Citrus Sinensis ID: 027632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
Protein Sequence
MAQSCAAALSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Secondary Structure (PSIPRED)
cccccHHHccccHHcccccccccccccccccccccHHHHHHHccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccccEccccccccccccccccccccccccHHHHHHcccHHHccccccEEEEcccccccccccccccccEcccccccccccccccEEEEEcccccccccHHHHHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEEEEc
Coil and Loop (DISEMBL)
MAQSCAAALSSTAIFAAFCnhfpaeshssslrfspLRLRKMIVssnrerkcekfgvkaaytsdysslddcesTWKGIWSIrndlevpsspyiptyaqgeqgggpppmlLGRFQNVLSQLFQHRiircggpvedDMANIIVAQLLYldavdpnkdIIMYlnspggsvtagMAIFDTirhirpdvSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Flexible Loop (DISEMBL)
MAQSCAAALSSTAIFAAFCNHFPAEshssslrfsplRLRKMivssnrerkcekfgvkaaytsdysslddcESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Low Complexity Region (SEG)
MAQSCaaalsstaifaafCNHFPAEshssslrfsplrlrKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Disordered region (IsUnstruct)
*******ALSSTAIFAAFCNHFPA***********LRLRKMIVS****RKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYA**********MLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV*
Disordered Region (DISOPRED)
*********************************************************************************NDLEVPSSPYIPTYAQG*********LLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV*
Disordered Region (DISEMBL)
********LSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Disordered Region (DISPRO)
*********SSTAIFAAFCNH******SSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAQSCAAALSSTAIFAAFCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	221	2.2.26 [Sep-21-2011]
Q9S834	298	ATP-dependent Clp proteas	yes	no	0.909	0.674	0.611	3e-64
Q3MFR5	204	ATP-dependent Clp proteas	yes	no	0.438	0.475	0.670	1e-32
Q3IF46	205	ATP-dependent Clp proteas	yes	no	0.452	0.487	0.63	1e-32
Q24S49	202	ATP-dependent Clp proteas	yes	no	0.434	0.475	0.645	3e-32
Q2JIP1	200	ATP-dependent Clp proteas	yes	no	0.438	0.485	0.639	3e-32
Q88KJ0	213	ATP-dependent Clp proteas	yes	no	0.552	0.572	0.523	6e-32
A5W635	213	ATP-dependent Clp proteas	yes	no	0.552	0.572	0.523	6e-32
Q8YXH5	204	ATP-dependent Clp proteas	yes	no	0.438	0.475	0.649	7e-32
B0KJG6	213	ATP-dependent Clp proteas	yes	no	0.552	0.572	0.515	9e-32
B1J692	213	ATP-dependent Clp proteas	yes	no	0.552	0.572	0.515	1e-31

>sp|Q9S834|CLPP5_ARATH ATP-dependent Clp protease proteolytic subunit 5, chloroplastic OS=Arabidopsis thaliana GN=CLPP5 PE=1 SV=1

 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 129/211 (61%), Positives = 157/211 (74%), Gaps = 10/211 (4%)

Query: 1   MAQSCAAALSSTAIF-AAFCNHFPA----ESHSSSLRFSPLRLRKMIVSSNRERKCEKFG 55
           MA +C +  +S+  F A F +  P     +S   SL F PLR RK     +  +  +   
Sbjct: 1   MAHACVSTSASSLRFTAGFVSASPNGSSFDSPKLSLPFEPLRSRKTNKLVSDRKNWKNST 60

Query: 56  VKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNV 115
            KA Y+ +  + +    + +G+WSIR+DL+VPSSPY P YAQG+   GPPPM+  RFQ++
Sbjct: 61  PKAVYSGNLWTPE--IPSPQGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSI 115

Query: 116 LSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDT 175
           +SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT
Sbjct: 116 ISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDT 175

Query: 176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +RHIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 176 MRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 2

>sp|Q3MFR5|CLPP1_ANAVT ATP-dependent Clp protease proteolytic subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP1 PE=3 SV=1

 Score =  139 bits (351), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/97 (67%), Positives = 80/97 (82%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G  V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18  DIYSRLLRERIIFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++HIRPDV T+C GLAASMGAFLLSAGTKGK +  
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGTKGKRMSL 114

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Anabaena variabilis (strain ATCC 29413 / PCC 7937) (taxid: 240292)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q3IF46|CLPP_PSEHT ATP-dependent Clp protease proteolytic subunit OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=clpP PE=3 SV=1

 Score =  139 bits (350), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 63/100 (63%), Positives = 83/100 (83%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPVED+MAN+I+AQ+L+L++ +P+KDI +Y+NSPGGSVTAGM
Sbjct: 25  RSYDIYSRLLKERIIFLTGPVEDNMANLILAQMLFLESENPDKDIFLYINSPGGSVTAGM 84

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DT+  I+PDVST+CVG AASMGAFLL+AG KGK  C 
Sbjct: 85  AIYDTMNFIKPDVSTICVGQAASMGAFLLTAGAKGKRFCL 124

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudoalteromonas haloplanktis (strain TAC 125) (taxid: 326442)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q24S49|CLPP2_DESHY ATP-dependent Clp protease proteolytic subunit 2 OS=Desulfitobacterium hafniense (strain Y51) GN=clpP2 PE=3 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/96 (64%), Positives = 82/96 (85%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  GGPV DD+AN++VAQ+L+L+A DP KDI +Y+NSPGGS++AGM
Sbjct: 17  RSYDIYSRLLKDRIIFLGGPVTDDVANLVVAQMLFLEAEDPEKDIFLYINSPGGSISAGM 76

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT+++IR DV T+CVGLAASMGAFLL+AG KGK
Sbjct: 77  AIYDTMQYIRADVHTICVGLAASMGAFLLTAGAKGK 112

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Desulfitobacterium hafniense (strain Y51) (taxid: 138119)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q2JIP1|CLPP2_SYNJB ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=clpP2 PE=3 SV=1

 Score =  138 bits (347), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 82/97 (84%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RII  G  V+DD+AN+IVAQ+LYL++ DP KDI +Y+NSPGGSV AGMAI+
Sbjct: 17  DIYSRLLRDRIIFLGTQVDDDIANLIVAQMLYLESEDPEKDIYLYINSPGGSVYAGMAIY 76

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++HI+PDVST+C+GLAASMGAFLL+ GTKGK +  
Sbjct: 77  DTMQHIQPDVSTICIGLAASMGAFLLAGGTKGKRIAL 113

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Synechococcus sp. (strain JA-2-3B'a(2-13)) (taxid: 321332)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q88KJ0|CLPP_PSEPK ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain KT2440) GN=clpP PE=3 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 93/128 (72%), Gaps = 6/128 (4%)

Query: 89  SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
           + YI   +  +  GG  PM++       R  ++ S+L + R+I   GPVED MAN++VAQ
Sbjct: 4   NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63

Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
           LL+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64  LLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123

Query: 203 TKGKYLCF 210
            KGK  C 
Sbjct: 124 AKGKRHCL 131

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudomonas putida (strain KT2440) (taxid: 160488)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A5W635|CLPP_PSEP1 ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=clpP PE=3 SV=1

 Score =  137 bits (345), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 93/128 (72%), Gaps = 6/128 (4%)

Query: 89  SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
           + YI   +  +  GG  PM++       R  ++ S+L + R+I   GPVED MAN++VAQ
Sbjct: 4   NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63

Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
           LL+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64  LLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123

Query: 203 TKGKYLCF 210
            KGK  C 
Sbjct: 124 AKGKRHCL 131

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudomonas putida (strain F1 / ATCC 700007) (taxid: 351746)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q8YXH5|CLPP1_NOSS1 ATP-dependent Clp protease proteolytic subunit 1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=clpP1 PE=3 SV=1

 Score =  137 bits (344), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/97 (64%), Positives = 79/97 (81%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + RI+  G  V+ ++AN+IVAQLL+LDA DP KDI +Y+NSPGGSVTAGM IF
Sbjct: 18  DIYSRLLRERIVFLGQQVDSNLANLIVAQLLFLDAEDPEKDIYLYINSPGGSVTAGMGIF 77

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++HIRPDV T+C GLAASMGAFLLSAG KGK +  
Sbjct: 78  DTMKHIRPDVCTICTGLAASMGAFLLSAGAKGKRMSL 114

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B0KJG6|CLPP_PSEPG ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain GB-1) GN=clpP PE=3 SV=1

 Score =  136 bits (343), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 93/128 (72%), Gaps = 6/128 (4%)

Query: 89  SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
           + YI   +  +  GG  PM++       R  ++ S+L + R+I   GPVED MAN++VAQ
Sbjct: 4   NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63

Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
           +L+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64  MLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLTAG 123

Query: 203 TKGKYLCF 210
            KGK  C 
Sbjct: 124 AKGKRHCL 131

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudomonas putida (strain GB-1) (taxid: 76869)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B1J692|CLPP_PSEPW ATP-dependent Clp protease proteolytic subunit OS=Pseudomonas putida (strain W619) GN=clpP PE=3 SV=1

 Score =  136 bits (343), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 66/128 (51%), Positives = 93/128 (72%), Gaps = 6/128 (4%)

Query: 89  SPYIPTYAQGEQGGGPPPMLLG------RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQ 142
           + YI   +  +  GG  PM++       R  ++ S+L + R+I   GPVED MAN++VAQ
Sbjct: 4   NSYIQQSSDIQAAGGLVPMVIEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLVVAQ 63

Query: 143 LLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG 202
           +L+L+A +P+KDI +Y+NSPGGSVTAGM+I+DT++ I+PDVST+C+G A SMGAFLL+AG
Sbjct: 64  MLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPDVSTICIGQACSMGAFLLAAG 123

Query: 203 TKGKYLCF 210
            KGK  C 
Sbjct: 124 AKGKRHCL 131

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Pseudomonas putida (strain W619) (taxid: 390235)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
76262827	306	ATP-dependent Clp protease proteolytic s	0.796	0.575	0.708	1e-67
255548433	305	ATP-dependent Clp protease proteolytic s	0.814	0.590	0.688	4e-66
449469024	306	PREDICTED: ATP-dependent Clp protease pr	0.773	0.558	0.704	3e-65
449484212	306	PREDICTED: ATP-dependent Clp protease pr	0.773	0.558	0.704	4e-65
224068558	300	predicted protein [Populus trichocarpa]	0.791	0.583	0.683	4e-64
357511379	301	ATP-dependent Clp protease proteolytic s	0.819	0.601	0.666	1e-63
15485610	299	Clp protease 2 proteolytic subunit [Sola	0.891	0.658	0.632	2e-63
225437581	289	PREDICTED: ATP-dependent Clp protease pr	0.764	0.584	0.698	5e-63
363806660	304	uncharacterized protein LOC100798621 [Gl	0.742	0.539	0.723	7e-63
359480168	215	PREDICTED: ATP-dependent Clp protease pr	0.764	0.786	0.698	1e-62

>gi|76262827|gb|ABA41488.1| ATP-dependent Clp protease proteolytic subunit [Carica papaya]

 Score =  261 bits (668), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 129/182 (70%), Positives = 148/182 (81%), Gaps = 6/182 (3%)

Query: 25  ESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDL 84
           ES S  L   PLR RK+    + ++K      KA YTS+   L   ES+ +GIWSIR+DL
Sbjct: 30  ESQSLCLPLEPLRSRKLKKLVSNQKKVRNSTAKAVYTSN---LRMPESSHQGIWSIRDDL 86

Query: 85  EVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLL 144
           ++PSSPY P YAQG+   GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLL
Sbjct: 87  QIPSSPYFPAYAQGQ---GPPPMVQERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLL 143

Query: 145 YLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
           YLDAVDPNKDI+MY+NSPGGSVTAGMA+FDT+RHIRPDVSTVCVGLAASMGAFLLSAGTK
Sbjct: 144 YLDAVDPNKDIVMYVNSPGGSVTAGMAVFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTK 203

Query: 205 GK 206
           GK
Sbjct: 204 GK 205

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548433|ref|XP_002515273.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223545753|gb|EEF47257.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 149/183 (81%), Gaps = 3/183 (1%)

Query: 25  ESHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDL 84
           +SH  SL F PLR RK    S+  +  +    KA Y+  + + +  +++ +GIWSIR+DL
Sbjct: 29  DSHKLSLPFEPLRSRKFRKLSSIRKNSQPSSAKAVYSGQFWAPE--KTSRQGIWSIRDDL 86

Query: 85  EVPSSPYIPTYAQGE-QGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQL 143
           E+PSSPY P YA G+ Q  GPPPM+  RFQ+V+SQLFQ+RIIRCGG V+DDMANIIVAQL
Sbjct: 87  EIPSSPYFPAYANGQGQAQGPPPMVHERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQL 146

Query: 144 LYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT 203
           LYLDAVDPNKDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGT
Sbjct: 147 LYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGT 206

Query: 204 KGK 206
           KGK
Sbjct: 207 KGK 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469024|ref|XP_004152221.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like [Cucumis sativus]

 Score =  253 bits (647), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 5/176 (2%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L   P   RK+       R  + + VKA Y+ ++SS+D   ++ +GIWSIR+D++VPSS 
Sbjct: 35  LPLEPFHSRKLGKLVGGGRNLKNYPVKAMYSGEFSSMDG--NSRQGIWSIRDDVQVPSSL 92

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPVEDDMANIIVAQLLYLDAVD
Sbjct: 93  YFPTYAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVD 149

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           PNKDI+MY+NSPGGSVTAGMAIFDT++HIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 150 PNKDIVMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGTKGK 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484212|ref|XP_004156818.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic-like [Cucumis sativus]

