221)
                      ..+.+||+++|..++|||||+.+|+.  +....                             ......+.+.......+.
T Consensus         6 ~~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~   85 (222)
T d1zunb3           6 RKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFS   85 (222)
T ss_dssp             SCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEE
T ss_pred             cCCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEe
Confidence            34678999999999999999999863  11100                             001111222222233334


Q ss_pred             CcEEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc---
Q 027607           59 CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK---  135 (221)
Q Consensus        59 ~~~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~---  135 (221)
                      .....+.++|+||+..+......-...+|++++|+|+.+...-+...  .-.+.....-..+++++||+|+.+....   
T Consensus        86 ~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e--~~~~~~~~gv~~iiv~vNK~D~~~~~~~~~~  163 (222)
T d1zunb3          86 TAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRR--HSYIASLLGIKHIVVAINKMDLNGFDERVFE  163 (222)
T ss_dssp             CSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHH--HHHHHHHTTCCEEEEEEECTTTTTSCHHHHH
T ss_pred             ccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHH--HHHHHHHcCCCEEEEEEEccccccccceehh
Confidence            45578999999999998877777788999999999998764333221  2222222223457889999998652211   


Q ss_pred             ---HHHHHHHhhcC-----CeEEEecccCCCChHH
Q 027607          136 ---AKQVTFHRKKN-----LQYYEISAKSNYNFEK  162 (221)
Q Consensus       136 ---~~~~~~~~~~~-----~~~~~~s~~~~~gv~~  162 (221)
                         .+...+....+     ++++++||++|.|+.+
T Consensus       164 ~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         164 SIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             HHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             hhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence               12223333332     4689999999999843

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.71  E-value=1.4e-17  Score=120.46  Aligned_cols=117  Identities=17%  Similarity=0.128  Sum_probs=84.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCcc--------CC-------cccCCcceeeeeeEEEecCcEEEEEEEecCCccccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--------EK-------KYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--------~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~   76 (221)
                      |.++|+++|+.++|||||+++|+....        ..       ......|.+.......+...+..+.++||||+..+.
T Consensus         2 ~~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~   81 (204)
T d2c78a3           2 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI   81 (204)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred             CCeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhH
Confidence            569999999999999999999863100        00       000112566666666777777889999999999988


Q ss_pred             cccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcCC
Q 027607           77 GLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVKN  131 (221)
Q Consensus        77 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~~  131 (221)
                      ......+..+|++++|+|+.+....+....|. ....  .+.| +++++||+|+.+
T Consensus        82 ~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~--~gi~~iiv~iNK~D~~~  134 (204)
T d2c78a3          82 KNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ--VGVPYIVVFMNKVDMVD  134 (204)
T ss_dssp             HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH--TTCCCEEEEEECGGGCC
T ss_pred             HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH--cCCCeEEEEEEecccCC
Confidence            87777889999999999998876554433332 2222  2555 778899999865

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.69  E-value=5e-17  Score=119.37  Aligned_cols=150  Identities=21%  Similarity=0.219  Sum_probs=94.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCcc--C---------------------------CcccCCcceeeeeeEEEecCcEE
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEF--E---------------------------KKYEPTIGVEVHPLDFFTNCGKI   62 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~--~---------------------------~~~~~~~~~~~~~~~~~~~~~~~   62 (221)
                      |.++|+++|+.++|||||+.+|+....  .                           .......|.+.......+..+.+
T Consensus         2 p~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~   81 (224)
T d1jnya3           2 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   81 (224)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCc
Confidence            579999999999999999999863110  0                           01112233444444445566678


Q ss_pred             EEEEEecCCccccccccccccccccEEEEEEECCChhhh-----ccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH
Q 027607           63 RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTY-----KNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK  137 (221)
Q Consensus        63 ~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-----~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~  137 (221)
                      .+.++||||+..|...+...++-+|++++|+|+.+...-     .....-...+.......++++++||+|+........
T Consensus        82 ~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D~~~~~~~~~  161 (224)
T d1jnya3          82 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEK  161 (224)
T ss_dssp             EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHH
T ss_pred             eeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEcccCCCccccHH
Confidence            899999999999988888888999999999999986421     111111111222234567899999999864322221


Q ss_pred             --------HHHHHhh-----cCCeEEEecccCCCChH
Q 027607          138 --------QVTFHRK-----KNLQYYEISAKSNYNFE  161 (221)
Q Consensus       138 --------~~~~~~~-----~~~~~~~~s~~~~~gv~  161 (221)
                              ...+...     ..++++++|+..|.|+-
T Consensus       162 ~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~  198 (224)
T d1jnya3         162 RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNIT  198 (224)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTT
T ss_pred             HHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCcc
Confidence                    1122222     23568999999999884

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.68  E-value=8.4e-17  Score=120.56  Aligned_cols=137  Identities=17%  Similarity=0.142  Sum_probs=98.6

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHhcCccC----------------CcccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           12 PSF-KLVIVGDGGTGKTTFVKRHLTGEFE----------------KKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~-~i~v~G~~gsGKStL~~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      .++ +|+++|+.|+|||||+.+++.....                .......+.+.......+.+++..+.++||||+.+
T Consensus         4 ~~iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~d   83 (276)
T d2bv3a2           4 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVD   83 (276)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSS
T ss_pred             hhceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhh
Confidence            344 6999999999999999998742111                01111223444444556666778999999999999


Q ss_pred             cccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEE
Q 027607           75 FGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYE  151 (221)
Q Consensus        75 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  151 (221)
                      |.......++.+|++++|+|+.+.-..+..+.|.. ...+  +.|.++++||+|........-..+.....+...++
T Consensus        84 F~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~~--~lP~i~fINKmDr~~ad~~~~l~ei~~~l~~~~vp  157 (276)
T d2bv3a2          84 FTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEKY--KVPRIAFANKMDKTGADLWLVIRTMQERLGARPVV  157 (276)
T ss_dssp             CSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHTT--TCCEEEEEECTTSTTCCHHHHHHHHHHTTCCCEEE
T ss_pred             hHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHHc--CCCEEEEEecccccccccchhHHHHHHHhCCCeEE
Confidence            99988888999999999999998866555555533 2332  89999999999998876665555566666655444

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=6.5e-16  Score=114.56  Aligned_cols=154  Identities=18%  Similarity=0.193  Sum_probs=84.1

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCC---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      ..+.++|+++|+.++|||||+.+|+.  |....                           ......|.+.......+...
T Consensus        21 ~k~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~  100 (245)
T d1r5ba3          21 GKEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE  100 (245)
T ss_dssp             CCEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred             CCCceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccc
Confidence            34678999999999999999999853  11100                           00111122222222233445


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhh---h--c-cHHHHHHHHHhhcCCCCEEEEEeCCCcCCccc
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--K-NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQV  134 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~  134 (221)
                      ...+.++|+||+..+......-...+|++++|+|+.+...   +  . .....+ .+.....-.++++++||+|+.....
T Consensus       101 ~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l-~l~~~~~i~~iiv~iNKmD~~~~~~  179 (245)
T d1r5ba3         101 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHA-VLARTQGINHLVVVINKMDEPSVQW  179 (245)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHH-HHHHHTTCSSEEEEEECTTSTTCSS
T ss_pred             cceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHH-HHHHHcCCCeEEEEEEcCCCCccch
Confidence            5789999999999998888888899999999999987531   1  1 122222 2222222345889999999864322


Q ss_pred             cHH----H----HHHHhh-------cCCeEEEecccCCCChHHHH
Q 027607          135 KAK----Q----VTFHRK-------KNLQYYEISAKSNYNFEKPF  164 (221)
Q Consensus       135 ~~~----~----~~~~~~-------~~~~~~~~s~~~~~gv~~~~  164 (221)
                      .++    .    ......       ..++++++||++|.|+.+++
T Consensus       180 ~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         180 SEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            211    1    111111       13579999999999997644

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=2e-16  Score=116.84  Aligned_cols=152  Identities=18%  Similarity=0.207  Sum_probs=98.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc--CccCC---------------------------cccCCcceeeeeeEEEecCc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT--GEFEK---------------------------KYEPTIGVEVHPLDFFTNCG   60 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~--~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~   60 (221)
                      +.+.++|+++|+.++|||||+.+|+.  +....                           ......|.+.......+...
T Consensus         3 ~k~~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~   82 (239)
T d1f60a3           3 EKSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP   82 (239)
T ss_dssp             CCEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred             CCCccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccC
Confidence            34569999999999999999999863  11100                           00112344555445555666


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhh---h--ccHHHHHHHHHhhcCCC-CEEEEEeCCCcCCccc
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT---Y--KNVPTWHRDLCRVCENI-PIVLCGNKVDVKNRQV  134 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~--~~~~~~~~~~~~~~~~~-p~ivv~nK~D~~~~~~  134 (221)
                      .+++.++|+||+.+|...+..-+..+|++++|+|+....-   +  +........+.... ++ ++++++||+|+.+...
T Consensus        83 ~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~-gv~~iiv~iNKmD~~~~d~  161 (239)
T d1f60a3          83 KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL-GVRQLIVAVNKMDSVKWDE  161 (239)
T ss_dssp             SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT-TCCEEEEEEECGGGGTTCH
T ss_pred             CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHc-CCCeEEEEEECCCCCCCCH
Confidence            7899999999999998887888899999999999987531   1  11111111222222 45 4788999999865321


Q ss_pred             c------HHHHHHHhhc-----CCeEEEecccCCCChHH
Q 027607          135 K------AKQVTFHRKK-----NLQYYEISAKSNYNFEK  162 (221)
Q Consensus       135 ~------~~~~~~~~~~-----~~~~~~~s~~~~~gv~~  162 (221)
                      .      .+...+....     .+.++++|+..|.|+-+
T Consensus       162 ~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         162 SRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            1      1222233222     35689999999988754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.62  E-value=1.2e-15  Score=113.97  Aligned_cols=113  Identities=21%  Similarity=0.242  Sum_probs=82.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCccCCcc----c------------CCcceeeeeeEEEecCcEEEEEEEecCCccccccc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEFEKKY----E------------PTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGL   78 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~~~~~----~------------~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~   78 (221)
                      +|+|+|+.|+|||||+.+++........    .            ...+.+.......+.+++..+.++||||+.+|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~e   83 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVGE   83 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhhh
Confidence            6999999999999999998642111000    0            01233444444556667788999999999999888


Q ss_pred             cccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           79 RDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        79 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      ....++.+|++++|+|+.+....+....|... ...  ++|.++++||+|..
T Consensus        84 ~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~-~~~--~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          84 IRGALEAADAALVAVSAEAGVQVGTERAWTVA-ERL--GLPRMVVVTKLDKG  132 (267)
T ss_dssp             HHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHT--TCCEEEEEECGGGC
T ss_pred             hhhhhcccCceEEEeeccCCccchhHHHHHhh-hhc--cccccccccccccc
Confidence            88889999999999999987655555444432 232  89999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=6.1e-15  Score=116.81  Aligned_cols=161  Identities=16%  Similarity=0.198  Sum_probs=91.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCc---ccCCcceeeeeeEEEecCcEEEEEEEecCCcccccccccc-----
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK---YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDG-----   81 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~~-----   81 (221)
                      +...++|+|+|.+|||||||+|+|++......   .....++|.....+... +...+.+|||||..........     
T Consensus        53 ~~~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~-~~~~~~l~DtPG~~~~~~~~~~~~~~~  131 (400)
T d1tq4a_          53 DSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHP-NIPNVVFWDLPGIGSTNFPPDTYLEKM  131 (400)
T ss_dssp             HHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECS-SCTTEEEEECCCGGGSSCCHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeecc-CCCeEEEEeCCCcccccccHHHHHHHh
Confidence            34569999999999999999999876433211   11223344444444332 3335789999996543322222     


Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCC--------cccc-HHH--------HHHHhh
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVK-AKQ--------VTFHRK  144 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~--------~~~~-~~~--------~~~~~~  144 (221)
                      .+...|.++++.|..-...  + ..+...+...  ++|+++|.||+|...        .... ...        ......
T Consensus       132 ~~~~~d~~l~~~~~~~~~~--d-~~l~~~l~~~--~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l~~  206 (400)
T d1tq4a_         132 KFYEYDFFIIISATRFKKN--D-IDIAKAISMM--KKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  206 (400)
T ss_dssp             TGGGCSEEEEEESSCCCHH--H-HHHHHHHHHT--TCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcceEEEEecCCCCCHH--H-HHHHHHHHHc--CCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHHHH
Confidence            2456788888776543221  1 2233334333  899999999999521        0001 111        111112


Q ss_pred             cC---CeEEEecccC--CCChHHHHHHHHHHHhCCCC
Q 027607          145 KN---LQYYEISAKS--NYNFEKPFLYLARKLAGDPN  176 (221)
Q Consensus       145 ~~---~~~~~~s~~~--~~gv~~~~~~l~~~l~~~~~  176 (221)
                      .+   -+++.+|...  ..|+.++.+.+.+.+....+
T Consensus       207 ~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~~~~  243 (400)
T d1tq4a_         207 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYKR  243 (400)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGGH
T ss_pred             cCCCCCCEEEecCCcccccCHHHHHHHHHHHhHHHHH
Confidence            22   2467787654  44888988888887655433

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.53  E-value=2.7e-14  Score=106.62  Aligned_cols=121  Identities=13%  Similarity=0.086  Sum_probs=75.8

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCccccccccc---------
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD---------   80 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~~~~~---------   80 (221)
                      ...+++|+++|.+|||||||+|++++.... ......++|...........+..+.++||||.........         
T Consensus        29 ~~~~l~I~LvG~tg~GKSSliN~ilg~~~~-~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~  107 (257)
T d1h65a_          29 DVNSLTILVMGKGGVGKSSTVNSIIGERVV-SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSF  107 (257)
T ss_dssp             TCCEEEEEEEESTTSSHHHHHHHHHTSCCS-CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCcHHHHHHHHhCCCce-eecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHH
Confidence            356799999999999999999997765433 3344455565555554444567899999999643221111         


Q ss_pred             cccccccEEEEEEECCChhhhccHHHHHHHHHhhc---CCCCEEEEEeCCCcCC
Q 027607           81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN  131 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ivv~nK~D~~~  131 (221)
                      ......+++++|++++...--......+..+....   --.++++|+||+|...
T Consensus       108 ~~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~  161 (257)
T d1h65a_         108 LLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP  161 (257)
T ss_dssp             TTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred             HhcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCC
Confidence            11235688889988875421111122223332222   1358999999999754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=2e-14  Score=110.76  Aligned_cols=116  Identities=16%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             Cce-EEEEEcCCCCcHHHHHHHHhcCcc--CC------------cccCCcceeeeeeEEEe----------------cCc
Q 027607           12 PSF-KLVIVGDGGTGKTTFVKRHLTGEF--EK------------KYEPTIGVEVHPLDFFT----------------NCG   60 (221)
Q Consensus        12 ~~~-~i~v~G~~gsGKStL~~~l~~~~~--~~------------~~~~~~~~~~~~~~~~~----------------~~~   60 (221)
                      ..+ +|+|+|+.++|||||+.+|+....  ..            ......|.+.......+                .++
T Consensus        15 ~~IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~   94 (341)
T d1n0ua2          15 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN   94 (341)
T ss_dssp             GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred             ccCcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhcccccc
Confidence            446 499999999999999999873111  00            00011122222222222                335


Q ss_pred             EEEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcC
Q 027607           61 KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVK  130 (221)
Q Consensus        61 ~~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~  130 (221)
                      .+.+.++||||+..+.......++-+|++++|+|+.++...+....|......   +.|.++++||+|..
T Consensus        95 ~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~a~~~---~~p~i~viNKiDr~  161 (341)
T d1n0ua2          95 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGE---RIKPVVVINKVDRA  161 (341)
T ss_dssp             EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---TCEEEEEEECHHHH
T ss_pred             ceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHHHHHc---CCCeEEEEECcccc
Confidence            67899999999999998888889999999999999998766665555544333   89999999999964

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.37  E-value=2.4e-13  Score=100.45  Aligned_cols=108  Identities=15%  Similarity=0.025  Sum_probs=63.2

Q ss_pred             EEEEEEecCCccccccccccc-----cccccEEEEEEECCChhhhcc---HHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           62 IRFYCWDTAGQEKFGGLRDGY-----YIHGQCAIIMFDVTARLTYKN---VPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~-----~~~~d~~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                      ..+.++|+||+..........     ....+.+++++|+.....-+.   .......... .-..|.++|+||+|+....
T Consensus        95 ~~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~-~~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          95 NDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDL-RLGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHH-HHTSCEEEEECCGGGCCHH
T ss_pred             cceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHH-HhCCCceeeeeccccccHH
Confidence            458889999986543322111     224568889999764322111   1111111111 1278999999999986532


Q ss_pred             ccHHHH----------------------------HH--HhhcCCeEEEecccCCCChHHHHHHHHHH
Q 027607          134 VKAKQV----------------------------TF--HRKKNLQYYEISAKSNYNFEKPFLYLARK  170 (221)
Q Consensus       134 ~~~~~~----------------------------~~--~~~~~~~~~~~s~~~~~gv~~~~~~l~~~  170 (221)
                      ......                            ..  .....++++++||.+|.|+++++..|.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            111100                            00  01134678999999999999999888765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.31  E-value=6.9e-12  Score=96.11  Aligned_cols=83  Identities=11%  Similarity=-0.047  Sum_probs=51.5

Q ss_pred             ccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH----HH-------HhhcCCeEE
Q 027607           82 YYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV----TF-------HRKKNLQYY  150 (221)
Q Consensus        82 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~----~~-------~~~~~~~~~  150 (221)
                      +...+|.+++|.........+..+.-+-.+       +-++|+||+|...........    ..       ...+..+++
T Consensus       164 i~~~aD~~l~v~~P~~Gd~iq~~k~gi~e~-------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~  236 (327)
T d2p67a1         164 VARMVDCFISLQIAGGGDDLQGIKKGLMEV-------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL  236 (327)
T ss_dssp             HHTTCSEEEEEECC------CCCCHHHHHH-------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred             hhhccceEEEEecCCCchhhhhhchhhhcc-------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeE
Confidence            345689999999887776666555443332       337888999987643222111    11       112345799


Q ss_pred             EecccCCCChHHHHHHHHHHH
Q 027607          151 EISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       151 ~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      .+||.+|.|++++++.|.+..
T Consensus       237 ~~SA~~g~Gi~eL~~~I~~~~  257 (327)
T d2p67a1         237 TCSALEKRGIDEIWHAIIDFK  257 (327)
T ss_dssp             ECBGGGTBSHHHHHHHHHHHH
T ss_pred             EEEeeCCCCHHHHHHHHHHHH
Confidence            999999999999999987743

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.26  E-value=2.9e-11  Score=92.50  Aligned_cols=100  Identities=9%  Similarity=0.028  Sum_probs=58.8

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHH--
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV--  139 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--  139 (221)
                      +.+.++.|.|.-..   -.....-+|..++|.........+..+.-+-       ..+=++|+||+|+.+........  
T Consensus       144 ~d~iiiETVG~gq~---e~~~~~~~D~~v~v~~p~~GD~iQ~~k~gil-------E~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         144 FDVILVETVGVGQS---ETAVADLTDFFLVLMLPGAGDELQGIKKGIF-------ELADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CCEEEEEECSSSSC---HHHHHTTSSEEEEEECSCC------CCTTHH-------HHCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CCeEEEeehhhhhh---hhhhhcccceEEEEeeccchhhhhhhhhhHh-------hhhheeeEeccccccchHHHHHHHH
Confidence            34566666663221   1223445899999999887755443322111       22448899999986543322111  


Q ss_pred             HHH----------hhcCCeEEEecccCCCChHHHHHHHHHHH
Q 027607          140 TFH----------RKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (221)
Q Consensus       140 ~~~----------~~~~~~~~~~s~~~~~gv~~~~~~l~~~l  171 (221)
                      .+.          ..+..+++.+|+++|.|+++++.+|.+..
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~  255 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR  255 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence            111          12345799999999999999999997754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.22  E-value=7.8e-11  Score=90.40  Aligned_cols=82  Identities=17%  Similarity=0.068  Sum_probs=44.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEE------------------------ecCcEEEEEEEec
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFF------------------------TNCGKIRFYCWDT   69 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~i~~~D~   69 (221)
                      ++|+++|.||||||||+|++.+...  ...+.+.+|..+....                        .......+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~~~--~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLVDV--EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCCCC--chhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            4899999999999999999665432  2233333333222111                        1123467999999


Q ss_pred             CCcccc-------ccccccccccccEEEEEEECCC
Q 027607           70 AGQEKF-------GGLRDGYYIHGQCAIIMFDVTA   97 (221)
Q Consensus        70 ~g~~~~-------~~~~~~~~~~~d~~i~v~d~~~   97 (221)
                      ||.-..       .......++.+|+++.|+|+.+
T Consensus        79 pGli~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          79 AGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             C---------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhcccchHHHHHHhhccceEEEEEecccc
Confidence            995321       1122233678999999999863

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.2e-11  Score=86.38  Aligned_cols=51  Identities=20%  Similarity=0.300  Sum_probs=36.7

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .+.++|  -++....|++++..+|++.++|||+++     +|+....++...++++..
T Consensus       128 ~~~LSG--GqkQRvaiAraL~~~P~illlDEPts~-----LD~~~~~~i~~~l~~l~~  178 (232)
T d2awna2         128 PKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSN-----LDAALRVQMRIEISRLHK  178 (232)
T ss_dssp             --------------CHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHH
T ss_pred             hhhCCH--HHHHHHHHHHHHhcCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHH
Confidence            444444  444557799999999999999999999     999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.16  E-value=3e-11  Score=88.12  Aligned_cols=49  Identities=18%  Similarity=0.261  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||+.+     +|+.....+.+.++++.++
T Consensus       140 LSGGqkQRv~IAraL~~~P~iLllDEPt~~-----LD~~~~~~i~~~l~~l~~~  188 (240)
T d1g2912         140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSN-----LDAKLRVRMRAELKKLQRQ  188 (240)
T ss_dssp             SCHHHHHHHHHHHHHHTCCSEEEEECTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCCcc-----cCHHHHHHHHHHHHHHHhc
Confidence            345566668899999999999999999999     9999999999999988654

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.15  E-value=2.4e-11  Score=89.11  Aligned_cols=51  Identities=16%  Similarity=0.220  Sum_probs=45.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      +|-+.....|++++..+|++.++|||+.+     +|+....++.+.++++++++.+
T Consensus       141 SGG~~Qrv~iAraL~~~P~lLllDEPt~g-----LD~~~~~~i~~~i~~l~~~g~t  191 (240)
T d1ji0a_         141 SGGEQQMLAIGRALMSRPKLLMMDEPSLG-----LAPILVSEVFEVIQKINQEGTT  191 (240)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEECTTTT-----CCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHHhCCCEeeecCCCcC-----CCHHHHHHHHHHHHHHHhCCCE
Confidence            45566667799999999999999999999     9999999999999999887654

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.13  E-value=2.3e-11  Score=89.04  Aligned_cols=50  Identities=22%  Similarity=0.283  Sum_probs=43.9

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      .|-+.....|+++++.+|++.++|||+.+     +|+...+++.+.++++++++.
T Consensus       135 SgG~~qrv~iA~al~~~p~illLDEPt~g-----LD~~~~~~i~~~i~~~~~~g~  184 (238)
T d1vpla_         135 SKGMVRKLLIARALMVNPRLAILDEPTSG-----LDVLNAREVRKILKQASQEGL  184 (238)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEecCCCCC-----CCHHHHHHHHHHHHHHHhcCC
Confidence            34455557799999999999999999999     999999999999999887764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.12  E-value=1.5e-11  Score=89.64  Aligned_cols=52  Identities=15%  Similarity=0.253  Sum_probs=43.7