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 124/176 (70%), Positives = 146/176 (82%), Gaps = 5/176 (2%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L   P   RK+       R  + + VKA Y+ ++SS+D   ++ +GIWSIR+D++VPSS 
Sbjct: 35  LPLEPFHSRKLGKLVGGGRNLKNYPVKAMYSGEFSSMD--VNSRQGIWSIRDDVQVPSSL 92

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPVEDDMANIIVAQLLYLDAVD
Sbjct: 93  YFPTYAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVEDDMANIIVAQLLYLDAVD 149

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           PNKDI+MY+NSPGGSVTAGMAIFDT++HIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 150 PNKDIVMYVNSPGGSVTAGMAIFDTMKHIRPDVSTVCVGLAASMGAFLLSAGTKGK 205

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068558|ref|XP_002302770.1| predicted protein [Populus trichocarpa] gi|222844496|gb|EEE82043.1| predicted protein [Populus trichocarpa]

 Score =  249 bits (637), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 121/177 (68%), Positives = 142/177 (80%), Gaps = 2/177 (1%)

Query: 30  SLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSS 89
           S  F  LR  K+    +  +  +   VKA Y+ ++ + +   S  +GIWS+R DL++PSS
Sbjct: 30  SFPFHHLRYSKLRELGSDRKAIQTSSVKAVYSGEFWAPE--RSLRQGIWSMREDLQIPSS 87

Query: 90  PYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAV 149
           P+ P YA G QG GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLLYLDAV
Sbjct: 88  PFFPAYANGAQGQGPPPMVHERFQSVISQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAV 147

Query: 150 DPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DPNKDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 148 DPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 204

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511379|ref|XP_003625978.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula] gi|355500993|gb|AES82196.1| ATP-dependent Clp protease proteolytic subunit [Medicago truncatula]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/186 (66%), Positives = 146/186 (78%), Gaps = 5/186 (2%)

Query: 23  PAESHSSSLRF-SPL-RLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSI 80
           P  SHS +L F SP  R    +  S    +      KA Y +D+ + +  ++   GIWSI
Sbjct: 18  PTSSHSHTLSFASPSSRFSSNLGGSRNVTQKSYLKAKAVYVNDFLASEAEKNLIHGIWSI 77

Query: 81  RNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIV 140
           R DL+VPSSPY P +AQG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGGPV+DDMANIIV
Sbjct: 78  REDLQVPSSPYFPVHAQGQ---GPPPMVQERFQSVISQLFQYRIIRCGGPVDDDMANIIV 134

Query: 141 AQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS 200
           +QLLYLDAVDP+KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLS
Sbjct: 135 SQLLYLDAVDPSKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLS 194

Query: 201 AGTKGK 206
           AGTKGK
Sbjct: 195 AGTKGK 200

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15485610|emb|CAC67407.1| Clp protease 2 proteolytic subunit [Solanum lycopersicum]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 134/212 (63%), Positives = 157/212 (74%), Gaps = 15/212 (7%)

Query: 1   MAQSCAAALSS-----TAIFAA-FCNHFPAESHSSSLRFSPLRLRKMIVSSNRERKCEKF 54
           MA SC A  SS     +AIF + +CN  P      SL+F  L LRK + +  + +     
Sbjct: 1   MAHSCIATTSSLSKYNSAIFPSDYCNISPI-----SLQFKRLSLRK-VKAVGKVKSRGNS 54

Query: 55  GVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQN 114
            VKA Y+     L    S   GIWSIR+D+++PSSPY PTYA   QG GPPPM+  RFQ+
Sbjct: 55  TVKAVYSGGDWDLAKA-SRSSGIWSIRDDVQIPSSPYFPTYA--AQGQGPPPMVQERFQS 111

Query: 115 VLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD 174
           V+SQLFQ+RIIRCGG V+DDMAN+IVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMA+FD
Sbjct: 112 VISQLFQYRIIRCGGAVDDDMANVIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAVFD 171

Query: 175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           T+RHIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 172 TMRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 203

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437581|ref|XP_002277104.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic isoform 1 [Vitis vinifera] gi|297743987|emb|CBI36957.3| unnamed protein product [Vitis vinifera]

 Score =  246 bits (628), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 145/176 (82%), Gaps = 7/176 (3%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L FS  +  K++ S  R R      VKAAY+ ++ + D  +++ +G WSIR+DL++PSS 
Sbjct: 26  LSFSSRKFTKLVGSEKRLRVAP---VKAAYSGEFWAPD--KNSRQGTWSIRDDLQIPSSA 80

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG  G GPPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLLYLDAVD
Sbjct: 81  YFPTYAQG--GQGPPPMVQERFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVD 138

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           P+KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLS GTKGK
Sbjct: 139 PDKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGK 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806660|ref|NP_001242516.1| uncharacterized protein LOC100798621 [Glycine max] gi|255645951|gb|ACU23464.1| unknown [Glycine max]

 Score =  246 bits (627), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 123/170 (72%), Positives = 143/170 (84%), Gaps = 6/170 (3%)

Query: 38  LRKMIVSSNRERKC-EKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYA 96
           L + +  S  +RK  +K  VKA Y  ++ + +   S+  GIWSIR+DL+VPSSPY PTYA
Sbjct: 39  LSRNLRKSVEDRKINKKSAVKAVYGDEFWTPE--RSSRPGIWSIRSDLQVPSSPYFPTYA 96

Query: 97  QGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDII 156
           QG+   GPPPM+  RFQ+V+SQLFQ+RIIRCGG V+DDMANIIVAQLLYLDAVDPNKDI+
Sbjct: 97  QGQ---GPPPMVAERFQSVISQLFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPNKDIV 153

Query: 157 MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLSAGTKGK
Sbjct: 154 MYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 203

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480168|ref|XP_003632410.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit 5, chloroplastic isoform 2 [Vitis vinifera]

 Score =  244 bits (624), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/176 (69%), Positives = 145/176 (82%), Gaps = 7/176 (3%)

Query: 31  LRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSP 90
           L FS  +  K++ S  R R      VKAAY+ ++ + D  +++ +G WSIR+DL++PSS 
Sbjct: 26  LSFSSRKFTKLVGSEKRLRVAP---VKAAYSGEFWAPD--KNSRQGTWSIRDDLQIPSSA 80

Query: 91  YIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVD 150
           Y PTYAQG QG  PPPM+  RFQ+V+SQLFQHRIIRCGG V+DDMANIIVAQLLYLDAVD
Sbjct: 81  YFPTYAQGGQG--PPPMVQERFQSVVSQLFQHRIIRCGGAVDDDMANIIVAQLLYLDAVD 138

Query: 151 PNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           P+KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASMGAFLLS GTKGK
Sbjct: 139 PDKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMGAFLLSCGTKGK 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	221
TAIR|locus:2196120	298	CLPP5 "nuclear encoded CLP pro	0.583	0.432	0.825	4.2e-56
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.434	0.492	0.593	5.6e-29
TIGR_CMR|CPS_3785	220	CPS_3785 "ATP-dependent Clp pr	0.447	0.45	0.606	9.1e-29
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.434	0.463	0.604	2.4e-28
UNIPROTKB|P63786	195	clpP "ATP-dependent Clp protea	0.434	0.492	0.604	3.1e-28
TIGR_CMR|SO_1794	202	SO_1794 "ATP-dependent Clp pro	0.434	0.475	0.625	3.1e-28
TIGR_CMR|BA_5380	193	BA_5380 "ATP-dependent Clp pro	0.434	0.497	0.593	8.2e-28
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.434	0.482	0.593	2.8e-27
TIGR_CMR|VC_1922	200	VC_1922 "ATP-dependent Clp pro	0.434	0.48	0.583	1.2e-26
TIGR_CMR|APH_0970	197	APH_0970 "ATP-dependent Clp pr	0.429	0.482	0.568	8.4e-26

TAIR|locus:2196120 CLPP5 "nuclear encoded CLP protease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 109/132 (82%), Positives = 123/132 (93%)

Query:    75 KGIWSIRNDLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD 134
             +G+WSIR+DL+VPSSPY P YAQG+   GPPPM+  RFQ+++SQLFQ+RIIRCGG V+DD
Sbjct:    78 QGVWSIRDDLQVPSSPYFPAYAQGQ---GPPPMVQERFQSIISQLFQYRIIRCGGAVDDD 134

Query:   135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASM 194
             MANIIVAQLLYLDAVDP KDI+MY+NSPGGSVTAGMAIFDT+RHIRPDVSTVCVGLAASM
Sbjct:   135 MANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 194

Query:   195 GAFLLSAGTKGK 206
             GAFLLSAGTKGK
Sbjct:   195 GAFLLSAGTKGK 206

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 57/96 (59%), Positives = 81/96 (84%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R I  GGP++D +AN+++AQ+L+L+A DP KDI +Y+NSPGG +TAGM
Sbjct:    17 RSYDIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPGGVITAGM 76

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             AI+DT+++I+PDVST+C+G AASMGAFLL+AG KGK
Sbjct:    77 AIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGK 112

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|CPS_3785 CPS_3785 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 60/99 (60%), Positives = 80/99 (80%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R+I   G VED MAN+I+AQLL+L++  P+KDI +Y+NSPGGSVTAGM
Sbjct:    40 RSYDIYSRLLKERVIFLCGQVEDHMANLIIAQLLFLESESPDKDIYLYINSPGGSVTAGM 99

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
             AI+DT++ I+P++STVC+G AASMGAFLLS G KGK  C
Sbjct:   100 AIYDTMKFIKPNISTVCIGQAASMGAFLLSGGEKGKRYC 138

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 58/96 (60%), Positives = 79/96 (82%)

Query:   114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
             ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct:    32 DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 91

Query:   174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
             DT++ I+PDVST+C+G AASMGAFLL+AG KGK  C
Sbjct:    92 DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFC 127

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

UNIPROTKB|P63786 clpP "ATP-dependent Clp protease proteolytic subunit" [Staphylococcus aureus subsp. aureus MW2 (taxid:196620)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 58/96 (60%), Positives = 78/96 (81%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct:    16 RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGK
Sbjct:    76 AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGK 111

GO:0042802 "identical protein binding" evidence=IPI

TIGR_CMR|SO_1794 SO_1794 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query:   114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
             ++ S+L + RII   G VE+ MAN+IVAQLL+L++  P+KDI +Y+NSPGGSVTAGMAI+
Sbjct:    27 DIYSRLLKERIIFLVGQVEEHMANLIVAQLLFLESESPDKDIFLYINSPGGSVTAGMAIY 86

Query:   174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
             DT++ I+P+VSTVC+G AASMGAFLL+ G KGK  C
Sbjct:    87 DTMQFIKPNVSTVCIGQAASMGAFLLAGGEKGKRFC 122

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|BA_5380 BA_5380 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 57/96 (59%), Positives = 80/96 (83%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  G  ++D++AN IV+QLL+L++ DP KDI +Y+NSPGGS+TAGM
Sbjct:    16 RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLESQDPEKDIHIYINSPGGSITAGM 75

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGK
Sbjct:    76 AIYDTMQFIKPQVSTICIGMAASMGAFLLAAGEKGK 111

GO:0006508 "proteolysis" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 57/96 (59%), Positives = 79/96 (82%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII  GGPV+D +AN+++AQ+L+L+A DP+KDI +Y+NSPGG VT+GM
Sbjct:    15 RSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIHLYINSPGGVVTSGM 74

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             AI+DT+++I+  VST+CVG AASMGA LLS G KGK
Sbjct:    75 AIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGK 110

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|VC_1922 VC_1922 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 56/96 (58%), Positives = 78/96 (81%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + R+I   G VED MAN++VAQLL+L++ +P+KDI +Y+NSPGGSVTAGM
Sbjct:    21 RSYDIYSRLLKERVIFLTGQVEDHMANLVVAQLLFLESENPDKDIFLYINSPGGSVTAGM 80

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             +I+DT++ I+P+VSTVC+G A SMGAFLL+ G  GK
Sbjct:    81 SIYDTMQFIKPNVSTVCMGQACSMGAFLLAGGAPGK 116

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|APH_0970 APH_0970 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 54/95 (56%), Positives = 78/95 (82%)

Query:   111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             R  ++ S+L + RII   GP+ED+MA++IVAQL++L+A DP KDI MY+NSPGG VTAG+
Sbjct:    16 RAYDIYSRLLKERIIFVTGPIEDEMASLIVAQLVFLEAEDPEKDISMYINSPGGVVTAGL 75

Query:   171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
             +I+DT+++I+P+V+T+C+G AASMG+ LL AG  G
Sbjct:    76 SIYDTMQYIKPNVATLCLGQAASMGSLLLCAGAPG 110

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S834	CLPP5_ARATH	3, ., 4, ., 2, 1, ., 9, 2	0.6113	0.9095	0.6744	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.921
3rd Layer	3.4.21.92	0.914

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_II0893	hypothetical protein (301 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.374.1	hypothetical protein (403 aa)	•		•				•		0.724
	gw1.XII.172.1	hypothetical protein (427 aa)	•		•				•		0.698
	gw1.86.193.1	hypothetical protein (521 aa)	•		•				•		0.600

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	221
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	2e-58
pfam00574	182	pfam00574, CLP_protease, Clp protease	8e-53
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	4e-52
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	4e-48
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	2e-47
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	3e-46
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	5e-44
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	4e-41
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	2e-36
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	6e-36
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	1e-34
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	2e-24
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	1e-23
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	2e-20
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	4e-15
cd07023	208	cd07023, S49_Sppa_N_C, Signal peptide peptidase A	1e-04
COG0616	317	COG0616, SppA, Periplasmic serine proteases (ClpP	5e-04

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  182 bits (465), Expect = 2e-58
 Identities = 64/99 (64%), Positives = 82/99 (82%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  GG VED MAN+IVAQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 20  RSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 79

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
           AI+DT++ I+PDVST+C+G AASMGAFLL+AG KGK   
Sbjct: 80  AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFA 118