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .+.++|...+.  ..|++++..+|++.++|||+++     +|+....++.+.++++.++
T Consensus       134 ~~~LSGGq~QR--vaiAraL~~~P~iLllDEPts~-----LD~~~~~~i~~ll~~l~~~  185 (239)
T d1v43a3         134 PAQLSGGQRQR--VAVARAIVVEPDVLLMDEPLSN-----LDAKLRVAMRAEIKKLQQK  185 (239)
T ss_dssp             TTTCCSSCHHH--HHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHH--HHHHhhhccCCCceeecCCccc-----CCHHHHHHHHHHHHHHHHh
Confidence            44555554444  6799999999999999999999     9999999999999988654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=99.08  E-value=1.1e-10  Score=84.41  Aligned_cols=48  Identities=23%  Similarity=0.320  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      +|-+.....|++++..+|++.++|||+++     +|+....++.+.++.+.++
T Consensus       129 SGG~~QRvaiAraL~~~P~iLllDEPts~-----LD~~~~~~i~~~l~~l~~~  176 (229)
T d3d31a2         129 SGGEQQRVALARALVTNPKILLLDEPLSA-----LDPRTQENAREMLSVLHKK  176 (229)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESSSTT-----SCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHhcchhhhhhhhccCCceeecCCCcC-----CCHHHHHHHHHHHHHHHhc
Confidence            45566667899999999999999999999     9999999999999988543

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.08  E-value=6.3e-11  Score=86.17  Aligned_cols=49  Identities=27%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..+
T Consensus       127 LSGG~kQRvaiAral~~~P~illlDEPts~-----LD~~~~~~i~~~i~~l~~~  175 (240)
T d2onka1         127 LSGGERQRVALARALVIQPRLLLLDEPLSA-----VDLKTKGVLMEELRFVQRE  175 (240)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSSBEEESTTSS-----CCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccCCceEecCcccc-----CCHHHHHHHHHHHHHHHHh
Confidence            345566668899999999999999999999     9999999999999988654

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.07  E-value=1.4e-10  Score=84.05  Aligned_cols=49  Identities=18%  Similarity=0.212  Sum_probs=43.7

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+.....+.+.++++.++
T Consensus       146 LSGGqkQRvaIAraL~~~P~lLllDEPTs~-----LD~~~~~~i~~~l~~l~~~  194 (230)
T d1l2ta_         146 LSGGQQQRVAIARALANNPPIILADQPTGA-----LDSKTGEKIMQLLKKLNEE  194 (230)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHhhhhcCCCEEEecCCccc-----cCHHHHHHHHHHHHHHHHh
Confidence            346666778899999999999999999999     9999999999999998654

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.06  E-value=2.4e-10  Score=83.20  Aligned_cols=49  Identities=22%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      -+|-+.....|++++..+|++.++|||+++     +|+....++.+.++++.++
T Consensus       141 LSGGqkQRvaiARaL~~~P~llllDEPt~~-----LD~~~~~~i~~~i~~l~~~  189 (242)
T d1oxxk2         141 LSGAQQQRVALARALVKDPSLLLLDEPFSN-----LDARMRDSARALVKEVQSR  189 (242)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----SCGGGHHHHHHHHHHHHHH
T ss_pred             CCHHHHhHHHHHhHHhhcccceeecCCccC-----CCHHHHHHHHHHHHHHHhc
Confidence            346666678899999999999999999999     9999999999999988654

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.05  E-value=8.7e-11  Score=86.84  Aligned_cols=55  Identities=9%  Similarity=0.160  Sum_probs=46.2

Q ss_pred             ecccCCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          152 ISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       152 ~s~~~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      ++.++|  -+.....|++++..+|++.++|||+.+     +|+....++.+.++++++++.+
T Consensus       148 ~~~LSg--G~~Qrv~iAraL~~~P~llilDEPt~g-----LD~~~~~~i~~~i~~l~~~g~t  202 (254)
T d1g6ha_         148 AGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAG-----VAPGLAHDIFNHVLELKAKGIT  202 (254)
T ss_dssp             GGGSCH--HHHHHHHHHHHHHTCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHHHTTCE
T ss_pred             hhhCCc--HHHHHHHHHHHHHhCcCchhhcCCccc-----CCHHHHHHHHHHHHHHHHCCCE
Confidence            444544  444456799999999999999999999     9999999999999999877653

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.03  E-value=6.5e-10  Score=79.20  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          159 NFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       159 gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      |-+.....|++++..+|++.++|||+.+     +|+.....+.+.+.++..
T Consensus       128 gG~~qrv~ia~al~~~~~llllDEPt~g-----LD~~~~~~i~~~l~~~~~  173 (200)
T d1sgwa_         128 QGTIRRVQLASTLLVNAEIYVLDDPVVA-----IDEDSKHKVLKSILEILK  173 (200)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEEESTTTT-----SCTTTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhcCCCEEEEcCcccc-----cCHHHHHHHHHHHHHHHh
Confidence            4455567799999999999999999999     999999888888877654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.02  E-value=2e-10  Score=84.93  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=44.4

Q ss_pred             CChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCCC
Q 027607          158 YNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLP  213 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (221)
                      +|-+.....|++++..+|++.++|||+.+     +|+....++.+.+++++.++.+
T Consensus       151 SGG~~QRv~iAraL~~~P~llilDEPT~g-----LD~~~~~~i~~ll~~l~~~g~t  201 (258)
T d1b0ua_         151 SGGQQQRVSIARALAMEPDVLLFDEPTSA-----LDPELVGEVLRIMQQLAEEGKT  201 (258)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTT-----SCHHHHHHHHHHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEecccccc-----CCHHHHHHHHHhhhhhcccCCc
Confidence            34455557799999999999999999999     9999999999999999887653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=2.5e-10  Score=83.21  Aligned_cols=50  Identities=20%  Similarity=0.207  Sum_probs=44.2

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQ  210 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (221)
                      .-+|-+.....|++++..+|++.++|||+++     +|+....++.+.++++..+
T Consensus       140 ~LSGG~~QRvaiAraL~~~P~lLllDEPt~~-----LD~~~~~~i~~~l~~l~~~  189 (240)
T d3dhwc1         140 NLSGGQKQRVAIARALASNPKVLLCDEATSA-----LDPATTRSILELLKDINRR  189 (240)
T ss_dssp             CCCHHHHHHHHHHHHHHTCCSEEEEESGGGS-----SCHHHHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHhhhhccCCCeEEecccccc-----CCHHHhhHHHHHHHHHHhc
Confidence            3346666678899999999999999999999     9999999999999998665

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.94  E-value=8.2e-10  Score=83.64  Aligned_cols=85  Identities=18%  Similarity=0.082  Sum_probs=55.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEe--cC---------------cEEEEEEEecCCccc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFT--NC---------------GKIRFYCWDTAGQEK   74 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~i~~~D~~g~~~   74 (221)
                      ..++|+++|.|+||||||+|++..... ......+++|..+....+  ..               ....+.+.|+||...
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~~-~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~   87 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSVL-GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK   87 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTT-TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCCC-CCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccc
Confidence            458999999999999999999764322 223344555544433322  21               124688999998543


Q ss_pred             c----cccccc---ccccccEEEEEEECCC
Q 027607           75 F----GGLRDG---YYIHGQCAIIMFDVTA   97 (221)
Q Consensus        75 ~----~~~~~~---~~~~~d~~i~v~d~~~   97 (221)
                      -    .++-..   .++.+|+++.|+|+.+
T Consensus        88 gA~~g~GLGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          88 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred             ccccccccHHHHHHHhhccceeEEEEeccC
Confidence            2    222223   3678999999999865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=1.1e-10  Score=85.35  Aligned_cols=49  Identities=12%  Similarity=0.209  Sum_probs=44.0

Q ss_pred             CCCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          156 SNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       156 ~~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      .-.|-+.....|+++++.+|++.++|||+++     +|+...+.+.+.++++..
T Consensus       139 ~LSGGq~QRvalARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  187 (241)
T d2pmka1         139 GLSGGQRQRIAIARALVNNPKILIFDEATSA-----LDYESEHVIMRNMHKICK  187 (241)
T ss_dssp             CCCHHHHHHHHHHHHHTTCCSEEEECCCCSC-----CCHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHhhhhhhhcccchhhhhCCccc-----cCHHHHHHHHHHHHHHhC
Confidence            3456677888999999999999999999999     999999999999998865

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.91  E-value=5.1e-09  Score=79.28  Aligned_cols=68  Identities=9%  Similarity=0.070  Sum_probs=42.9

Q ss_pred             EEEEEecCCccccc-------------ccccccccccc-EEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027607           63 RFYCWDTAGQEKFG-------------GLRDGYYIHGQ-CAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        63 ~i~~~D~~g~~~~~-------------~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (221)
                      .+.++|+||.....             .+...|+...+ ++++|.++...........+...+...  ..++++|+||+|
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~~--~~r~i~Vltk~D  203 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQ--GQRTIGVITKLD  203 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTT--CSSEEEEEECGG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCcC--CCceeeEEeccc
Confidence            37899999953221             22334555565 556677776665555555555544332  568999999999


Q ss_pred             cCCc
Q 027607          129 VKNR  132 (221)
Q Consensus       129 ~~~~  132 (221)
                      ..+.
T Consensus       204 ~~~~  207 (299)
T d2akab1         204 LMDE  207 (299)
T ss_dssp             GSCT
T ss_pred             cccc
Confidence            8654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.88  E-value=1.1e-09  Score=81.93  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=37.9

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeEEEecCcEEEEEEEecCCc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ   72 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~   72 (221)
                      .....++|+|+|.||||||||+|++.. .......+.+|+|.....+..+.   .+.++||||.
T Consensus       108 ~~~~~~~v~vvG~PNvGKSsliN~L~~-~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         108 VKPRAIRALIIGIPNVGKSTLINRLAK-KNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             CCCCCEEEEEEESTTSSHHHHHHHHHT-SCCC------------CCEEETT---TEEEEECCCC
T ss_pred             CCCCceEEEEEecCccchhhhhhhhhc-cceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            345679999999999999999999664 44556788889888776665544   3889999995

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.84  E-value=1.2e-08  Score=75.12  Aligned_cols=48  Identities=17%  Similarity=0.209  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       153 LSGGqkQRvaiARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  200 (253)
T d3b60a1         153 LSGGQRQRIAIARALLRDSPILILDEATSA-----LDTESERAIQAALDELQK  200 (253)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEETTTSS-----CCHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEecccccc-----CCHHHHHHHHHHHHHhcc
Confidence            345577778899999999999999999999     999999999999998865

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.84  E-value=2.4e-09  Score=80.33  Aligned_cols=81  Identities=19%  Similarity=0.082  Sum_probs=49.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccCCcccCCcceeeeeeE--EEecC-------------cE--EEEEEEecCCcc---
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLD--FFTNC-------------GK--IRFYCWDTAGQE---   73 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~-------------~~--~~i~~~D~~g~~---   73 (221)
                      +||+++|.|+||||||++++.....  ...+.+.+|..+..  +.+..             +.  ..+.++|+||.-   
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~--~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga   80 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI--EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC--ccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCc
Confidence            7999999999999999999775442  12222222222221  22111             11  258899999953   


Q ss_pred             -ccccccccc---cccccEEEEEEECC
Q 027607           74 -KFGGLRDGY---YIHGQCAIIMFDVT   96 (221)
Q Consensus        74 -~~~~~~~~~---~~~~d~~i~v~d~~   96 (221)
                       .-.++...+   ++.+|+++.|+|+.
T Consensus        81 ~~g~Glg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          81 SKGEGLGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred             ccCCCccHHHHHHHHhccceEEEeecc
Confidence             223344444   67899999999874