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  167 bits (426), Expect = 8e-53
 Identities = 60/100 (60%), Positives = 86/100 (86%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R+ ++ S+L + RII  GG ++D++AN+I+AQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 5   RWYDIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 64

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DT++ I+PDVST+C+GLAASMG+F+L+AGTKGK    
Sbjct: 65  AIYDTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFAL 104

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  165 bits (421), Expect = 4e-52
 Identities = 59/90 (65%), Positives = 80/90 (88%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII  GGP++D++AN+I+AQLLYL++ DP K I +Y+NSPGGSVTAG+AI+DT+
Sbjct: 4   SRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTM 63

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           ++I+P VST+C+GLAASMGA LL+AGTKGK
Sbjct: 64  QYIKPPVSTICLGLAASMGALLLAAGTKGK 93

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  156 bits (395), Expect = 4e-48
 Identities = 60/99 (60%), Positives = 79/99 (79%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   G V D++AN IVAQLL+L+A DP KDI +Y+NSPGGS+TAG+
Sbjct: 16  RSFDIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPGGSITAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
           AI+DT++ I+PDVST+C+G AASMGAFLL+AG KGK   
Sbjct: 76  AIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFS 114

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  154 bits (392), Expect = 2e-47
 Identities = 60/96 (62%), Positives = 79/96 (82%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  GG +ED MAN+IVAQLL+L+A DP+KDI +Y+NSPGGSVTAG+
Sbjct: 16  RSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT++ I+P VST+C+G AASMG+ LL AG KGK
Sbjct: 76  AIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGK 111

Length = 200

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  152 bits (385), Expect = 3e-46
 Identities = 57/100 (57%), Positives = 75/100 (75%)

Query: 110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG 169
            +  +  ++LF+ RII  GG V+D  AN ++AQLL L+++DP++DI +Y+NSPGGSVTAG
Sbjct: 23  VKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAG 82

Query: 170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLC 209
            AI+DTI+ IRPDV TVC G AAS GA LL+AGT GK   
Sbjct: 83  DAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFA 122

Length = 207

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  145 bits (368), Expect = 5e-44
 Identities = 62/96 (64%), Positives = 75/96 (78%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G PV  D AN IVAQLL+L+A DP KDI +Y+NSPGGSV  G+
Sbjct: 14  RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGL 73

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
            IFDT++H++PDV TVCVGLAASMGAFLL AG KGK
Sbjct: 74  GIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGK 109

Length = 196

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  138 bits (350), Expect = 4e-41
 Identities = 41/97 (42%), Positives = 72/97 (74%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ ++L++ R++  G  V+D++AN ++  ++YL   D  KD+ +++NSPGGSV +G+AI+
Sbjct: 22  DLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPGGSVISGLAIY 81

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++ ++PDV T+C+GLAASM +F+L+ G   K L F
Sbjct: 82  DTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAF 118

Length = 200

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  125 bits (314), Expect = 2e-36
 Identities = 50/87 (57%), Positives = 60/87 (68%)

Query: 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPD 182
           R I   G VED  AN   AQLL+L AV+P KDI +Y+NSPGG V AGMAI+DTI+ I+ D
Sbjct: 1   REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKAD 60

Query: 183 VSTVCVGLAASMGAFLLSAGTKGKYLC 209
           V T+  GLAASMG+ +  AG KGK   
Sbjct: 61  VVTIIDGLAASMGSVIAMAGAKGKRFI 87

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  125 bits (316), Expect = 6e-36
 Identities = 55/93 (59%), Positives = 70/93 (75%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V S+L   RII  G  ++D  AN I AQLLYLD+VDP KDI +Y+NSPGGSV AG+ I+
Sbjct: 46  DVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIY 105

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DT++ I  DV+T+C G+AASM + LL AGTKGK
Sbjct: 106 DTMQFISSDVATICTGMAASMASVLLVAGTKGK 138

Length = 221

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  121 bits (306), Expect = 1e-34
 Identities = 54/98 (55%), Positives = 73/98 (74%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G P+E  MAN IVAQLL LD+ +P ++I MY+N PGG V AG+
Sbjct: 16  RMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGL 75

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYL 208
           AI+DT+R+I+  VST+CVG+A SMG+ LL AG KGK +
Sbjct: 76  AIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRM 113

Length = 201

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 94.0 bits (234), Expect = 2e-24
 Identities = 29/81 (35%), Positives = 46/81 (56%)

Query: 124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDV 183
           +I   G +ED  A+ + AQ+ + +A +  K I++ +N+PGG V AGM I D ++  R  V
Sbjct: 1   VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPV 60

Query: 184 STVCVGLAASMGAFLLSAGTK 204
                G AAS G ++ +A  K
Sbjct: 61  IAYVGGQAASAGYYIATAANK 81

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score = 93.6 bits (233), Expect = 1e-23
 Identities = 49/121 (40%), Positives = 62/121 (51%), Gaps = 26/121 (21%)

Query: 104 PPPMLLGRFQNVLSQLFQHRIIRCGGP----------VEDDMANIIVAQLLYLDAVDPNK 153
           PPP L        S L + RI+  G P          V  D+  +I+AQLLYL+  DP K
Sbjct: 19  PPPDLP-------SLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEK 71

Query: 154 DIIMYLNSPGGSV---------TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
            I  Y+NS G S          T   AI DT+R+I+P V T+C+G A    A +LSAGTK
Sbjct: 72  PIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTK 131

Query: 205 G 205
           G
Sbjct: 132 G 132

Length = 222

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 84.5 bits (209), Expect = 2e-20
 Identities = 33/92 (35%), Positives = 52/92 (56%)

Query: 113 QNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI 172
              L +  + R I   G +  D++ +   ++L L+A+D  K I +Y++S GG + AG AI
Sbjct: 14  DKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAI 73

Query: 173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
           F+ IR ++P V T+ VGL AS  A +  A  K
Sbjct: 74  FNMIRFVKPKVFTIGVGLVASAAALIFLAAKK 105

Length = 197

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 69.5 bits (171), Expect = 4e-15
 Identities = 23/59 (38%), Positives = 37/59 (62%)

Query: 146 LDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTK 204
           LDA+  + DI + +NSPGG V AG+AI++ ++  +  V+    GLAAS  + +  AG +
Sbjct: 24  LDALGDDSDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDE 82

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

>gnl|CDD|132934 cd07023, S49_Sppa_N_C, Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 150 DPN-KDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLSAGT 203
           D + K +++ +NSPGGSV A   I+  IR +R     V      +AAS G + ++A  
Sbjct: 32  DDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAAS-GGYYIAAAA 88

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. Interestingly, the single membrane spanning E. coli SppA carries out catalysis using a Ser-Lys dyad with the serine located in the conserved carboxy-terminal protease domain and the lysine in the non-conserved amino-terminal domain. Length = 208

>gnl|CDD|223689 COG0616, SppA, Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 148 AVDPN-KDIIMYLNSPGGSVTAGMAIFDTIRHIR-PDVSTVCVG-LAASMGAFLLSAG 202
             DP+ K +++ +NSPGGSV A   I   ++ +R      V VG  AAS G + ++  
Sbjct: 93  RADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAAS-GGYYIALA 149

Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	221
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	99.98
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	99.97
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	99.97
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	99.95
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.85
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.78
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.77
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.75
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.61
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	99.45
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.33
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.31
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	99.2
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	99.17
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	99.1
PRK11778	330	putative inner membrane peptidase; Provisional	99.04
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	99.04
PRK10949	618	protease 4; Provisional	99.02
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.86
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.8
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	98.38
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	97.62
PRK10949	618	protease 4; Provisional	97.49
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	97.45
COG3904	245	Predicted periplasmic protein [Function unknown]	97.23
PRK06688	259	enoyl-CoA hydratase; Provisional	96.96
PRK07511	260	enoyl-CoA hydratase; Provisional	96.87
PRK06072	248	enoyl-CoA hydratase; Provisional	96.76
PRK08258	277	enoyl-CoA hydratase; Provisional	96.76
PRK06210	272	enoyl-CoA hydratase; Provisional	96.65
PRK05869	222	enoyl-CoA hydratase; Validated	96.63
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	96.53
PRK05981	266	enoyl-CoA hydratase; Provisional	96.53
PRK06495	257	enoyl-CoA hydratase; Provisional	96.53
PRK07468	262	enoyl-CoA hydratase; Provisional	96.5
PRK06023	251	enoyl-CoA hydratase; Provisional	96.5
PRK07509	262	enoyl-CoA hydratase; Provisional	96.49
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	96.46
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.46
PLN02600	251	enoyl-CoA hydratase	96.43
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	96.41
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	96.4
PRK08260	296	enoyl-CoA hydratase; Provisional	96.4
PRK06143	256	enoyl-CoA hydratase; Provisional	96.39
PRK05864	276	enoyl-CoA hydratase; Provisional	96.38
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	96.36
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	96.36
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	96.35
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	96.32
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	96.32
PRK06190	258	enoyl-CoA hydratase; Provisional	96.31
PRK09076	258	enoyl-CoA hydratase; Provisional	96.31
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	96.3
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	96.23
PRK08138	261	enoyl-CoA hydratase; Provisional	96.22
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	96.21
PRK07854	243	enoyl-CoA hydratase; Provisional	96.2
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	96.19
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	96.18
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	96.17
PRK08140	262	enoyl-CoA hydratase; Provisional	96.12
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	96.11
PRK06142	272	enoyl-CoA hydratase; Provisional	96.11
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	96.08
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	96.08
PRK05980	260	enoyl-CoA hydratase; Provisional	96.08
PRK08150	255	enoyl-CoA hydratase; Provisional	96.06
PRK06127	269	enoyl-CoA hydratase; Provisional	96.04
PLN02888	265	enoyl-CoA hydratase	96.02
PRK07327	268	enoyl-CoA hydratase; Provisional	96.02
PRK05870	249	enoyl-CoA hydratase; Provisional	96.02
PRK07260	255	enoyl-CoA hydratase; Provisional	96.01
PLN02921	327	naphthoate synthase	95.95
PRK09245	266	enoyl-CoA hydratase; Provisional	95.92
PRK07658	257	enoyl-CoA hydratase; Provisional	95.85
PRK07657	260	enoyl-CoA hydratase; Provisional	95.83
PRK07938	249	enoyl-CoA hydratase; Provisional	95.82
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	95.76
PRK08272	302	enoyl-CoA hydratase; Provisional	95.72
PRK05995	262	enoyl-CoA hydratase; Provisional	95.68
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	95.66
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	95.64
PRK06494	259	enoyl-CoA hydratase; Provisional	95.64
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	95.62
PRK08139	266	enoyl-CoA hydratase; Validated	95.59
PRK06144	262	enoyl-CoA hydratase; Provisional	95.59
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	95.53
PRK08290	288	enoyl-CoA hydratase; Provisional	95.51
PRK06563	255	enoyl-CoA hydratase; Provisional	95.51
PRK12478	298	enoyl-CoA hydratase; Provisional	95.5
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	95.49
PRK08321	302	naphthoate synthase; Validated	95.48
PRK05862	257	enoyl-CoA hydratase; Provisional	95.46
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	95.46
PLN02267	239	enoyl-CoA hydratase/isomerase family protein	95.45
PRK07827	260	enoyl-CoA hydratase; Provisional	95.28
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	95.27
PRK06213	229	enoyl-CoA hydratase; Provisional	95.25
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	95.2
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	95.11
PRK08788	287	enoyl-CoA hydratase; Validated	95.08
PRK08252	254	enoyl-CoA hydratase; Provisional	94.94
PRK07659	260	enoyl-CoA hydratase; Provisional	94.62
PRK07799	263	enoyl-CoA hydratase; Provisional	94.58
PRK08259	254	enoyl-CoA hydratase; Provisional	94.52
PLN02874	379	3-hydroxyisobutyryl-CoA hydrolase-like protein	94.33
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	94.21
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	94.1
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.07
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	93.55
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	93.31
PRK08184	550	benzoyl-CoA-dihydrodiol lyase; Provisional	93.1
PRK11730	715	fadB multifunctional fatty acid oxidation complex	93.05
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	93.05
KOG1680	290	consensus Enoyl-CoA hydratase [Lipid transport and	92.21
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.59
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	91.58
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	90.2
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	90.09
PRK05654	292	acetyl-CoA carboxylase subunit beta; Validated	87.95
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	87.7
TIGR03222	546	benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the p	83.99
PF06833	234	MdcE: Malonate decarboxylase gamma subunit (MdcE);	83.67
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	81.97

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.5e-48  Score=343.64  Aligned_cols=176  Identities=41%  Similarity=0.644  Sum_probs=159.7

Q ss_pred             ccccccccchhhhhhhhhcccccccccccceeeeecCCCccccCCCCcCccceeeccCCCCCCCCcccccccCCCCCCCC
Q 027632           26 SHSSSLRFSPLRLRKMIVSSNRERKCEKFGVKAAYTSDYSSLDDCESTWKGIWSIRNDLEVPSSPYIPTYAQGEQGGGPP  105 (221)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  105 (221)
                      +.++...+.|.+.++|.+....+|..++++-++++++.-|++.        .|+++.+.++|..++.   ..+   +|  
T Consensus        15 ~~~~~~~l~P~~~~~~~~~~~~~r~~~~~~~~s~~sg~~~~~~--------~~~~~~~~~~p~~~~~---~~~---rG--   78 (275)
T KOG0840|consen   15 SPKRFSGLNPASTSNFPKQRNVRRQLKSSTPKSLRSGGSSNSR--------GWSLRAPILVPRFPIE---SPG---RG--   78 (275)
T ss_pred             ccchhcccCchhhhhccccccchhhhhccCcccccccCCCCCC--------cccccccccCCcceee---ccc---cC--
Confidence            6667778888888999988888899988888999999888733        7999999999944333   333   33  


Q ss_pred             CccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEE
Q 027632          106 PMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVST  185 (221)
Q Consensus       106 p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~T  185 (221)
                         .|+|+||+++||++|||||+++|||++++.|++||+||+++|++|||+||||||||++++|++|||+|+++++||.|
T Consensus        79 ---~~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPGG~vtaglAIYDtMq~ik~~V~T  155 (275)
T KOG0840|consen   79 ---RERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPDVST  155 (275)
T ss_pred             ---CCCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCCCccchhhhHHHHHHhhCCCcee
Confidence               47889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          186 VCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       186 v~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|.|+|||||++||+||+||+|+++||+.+|||-.
T Consensus       156 ic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP  190 (275)
T KOG0840|consen  156 ICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQP  190 (275)
T ss_pred             eehhhHHhHHHHHHhcCCCcceeecCCceeEEecc
Confidence            99999999999999999999999999999999964

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=3.3e-39  Score=278.63  Aligned_cols=111  Identities=54%  Similarity=0.868  Sum_probs=108.1

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |+.+|++++|+++|+|||+|+|++.+++.+++||++|+++++.|+|+||||||||+|++|++|||+||++++||+|+|.|
T Consensus        15 ~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G   94 (200)
T COG0740          15 ERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPGGSVTAGLAIYDTMQFIKPPVSTICMG   94 (200)
T ss_pred             CChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCCcccchhHHHHHHHHhcCCCeEEEEec
Confidence            44579999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|++||++|||+++|||.+|||..
T Consensus        95 ~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP  125 (200)
T COG0740          95 QAASMGSVLLMAGDKGKRFALPNARIMIHQP  125 (200)
T ss_pred             HHHhHHHHHHhcCCCCCceeCCCceEEEecC
Confidence            9999999999999999999999999999975

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=1.2e-38  Score=274.08  Aligned_cols=127  Identities=35%  Similarity=0.682  Sum_probs=116.2

Q ss_pred             CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCC
Q 027632           83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP  162 (221)
Q Consensus        83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP  162 (221)
                      ++++|..++.++...           ..+|.|++++||++|||||+++||+++++++++||++|+.+++.++|+||||||
T Consensus         2 ~~~~p~~~~~~~~~~-----------~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSp   70 (200)
T CHL00028          2 PIGVPKVPFRLPGEE-----------DATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSP   70 (200)
T ss_pred             CCCCceeeeecCCCC-----------CcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCC
Confidence            467777765422111           146889999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          163 GGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       163 GGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||+|++|++|||+|+.++.+|+|+|.|+|||||++||++|+||+|+++|||++|||..
T Consensus        71 GG~v~~g~aIyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp  128 (200)
T CHL00028         71 GGSVISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQP  128 (200)
T ss_pred             CcchhhHHHHHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecC
Confidence            9999999999999999999999999999999999999999999999999999999974

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=6.6e-38  Score=270.18  Aligned_cols=111  Identities=49%  Similarity=0.796  Sum_probs=108.2

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++|.|++++||++|||||+++|++++|++|+++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus        15 ~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpGG~v~~GlaIyd~m~~~~~~V~Ti~~G   94 (201)
T PRK14513         15 ERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPGGEVYAGLAIYDTMRYIKAPVSTICVG   94 (201)
T ss_pred             ccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCCCchhhHHHHHHHHHhcCCCEEEEEEe
Confidence            45779999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|++||+||||+++|||++|||..
T Consensus        95 ~AaS~As~il~aG~kgkR~~~pna~iMIHqp  125 (201)
T PRK14513         95 IAMSMGSVLLMAGDKGKRMALPNSRIMIHQG  125 (201)
T ss_pred             eehhhHHHHHhcCCCCcEEecCCeEEEEecC
Confidence            9999999999999999999999999999975

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=8e-38  Score=273.58  Aligned_cols=127  Identities=39%  Similarity=0.611  Sum_probs=115.5

Q ss_pred             CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChh----------HHHHHHHHHhcccccCCC
Q 027632           83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDD----------MANIIVAQLLYLDAVDPN  152 (221)
Q Consensus        83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~----------~A~~IiaqLl~Lds~d~~  152 (221)
                      +.++|.+||......    ..++|       |++++|+++|||||+++|+|+          +++.|++||++|+.++++
T Consensus         2 ~~~~~~~~~~~~~~~----~~~~~-------d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~   70 (222)
T PRK12552          2 PIMAVQAPYYGDAVM----RTPPP-------DLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPE   70 (222)
T ss_pred             CCCcccccccCCCCC----CCCCc-------CHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCC
Confidence            567888888744211    22433       799999999999999999999          999999999999999999


Q ss_pred             CceEEEEeCCCCC---------HHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          153 KDIIMYLNSPGGS---------VTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       153 kdI~LyINSPGGs---------V~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |+|+||||||||+         +++|++|||+|++++++|+|+|.|+|||||++||+||+||||+++|||++|||..
T Consensus        71 k~I~lyINSpGGsv~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP  147 (222)
T PRK12552         71 KPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQP  147 (222)
T ss_pred             CCEEEEEeCCCCCccccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccC
Confidence            9999999999988         7788999999999999999999999999999999999999999999999999974

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=8e-38  Score=273.21  Aligned_cols=111  Identities=50%  Similarity=0.736  Sum_probs=108.2

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      +++.|++++||++|||||+|+||+++++.+++||++|+.++++++|+||||||||+|++|++|||+|++++++|+|+|.|
T Consensus        42 ~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpGGsv~aGlaIyd~m~~~~~~V~tv~~G  121 (221)
T PRK14514         42 VTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPGGSVYAGLGIYDTMQFISSDVATICTG  121 (221)
T ss_pred             CcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCCcchhhHHHHHHHHHhcCCCEEEEEEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|+++||+++|||.+|||..
T Consensus       122 ~AAS~AslIl~aG~~gkR~~~pna~iMiHqP  152 (221)
T PRK14514        122 MAASMASVLLVAGTKGKRSALPHSRVMIHQP  152 (221)
T ss_pred             EehhHHHHHHhcCCCCceeeCCCCEEEeccC
Confidence            9999999999999999999999999999974

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=8.2e-37  Score=262.11  Aligned_cols=110  Identities=56%  Similarity=0.878  Sum_probs=107.2

Q ss_pred             chhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcce
Q 027632          111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       111 ~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.|++++|+++|||||+++||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|++++++|+|+|.|+
T Consensus        14 ~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpGG~v~~g~aIyd~m~~~~~~V~t~~~G~   93 (196)
T PRK12551         14 RAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPGGSVYDGLGIFDTMQHVKPDVHTVCVGL   93 (196)
T ss_pred             cccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCCcchhhHHHHHHHHHhcCCCEEEEEEEE
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |||||++|+++|++++|+++|||++|||..
T Consensus        94 AaS~AslIl~aG~~~~R~~~p~a~iMIHqP  123 (196)
T PRK12551         94 AASMGAFLLCAGAKGKRSSLQHSRIMIHQP  123 (196)
T ss_pred             ehhHHHHHHhCCCCCceecCCCCEEEEecC
Confidence            999999999999999999999999999974

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=1.5e-33  Score=239.76  Aligned_cols=111  Identities=55%  Similarity=0.885  Sum_probs=107.7

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++|.|++++|+++|+|||+|+|+++++++++++|++|+.+++.++|+||||||||++++|++|||+|+.++++|+|+|.|
T Consensus        14 ~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpGG~v~~g~~I~d~l~~~~~~v~t~~~G   93 (191)
T TIGR00493        14 ERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPGGSITAGLAIYDTMQFIKPDVSTICIG   93 (191)
T ss_pred             cccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEE
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|++++|+++|||++|||..
T Consensus        94 ~AaSaaslI~~aG~~~~r~~~p~s~imiH~p  124 (191)
T TIGR00493        94 QAASMGAFLLSAGAKGKRFSLPNSRIMIHQP  124 (191)
T ss_pred             eeccHHHHHHhcCCCCcEEecCCceEEEecC
Confidence            9999999999999999999999999999975

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=2.1e-32  Score=233.97  Aligned_cols=128  Identities=52%  Similarity=0.807  Sum_probs=116.0

Q ss_pred             CCCCCCCCcccccccCCCCCCCCCccccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCC
Q 027632           83 DLEVPSSPYIPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP  162 (221)
Q Consensus        83 ~~~~p~~~~~~~~~~~~~~~~~~p~~~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP  162 (221)
                      |+++|.+|+...  .+.  .      .+.|.|++++|+++|||||+|+|++++++.++++|++|+.+++.++|+||||||
T Consensus         2 ~~~~~~~p~~~~--~~~--~------~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSp   71 (200)
T PRK00277          2 PIMMNLVPMVIE--QTS--R------GERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSP   71 (200)
T ss_pred             CCCCCCCceeec--cCC--C------CcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECC
Confidence            567777776521  111  1      256889999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          163 GGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       163 GGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||++++|++|||+|++++.+|+|+|.|.|+|||++|+++|++++|+++||+.+|||..
T Consensus        72 GG~v~~g~~I~d~i~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p  129 (200)
T PRK00277         72 GGSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQP  129 (200)
T ss_pred             CCcHHHHHHHHHHHHhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccC
Confidence            9999999999999999999999999999999999999999999999999999999964

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=4.7e-33  Score=231.04  Aligned_cols=111  Identities=41%  Similarity=0.667  Sum_probs=105.9

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++|+||+++|+++|+|||+|+||+++++.++++|++|+.+++.++|+|+||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus         4 ~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G   83 (182)
T PF00574_consen    4 EEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPGGDVDAGLAIYDAIRSSKAPVTTVVLG   83 (182)
T ss_dssp             EEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECEBCHHHHHHHHHHHHHSSSEEEEEEEE
T ss_pred             cEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCCCccHHHHHHHHHHHhcCCCeEEEEeC
Confidence            58999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|+|||++|+++|++++|++.|||.+|||.+
T Consensus        84 ~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p  114 (182)
T PF00574_consen   84 LAASAATLIFLAGDKGKRYASPNSRFMIHQP  114 (182)
T ss_dssp             EEETHHHHHHHTSSTTTEEE-TT-EEEES-C
T ss_pred             ccccceehhhhcCCcCceeeeecCEEEeecc
Confidence            9999999999999999999999999999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=99.98  E-value=3.4e-32  Score=233.07  Aligned_cols=107  Identities=32%  Similarity=0.557  Sum_probs=104.4

Q ss_pred             HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      +++++|+++|+|||+|+|++++++.|+++|++|+.+++.++|+||||||||+|++|++|||+|++++.+|+|+|.|+|||
T Consensus        15 ~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~ag~aI~d~i~~~~~~V~t~v~G~AaS   94 (197)
T PRK14512         15 KSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEGGDIDAGFAIFNMIRFVKPKVFTIGVGLVAS   94 (197)
T ss_pred             hHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeeeHh
Confidence            68999999999999999999999999999999998888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||++|+++|++++|+++|||.+|||..
T Consensus        95 aaslIl~ag~~~~R~~~p~s~imiHqP  121 (197)
T PRK14512         95 AAALIFLAAKKESRFSLPNARYLLHQP  121 (197)
T ss_pred             HHHHHHhcCCcCceeECCCCcEEEEcC
Confidence            999999999999999999999999974

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=99.97  E-value=2.6e-31  Score=228.59  Aligned_cols=109  Identities=53%  Similarity=0.810  Sum_probs=106.1

Q ss_pred             hhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEccee
Q 027632          112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLA  191 (221)
Q Consensus       112 ~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlA  191 (221)
                      +.|++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|
T Consensus        25 ~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~g~~I~d~i~~~~~~v~t~~~G~a  104 (207)
T PRK12553         25 ESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPGGSVTAGDAIYDTIQFIRPDVQTVCTGQA  104 (207)
T ss_pred             cccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCCcHHHHHHHHHHHHhcCCCcEEEEEeeh
Confidence            45899999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          192 ASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       192 ASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||++|++||++++|+++|||.+|||..
T Consensus       105 aSaa~lI~~ag~~~~R~~~p~s~imiH~p  133 (207)
T PRK12553        105 ASAGAVLLAAGTPGKRFALPNARILIHQP  133 (207)
T ss_pred             hhHHHHHHHcCCcCcEEECCCchhhhcCc
Confidence            99999999999999999999999999975

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.97  E-value=6.4e-31  Score=218.54  Aligned_cols=107  Identities=55%  Similarity=0.938  Sum_probs=104.3

Q ss_pred             HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      |++++|+++|+|||+|+|++++++.++++|++++.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpGG~v~~~~~i~~~l~~~~~~v~t~~~g~aaS   80 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPGGSVTAGLAIYDTMQYIKPPVSTICLGLAAS   80 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEEeEehh
Confidence            58999999999999999999999999999999999888899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||++|+++|++|+|+++||+.+|||..
T Consensus        81 ~~~~i~~~g~~~~r~~~~~a~~~~h~~  107 (171)
T cd07017          81 MGALLLAAGTKGKRYALPNSRIMIHQP  107 (171)
T ss_pred             HHHHHHHcCCCCCEEEccchHHHHcCC
Confidence            999999999999999999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.95  E-value=2e-28  Score=202.79  Aligned_cols=98  Identities=51%  Similarity=0.738  Sum_probs=95.8