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=9.2e-10  Score=80.14  Aligned_cols=50  Identities=24%  Similarity=0.204  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHhC-------CCCCccccCCCCCCCccccchHHHHHHHHHHHHhhCCCC
Q 027607          158 YNFEKPFLYLARKLAG-------DPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPL  212 (221)
Q Consensus       158 ~gv~~~~~~l~~~l~~-------~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (221)
                      .|-+.....|++++++       .|++.++|||+++     +|+.....+.+.++++++++.
T Consensus       127 SgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~g-----LD~~~~~~i~~~i~~l~~~g~  183 (231)
T d1l7vc_         127 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS-----LDVAQQSALDKILSALCQQGL  183 (231)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTT-----CCHHHHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCC-----CCHHHHHHHHHHHHHHHhCCC
Confidence            4555555779998875       6689999999999     999999999999999988764

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.1e-09  Score=80.52  Aligned_cols=48  Identities=23%  Similarity=0.217  Sum_probs=42.6

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       152 LSGGqkQRvaiARal~~~p~ililDEpTs~-----LD~~~~~~i~~~l~~l~~  199 (251)
T d1jj7a_         152 LSGGQRQAVALARALIRKPCVLILDDATSA-----LDANSQLQVEQLLYESPE  199 (251)
T ss_dssp             SCHHHHHHHHHHHHHTTCCSEEEEESTTTT-----CCHHHHHHHHHHHHTCGG
T ss_pred             CChhHceEEEEeeccccCCcEEEecCcCcc-----cChhhHHHHHHHHHHHhh
Confidence            446677788999999999999999999999     999999999999987654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.82  E-value=9.1e-10  Score=80.61  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+++++.+|++.++|||+++     +|....+.+.+.++++..
T Consensus       140 LSGGqkQRv~iARal~~~p~ililDEpts~-----LD~~~~~~i~~~l~~l~~  187 (242)
T d1mv5a_         140 ISGGQRQRLAIARAFLRNPKILMLDEATAS-----LDSESESMVQKALDSLMK  187 (242)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSEEEEECCSCS-----SCSSSCCHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEecCCccc-----cCHHHHHHHHHHHHHHcC
Confidence            356677778899999999999999999999     999999999999998864

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.81  E-value=7.4e-09  Score=78.62  Aligned_cols=69  Identities=13%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             EEEEEecCCcccc-------------ccccccccccccEEEEEE-ECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027607           63 RFYCWDTAGQEKF-------------GGLRDGYYIHGQCAIIMF-DVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        63 ~i~~~D~~g~~~~-------------~~~~~~~~~~~d~~i~v~-d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (221)
                      .+.++|+||....             ..+...|+.+++.+++++ ++.....-.....+...+..  ....+++|+||+|
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~--~~~r~i~Vitk~D  209 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP--EGKRTIGVITKLD  209 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS--SCSSEEEEEECTT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc--CCCeEEEEEeccc
Confidence            4789999995321             123455677888765554 55444444444445444432  2568999999999


Q ss_pred             cCCcc
Q 027607          129 VKNRQ  133 (221)
Q Consensus       129 ~~~~~  133 (221)
                      ...+.
T Consensus       210 ~~~~~  214 (306)
T d1jwyb_         210 LMDKG  214 (306)
T ss_dssp             SSCSS
T ss_pred             cccch
Confidence            76543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=2.7e-08  Score=74.28  Aligned_cols=43  Identities=21%  Similarity=0.194  Sum_probs=36.8

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHH
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAEL  204 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~  204 (221)
                      -.|-+.....|+++++.+|+++++|||+++     +|+.....+.+.+
T Consensus       159 LSgGqkQRv~lARaL~~~p~illLDEPts~-----LD~~~~~~i~~~~  201 (281)
T d1r0wa_         159 LSGGQRARISLARAVYKDADLYLLDSPFGY-----LDVFTEEQVFESC  201 (281)
T ss_dssp             SCHHHHHHHHHHHHHHSCCSEEEEESCCCS-----SCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhCccchhhcCcccc-----CCHHHHHHHHHHH
Confidence            356677778899999999999999999999     9998887776543

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=1.2e-09  Score=80.52  Aligned_cols=48  Identities=19%  Similarity=0.248  Sum_probs=42.9

Q ss_pred             CCChHHHHHHHHHHHhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          157 NYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       157 ~~gv~~~~~~l~~~l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      -.|-+.....|+|+++.+|++.++|||+++     +|+.....+.+.++++..
T Consensus       155 LSgGq~QRi~iARal~~~p~ililDEpts~-----LD~~t~~~i~~~l~~l~~  202 (255)
T d2hyda1         155 LSGGQKQRLSIARIFLNNPPILILDEATSA-----LDLESESIIQEALDVLSK  202 (255)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSEEEEESTTTT-----CCHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEeCcccc-----CCHHHHHHHHHHHHHHhc
Confidence            345677778899999999999999999999     999999999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=9.6e-08  Score=68.45  Aligned_cols=60  Identities=17%  Similarity=0.128  Sum_probs=35.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCccC--CcccCC----cceeeeeeEEEecCcEEEEEEEecCCccccc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGEFE--KKYEPT----IGVEVHPLDFFTNCGKIRFYCWDTAGQEKFG   76 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~i~~~D~~g~~~~~   76 (221)
                      -+.+++|.+|||||||+|+|+.....  ...+..    ..+|.....+.+..+   -.++||||...+.
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~g---g~iiDTPG~r~~~  161 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFG---GYVVDTPGFANLE  161 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTS---CEEESSCSSTTCC
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCC---cEEEeCCcccccc
Confidence            46799999999999999997643221  111111    113444444455443   3678999975543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.40  E-value=7.8e-07  Score=66.08  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=67.7

Q ss_pred             ccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCC
Q 027607           80 DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYN  159 (221)
Q Consensus        80 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~g  159 (221)
                      ...+..+|++++|+|+.++.+..+.  .+..+   ..++|.++|+||+|+.+.....+..+.....+...+.+|+.++.|
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~~--~l~~~---~~~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~   84 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRNP--MIEDI---LKNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQG   84 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSCH--HHHHH---CSSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCCH--HHHHH---HcCCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCC
Confidence            3457899999999999998776552  22222   247899999999999887777777777777788899999999999


Q ss_pred             hHHHHHHHHHHH
Q 027607          160 FEKPFLYLARKL  171 (221)
Q Consensus       160 v~~~~~~l~~~l  171 (221)
                      ...+...+.+.+
T Consensus        85 ~~~~~~~~~~~l   96 (273)
T d1puja_          85 LNQIVPASKEIL   96 (273)
T ss_dssp             GGGHHHHHHHHH
T ss_pred             ccccchhhhhhh
Confidence            987777666544

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.30  E-value=1.4e-07  Score=67.82  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      -+.+++|++|||||||+|+|+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            46689999999999999997754

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.26  E-value=4.3e-07  Score=64.58  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=53.6

Q ss_pred             EEEEEEecCCcccccc--c-c---ccc--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           62 IRFYCWDTAGQEKFGG--L-R---DGY--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~--~-~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                      ..+.++||+|...+..  . .   ..+  ....+-+++|.+++....  ......... ..  -.+--+|+||.|...+ 
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~~~-~~--~~~~~lI~TKlDet~~-  168 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK--AYDLASKFN-QA--SKIGTIIITKMDGTAK-  168 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHH-HH--CTTEEEEEECTTSCSC-
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcc--hHHHHhhhh-cc--cCcceEEEecccCCCc-
Confidence            4689999999644332  1 1   111  123567888999876532  222222221 11  2234577999996543 


Q ss_pred             ccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607          134 VKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       134 ~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                       .-.........++++..++  +|+++++
T Consensus       169 -~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         169 -GGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             -HHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             -ccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence             3456677788888877776  4666643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.24  E-value=1.9e-07  Score=66.23  Aligned_cols=91  Identities=10%  Similarity=0.040  Sum_probs=51.3

Q ss_pred             EEEEEEecCCcccccccc----ccc---c-----ccccEEEEEEECCChhh-hccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027607           62 IRFYCWDTAGQEKFGGLR----DGY---Y-----IHGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~----~~~---~-----~~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (221)
                      ..+.++||+|........    ..+   .     ...+-.++|.|++.... ...+...+..+      .+--+++||.|
T Consensus        89 ~d~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~------~~~~lI~TKlD  162 (207)
T d1okkd2          89 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV------GLTGVIVTKLD  162 (207)
T ss_dssp             CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH------CCSEEEEECTT
T ss_pred             CCEEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc------CCceEEEeccC
Confidence            468999999964332211    111   1     13467889999886642 22222222222      23356889999


Q ss_pred             cCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607          129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ...+  .-.........++++..++.  |+++++
T Consensus       163 et~~--~G~~l~~~~~~~~Pi~~i~~--Gq~p~D  192 (207)
T d1okkd2         163 GTAK--GGVLIPIVRTLKVPIKFVGV--GEGPDD  192 (207)
T ss_dssp             SSCC--CTTHHHHHHHHCCCEEEEEC--SSSTTC
T ss_pred             CCCC--ccHHHHHHHHHCCCEEEEeC--CCChHh
Confidence            6432  33455667777788766653  555543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.23  E-value=2.4e-06  Score=61.01  Aligned_cols=85  Identities=15%  Similarity=0.089  Sum_probs=59.7

Q ss_pred             cccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHh--hcCCeEEEecccCC
Q 027607           81 GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHR--KKNLQYYEISAKSN  157 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~  157 (221)
                      ....+.|.+++|+.+.++. +...+.+++-....  .+.+.++|+||+|+.+.........+..  ..+.+++.+|++++
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~   83 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK--NELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTG   83 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH--TTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--cCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccc
Confidence            3467899999999988764 34445555544443  3899999999999976543333332222  34578899999999


Q ss_pred             CChHHHHHHH
Q 027607          158 YNFEKPFLYL  167 (221)
Q Consensus       158 ~gv~~~~~~l  167 (221)
                      .|++.+...+
T Consensus        84 ~g~~~L~~~l   93 (225)
T d1u0la2          84 MGIEELKEYL   93 (225)
T ss_dssp             TTHHHHHHHH
T ss_pred             hhHhhHHHHh
Confidence            9999877654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.22  E-value=1.3e-06  Score=62.11  Aligned_cols=92  Identities=12%  Similarity=-0.053  Sum_probs=51.6

Q ss_pred             EEEEEEecCCcccccccc----ccc---cc-----cccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCc
Q 027607           62 IRFYCWDTAGQEKFGGLR----DGY---YI-----HGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDV  129 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~----~~~---~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~  129 (221)
                      ..+.++||+|........    ..+   ..     ..+-.++|.+++...  +.+......+..   -.+--+|++|.|.
T Consensus        94 ~d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~--~~~~~~~~~~~~---~~~~~lI~TKlDe  168 (213)
T d1vmaa2          94 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGLVQAKIFKEA---VNVTGIILTKLDG  168 (213)
T ss_dssp             CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHHHHHHHHHHH---SCCCEEEEECGGG
T ss_pred             CCEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccCc--chhhhhhhhccc---cCCceEEEecccC
Confidence            468999999954322211    111   11     146688899987653  222222222211   2345678899996


Q ss_pred             CCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607          130 KNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ..  ..-.........+.++..++  +|+++++
T Consensus       169 ~~--~~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         169 TA--KGGITLAIARELGIPIKFIG--VGEKAED  197 (213)
T ss_dssp             CS--CTTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CC--cccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            43  23455667777788877765  4666644

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.12  E-value=6.3e-07  Score=61.94  Aligned_cols=22  Identities=45%  Similarity=0.827  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +||+++|++|||||||++.++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            4899999999999999998664

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=9.6e-07  Score=62.64  Aligned_cols=91  Identities=12%  Similarity=0.044  Sum_probs=51.4