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcC
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAG  202 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAG  202 (221)
                      |+|||+|+|++.+++.++++|++|+.+++.++|+||||||||++++|++|||+|+.++.+|+|+|.|+|+|+|++|+++|
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpGG~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~~~~i~~a~   80 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPGGDVFAGMAIYDTIKFIKADVVTIIDGLAASMGSVIAMAG   80 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCCCcHHHHHHHHHHHHhcCCCceEEEEeehhhHHHHHHHcC
Confidence            79999999999999999999999999988999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEeecCceeEEeec
Q 027632          203 TKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       203 dkgkR~AlPnS~~MIh~~  220 (221)
                      ++|+|+++||+.+|||..
T Consensus        81 ~~g~r~~~p~a~~~ih~~   98 (162)
T cd07013          81 AKGKRFILPNAMMMIHQP   98 (162)
T ss_pred             CCCcEEEecCEEEEEccC
Confidence            999999999999999963

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.85  E-value=5.8e-21  Score=155.69  Aligned_cols=92  Identities=28%  Similarity=0.314  Sum_probs=87.5

Q ss_pred             EEEEcCccCh---hHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHh
Q 027632          124 IIRCGGPVED---DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLS  200 (221)
Q Consensus       124 IIfL~G~Idd---~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~Ila  200 (221)
                      -|+|+|+|++   .+++.+.++|..++.+   ++|.|+||||||++++|+.|||.|+.++.||.|++.|.|+|+|++|++
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspGG~~~~~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~   78 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPGGDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAM   78 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcchHHhHHHHHHh
Confidence            5899999999   7999999999988754   899999999999999999999999999999999999999999999999


Q ss_pred             cCCCCcEEeecCceeEEeec
Q 027632          201 AGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       201 AGdkgkR~AlPnS~~MIh~~  220 (221)
                      +||  +|++.|++.||+|.+
T Consensus        79 a~d--~~~~~~~a~~~~~~~   96 (160)
T cd07016          79 AGD--EVEMPPNAMLMIHNP   96 (160)
T ss_pred             cCC--eEEECCCcEEEEECC
Confidence            999  799999999999975

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.78  E-value=9.4e-19  Score=141.80  Aligned_cols=95  Identities=31%  Similarity=0.375  Sum_probs=91.9

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCC
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT  203 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGd  203 (221)
                      +|+|.|+|++.+.+.++++|..++.+++.+.|.|++|||||++.++..|+++|+.+++||.+++.|.|+|+|++|+++|+
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g~~la~~~d   80 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPGGRVDAGMNIVDALQASRKPVIAYVGGQAASAGYYIATAAN   80 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCCcCHHHHHHHHHHHHHhCCCEEEEECChhHHHHHHHHhCCC
Confidence            58999999999999999999999988889999999999999999999999999999999999999999999999999998


Q ss_pred             CCcEEeecCceeEEeec
Q 027632          204 KGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       204 kgkR~AlPnS~~MIh~~  220 (221)
                        +|++.|++.+++|.+
T Consensus        81 --~~~~~~~a~~~~~g~   95 (161)
T cd00394          81 --KIVMAPGTRVGSHGP   95 (161)
T ss_pred             --EEEECCCCEEEEeee
Confidence              899999999999976

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.77  E-value=2.1e-18  Score=145.81  Aligned_cols=94  Identities=17%  Similarity=0.160  Sum_probs=85.8

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHHh
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS  200 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Ila  200 (221)
                      +|.+.|.|++.++..+...|.... +++.+.|.|+||||||++++++.|||+|+..+.||.|+|.   |+|+|+|++|++
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPGG~v~~~~~I~~~i~~~~~pvv~~v~p~g~~AaSag~~I~~   81 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPGGRADAAGNIVQRIQQSKIPVIIYVYPPGASAASAGTYIAL   81 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCCCCHHHHHHHHHHHHhcCcCEEEEEecCCCeehhHHHHHHH
Confidence            578899999998888877776544 4568999999999999999999999999999999999999   999999999999


Q ss_pred             cCCCCcEEeecCceeEEeec
Q 027632          201 AGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       201 AGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|+  +|++.|++.++.|.+
T Consensus        82 a~~--~i~m~p~s~iG~~~p   99 (172)
T cd07015          82 GSH--LIAMAPGTSIGACRP   99 (172)
T ss_pred             hcC--ceEECCCCEEEEccc
Confidence            999  599999999999975

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.75  E-value=6.9e-18  Score=142.04  Aligned_cols=94  Identities=17%  Similarity=0.176  Sum_probs=88.5

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHHh
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLLS  200 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Ila  200 (221)
                      +|.|.|.|++..++.+..+|..++.+ +.+.|.|+||||||+++++..||+.|+.+++||.+.+.   |.|+|+|++|++
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~~-~~~~vvl~InSpGG~v~~~~~i~~~l~~~~kPvia~v~~~~G~AasgG~~ial   81 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEEG-GADALIIELDTPGGLLDSTREIVQAILASPVPVVVYVYPSGARAASAGTYILL   81 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHhC-CCCEEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEecCCCCchhHHHHHHH
Confidence            68899999999999999999998854 48999999999999999999999999999999999998   999999999999


Q ss_pred             cCCCCcEEeecCceeEEeec
Q 027632          201 AGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       201 AGdkgkR~AlPnS~~MIh~~  220 (221)
                      +||  +|++.|++.|++|.+
T Consensus        82 a~D--~iva~p~a~~g~~~~   99 (187)
T cd07020          82 AAH--IAAMAPGTNIGAAHP   99 (187)
T ss_pred             hCC--ceeECCCCcEEeccc
Confidence            999  789999999999875

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.61  E-value=3.8e-15  Score=126.07  Aligned_cols=94  Identities=18%  Similarity=0.205  Sum_probs=85.9

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCC
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGT  203 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGd  203 (221)
                      +|.|.|.|++..+..+...|.....+ +.+.|.|+||||||.++++..||+.|+..+.||.+++.|.|+|+|++|+++|+
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~~-~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d   81 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKEE-GADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD   81 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHhC-CCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence            57899999999888887777765544 37899999999999999999999999999999999999999999999999998


Q ss_pred             CCcEEeecCceeEEeec
Q 027632          204 KGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       204 kgkR~AlPnS~~MIh~~  220 (221)
                        ++++.|++.++.|.+
T Consensus        82 --~i~m~p~a~iG~~~~   96 (178)
T cd07021          82 --EIYMAPGATIGAAEP   96 (178)
T ss_pred             --eEEECCCCeEecCee
Confidence              799999999999865

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.45  E-value=2.5e-13  Score=123.82  Aligned_cols=91  Identities=26%  Similarity=0.283  Sum_probs=80.4

Q ss_pred             EEEEcCccChhH-------HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCC--CeEEEEcceechH
Q 027632          124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRP--DVSTVCVGLAASM  194 (221)
Q Consensus       124 IIfL~G~Idd~~-------A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~--~V~Tv~~GlAASm  194 (221)
                      +|.+.|.|.+..       .+.+.+.|..+..++..|.|.|.||||||++.+...||+.|+.++.  ||+..+.++|||+
T Consensus        63 vi~~~G~I~~~~~~~~~~~~~~~~~~l~~~~~~~~vk~vvL~inSPGG~v~as~~i~~~l~~l~~~~PV~v~v~~~AASG  142 (317)
T COG0616          63 VIHVEGAIVAGGGPLRFIGGDDIEEILRAARADPSVKAVVLRINSPGGSVVASELIARALKRLRAKKPVVVSVGGYAASG  142 (317)
T ss_pred             EEEeeeeeecCCCccccccHHHHHHHHHHHhcCCCCceEEEEEECcCCchhHHHHHHHHHHHHhhcCCEEEEECCeecch
Confidence            578888887543       5566677777777888999999999999999999999999999986  5999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCceeE
Q 027632          195 GAFLLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       195 Aa~IlaAGdkgkR~AlPnS~~M  216 (221)
                      |++|.|+||  +++|.|+|++-
T Consensus       143 GY~IA~aAd--~I~a~p~si~G  162 (317)
T COG0616         143 GYYIALAAD--KIVADPSSITG  162 (317)
T ss_pred             hhhhhccCC--EEEecCCceee
Confidence            999999998  79999999863

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.33  E-value=8.5e-12  Score=106.65  Aligned_cols=91  Identities=20%  Similarity=0.308  Sum_probs=82.9

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEcceechHHHHHHhc
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSA  201 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~--~~V~Tv~~GlAASmAa~IlaA  201 (221)
                      +|.|.|.|+ .....+.+.|..+..++..+.|.|++|||||++..+..|++.|+.++  +||.+++.|.|+|+|++|+++
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~Gg~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s~g~~la~a   82 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPGGTVVASEEIYEKLKKLKAKKPVVASMGGVAASGGYYIAMA   82 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCCCCHHHHHHHHHHHHHhcCCCCEEEEECCccchHHHHHHhc
Confidence            689999998 55678888888888777789999999999999999999999999998  999999999999999999999


Q ss_pred             CCCCcEEeecCceeEE
Q 027632          202 GTKGKYLCFLAWFLLV  217 (221)
Q Consensus       202 GdkgkR~AlPnS~~MI  217 (221)
                      ||  +|++.|++.+..
T Consensus        83 aD--~i~a~p~a~vg~   96 (207)
T TIGR00706        83 AD--EIVANPGTITGS   96 (207)
T ss_pred             CC--EEEECCCCeEEe
Confidence            98  799999997644

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.31  E-value=9.9e-12  Score=105.66  Aligned_cols=93  Identities=28%  Similarity=0.346  Sum_probs=84.9

Q ss_pred             cEEEEcCccC---hhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceechHHH
Q 027632          123 RIIRCGGPVE---DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGA  196 (221)
Q Consensus       123 RIIfL~G~Id---d~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAASmAa  196 (221)
                      -+|.|.|.|+   +.+...+..+|..+..++..+.|.|++|||||++..+..|+++|+.++   +||.+++.|.|+|+|+
T Consensus         3 ~vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~~~~~~i~~~i~~~~~~~kpvia~v~g~~~s~g~   82 (208)
T cd07023           3 AVIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPGGSVVASEEIYREIRRLRKAKKPVVASMGDVAASGGY   82 (208)
T ss_pred             EEEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCcEEEEECCcchhHHH
Confidence            3689999999   789999999999998888899999999999999999999999987664   6999999999999999


Q ss_pred             HHHhcCCCCcEEeecCceeEE
Q 027632          197 FLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       197 ~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      +|+++||  +|++.|++.+-.
T Consensus        83 ~lA~aaD--~i~a~~~s~~g~  101 (208)
T cd07023          83 YIAAAAD--KIVANPTTITGS  101 (208)
T ss_pred             HHHhhCC--EEEECCCCeEEe
Confidence            9999998  799999998743

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=99.20  E-value=5.3e-11  Score=116.60  Aligned_cols=90  Identities=26%  Similarity=0.287  Sum_probs=79.3

Q ss_pred             EEEEcCccChh-------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceech
Q 027632          124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS  193 (221)
Q Consensus       124 IIfL~G~Idd~-------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAAS  193 (221)
                      +|++.|+|.+.       ..+.+.++|..+..++..|.|.|+||||||++.++..|++.|+..+   +||.+.+.|+|||
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpGGs~~ase~i~~~i~~~~~~gKPVva~~~g~aaS  391 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPGGSVFASEIIRRELARAQARGKPVIVSMGAMAAS  391 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCcEEEEECCcccc
Confidence            79999999752       2456777777777777789999999999999999999999998654   7999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCcee
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFL  215 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~  215 (221)
                      +|++|+++||  +++|.|++++
T Consensus       392 ggY~iA~aaD--~I~a~p~t~~  411 (584)
T TIGR00705       392 GGYWIASAAD--YIVASPNTIT  411 (584)
T ss_pred             HHHHHHHhCC--EEEECCCCee
Confidence            9999999998  7999999987

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=99.17  E-value=1.7e-10  Score=98.94  Aligned_cols=84  Identities=25%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC--CCeEEEEcceechHHHHHHhcCCCCcEEeec
Q 027632          134 DMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR--PDVSTVCVGLAASMGAFLLSAGTKGKYLCFL  211 (221)
Q Consensus       134 ~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~--~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlP  211 (221)
                      .+...+++.|..++.++..+.|.|.+|||||++.....|++.|+.++  +||.+++.|.|+|+|++|+++||  ++++.|
T Consensus        25 ~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~gg~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~aD--~i~a~~  102 (214)
T cd07022          25 TSYEGIAAAIRAALADPDVRAIVLDIDSPGGEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAAD--RIVVTP  102 (214)
T ss_pred             ccHHHHHHHHHHHhhCCCCcEEEEEEeCCCCcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcCC--EEEEcC
Confidence            45778999999988888889999999999999999999999999998  99999999999999999999998  799999


Q ss_pred             CceeEEee
Q 027632          212 AWFLLVIF  219 (221)
Q Consensus       212 nS~~MIh~  219 (221)
                      ++.+..+-
T Consensus       103 ~a~~g~iG  110 (214)
T cd07022         103 TAGVGSIG  110 (214)
T ss_pred             CCeEEeee
Confidence            99976543

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>cd07014 S49_SppA Signal peptide peptidase A

Probab=99.10  E-value=5e-10  Score=93.06  Aligned_cols=84  Identities=25%  Similarity=0.195  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEcceechHHHHHHhcCCCCcEEeec
Q 027632          135 MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFL  211 (221)
Q Consensus       135 ~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlP  211 (221)
                      +.+.+.+.|..++.++..+.|.|.+|||||++.....+++.++.+   ++||.+.+.|.|+++|+.|+++||  .|++.|
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D--~i~a~~  100 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN--YIVANP  100 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC--EEEECC
Confidence            356888888888877778999999999999999888887766554   689999999999999999999999  799999


Q ss_pred             CceeEEeec
Q 027632          212 AWFLLVIFV  220 (221)
Q Consensus       212 nS~~MIh~~  220 (221)
                      ++.|++|.+
T Consensus       101 ~a~~~~~G~  109 (177)
T cd07014         101 STLVGSIGI  109 (177)
T ss_pred             CCeEEEech
Confidence            999999976