Q ss_pred             EEEEEEecCCccccccc----cccc---cc-----cccEEEEEEECCChhh-hccHHHHHHHHHhhcCCCCEEEEEeCCC
Q 027607           62 IRFYCWDTAGQEKFGGL----RDGY---YI-----HGQCAIIMFDVTARLT-YKNVPTWHRDLCRVCENIPIVLCGNKVD  128 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~----~~~~---~~-----~~d~~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~p~ivv~nK~D  128 (221)
                      ..+.++||+|.......    ...+   +.     ..+-.++|.|++.... .......+..      -.+--+++||.|
T Consensus        92 ~d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~------~~~~~lIlTKlD  165 (211)
T d2qy9a2          92 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEA------VGLTGITLTKLD  165 (211)
T ss_dssp             CSEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHH------SCCCEEEEECCT
T ss_pred             CCEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhc------cCCceEEEeecC
Confidence            46789999995332111    0111   11     2467888999876532 2222221111      234467889999


Q ss_pred             cCCccccHHHHHHHhhcCCeEEEecccCCCChHH
Q 027607          129 VKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEK  162 (221)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~  162 (221)
                      ...+  .-.........++++..++  +|+++++
T Consensus       166 e~~~--~G~~l~~~~~~~~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         166 GTAK--GGVIFSVADQFGIPIRYIG--VGERIED  195 (211)
T ss_dssp             TCTT--TTHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             CCCC--ccHHHHHHHHHCCCEEEEe--CCCCccc
Confidence            6543  3455667777788877765  5666643

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.95  E-value=3.3e-06  Score=60.51  Aligned_cols=84  Identities=13%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             cccccccEEEEEEECCChh-hhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHH----HHHHHhhcCCeEEEeccc
Q 027607           81 GYYIHGQCAIIMFDVTARL-TYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAK----QVTFHRKKNLQYYEISAK  155 (221)
Q Consensus        81 ~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~s~~  155 (221)
                      ....+.|.+++|+++.++. +...+.+++-....  .+.+.++|+||+|+.+.....+    ........+.+++.+|+.
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~--~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~   83 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSK   83 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH--cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecC
Confidence            3457899999999998764 44445555544433  4889999999999976433222    223455668899999999


Q ss_pred             CCCChHHHHHH
Q 027607          156 SNYNFEKPFLY  166 (221)
Q Consensus       156 ~~~gv~~~~~~  166 (221)
                      ++.|++++...
T Consensus        84 ~~~gl~~L~~~   94 (231)
T d1t9ha2          84 DQDSLADIIPH   94 (231)
T ss_dssp             HHTTCTTTGGG
T ss_pred             ChhHHHHHHHh
Confidence            99888776543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.94  E-value=2.2e-06  Score=60.67  Aligned_cols=85  Identities=14%  Similarity=0.052  Sum_probs=49.0

Q ss_pred             EEEEEEecCCcccccccccc----c--cccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcccc
Q 027607           62 IRFYCWDTAGQEKFGGLRDG----Y--YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK  135 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~----~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~  135 (221)
                      ..+.++||+|..........    +  ..+.+-+++|.+++....-..   ....+...  -..--++++|.|...+  .
T Consensus        93 ~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~~~~---~~~~f~~~--~~~~~~I~TKlDe~~~--~  165 (207)
T d1ls1a2          93 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALS---VARAFDEK--VGVTGLVLTKLDGDAR--G  165 (207)
T ss_dssp             CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHH---HHHHHHHH--TCCCEEEEECGGGCSS--C
T ss_pred             CcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchhHHH---HHHHHHhh--CCCCeeEEeecCcccc--c
Confidence            46889999996543321111    1  235678899999876643221   11222221  1233478899996432  3


Q ss_pred             HHHHHHHhhcCCeEEEec
Q 027607          136 AKQVTFHRKKNLQYYEIS  153 (221)
Q Consensus       136 ~~~~~~~~~~~~~~~~~s  153 (221)
                      -.........+.++..++
T Consensus       166 G~~l~~~~~~~~Pi~~i~  183 (207)
T d1ls1a2         166 GAALSARHVTGKPIYFAG  183 (207)
T ss_dssp             HHHHHHHHHHCCCEEEEC
T ss_pred             hHHHHHHHHHCCCEEEEe
Confidence            455667777777776654

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.91  E-value=2.4e-06  Score=59.07  Aligned_cols=23  Identities=22%  Similarity=0.452  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-+|+|.|++|||||||+++|..
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999999553

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.90  E-value=3.5e-06  Score=57.73  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ++..+|+|+|++||||||+.+.|.
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La   26 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIA   26 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHH
Confidence            567999999999999999999854

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=2.8e-05  Score=55.58  Aligned_cols=23  Identities=30%  Similarity=0.401  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      .-++|.|.-|||||||+++++..
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            45789999999999999998864

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=3.7e-06  Score=57.30  Aligned_cols=21  Identities=38%  Similarity=0.531  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -|+|+|++|||||||+++++.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            489999999999999999774

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.84  E-value=4.9e-06  Score=55.72  Aligned_cols=23  Identities=22%  Similarity=0.600  Sum_probs=19.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++ |++.|++|||||||+++|+.
T Consensus         2 kkl-Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           2 KKI-ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             CEE-EEEECCTTSSHHHHHHHHHH
T ss_pred             CEE-EEEECCCCCCHHHHHHHHHH
Confidence            444 78899999999999998653

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.80  E-value=4.4e-06  Score=57.02  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+|+|+|++||||||+.+.|..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999998653

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.3e-06  Score=57.88  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |+|+||+|||||||+++|+..
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999997743

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.2e-05  Score=55.27  Aligned_cols=32  Identities=38%  Similarity=0.584  Sum_probs=24.4

Q ss_pred             CCCC-CcccCCceEEEEEcCCCCcHHHHHHHHh
Q 027607            3 LPNQ-QTVDYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus         3 ~~~~-~~~~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +|++ ....++..=|+++|.+||||||+.++++
T Consensus         3 ~p~~~~~~~~~p~liil~G~pGsGKST~a~~l~   35 (172)
T d1yj5a2           3 LPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHL   35 (172)
T ss_dssp             BSTTSCSSCSSCCEEEEECCTTSSHHHHHHHHT
T ss_pred             CCCccccCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            4443 3455556778899999999999999865

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.74  E-value=8.4e-06  Score=56.84  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-++|+++|+|||||||+.+.|.
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La   24 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLA   24 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHH
Confidence            56899999999999999999855

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.71  E-value=1.2e-05  Score=56.20  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.+-++|+|+|+|||||||+.+.|..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHH
Confidence            44678999999999999999998664

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.2e-05  Score=55.38  Aligned_cols=21  Identities=33%  Similarity=0.550  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .||+|+|+|||||||+.+.|.
T Consensus         1 m~I~i~G~pGSGKsT~a~~La   21 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIV   21 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999754

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=1.2e-05  Score=54.72  Aligned_cols=20  Identities=30%  Similarity=0.518  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      |+|+|.+|||||||+++++.
T Consensus         4 i~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            57999999999999999763

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=5.3e-06  Score=57.82  Aligned_cols=21  Identities=43%  Similarity=0.762  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |+|+||+|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            899999999999999997643

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.62  E-value=1.2e-05  Score=56.00  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|+|++||||||+.+.|.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La   24 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIK   24 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999999854

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.61  E-value=1.6e-05  Score=54.95  Aligned_cols=22  Identities=23%  Similarity=0.463  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++|+|+|++||||||+.+.|..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999998553

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.57  E-value=2.3e-05  Score=54.70  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +...|+|+|++||||||+.+.|..
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            336789999999999999998653

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.56  E-value=2e-05  Score=54.44  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+|+|+|+|||||||+.+.|..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999998553

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.56  E-value=2.2e-05  Score=54.20  Aligned_cols=22  Identities=32%  Similarity=0.522  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .++|+|+|++||||||+.+.|.
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La   23 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQ   23 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999855

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=2e-05  Score=54.27  Aligned_cols=21  Identities=19%  Similarity=0.389  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +||+|+|++||||||..+.|.
T Consensus         1 m~I~i~G~pGSGKsT~~~~La   21 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIM   21 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999855

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.54  E-value=2e-05  Score=53.54  Aligned_cols=19  Identities=42%  Similarity=0.641  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027607           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~   34 (221)
                      |+|.|++||||||+.++|.
T Consensus         5 I~i~G~~GsGKTTva~~L~   23 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLA   23 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8899999999999999865

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=6.9e-06  Score=56.94  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      |+++||+|||||||++.|..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999998654

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=2.2e-05  Score=53.86  Aligned_cols=21  Identities=29%  Similarity=0.578  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|.|.|++|+|||||++.+..
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998664

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.3e-05  Score=52.68  Aligned_cols=20  Identities=30%  Similarity=0.536  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|.++|++||||||+.+.|.
T Consensus         4 ~I~l~G~~GsGKSTvak~La   23 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLA   23 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            68999999999999999854

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.48  E-value=4.1e-05  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.277  Sum_probs=20.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..+-|+|-|++|||||||.++|.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            56789999999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=9.7e-05  Score=54.48  Aligned_cols=64  Identities=19%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCccCCc-----ccCCcceeeeeeEEEecCcEEEEEEEecCCccc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKK-----YEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK   74 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~~~D~~g~~~   74 (221)
                      ..|-.-|+|+|+.++|||+|+|.+++....-.     ...|.|.-.....+ ..+....+.++||.|...
T Consensus        29 ~~~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~-~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          29 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPH-PKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEEC-SSSTTCEEEEEEECCBCC
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeec-cCCCCceEEEEecccccc
Confidence            34566899999999999999999876543211     22344433222222 133456788999999643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=1.4e-05  Score=56.52  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |+|+||+|||||||+++|+..
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999997753

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=1.2e-05  Score=56.17  Aligned_cols=20  Identities=35%  Similarity=0.735  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      |+|+||+|||||||+++|+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999998654

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=4.7e-05  Score=52.97  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.|+|+|++||||||..+.|..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998653

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.39  E-value=4.7e-05  Score=54.16  Aligned_cols=25  Identities=24%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++.++|+|-||+||||||..+.|..
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHH
Confidence            4668999999999999999998553

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.39  E-value=4e-05  Score=53.92  Aligned_cols=21  Identities=33%  Similarity=0.354  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-|+++|.|||||||+.++|.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999999865

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.39  E-value=7.5e-05  Score=50.04  Aligned_cols=28  Identities=32%  Similarity=0.390  Sum_probs=23.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      .+-.-|++-|+-|||||||++.++.+..
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            3456789999999999999999886544

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=3.6e-05  Score=52.25  Aligned_cols=21  Identities=43%  Similarity=0.520  Sum_probs=18.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+|+++|++||||||+.+.+.
T Consensus         2 p~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999754

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.37  E-value=4.5e-05  Score=52.38  Aligned_cols=20  Identities=30%  Similarity=0.410  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      -|+|.|++||||||+++.|.
T Consensus         3 iI~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999999854

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.35  E-value=4.6e-05  Score=51.52  Aligned_cols=20  Identities=30%  Similarity=0.546  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      +|+++|++||||||+.+.+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La   21 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALA   21 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            58999999999999999854

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.34  E-value=5.1e-05  Score=51.49  Aligned_cols=22  Identities=23%  Similarity=0.409  Sum_probs=18.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      --++++|++||||||+.+.|..
T Consensus         7 ~iivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           7 HIYVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4467899999999999998653

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=8.3e-05  Score=51.81  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.|+|+|++||||||+.+.|..
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445689999999999999998653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.31  E-value=6.8e-05  Score=51.14  Aligned_cols=23  Identities=17%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-+.|.++|.+||||||+.+.|.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            34789999999999999998854

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.30  E-value=5.7e-05  Score=51.42  Aligned_cols=21  Identities=29%  Similarity=0.507  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -|++.|++||||||+.+.+..
T Consensus         6 iI~l~G~~GsGKSTia~~La~   26 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALAN   26 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            378999999999999998543

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.24  E-value=7.7e-05  Score=50.70  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -|++.|++||||||+.+.|..
T Consensus         5 iI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            366779999999999998553

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.21  E-value=0.00011  Score=53.76  Aligned_cols=22  Identities=23%  Similarity=0.421  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      --|++.|+||+|||||.+++..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999998654

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.20  E-value=7.7e-05  Score=51.66  Aligned_cols=25  Identities=24%  Similarity=0.314  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +.+-..|.++|.+||||||+.+.|.
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            4455688999999999999999854

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.17  E-value=9.4e-05  Score=51.48  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=18.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|.|+|+|||||||+.+.|..
T Consensus         9 ~iI~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_           9 KIIFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999998653

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00014  Score=51.40  Aligned_cols=22  Identities=18%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+-|+|.|++|||||||.+.|.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~   23 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIV   23 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999854

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.14  E-value=0.00011  Score=50.08  Aligned_cols=20  Identities=30%  Similarity=0.444  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .|.++|++||||||+.+.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHH
Confidence            37789999999999999854

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.02  E-value=0.00015  Score=52.00  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..+++.||||+||||+++.+..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHh
Confidence            3689999999999999998653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.02  E-value=0.00015  Score=54.73  Aligned_cols=21  Identities=33%  Similarity=0.727  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+|+|.|++|||||||+++++
T Consensus       167 ~nili~G~tgSGKTT~l~al~  187 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIM  187 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHG
T ss_pred             CCEEEEeeccccchHHHHHHh
Confidence            469999999999999999976

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.01  E-value=0.00016  Score=51.95  Aligned_cols=22  Identities=32%  Similarity=0.407  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.||||+||||+++.+..
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998653

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.00  E-value=0.00017  Score=49.59  Aligned_cols=20  Identities=30%  Similarity=0.566  Sum_probs=16.6

Q ss_pred             EE-EEEcCCCCcHHHHHHHHh
Q 027607           15 KL-VIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i-~v~G~~gsGKStL~~~l~   34 (221)
                      || +|.|.+||||||+++.|.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            45 567999999999999854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.93  E-value=0.00027  Score=51.11  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +...|++.||+|+|||+|++++.
T Consensus        39 p~~~vLL~GppGtGKT~la~alA   61 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIA   61 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHh
Confidence            34679999999999999999965

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.89  E-value=0.00026  Score=49.12  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=20.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+.+-|+|-|..||||||+++.|.
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTG
T ss_pred             CCceEEEEECCCCCCHHHHHHHHH
Confidence            455789999999999999999743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00029  Score=48.78  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..=+++++|++|+|||+++..+..
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~   65 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHH
Confidence            345899999999999999987553

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.88  E-value=0.00033  Score=50.59  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.+++.||+|+||||+++++..
T Consensus        51 ~~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          51 VFRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999998664

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.86  E-value=0.00029  Score=50.28  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.||+|+||||+++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999998654

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00015  Score=54.41  Aligned_cols=24  Identities=25%  Similarity=0.519  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.|+++||||||||.|.+++..
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHhh
Confidence            446799999999999999999653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.00048  Score=47.53  Aligned_cols=22  Identities=27%  Similarity=0.342  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+-|+|.|.+||||||+++.|.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999754

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.78  E-value=0.00037  Score=50.58  Aligned_cols=23  Identities=26%  Similarity=0.419  Sum_probs=20.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-.++|.|++|+|||++++.+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999998664

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.77  E-value=0.00039  Score=50.80  Aligned_cols=24  Identities=25%  Similarity=0.370  Sum_probs=20.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ..=+++++|++|||||++++.+..
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~   61 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAW   61 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHH
Confidence            345899999999999999988554

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.00037  Score=49.17  Aligned_cols=21  Identities=33%  Similarity=0.460  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -|+|.||+||||||+.+.|..
T Consensus         5 iI~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            678889999999999998553

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.72  E-value=0.00035  Score=51.05  Aligned_cols=20  Identities=35%  Similarity=0.426  Sum_probs=16.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.+.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            45569999999999998664

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.71  E-value=0.00037  Score=50.72  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|+|.|++|+|||||+++++.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHH
Confidence            3688999999999999998663

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00058  Score=50.85  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ....+-|+|.|++|||||||.+.|.
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHH
Confidence            3456999999999999999988743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0001  Score=51.31  Aligned_cols=19  Identities=26%  Similarity=0.504  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027607           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~   34 (221)
                      .+|+|++|||||||+.++.
T Consensus        27 tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          27 TTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHSCCSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            3578999999999999975

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.62  E-value=0.00075  Score=47.40  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..+-..|.+.|.+|||||||.+.|.
T Consensus        21 ~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          21 NQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHH
Confidence            3466789999999999999999865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.00054  Score=48.82  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.||+|+||||+++.++.
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHH
Confidence            489999999999999998764

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.00058  Score=49.34  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|++.||+|+|||+|++++..
T Consensus        43 ~giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHH
Confidence            3699999999999999999663

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00092  Score=49.17  Aligned_cols=25  Identities=16%  Similarity=0.203  Sum_probs=21.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ....+-|+|-|.+|||||||...+.
T Consensus        24 ~~~P~iIGi~G~qGSGKSTl~~~l~   48 (286)
T d1odfa_          24 NKCPLFIFFSGPQGSGKSFTSIQIY   48 (286)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCEEEEeECCCCCCHHHHHHHHH
Confidence            3456899999999999999998653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.00049  Score=49.54  Aligned_cols=21  Identities=38%  Similarity=0.520  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++++.|++|+||||+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999998665

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.49  E-value=0.00074  Score=49.01  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.+++.||+|+|||++++++..
T Consensus        46 ~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHHH
Confidence            4699999999999999998653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.47  E-value=0.00081  Score=46.89  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      -|+|-|..||||||+++.|.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999999754

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00076  Score=47.76  Aligned_cols=20  Identities=40%  Similarity=0.471  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      .+++.||+|+||||+++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            58999999999999999755

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.45  E-value=0.001  Score=46.59  Aligned_cols=22  Identities=23%  Similarity=0.469  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +-|+|.|..||||||+++.|..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            6799999999999999997543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00091  Score=48.59  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -.|++.||+|+|||+|++++..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4699999999999999998653

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.43  E-value=0.00074  Score=47.86  Aligned_cols=21  Identities=33%  Similarity=0.458  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.|++|+||||+++.+..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHH
Confidence            589999999999999998764

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.42  E-value=0.00047  Score=51.20  Aligned_cols=34  Identities=6%  Similarity=0.012  Sum_probs=28.1

Q ss_pred             HhCCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          171 LAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       171 l~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ....+.+.++|||...     +++..++.+.+.+++...
T Consensus       238 ~~~~~~~~~iDEpe~~-----Lhp~~~~~l~~~l~~~~~  271 (308)
T d1e69a_         238 EIKPSPFYVLDEVDSP-----LDDYNAERFKRLLKENSK  271 (308)
T ss_dssp             TTSCCSEEEEESCCSS-----CCHHHHHHHHHHHHHHTT
T ss_pred             hhccCchhhhhhcccc-----CCHHHHHHHHHHHHHhcc
Confidence            3445667888999998     999999999999987764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.42  E-value=0.00043  Score=50.96  Aligned_cols=23  Identities=17%  Similarity=0.267  Sum_probs=16.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +..-|+|.|.+||||||+.++|.
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHH
Confidence            44569999999999999999754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.37  E-value=0.0014  Score=45.79  Aligned_cols=21  Identities=29%  Similarity=0.441  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      +-|+|.|..||||||+++.|-
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999754

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.36  E-value=0.0011  Score=44.96  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      .....-|++.|++|+||||+.-.++..++
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~~~g~   39 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELVQRGH   39 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHHHTTC
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            34456799999999999999999776544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.002  Score=44.82  Aligned_cols=24  Identities=21%  Similarity=0.097  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      -+.|.|++|+|||+|+..++.+..
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~~~   48 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVTCQ   48 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999998775443

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.26  E-value=0.0013  Score=44.66  Aligned_cols=29  Identities=14%  Similarity=0.295  Sum_probs=23.6

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      .....-|++.|++|+||||+.-.++..++
T Consensus        12 ~~~g~gvli~G~sG~GKS~lal~l~~~G~   40 (177)
T d1knxa2          12 EVFGVGVLLTGRSGIGKSECALDLINKNH   40 (177)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHTTTC
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHHcCC
Confidence            44556799999999999999999776544

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.22  E-value=0.053  Score=39.38  Aligned_cols=114  Identities=14%  Similarity=0.162  Sum_probs=54.6

Q ss_pred             EEEEEEecCCccccccccccc-cccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCCE-EEEEeCCCcCCccccHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGY-YIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPI-VLCGNKVDVKNRQVKAK  137 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~-ivv~nK~D~~~~~~~~~  137 (221)
                      +.+.++|+|+.-........+ ...++.++++... +..+...+......+....  ...++ .+|.|+.+.....  ..
T Consensus       119 ~D~iiiD~pp~~~~~~~~~~~~~~~a~~vlv~~~~-~~~s~~~~~~~~~~i~~~~~~~~~~~~gvv~n~~~~~~~~--~~  195 (289)
T d2afhe1         119 LDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSG-EMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNTDRED--EL  195 (289)
T ss_dssp             CSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECS-SHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCCTTHH--HH
T ss_pred             CCeEeeccCCccCHHHHHHHHHhhccceeecccch-hHHHHHHHHHHHHHHHhhhhcccccccceeehhhcchhhH--HH
Confidence            456788887643222221111 1245555555443 3445544545544443322  23443 3788987754321  12


Q ss_pred             HHHHHhhcCCeEEEe---------cccC---------CCChHHHHHHHHHHHhCCCCCc
Q 027607          138 QVTFHRKKNLQYYEI---------SAKS---------NYNFEKPFLYLARKLAGDPNLH  178 (221)
Q Consensus       138 ~~~~~~~~~~~~~~~---------s~~~---------~~gv~~~~~~l~~~l~~~~~~~  178 (221)
                      ...++...+..++.+         +...         +....+-+..|++.+..+++..
T Consensus       196 ~~~~~~~~g~~vl~~IP~~~~v~eA~~~g~pv~~~~p~S~~a~~y~~LA~ei~e~~~~~  254 (289)
T d2afhe1         196 IIALANKLGTQMIHFVPRDNVVQRAEIRRMTVIEYDPKAKQADEYRALARKVVDNKLLV  254 (289)
T ss_dssp             HHHHHHHHTSCEEEEECCCHHHHHHHHTTSCHHHHCTTSHHHHHHHHHHHHHHHCCCCB
T ss_pred             HHHHHHHcCCeEEEEEeccHHHHHHHHcCCceEEECcCCHHHHHHHHHHHHHHcCCCCC
Confidence            223444445444331         0111         2233456777888887776533

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0013  Score=47.91  Aligned_cols=22  Identities=32%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-.|++.|++|+|||+|++++.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala   62 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIA   62 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHH
Confidence            3469999999999999999965

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.19  E-value=0.0017  Score=50.84  Aligned_cols=23  Identities=26%  Similarity=0.540  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .=+|+++||+|||||-|.++|..
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHH
Confidence            34899999999999999999543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.15  E-value=0.0014  Score=45.91  Aligned_cols=19  Identities=42%  Similarity=0.464  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027607           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~   34 (221)
                      |+|-|..||||||+++.|.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999999754

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.14  E-value=0.019  Score=40.25  Aligned_cols=72  Identities=11%  Similarity=0.093  Sum_probs=44.9

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCCEE-EEEeCCCcCCccccHHH
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV-LCGNKVDVKNRQVKAKQ  138 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~i-vv~nK~D~~~~~~~~~~  138 (221)
                      +.+.++|+++...  ......+..+|.++++...+ ..++.........+.+  .+.|++ +|+|+.+..++......
T Consensus       112 ~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~--~~~~~~giv~N~~~~~~~~~~~~~  184 (237)
T d1g3qa_         112 FDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK--AGLAILGFVLNRYGRSDRDIPPEA  184 (237)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH--TTCEEEEEEEEEETSCTTCCCHHH
T ss_pred             CCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh--hhhhhhhhhhcccccccchhhhHH
Confidence            4678888877532  22233456789999988865 4455555555554443  366765 78999987655544433

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.07  E-value=0.0018  Score=43.71  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=24.2