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>PRK11778 putative inner membrane peptidase; Provisional

Probab=99.04  E-value=9.3e-10  Score=101.87  Aligned_cols=95  Identities=17%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             EEEEcCccChhHHHHHHHHHhcc-cccCCCCceEEEEeCCCCCHHHHHHHHHHH---HhcCCCeEEEEcceechHHHHHH
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYL-DAVDPNKDIIMYLNSPGGSVTAGMAIFDTI---RHIRPDVSTVCVGLAASMGAFLL  199 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~L-ds~d~~kdI~LyINSPGGsV~aGlaIYDtm---r~i~~~V~Tv~~GlAASmAa~Il  199 (221)
                      +|.+.|.|+...+..+...+..+ ....+.+.|.|.||||||+|.+.--++..|   +..+.||++.+.++|||.|++|+
T Consensus        94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpGG~v~~s~~a~~~l~~lr~~~kpVva~v~~~AASggY~iA  173 (330)
T PRK11778         94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPGGVVHGYGLAASQLQRLRDAGIPLTVAVDKVAASGGYMMA  173 (330)
T ss_pred             EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCCCchhHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHH
Confidence            58889999977654444444432 222234789999999999998855555544   44457999999999999999999


Q ss_pred             hcCCCCcEEeecCceeEEeec
Q 027632          200 SAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       200 aAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |+||  +.++.|.+++..+-|
T Consensus       174 saAD--~I~A~P~a~vGSIGV  192 (330)
T PRK11778        174 CVAD--KIIAAPFAIVGSIGV  192 (330)
T ss_pred             HhCC--EEEECCCCeEEeeee
Confidence            9998  789999998876543

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.04  E-value=1.4e-09  Score=93.33  Aligned_cols=93  Identities=25%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             EEEEcCccChhH-------HHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHh---cCCCeEEEEcceech
Q 027632          124 IIRCGGPVEDDM-------ANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH---IRPDVSTVCVGLAAS  193 (221)
Q Consensus       124 IIfL~G~Idd~~-------A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~---i~~~V~Tv~~GlAAS  193 (221)
                      +|.+.|+|.+..       ...+...|..+..++..+.|.|.+|||||++.+...|+++|+.   .++||.+.+.|.|+|
T Consensus         4 v~~~~g~i~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s   83 (211)
T cd07019           4 VVFANGAIVDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSAGGAAAS   83 (211)
T ss_pred             EEEEEEEEeCCCCCCCccCHHHHHHHHHHHhhCCCceEEEEEEcCCCcCHHHHHHHHHHHHHHHhCCCCEEEEECCeehh
Confidence            677888887653       3678888888888877899999999999999999999887654   567999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEe
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      +|++|+++||  ++++.|++.+..+
T Consensus        84 ~gy~la~~aD--~i~a~~~a~~gsi  106 (211)
T cd07019          84 GGYWISTPAN--YIVANPSTLTGSI  106 (211)
T ss_pred             HHHHHHHhCC--EEEEcCCCEEEEe
Confidence            9999999998  7999999988654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PRK10949 protease 4; Provisional

Probab=99.02  E-value=8.4e-10  Score=109.16  Aligned_cols=92  Identities=26%  Similarity=0.260  Sum_probs=81.1

Q ss_pred             EEEEcCccChh-------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcC---CCeEEEEcceech
Q 027632          124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAAS  193 (221)
Q Consensus       124 IIfL~G~Idd~-------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAAS  193 (221)
                      +|.+.|.|.+.       ..+.++.+|.....++..|.|.|.||||||++.+...|++.|+..+   +||++...|+|||
T Consensus       330 vi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpGGs~~ase~i~~~i~~~r~~gKPVvas~~~~aAS  409 (618)
T PRK10949        330 VIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  409 (618)
T ss_pred             EEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCCCcHHHHHHHHHHHHHHHhcCCcEEEEECCCCcc
Confidence            69999999753       3567888888888888899999999999999999999999997664   7999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEE
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|++|+++||  +.+|.|.+++.-
T Consensus       410 ggY~iA~aad--~I~a~p~t~tGS  431 (618)
T PRK10949        410 GGYWISTPAN--YIVASPSTLTGS  431 (618)
T ss_pred             HHHHHHHhcC--EEEECCCCceee
Confidence            9999999998  789999887543

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.86  E-value=1.3e-08  Score=92.71  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=71.9

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEE
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYL  208 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~  208 (221)
                      ..|+.+.++.+...+...   +++++|.|.||+|||.+.++..|.+.|+..+.+++.++-..|.|+|++|+++||  +.+
T Consensus        70 ~~I~i~dse~v~raI~~~---~~~~~IdLii~TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIALaAD--eIv  144 (285)
T PF01972_consen   70 RYIDIDDSEFVLRAIREA---PKDKPIDLIIHTPGGLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIALAAD--EIV  144 (285)
T ss_pred             eeEcHhhHHHHHHHHHhc---CCCCceEEEEECCCCcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHHHhCC--eEE
Confidence            347777778776666543   446789999999999999999999999999999999999999999999999998  679


Q ss_pred             eecCcee
Q 027632          209 CFLAWFL  215 (221)
Q Consensus       209 AlPnS~~  215 (221)
                      +-|+|.+
T Consensus       145 M~p~a~L  151 (285)
T PF01972_consen  145 MGPGAVL  151 (285)
T ss_pred             ECCCCcc
Confidence            9999875

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.80  E-value=1.5e-08  Score=87.47  Aligned_cols=89  Identities=13%  Similarity=0.057  Sum_probs=78.5

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEcceechHHHHHHhcCCCC
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAFLLSAGTKG  205 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~IlaAGdkg  205 (221)
                      +..+......++.+|..+..++..+.|.|.+|||||++.+...|++.|+.+   ++||.+++.| |+|.|++|+++||  
T Consensus        24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~gg~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~lasaad--  100 (222)
T cd07018          24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLSGGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYYLASAAD--  100 (222)
T ss_pred             CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhhhhhhCC--
Confidence            445566778899999998888889999999999999999999999999765   4799999987 9999999999998  


Q ss_pred             cEEeecCceeEEeec
Q 027632          206 KYLCFLAWFLLVIFV  220 (221)
Q Consensus       206 kR~AlPnS~~MIh~~  220 (221)
                      ++++.|++.+.++-|
T Consensus       101 ~I~a~p~~~vg~iGv  115 (222)
T cd07018         101 EIYLNPSGSVELTGL  115 (222)
T ss_pred             EEEECCCceEEeecc
Confidence            799999999988754

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=9.8e-07  Score=84.56  Aligned_cols=90  Identities=20%  Similarity=0.248  Sum_probs=76.1

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc---ceechHHHHHH
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV---GLAASMGAFLL  199 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~---GlAASmAa~Il  199 (221)
                      .+|.+.|+|++.+++.+...|-.-+. +....+.|.+|+|||-+.+...|.+.+...+.||..++.   +.|+|+|++|+
T Consensus        29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPGGl~~sm~~iv~~i~~s~vPV~~yv~p~ga~AaSAGtyI~  107 (436)
T COG1030          29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPGGLLDSMRQIVRAILNSPVPVIGYVVPDGARAASAGTYIL  107 (436)
T ss_pred             EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCCchHHHHHHHHHHHHcCCCCEEEEEcCCCcchhchhhHHH
Confidence            46899999999999999888876544 336889999999999999999999999999999776654   47999999999


Q ss_pred             hcCCCCcEEeecCcee
Q 027632          200 SAGTKGKYLCFLAWFL  215 (221)
Q Consensus       200 aAGdkgkR~AlPnS~~  215 (221)
                      ++.+  .-++.|.+.+
T Consensus       108 m~~h--iaaMAPgT~i  121 (436)
T COG1030         108 MATH--IAAMAPGTNI  121 (436)
T ss_pred             HhcC--hhhhCCCCcc
Confidence            9998  4577776543

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=97.62  E-value=0.00018  Score=71.11  Aligned_cols=84  Identities=10%  Similarity=-0.063  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHhcccccCCCCceEEEEeC-CCCCHHHHHHHHHHHHhcC---CCeEEEEcceechHHHHHHhcCCCCcEEe
Q 027632          134 DMANIIVAQLLYLDAVDPNKDIIMYLNS-PGGSVTAGMAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKYLC  209 (221)
Q Consensus       134 ~~A~~IiaqLl~Lds~d~~kdI~LyINS-PGGsV~aGlaIYDtmr~i~---~~V~Tv~~GlAASmAa~IlaAGdkgkR~A  209 (221)
                      .....++.+|.....++..|.|.|.||+ |||++.....|+++|+..+   +||+++..+. +|.+++|++++|  +.++
T Consensus        76 ~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs~AD--~I~~  152 (584)
T TIGR00705        76 ISLFDIVNAIRQAADDRRIEGLVFDLSNFSGWDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLASFAD--EIIL  152 (584)
T ss_pred             cCHHHHHHHHHHHhcCCCceEEEEEccCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhhhCC--EEEE
Confidence            4566899999998888889999999996 6788888889999998775   7999987754 799999999998  7899


Q ss_pred             ecCceeEEeec
Q 027632          210 FLAWFLLVIFV  220 (221)
Q Consensus       210 lPnS~~MIh~~  220 (221)
                      .|.+.+.++-+
T Consensus       153 ~p~G~v~~~G~  163 (584)
T TIGR00705       153 NPMGSVDLHGF  163 (584)
T ss_pred             CCCceEEeece
Confidence            99999887643

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK10949 protease 4; Provisional

Probab=97.49  E-value=0.00031  Score=70.12  Aligned_cols=85  Identities=15%  Similarity=0.015  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH-HHHHHHHHhcC---CCeEEEEcceechHHHHHHhcCCCCcEE
Q 027632          133 DDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-MAIFDTIRHIR---PDVSTVCVGLAASMGAFLLSAGTKGKYL  208 (221)
Q Consensus       133 d~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG-laIYDtmr~i~---~~V~Tv~~GlAASmAa~IlaAGdkgkR~  208 (221)
                      +.....++.+|.....++..+.|.|.||+|||...+. ..|+++|+..+   +||+++ ...+++.+++|++++|  +.+
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~gG~~~a~~~eI~~ai~~fk~sGKpVvA~-~~~~~s~~YyLASaAD--~I~  170 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFAGADQPSMQYIGKALREFRDSGKPVYAV-GDSYSQGQYYLASFAN--KIY  170 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEE-ecCccchhhhhhhhCC--EEE
Confidence            3445678888988888888999999999999876655 78999998775   689987 5555789999999998  789


Q ss_pred             eecCceeEEeec
Q 027632          209 CFLAWFLLVIFV  220 (221)
Q Consensus       209 AlPnS~~MIh~~  220 (221)
                      +.|.+.+.++-+
T Consensus       171 l~P~G~v~~~G~  182 (618)
T PRK10949        171 LSPQGVVDLHGF  182 (618)
T ss_pred             ECCCceEEEeee
Confidence            999999888754

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=97.45  E-value=0.00074  Score=55.59  Aligned_cols=87  Identities=13%  Similarity=0.014  Sum_probs=65.8

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH-----------------HHHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~-----------------aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.-+    |.|+++.                 ....++..|..++.||.+.+.|
T Consensus        23 ~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v~G  102 (195)
T cd06558          23 LSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAVNG  102 (195)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            567788888888888776554554444443    4455543                 2245667777888999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.+.|..+++++|  .|++.+++.|-+.+
T Consensus       103 ~a~g~G~~la~~~D--~~i~~~~~~~~~pe  130 (195)
T cd06558         103 AALGGGLELALACD--IRIAAEDAKFGLPE  130 (195)
T ss_pred             eeecHHHHHHHhCC--EEEecCCCEEechh
Confidence            99999999999998  89999998887654

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=97.23  E-value=0.0021  Score=57.42  Aligned_cols=97  Identities=20%  Similarity=0.164  Sum_probs=75.1

Q ss_pred             hcCCcE--EEEcCccChhHHHHHHHHHhcccccCCCCceE-EEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceechHH
Q 027632          119 LFQHRI--IRCGGPVEDDMANIIVAQLLYLDAVDPNKDII-MYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMG  195 (221)
Q Consensus       119 L~~~RI--IfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~-LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmA  195 (221)
                      .++.|.  |.+.+++-+.-+....+.|..-   ....-++ +.+|||||+|..++.+-..|+..+-++..--..+|+|..
T Consensus        71 ~~dgr~l~VvVse~~a~~da~sal~~lir~---~G~y~~t~v~lnSpGGsv~kA~~mgkLiRe~gfdt~v~s~A~CasaC  147 (245)
T COG3904          71 TLDGRQLPVVVSEPGANVDAASALGRLIRK---AGLYIATGVTLNSPGGSVAKACSMGKLIREDGFDTAVDSGAMCASAC  147 (245)
T ss_pred             hccCceeeEEEcCCCCCccHHHHHHHHHhc---cCceeEEEEEecCCCCcHHHHHhhhhhhhhcccCccccchhhhhccc
Confidence            355564  6667777665455555555431   2222334 678999999999999999999999888888889999999


Q ss_pred             HHHHhcCCCCcEEeecCceeEEeec
Q 027632          196 AFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       196 a~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++|++|.  +|++=|.+.+-+|-+
T Consensus       148 pl~fagGv--rRvve~~ayiGVHq~  170 (245)
T COG3904         148 PLMFAGGV--RRVVEDFAYIGVHQI  170 (245)
T ss_pred             hhhhhcce--eeeecccceeeeeec
Confidence            99999996  899999999999965