Q ss_pred             ccCCceEEEEEcCCCCcHHHHHHHHhcCcc
Q 027607            9 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus         9 ~~~~~~~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      ......-|++.|++|+||||+.-.++...+
T Consensus        11 v~~~g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          11 VDVYGVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             EEETTEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            344567899999999999999988776654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.07  E-value=0.0018  Score=49.42  Aligned_cols=24  Identities=25%  Similarity=0.217  Sum_probs=20.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.-.+++.||||+|||+|.+++..
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~  176 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLE  176 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHH
Confidence            445799999999999999998653

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0014  Score=50.69  Aligned_cols=32  Identities=13%  Similarity=0.163  Sum_probs=26.7

Q ss_pred             CCCCCccccCCCCCCCccccchHHHHHHHHHHHHhhC
Q 027607          173 GDPNLHFVESPALAPPEVQIDLAAQQQHEAELAAAAS  209 (221)
Q Consensus       173 ~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~~~~~~~  209 (221)
                      ...++.++|||..+     +|+.....+.+.+.++..
T Consensus       353 ~~~pililDE~d~~-----Ld~~~~~~~~~~l~~~~~  384 (427)
T d1w1wa_         353 QPSPFFVLDEVDAA-----LDITNVQRIAAYIRRHRN  384 (427)
T ss_dssp             SCCSEEEESSTTTT-----CCHHHHHHHHHHHHHHCB
T ss_pred             CCCCEEEEeCCCCC-----CCHHHHHHHHHHHHHHhC
Confidence            34457889999999     999999999999987654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0026  Score=47.49  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=20.9

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|.-.++++||+|||||.|.+.+.
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchhHHHHHHHH
Confidence            4455579999999999999999854

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0017  Score=45.49  Aligned_cols=19  Identities=26%  Similarity=0.457  Sum_probs=16.4

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027607           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~   34 (221)
                      |+|-|+.||||||+++.|.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7888999999999888743

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.00  E-value=0.0024  Score=46.81  Aligned_cols=24  Identities=33%  Similarity=0.607  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHhc
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ...-|+|.|..|+|||||++.++.
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            445789999999999999998654

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.97  E-value=0.002  Score=49.18  Aligned_cols=25  Identities=20%  Similarity=0.474  Sum_probs=21.4

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..+.-+++++||+|||||-|.++|.
T Consensus        65 ~~p~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          65 ELSKSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             TCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred             cCCCcceeeeCCCCccHHHHHHHHH
Confidence            4466779999999999999999854

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0013  Score=46.82  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      .|+|-|+.||||||+++. +...+
T Consensus         4 ~I~ieG~dGsGKST~~~~-L~~~l   26 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNI-LKQLC   26 (241)
T ss_dssp             EEEEECSTTSSHHHHHTT-TGGGC
T ss_pred             EEEEECCCCCCHHHHHHH-HHHHH
Confidence            589999999999999997 44433

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.88  E-value=0.0014  Score=50.33  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHh
Q 027607           14 FKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~   34 (221)
                      =+++++|++|||||++++.|.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la   64 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLA   64 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHH
Confidence            457999999999999986543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.88  E-value=0.0022  Score=45.55  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~   37 (221)
                      -+.|.|++|+|||+|+..++...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            57899999999999999877544

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.86  E-value=0.001  Score=50.10  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      +|+++|++|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            69999999999999999864

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.85  E-value=0.0039  Score=44.46  Aligned_cols=24  Identities=21%  Similarity=0.194  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCcc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGEF   38 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~~   38 (221)
                      -+.|.|++|+|||+|...++.+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhh
Confidence            578999999999999998775543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.73  E-value=0.0026  Score=49.17  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      =|+|.|++||||||.++.++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            3899999999999999997753

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=95.58  E-value=0.0022  Score=48.14  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++-++|+|=|+-||||||+++.+..
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4558999999999999999998553

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.57  E-value=0.0032  Score=44.80  Aligned_cols=20  Identities=45%  Similarity=0.577  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      -|+|=|.-||||||+++.|.
T Consensus         4 ~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            58899999999999999854

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.53  E-value=0.0035  Score=44.59  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      --++|.|++|+|||+|+.++..+
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            45789999999999999987755

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0072  Score=42.97  Aligned_cols=24  Identities=21%  Similarity=0.092  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcCc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~~   37 (221)
                      =-+.|.|++|+|||+|..+++.+.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999987543

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.47  E-value=0.0038  Score=43.83  Aligned_cols=20  Identities=35%  Similarity=0.512  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      +.+.|++|+|||.|++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999999664

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=95.36  E-value=0.0047  Score=46.05  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=16.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++.|+||+|||.|.+++-.
T Consensus       126 ~l~~G~pG~GKT~la~ala~  145 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGE  145 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHH
Confidence            45579999999999998553

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.34  E-value=0.004  Score=43.00  Aligned_cols=25  Identities=28%  Similarity=0.296  Sum_probs=21.3

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHhc
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      +++=.+++.||+++|||.|+.+++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~   75 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIH   75 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCccHHHHHHHHHH
Confidence            4567899999999999999998663

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0045  Score=43.40  Aligned_cols=19  Identities=37%  Similarity=0.345  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q 027607           16 LVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~   34 (221)
                      |+|-|..||||||+++.|.
T Consensus         6 I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8899999999999999744

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.21  E-value=0.005  Score=43.65  Aligned_cols=23  Identities=22%  Similarity=0.229  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcCc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTGE   37 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~~   37 (221)
                      -+.|.|++|+|||+|+..+..+.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            47899999999999999877543

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=95.08  E-value=0.0061  Score=45.60  Aligned_cols=22  Identities=32%  Similarity=0.406  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -++|+|=|+-||||||+++.|.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            4689999999999999999854

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.07  E-value=0.0066  Score=42.27  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -+++.|++|+||||+++.+..
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999997554

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.02  E-value=0.0077  Score=45.13  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=20.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      .-++|.|=|+-||||||+++.|.
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~   27 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMA   27 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCccCCHHHHHHHHH
Confidence            35899999999999999999854

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.02  E-value=0.0066  Score=43.12  Aligned_cols=21  Identities=19%  Similarity=0.245  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .|+|.|..||||||+.+.|..
T Consensus         3 iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999997543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0067  Score=43.17  Aligned_cols=21  Identities=24%  Similarity=0.414  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .+++.|++|+||||+++.+..
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            378899999999999998653

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.87  E-value=0.0071  Score=42.48  Aligned_cols=22  Identities=36%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhc
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      --+.|.|++|+|||+|+..++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4577889999999999877553

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.0068  Score=46.99  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHhc
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~~   35 (221)
                      .-+++|+|.+|||||++++.++.
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEEEeCCCCcHHHHHHHHHH
Confidence            34699999999999999987663

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.70  E-value=0.012  Score=43.83  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=20.0

Q ss_pred             cCCceEEEEEcCCCCcHHHHHHHHh
Q 027607           10 DYPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        10 ~~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..|.-.++++||+|+|||.+.+.+.
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la   74 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLA   74 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHH
Confidence            3444468899999999999999754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.64  E-value=0.0093  Score=43.26  Aligned_cols=20  Identities=30%  Similarity=0.692  Sum_probs=17.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++|.|++|+|||||+..+..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67999999999999887653

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=94.60  E-value=0.0065  Score=44.60  Aligned_cols=15  Identities=27%  Similarity=0.660  Sum_probs=13.2

Q ss_pred             EEEEcCCCCcHHHHH
Q 027607           16 LVIVGDGGTGKTTFV   30 (221)
Q Consensus        16 i~v~G~~gsGKStL~   30 (221)
                      ++|+|.+||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            789999999999754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.012  Score=43.03  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      |++|+|++|+|||+|+..+..
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHH
Confidence            799999999999999988664

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=94.36  E-value=0.0087  Score=44.27  Aligned_cols=15  Identities=40%  Similarity=0.769  Sum_probs=13.4

Q ss_pred             EEEEcCCCCcHHHHH
Q 027607           16 LVIVGDGGTGKTTFV   30 (221)
Q Consensus        16 i~v~G~~gsGKStL~   30 (221)
                      ++|.|.+||||||.+
T Consensus        27 ~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          27 LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             EEEEECTTSCHHHHH
T ss_pred             EEEEecCCccHHHHH
Confidence            889999999999755

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.04  E-value=0.019  Score=41.61  Aligned_cols=24  Identities=21%  Similarity=0.199  Sum_probs=20.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ++.-.+.+.|++++|||+|++.+.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~  125 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIA  125 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHH
Confidence            456788999999999999999855

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=93.88  E-value=0.015  Score=41.87  Aligned_cols=20  Identities=25%  Similarity=0.419  Sum_probs=16.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++|.|++|+|||+|+-.+..
T Consensus        32 ~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          32 GALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            56899999999999977553

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.70  E-value=0.024  Score=35.48  Aligned_cols=24  Identities=13%  Similarity=0.137  Sum_probs=21.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHh
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      ..-|.|.+-|.+|+|||||.++|.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~   27 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALL   27 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHH
Confidence            345899999999999999999965

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.02  Score=40.63  Aligned_cols=21  Identities=29%  Similarity=0.529  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -++|.|++.+||||+++.+..
T Consensus        43 ~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          43 MLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEeccCchhhHHHHHHHHH
Confidence            478999999999999998543

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.023  Score=42.99  Aligned_cols=18  Identities=56%  Similarity=0.643  Sum_probs=15.4

Q ss_pred             EEEEEcCCCCcHHHHHHH
Q 027607           15 KLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~   32 (221)
                      -++|.|++|+||||++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            478899999999998754

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.36  E-value=0.019  Score=41.31  Aligned_cols=86  Identities=13%  Similarity=0.091  Sum_probs=43.8

Q ss_pred             EEEEEEecCCcccccccc-ccccccccEEEEEEECCChhhhccHHHHHHHHHhhc--CCCC-EEEEEeCCCcCCccccHH
Q 027607           62 IRFYCWDTAGQEKFGGLR-DGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIP-IVLCGNKVDVKNRQVKAK  137 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p-~ivv~nK~D~~~~~~~~~  137 (221)
                      +.+.++|+|+.-...... ......+|.++++... +..++.........+....  .+.+ .-+|.|+.+.....  +.
T Consensus       116 ~D~viiD~p~~~~~~~~~~~~~~~~ad~vliv~~~-~~~sl~~~~~~~~~i~~~~~~~~~~~~~vv~N~~~~~~~~--~~  192 (269)
T d1cp2a_         116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASG-EMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVANEY--EL  192 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECS-SHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSSCCH--HH
T ss_pred             CCEEEeccCCccchhHHHHHHHhhccCceeeccch-hhhHHHHHHHHHHHHHhhccccceeccceEEeeecCCCcc--ch
Confidence            457888987643222221 1122347777777766 4455555444444444332  1222 34788998765432  12


Q ss_pred             HHHHHhhcCCeEE
Q 027607          138 QVTFHRKKNLQYY  150 (221)
Q Consensus       138 ~~~~~~~~~~~~~  150 (221)
                      ...+....+.+++
T Consensus       193 ~~~~~~~~~~~~~  205 (269)
T d1cp2a_         193 LDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHTCCEE
T ss_pred             hhhhHhhcCCeEE
Confidence            2234445555544

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.30  E-value=0.025  Score=39.78  Aligned_cols=20  Identities=30%  Similarity=0.584  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q 027607           16 LVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~   35 (221)
                      ++|.|++.+||||+++++..
T Consensus        38 ~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEESCSSSSHHHHHHHHHH
T ss_pred             EEEECCCccccchhhhhhHH
Confidence            78999999999999998554

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.67  E-value=0.027  Score=40.84  Aligned_cols=22  Identities=27%  Similarity=0.570  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |++++|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            7999999999999998886643

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.039  Score=39.76  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcC
Q 027607           15 KLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      -+.|.|++|+|||||+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            4678999999999999876643

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.01  E-value=0.046  Score=38.96  Aligned_cols=21  Identities=24%  Similarity=0.491  Sum_probs=18.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 027607           13 SFKLVIVGDGGTGKTTFVKRH   33 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l   33 (221)
                      ...|+|.|++|+||+.+.+.+
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~i   43 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLI   43 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHH
T ss_pred             CCCEEEECCCCcCHHHHHHHH
Confidence            345899999999999999974