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=96.96  E-value=0.0073  Score=52.81  Aligned_cols=88  Identities=15%  Similarity=0.107  Sum_probs=61.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHH--------------HHHHHHHHHHhcCCCeEEEEcceec
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT--------------AGMAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~--------------aGlaIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      ++.++.+.+.+.+..++.++..+-|.|.    .=|.|+++.              ....+++.|..++.||.+.+.|.|.
T Consensus        29 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G~a~  108 (259)
T PRK06688         29 LTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNGPAV  108 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECCeee
Confidence            6667777777777666654333333332    113334432              1235677788889999999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          193 SMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.|..|++++|  -|++.+++.|-+.++
T Consensus       109 GgG~~lal~cD--~ria~~~a~f~~pe~  134 (259)
T PRK06688        109 GVGVSLALACD--LVYASESAKFSLPFA  134 (259)
T ss_pred             cHHHHHHHhCC--EEEecCCCEecCchh
Confidence            99999999999  799999998876543

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=96.87  E-value=0.0091  Score=52.43  Aligned_cols=48  Identities=21%  Similarity=0.144  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++..|..++.||.+.+.|.|.+.|..|++++|  -|++.+++.|-+.++
T Consensus        89 ~~~~~l~~~~kpvIAav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~  136 (260)
T PRK07511         89 DWIRAIRAFPKPVIAAVEGAAAGAGFSLALACD--LLVAARDAKFVMAYV  136 (260)
T ss_pred             HHHHHHHcCCCCEEEEECCeeehHHHHHHHhCC--EEEeeCCCEEecccc
Confidence            356677788999999999999999999999999  899999998876654

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=96.76  E-value=0.014  Score=51.13  Aligned_cols=88  Identities=14%  Similarity=0.062  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH------------HHHHHHHHHhcCCCeEEEEcceechH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMAIFDTIRHIRPDVSTVCVGLAASM  194 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a------------GlaIYDtmr~i~~~V~Tv~~GlAASm  194 (221)
                      ++.++.+.+.+.+..++.++..+-|.|.=    =|.|+++..            ...++..|..++.||.+.+.|.|.++
T Consensus        24 l~~~~~~~l~~a~~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  103 (248)
T PRK06072         24 LNLEMRNEFISKLKQINADPKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVTAGA  103 (248)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCeeehH
Confidence            67777888887777776543333232211    134455432            12345567788899999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCceeEEeec
Q 027632          195 GAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       195 Aa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |..|++++|  -|++.+++.|-+.++
T Consensus       104 G~~lal~cD--~~ia~~~a~f~~~~~  127 (248)
T PRK06072        104 CIGIALSTD--FKFASRDVKFVTAFQ  127 (248)
T ss_pred             HHHHHHhCC--EEEEcCCCEEecchh
Confidence            999999998  799999998876543

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=96.76  E-value=0.015  Score=51.84  Aligned_cols=88  Identities=17%  Similarity=0.121  Sum_probs=61.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-------------------laIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++...+.+.|..++.++..+-|.|.=+    |-|+++..-                   ..+++.|..++.||.+.+
T Consensus        41 l~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV  120 (277)
T PRK08258         41 LTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPIIAAV  120 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            666777777777766664332332222100    334444321                   245677888899999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.|.+.|.-|++++|  -|++.+++.|-+.++
T Consensus       121 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  151 (277)
T PRK08258        121 DGVCAGAGAILAMASD--LRLGTPSAKTAFLFT  151 (277)
T ss_pred             CCeeehHHHHHHHhCC--EEEecCCCEEecccc
Confidence            9999999999999999  799999999877654

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=96.65  E-value=0.017  Score=51.09  Aligned_cols=47  Identities=13%  Similarity=0.057  Sum_probs=41.5

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+.++
T Consensus       100 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~  146 (272)
T PRK06210        100 RYHFLTALRKPVIAAINGACAGIGLTHALMCD--VRFAADGAKFTTAFA  146 (272)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEeCCCEEechHH
Confidence            45678888999999999999999999999999  799999999876543

>PRK05869 enoyl-CoA hydratase; Validated

Probab=96.63  E-value=0.021  Score=49.55  Aligned_cols=91  Identities=16%  Similarity=0.076  Sum_probs=64.6

Q ss_pred             EEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEeCC------CCCHHH---------------HHHHHHHHHhc
Q 027632          125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTA---------------GMAIFDTIRHI  179 (221)
Q Consensus       125 IfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP------GGsV~a---------------GlaIYDtmr~i  179 (221)
                      |.|+.+    ++.++...+.+.|..++.++..+-|.|  .+.      |+++..               ...+++.|..+
T Consensus        21 itlnrp~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVl--tg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~   98 (222)
T PRK05869         21 LLLSRPPTNALTRQVYREIVAAANELGRRDDVAAVIL--YGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAI   98 (222)
T ss_pred             EEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence            445544    667777778777777775443343332  333      344322               12466778888


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.||.+.+.|.|..+|..|++++|  .|++.+++.|-+-+
T Consensus        99 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  136 (222)
T PRK05869         99 PKPTVAAITGYALGAGLTLALAAD--WRVSGDNVKFGATE  136 (222)
T ss_pred             CCCEEEEEcCEeecHHHHHHHhCC--EEEecCCCEEcCch
Confidence            999999999999999999999999  79999998876544

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=96.53  E-value=0.022  Score=50.06  Aligned_cols=88  Identities=8%  Similarity=0.011  Sum_probs=59.8

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      ++.++.+.+.+.+..++.++..+-|.|.=    =|.|+++..             ...+++.|..++.||.+.+.|.|.+
T Consensus        26 l~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~G  105 (255)
T PRK09674         26 LNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGYALG  105 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCEeeh
Confidence            56666666666666655433222222210    133444321             1245677888999999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.-|++++|  -|++.+++.|.+-++
T Consensus       106 gG~~lalacD--~~ia~~~a~f~~pe~  130 (255)
T PRK09674        106 AGCELALLCD--IVIAGENARFGLPEI  130 (255)
T ss_pred             HHHHHHHhCC--EEEecCCCEEeCchh
Confidence            9999999999  799999998876553

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=96.53  E-value=0.02  Score=50.40  Aligned_cols=47  Identities=23%  Similarity=0.373  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+.+
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~~e  140 (266)
T PRK05981         94 PFLRRLRNLPCPIVTAVNGPAAGVGMSFALMGD--LILCARSAYFLQAF  140 (266)
T ss_pred             HHHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEecCCCEEechH
Confidence            366778888999999999999999999999999  79999998886544

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=96.53  E-value=0.023  Score=49.97  Aligned_cols=94  Identities=12%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             EEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-----------------HHHHHHHHHhc
Q 027632          125 IRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-----------------GMAIFDTIRHI  179 (221)
Q Consensus       125 IfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-----------------GlaIYDtmr~i  179 (221)
                      |.|+.+    ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.+                 ...+++.|..+
T Consensus        17 itlnrp~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (257)
T PRK06495         17 VTLDNPPVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIREC   96 (257)
T ss_pred             EEECCCccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhC
Confidence            455554    666777777777776654433332222111    23333321                 12356677888


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus        97 ~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  135 (257)
T PRK06495         97 AKPVIAAVNGPALGAGLGLVASCD--IIVASENAVFGLPEI  135 (257)
T ss_pred             CCCEEEEECCeeehhHHHHHHhCC--EEEecCCCEeeChhh
Confidence            999999999999999999999999  799999998866543

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=96.50  E-value=0.024  Score=50.04  Aligned_cols=46  Identities=11%  Similarity=0.007  Sum_probs=41.2

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|+.+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        92 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~pe  137 (262)
T PRK07468         92 MLKALNDLPKPLIGRIQGQAFGGGVGLISVCD--VAIAVSGARFGLTE  137 (262)
T ss_pred             HHHHHHcCCCCEEEEECCEEEhHHHHHHHhCC--EEEEeCCCEEeCch
Confidence            57788899999999999999999999999999  79999999876544

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=96.50  E-value=0.026  Score=49.49  Aligned_cols=48  Identities=13%  Similarity=0.092  Sum_probs=42.3

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++..|+.+++||.+.+.|.|..+|..|++++|  -|++.+++.|-+-++
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~la~acD--~ria~~~a~f~~pe~  135 (251)
T PRK06023         88 DFLIALAEAEKPIVSGVDGLAIGIGTTIHLHCD--LTFASPRSLFRTPFV  135 (251)
T ss_pred             HHHHHHHhCCCCEEEEeCCceecHHHHHHHhCC--EEEEeCCCEecCccc
Confidence            456788888999999999999999999999999  899999998876543

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=96.49  E-value=0.023  Score=49.90  Aligned_cols=86  Identities=13%  Similarity=0.060  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHHH----------------------HHHHHHHHhcCCC
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTAG----------------------MAIFDTIRHIRPD  182 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~aG----------------------laIYDtmr~i~~~  182 (221)
                      ++.++.+.+.+.|..++.++..+-|.|  .      |.|+++..-                      ..+++.|+.++.|
T Consensus        27 l~~~~~~~l~~al~~~~~d~~vr~vvl--~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp  104 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDRGIRAVIL--SGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPVP  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCCeEEEE--ECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCCC
Confidence            667777777777777665433332222  3      334443310                      1134556788999


Q ss_pred             eEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          183 VSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       183 V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.+.+.|.|.++|.-|++++|  -|++.+++.|-+.++
T Consensus       105 vIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  140 (262)
T PRK07509        105 VIAALEGVCFGGGLQIALGAD--IRIAAPDTKLSIMEA  140 (262)
T ss_pred             EEEEECCeeecchHHHHHhCC--EEEecCCCEeecchh
Confidence            999999999999999999999  799999998876553

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=96.46  E-value=0.03  Score=50.55  Aligned_cols=93  Identities=15%  Similarity=0.209  Sum_probs=67.1

Q ss_pred             CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHHH---hcCCCeEEEEcce
Q 027632          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTIR---HIRPDVSTVCVGL  190 (221)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtmr---~i~~~V~Tv~~Gl  190 (221)
                      ++++...+|-++.+-......-+..-+.  -.-||.-.+||||..+..       +..+...+.   ..+.|+.+++.|-
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~R~~~lA~~--~~lPvV~lvDtpGa~~g~~aE~~G~~~~ia~~~~~~s~~~VP~IsVI~G~  146 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKALRLMKQAEK--FGRPVVTFINTAGAYPGVGAEERGQGEAIARNLMEMSDLKVPIIAIIIGE  146 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCcCCCHhHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            4456667788888866655443332222  257999999999986421       234555444   4468999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |.|.|++.++.+|  ..+++|++.+.+
T Consensus       147 ~~gGgA~a~~~~D--~v~m~~~a~~~v  171 (256)
T PRK12319        147 GGSGGALALAVAD--QVWMLENTMYAV  171 (256)
T ss_pred             cCcHHHHHhhcCC--EEEEecCceEEE
Confidence            9999999998887  789999998765

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.46  E-value=0.018  Score=53.57  Aligned_cols=93  Identities=17%  Similarity=0.167  Sum_probs=66.4

Q ss_pred             CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEcce
Q 027632          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTI---RHIRPDVSTVCVGL  190 (221)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtm---r~i~~~V~Tv~~Gl  190 (221)
                      ++++-..+|.++++-......-+..-+.  -.-||.-++|+||..+..       +.+|...+   -....|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R~m~lA~~--f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP~IsVViGe  199 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALRLMKMAER--FKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVPVICTVIGE  199 (316)
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEecc
Confidence            4555566687888766655443332222  257999999999977322       33455544   45568999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |+|+|++.++.+|  ..+++||+.+-+
T Consensus       200 ggsGGAla~~~aD--~v~m~~~a~~sV  224 (316)
T TIGR00513       200 GGSGGALAIGVGD--KVNMLEYSTYSV  224 (316)
T ss_pred             cccHHHhhhccCC--EEEEecCceEEe
Confidence            9999999887787  789999998765

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PLN02600 enoyl-CoA hydratase

Probab=96.43  E-value=0.028  Score=49.35  Aligned_cols=87  Identities=11%  Similarity=0.091  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++.+.+.+.+..++.++..+-|.|.=.     |.|+++..               ...+++.|..+++||.+.+.|.
T Consensus        19 l~~~~~~~l~~~~~~~~~d~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~   98 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQADASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVVEGA   98 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEecCe
Confidence            566677777777666664433332222110     22344422               1234566778899999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.++|.-|.+++|  -|++.+++.|.+-+
T Consensus        99 a~GgG~~lala~D--~~ia~~~a~f~~pe  125 (251)
T PLN02600         99 ALGGGLELALSCD--LRICGEEAVFGLPE  125 (251)
T ss_pred             ecchhHHHHHhCC--EEEeeCCCEEeCcc
Confidence            9999999999999  79999999886543

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=96.41  E-value=0.027  Score=49.61  Aligned_cols=45  Identities=20%  Similarity=0.067  Sum_probs=39.7

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .++..|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+
T Consensus        85 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~  129 (261)
T PRK03580         85 AGLTEIFDLDKPVIAAVNGYAFGGGFELALAAD--FIVCADNASFAL  129 (261)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHHHHHHHHCC--EEEecCCCEEeC
Confidence            356678888999999999999999999999999  799999988754

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=96.40  E-value=0.021  Score=49.27  Aligned_cols=85  Identities=12%  Similarity=0.007  Sum_probs=65.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC------CCCH---------------HHHHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSV---------------TAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP------GGsV---------------~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++.+.+...|..++.++..+  .+.|.+.      |+++               .....++..|..++.||.+.+.|
T Consensus        22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G   99 (245)
T PF00378_consen   22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG   99 (245)
T ss_dssp             BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence            67888888999888888765445  3444443      3443               33446788888999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.+.|..+++++|  -|++.+++.|-+-+
T Consensus       100 ~a~GgG~~lala~D--~~ia~~~a~f~~pe  127 (245)
T PF00378_consen  100 HAVGGGFELALACD--FRIAAEDAKFGFPE  127 (245)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTTEEETGG
T ss_pred             cccccccccccccc--eEEeecccceeeee
Confidence            99999999999998  89999999876543