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=91.72  E-value=0.054  Score=39.25  Aligned_cols=21  Identities=38%  Similarity=0.765  Sum_probs=16.1

Q ss_pred             CCceEEEEEcCCCCcHHHHHHH
Q 027607           11 YPSFKLVIVGDGGTGKTTFVKR   32 (221)
Q Consensus        11 ~~~~~i~v~G~~gsGKStL~~~   32 (221)
                      ++++ |.+.|..|+||||+.-.
T Consensus         7 ~p~~-i~~sGKGGVGKTTvaa~   27 (296)
T d1ihua1           7 IPPY-LFFTGKGGVGKTSISCA   27 (296)
T ss_dssp             CCSE-EEEECSTTSSHHHHHHH
T ss_pred             CCeE-EEEECCCcChHHHHHHH
Confidence            4554 45799999999997654

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.054  Score=39.77  Aligned_cols=16  Identities=50%  Similarity=0.652  Sum_probs=14.0

Q ss_pred             EEEEcCCCCcHHHHHH
Q 027607           16 LVIVGDGGTGKTTFVK   31 (221)
Q Consensus        16 i~v~G~~gsGKStL~~   31 (221)
                      -+++|.+|+|||||-.
T Consensus        17 alfFGLSGTGKTTLs~   32 (313)
T d2olra1          17 AVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEECSTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            3699999999999874

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.07  E-value=0.059  Score=39.71  Aligned_cols=16  Identities=50%  Similarity=0.652  Sum_probs=14.2

Q ss_pred             EEEEcCCCCcHHHHHH
Q 027607           16 LVIVGDGGTGKTTFVK   31 (221)
Q Consensus        16 i~v~G~~gsGKStL~~   31 (221)
                      -+++|.+|+|||||-.
T Consensus        17 alffGLSGTGKTTLs~   32 (318)
T d1j3ba1          17 AVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEECTTSCHHHHTC
T ss_pred             EEEEccCCCCcccccc
Confidence            5899999999999874

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=89.85  E-value=0.068  Score=33.92  Aligned_cols=22  Identities=32%  Similarity=0.455  Sum_probs=16.6

Q ss_pred             ceEE-EEEcCCCCcHHHHHHHHh
Q 027607           13 SFKL-VIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i-~v~G~~gsGKStL~~~l~   34 (221)
                      ++++ +|.++.|+|||+++-.++
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHH
Confidence            3444 669999999999886544

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.59  E-value=0.074  Score=38.65  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      =|++++|.+|+|||+|+..+..+
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHHh
Confidence            37899999999999998776543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.57  E-value=0.073  Score=39.22  Aligned_cols=16  Identities=50%  Similarity=0.640  Sum_probs=14.2

Q ss_pred             EEEEcCCCCcHHHHHH
Q 027607           16 LVIVGDGGTGKTTFVK   31 (221)
Q Consensus        16 i~v~G~~gsGKStL~~   31 (221)
                      -+++|.+|+|||||..
T Consensus        17 alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          17 TVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEECCTTSSHHHHHC
T ss_pred             EEEEccCCCCccccee
Confidence            4699999999999984

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=88.94  E-value=0.12  Score=37.22  Aligned_cols=21  Identities=29%  Similarity=0.262  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q 027607           15 KLVIVGDGGTGKTTFVKRHLT   35 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~~   35 (221)
                      -+.+.|++++|||+|+..++.
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            467899999999999988664

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.83  E-value=0.13  Score=37.04  Aligned_cols=20  Identities=30%  Similarity=0.395  Sum_probs=17.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHh
Q 027607           15 KLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~~~l~   34 (221)
                      -+.+.|++|+|||+|+-.++
T Consensus        62 i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHH
Confidence            46789999999999987655

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.79  E-value=0.13  Score=34.62  Aligned_cols=21  Identities=14%  Similarity=0.430  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhcC
Q 027607           16 LVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        16 i~v~G~~gsGKStL~~~l~~~   36 (221)
                      |+|+|...||||.+..++...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999997643

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=88.56  E-value=0.13  Score=36.79  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=15.8

Q ss_pred             CCceEEEEE-cCCCCcHHHHHHH
Q 027607           11 YPSFKLVIV-GDGGTGKTTFVKR   32 (221)
Q Consensus        11 ~~~~~i~v~-G~~gsGKStL~~~   32 (221)
                      .+..+|+++ |..||||||+.-.
T Consensus        17 ~~~~~iii~sGKGGVGKTT~a~n   39 (279)
T d1ihua2          17 RNEHGLIMLMGKGGVGKTTMAAA   39 (279)
T ss_dssp             TTSCEEEEEECSTTSSHHHHHHH
T ss_pred             cCCCEEEEEECCCCCCHHHHHHH
Confidence            344555555 9999999998644

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=88.16  E-value=0.1  Score=37.75  Aligned_cols=23  Identities=30%  Similarity=0.472  Sum_probs=18.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHhcC
Q 027607           14 FKLVIVGDGGTGKTTFVKRHLTG   36 (221)
Q Consensus        14 ~~i~v~G~~gsGKStL~~~l~~~   36 (221)
                      =|++|+|.+|+|||+|+..+..+
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            36899999999999999764433

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.49  E-value=0.18  Score=34.44  Aligned_cols=21  Identities=24%  Similarity=0.259  Sum_probs=17.0

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHh
Q 027607           14 FKLVIVGDG-GTGKTTFVKRHL   34 (221)
Q Consensus        14 ~~i~v~G~~-gsGKStL~~~l~   34 (221)
                      -|+.|.|-. ||||||+.-.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHH
Confidence            378899996 999999986543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.44  E-value=0.19  Score=34.31  Aligned_cols=22  Identities=9%  Similarity=0.043  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHh
Q 027607           13 SFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        13 ~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      -..+++.|++|+|||++...+.
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~   36 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELP   36 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999998755

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=85.74  E-value=0.25  Score=31.59  Aligned_cols=16  Identities=38%  Similarity=0.569  Sum_probs=13.1

Q ss_pred             EEEcCCCCcHHH-HHHH
Q 027607           17 VIVGDGGTGKTT-FVKR   32 (221)
Q Consensus        17 ~v~G~~gsGKSt-L~~~   32 (221)
                      +++||=.||||| |+++
T Consensus         6 ~i~GpMfsGKTteLi~~   22 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRR   22 (139)
T ss_dssp             EEECSTTSCHHHHHHHH
T ss_pred             EEEccccCHHHHHHHHH
Confidence            468999999999 5554

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=83.69  E-value=0.34  Score=32.54  Aligned_cols=16  Identities=38%  Similarity=0.412  Sum_probs=13.3

Q ss_pred             EEEEEcCCCCcHHHHH
Q 027607           15 KLVIVGDGGTGKTTFV   30 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~   30 (221)
                      ++++++++|+|||...
T Consensus        25 n~lv~~pTGsGKT~i~   40 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIA   40 (200)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEeCCCCcHHHHH
Confidence            5789999999999643

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=83.00  E-value=0.17  Score=31.65  Aligned_cols=19  Identities=26%  Similarity=0.235  Sum_probs=14.3

Q ss_pred             CceEEEEEcCCCCcHHHHH
Q 027607           12 PSFKLVIVGDGGTGKTTFV   30 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~   30 (221)
                      +.-++++.+++|+|||...
T Consensus         6 ~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTH
T ss_pred             cCCcEEEEcCCCCChhHHH
Confidence            3456788899999999433

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.88  E-value=0.39  Score=33.00  Aligned_cols=64  Identities=6%  Similarity=-0.079  Sum_probs=35.7

Q ss_pred             EEEEEEecCCccccccccccccccccEEEEEEECCChhhhccHHHHHHHHHhhcCCCC-EEEEEeCCCcC
Q 027607           62 IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIP-IVLCGNKVDVK  130 (221)
Q Consensus        62 ~~i~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p-~ivv~nK~D~~  130 (221)
                      +.+.++|+|+...  ......+..+|.+++|.... ..+..............  +.+ +-+|+|+.+..
T Consensus       110 ~D~viiD~~~~~~--~~~~~~l~~ad~v~~v~~~~-~~~~~~~~~~~~~~~~~--~~~~~~iv~N~~~~~  174 (232)
T d1hyqa_         110 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERL--GTKVLGVVVNRITTL  174 (232)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHH--TCEEEEEEEEEECTT
T ss_pred             cceeeeccccccc--chhHHHhhhhheeeeecccc-ccchhhhhhhhhhhhhc--ccccccccccccccc
Confidence            3467788877532  22233455788888888764 33444433333333333  334 44788997643

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=82.60  E-value=3.1  Score=32.41  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=46.8

Q ss_pred             cHHHHHHHHHhhcCCCCEEEEEeCCCcCCccccHHHHHHHhhcCCeEEEecccCCCChHHHHHHHHHHHhCCC
Q 027607          103 NVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDP  175 (221)
Q Consensus       103 ~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gv~~~~~~l~~~l~~~~  175 (221)
                      ++..-++.+..+  +.|++|.+|+.............+++...++.....-+..|.|-.++.+.+.+++...+
T Consensus       356 NL~rHIeNi~~f--GlpvVVAIN~F~tDTd~Ei~~i~~~~~~~g~~~a~~wa~GG~Ga~dLA~~Vv~a~e~~~  426 (549)
T d1eg7a_         356 NLEKHIENIGKF--GVPAVVAINAFPTDTEAELNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLESRP  426 (549)
T ss_dssp             HHHHHHHHHHTT--TCCEEEEEECCTTCCHHHHHHHHHHTTTSEEEEECCTTTGGGGGHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhhhc--CCCeEEEeccCCccchhHHHHHHHHHhhcCcceeeecccCccchHHHHHHHHHHHhccc
Confidence            333334444443  89999999997754444444455677777776544445678888999989888775543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=82.21  E-value=1.7  Score=27.88  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=16.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHh
Q 027607           12 PSFKLVIVGDGGTGKTTFVKRHL   34 (221)
Q Consensus        12 ~~~~i~v~G~~gsGKStL~~~l~   34 (221)
                      |+-||+|+|..++|. |+...+.
T Consensus         2 p~~KI~IIGaG~VG~-~~a~~l~   23 (150)
T d1t2da1           2 PKAKIVLVGSGMIGG-VMATLIV   23 (150)
T ss_dssp             CCCEEEEECCSHHHH-HHHHHHH
T ss_pred             CCCeEEEECCCHHHH-HHHHHHH
Confidence            356999999988995 5555544

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.88  E-value=0.18  Score=34.32  Aligned_cols=16  Identities=25%  Similarity=0.385  Sum_probs=14.0

Q ss_pred             EEEEEcCCCCcHHHHH
Q 027607           15 KLVIVGDGGTGKTTFV   30 (221)
Q Consensus        15 ~i~v~G~~gsGKStL~   30 (221)
                      ++++.+++|+|||+..
T Consensus        42 ~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             CEEEECSSHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHH
Confidence            6899999999999764

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.59  E-value=2.6  Score=26.27  Aligned_cols=36  Identities=0%  Similarity=0.142  Sum_probs=24.3

Q ss_pred             CChhhhccHHHHHHHHHhhcCCCCEEEEEeCCCcCCcc
Q 027607           96 TARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQ  133 (221)
Q Consensus        96 ~~~~s~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~  133 (221)
                      +...-|.++..+...+..  .++++++.+-..|-..+.
T Consensus        80 DEaQFf~dl~~~~~~~~~--~~~~Viv~GLd~Df~~~~  115 (133)
T d1xbta1          80 DEGQFFPDIVEFCEAMAN--AGKTVIVAALDGTFQRKP  115 (133)
T ss_dssp             SSGGGCTTHHHHHHHHHH--TTCEEEEECCSBCTTSSB
T ss_pred             ehhHHHHHHHHHHHHHHh--cCCcEEEEEeccccccCc
Confidence            555566666666655544  388899999888875543