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=96.40  E-value=0.026  Score=50.85  Aligned_cols=47  Identities=21%  Similarity=0.025  Sum_probs=41.6

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+.++
T Consensus       105 ~~~~l~~~pkPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  151 (296)
T PRK08260        105 VTLRIFDSLKPVIAAVNGPAVGVGATMTLAMD--IRLASTAARFGFVFG  151 (296)
T ss_pred             HHHHHHhCCCCEEEEECCeeehHhHHHHHhCC--EEEeeCCCEEecchh
Confidence            56678888999999999999999999999999  799999998876553

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=96.39  E-value=0.029  Score=49.44  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=60.8

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |.|+++..               ...+++.|..++.||.+.+.|.
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  110 (256)
T PRK06143         31 LGTPVILALTQALRWLAADPDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARIPGW  110 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            677777888887777765433333333111     23344321               1235677788899999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |.+.|.-|++++|  -|++.+++.|-+=
T Consensus       111 a~GgG~~lalacD--~~ia~~~a~f~~p  136 (256)
T PRK06143        111 CLGGGLELAAACD--LRIAAHDAQFGMP  136 (256)
T ss_pred             EeehhHHHHHhCC--EEEecCCCEEeCC
Confidence            9999999999999  7999999988653

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=96.38  E-value=0.031  Score=49.75  Aligned_cols=46  Identities=15%  Similarity=0.092  Sum_probs=39.8

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       101 ~~~~l~~~~kPvIaav~G~a~GgG~~LalacD--~ria~~~a~f~~pe  146 (276)
T PRK05864        101 VILALRRLHQPVIAAVNGPAIGGGLCLALAAD--IRVASSSAYFRAAG  146 (276)
T ss_pred             HHHHHHhCCCCEEEEECCEeehhHHHHHHhCC--EEEeeCCCEecCcc
Confidence            45667788999999999999999999999998  79999998876533

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=96.36  E-value=0.027  Score=52.60  Aligned_cols=93  Identities=17%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHH---HHHhcCCCeEEEEcce
Q 027632          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFD---TIRHIRPDVSTVCVGL  190 (221)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYD---tmr~i~~~V~Tv~~Gl  190 (221)
                      ++++-..+|-++++.......-+..-+.  -.-||.-.|++||..+..       +.+|..   +|-..+.|+.+++.|-
T Consensus       122 ~e~~~~~~G~~~peg~rKa~R~m~lA~~--f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiGe  199 (319)
T PRK05724        122 KEKIRRNFGMPRPEGYRKALRLMKMAEK--FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIGE  199 (319)
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3444455677777765555443332222  257999999999965421       224444   4446678999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |.|.|++.++.+|  ..+++|++.+-+
T Consensus       200 g~sGGAla~~~aD--~v~m~~~A~~sv  224 (319)
T PRK05724        200 GGSGGALAIGVGD--RVLMLEYSTYSV  224 (319)
T ss_pred             ccHHHHHHHhccC--eeeeecCceEee
Confidence            9999999888887  689999998754

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=96.36  E-value=0.03  Score=49.17  Aligned_cols=86  Identities=15%  Similarity=0.107  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-------GsV~a---------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.+..++.++..+-  +.|.+.|       +++..               ...+++.|..+++||.+.+.
T Consensus        28 l~~~~~~~l~~~~~~~~~d~~v~~--vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK05809         28 LNSETLKELDTVLDDIENDDNVYA--VILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcEE--EEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence            667777777777766664332232  2233433       33321               12466778888999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.|.+.|.-|++++|  -|++.+++.|.+-++
T Consensus       106 G~a~GgG~~lal~cD--~~va~~~a~f~~pe~  135 (260)
T PRK05809        106 GFALGGGCELSMACD--IRIASEKAKFGQPEV  135 (260)
T ss_pred             CeeecHHHHHHHhCC--EEEeeCCCEEeCccc
Confidence            999999999999999  799999998876553

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=96.35  E-value=0.033  Score=49.11  Aligned_cols=94  Identities=16%  Similarity=0.039  Sum_probs=64.3

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------HHHHHHHHHhcCCCe
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------GMAIFDTIRHIRPDV  183 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------GlaIYDtmr~i~~~V  183 (221)
                      +|.|+.+    ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++.+            ...++..|..++.||
T Consensus        13 ~itlnrp~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPv   92 (251)
T TIGR03189        13 RLRLARPKANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPI   92 (251)
T ss_pred             EEEeCCCCcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence            3555555    777778888887777765443332222111    33444432            113555677889999


Q ss_pred             EEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          184 STVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       184 ~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+.+.|.|.++|.-|.+++|  -|++.+++.|-+=+
T Consensus        93 Iaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe  126 (251)
T TIGR03189        93 LVAVRGQCLGGGLEVAAAGN--LMFAAPDAKLGQPE  126 (251)
T ss_pred             EEEecCeeeeHHHHHHHhCC--EEEEcCCCEEeCch
Confidence            99999999999999999999  79999998876533

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=96.32  E-value=0.022  Score=58.30  Aligned_cols=64  Identities=22%  Similarity=0.422  Sum_probs=51.8

Q ss_pred             CCceEEEEeCCCCCHH-------HHHHHHHHHH---hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          152 NKDIIMYLNSPGGSVT-------AGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       152 ~kdI~LyINSPGGsV~-------aGlaIYDtmr---~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .-||.-+|++||..+.       .+.+|...+.   ....|+.+++.|-|+|+|++.++.||  ..+++|++.+-+
T Consensus       242 gLPIVtLVDTpGA~pG~~AEe~Gq~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD--~VlMle~A~~sV  315 (762)
T PLN03229        242 GFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCAN--KLLMLENAVFYV  315 (762)
T ss_pred             CCCEEEEEECCCcCCCchhHHHhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCC--EEEEecCCeEEe
Confidence            5799999999997752       3445655555   55689999999999999999999988  689999998654

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=96.32  E-value=0.038  Score=48.67  Aligned_cols=85  Identities=13%  Similarity=0.051  Sum_probs=58.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE-----eCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEccee
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLA  191 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-----NSPGGsV~a--------------GlaIYDtmr~i~~~V~Tv~~GlA  191 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=     =|.||++.+              ...+++.|..++.||.+.+.|.|
T Consensus        26 l~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  105 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYDRQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQGYA  105 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEECCEE
Confidence            56666666766666665433333222211     123444432              12356778888999999999999


Q ss_pred             chHHHHHHhcCCCCcEEeecCceeEE
Q 027632          192 ASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       192 ASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .++|.-|++++|  -|++.+++.|-+
T Consensus       106 ~GgG~~lal~cD--~~ia~~~a~f~~  129 (256)
T TIGR03210       106 IGGGNVLVTICD--LTIASEKAQFGQ  129 (256)
T ss_pred             ehhhHHHHHhCC--EEEEeCCCEEec
Confidence            999999999999  799999988865

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=96.31  E-value=0.045  Score=48.55  Aligned_cols=85  Identities=15%  Similarity=-0.009  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++..             ...+++.|..+++||.+.+.|.|.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~a~G  107 (258)
T PRK06190         28 LSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGAAVT  107 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCEeec
Confidence            66777777777777666543333233211    134455432             1346778889999999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEE
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|.-|++++|  -|++.+++.|-+
T Consensus       108 gG~~lalacD--~~ia~~~a~f~~  129 (258)
T PRK06190        108 GGLELALACD--ILIASERARFAD  129 (258)
T ss_pred             HHHHHHHhCC--EEEEeCCCEEEC
Confidence            9999999998  799999988754

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=96.31  E-value=0.033  Score=49.01  Aligned_cols=85  Identities=13%  Similarity=0.017  Sum_probs=59.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC-------CCCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-------GGSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-------GGsV~a---------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.+..++.++..+-|.  |.+-       |+++..               ...+++.|..++.||.+.+.
T Consensus        26 l~~~~~~~l~~al~~~~~d~~vrvvV--l~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  103 (258)
T PRK09076         26 WTADSLQALKQLVLELNADKDVYALV--ITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAIN  103 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            66677777777776666543333222  2332       344321               12356678888999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       104 G~a~GgG~~lalacD--~~ia~~~a~f~~pe  132 (258)
T PRK09076        104 GYAMGGGLECALACD--IRIAEEQAQMALPE  132 (258)
T ss_pred             CEEecHHHHHHHhCC--EEEecCCCEeeCcc
Confidence            999999999999998  79999999886544

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=96.30  E-value=0.021  Score=50.07  Aligned_cols=87  Identities=13%  Similarity=0.051  Sum_probs=60.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceechH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM  194 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAASm  194 (221)
                      ++.++.+++.+.|..++.++..+-|.|.=+    |.|+++.+-            ..++..|..++.||.+.+.|.|..+
T Consensus        29 l~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~Gg  108 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHAIGG  108 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCceech
Confidence            566677777777666664332332322210    334543321            2577788889999999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCceeEEee
Q 027632          195 GAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       195 Aa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |..|++++|  -|++.+++.|-+.+
T Consensus       109 G~~lal~cD--~~ia~~~a~f~~pe  131 (249)
T PRK07110        109 GLVLGLYAD--IVVLSRESVYTANF  131 (249)
T ss_pred             HHHHHHhCC--EEEEeCCCEecCch
Confidence            999999999  79999998876544

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=96.23  E-value=0.038  Score=48.85  Aligned_cols=84  Identities=12%  Similarity=0.080  Sum_probs=59.0

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHH--------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~a--------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++.+.+.+.+..++.++ .+-|.|.=+      |.|+++..              -..+++.|+.++.||.+.+.|.
T Consensus        28 l~~~~~~~l~~al~~~~~d~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav~G~  106 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNRPE-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMVEGS  106 (261)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEEecE
Confidence            67777777777777666432 333332211      23444422              1235677888899999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |..+|.-|++++|  -|++.+.+.|-+
T Consensus       107 a~GgG~~lalacD--~~ia~~~a~f~~  131 (261)
T PRK11423        107 VWGGAFELIMSCD--LIIAASTSTFAM  131 (261)
T ss_pred             EechHHHHHHhCC--EEEecCCCEecC
Confidence            9999999999998  799999988764

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=96.22  E-value=0.044  Score=48.31  Aligned_cols=86  Identities=10%  Similarity=0.039  Sum_probs=59.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceech
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++..             ...+++.|..+++||.+.+.|.|.+
T Consensus        32 l~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a~G  111 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGYALG  111 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccEEEc
Confidence            67777777777777666443333332211    133444422             1235667778899999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEe
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .|.-|++++|  -|++.+++.|-+=
T Consensus       112 gG~~lalacD--~ria~~~a~f~~p  134 (261)
T PRK08138        112 GGCELAMHAD--IIVAGESASFGQP  134 (261)
T ss_pred             HHHHHHHhCC--EEEecCCCEeeCc
Confidence            9999999998  7899999887653

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=96.21  E-value=0.031  Score=49.73  Aligned_cols=47  Identities=19%  Similarity=0.149  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+++.|..++.||.+.+.|.|.++|..|++++|  -|++.+++.|-+-+
T Consensus       102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe  148 (275)
T PLN02664        102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTACD--IRYCSEDAFFSVKE  148 (275)
T ss_pred             HHHHHHHhCCCCEEEEECCccccchHHHHHhCC--EEEecCCCEeccHH
Confidence            356678888999999999999999999999999  79999999886543

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=96.20  E-value=0.036  Score=48.50  Aligned_cols=86  Identities=10%  Similarity=0.112  Sum_probs=60.7

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHH----------HHHHHHHHHhcCCCeEEEEcceechHHH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA----------GMAIFDTIRHIRPDVSTVCVGLAASMGA  196 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~a----------GlaIYDtmr~i~~~V~Tv~~GlAASmAa  196 (221)
                      ++.++..++.+.+..++. +..+-|.|.    .=|.|+++..          ...+++.|..++.||.+.+.|.|.++|.
T Consensus        24 l~~~~~~~l~~al~~~~~-~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~GgG~  102 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-ESARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIGAGL  102 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-CCceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccccHH
Confidence            788888888888777663 223322221    1134455431          1235667778899999999999999999


Q ss_pred             HHHhcCCCCcEEeecCceeEEee
Q 027632          197 FLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       197 ~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|++++|  -|++.+++.|-+=+
T Consensus       103 ~lal~cD--~~ia~~~a~f~~pe  123 (243)
T PRK07854        103 QLAMACD--LRVVAPEAYFQFPV  123 (243)
T ss_pred             HHHHhCC--EEEEcCCCEEeccc
Confidence            9999998  79999998876533

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=96.19  E-value=0.043  Score=48.12  Aligned_cols=85  Identities=16%  Similarity=0.147  Sum_probs=59.3

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------H-----HHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------G-----MAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------G-----laIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++.+++.+.|..++.++ .+-|.|.=+    |.|+++.+             .     ..+++.|..++.||.+.+.
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  101 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCAVN  101 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            66777777777777776543 433333211    23344321             0     1245678888999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+-
T Consensus       102 G~a~GgG~~lala~D--~ria~~~a~f~~p  129 (256)
T TIGR02280       102 GVAAGAGANLALACD--IVLAAESARFIQA  129 (256)
T ss_pred             CeeehHHHHHHHhCC--EEEecCCCEEeCh
Confidence            999999999999999  7999999887643

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=96.18  E-value=0.041  Score=52.64  Aligned_cols=93  Identities=11%  Similarity=-0.009  Sum_probs=66.4

Q ss_pred             cEEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH------------H----HHH---H
Q 027632          123 RIIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------------M----AIF---D  174 (221)
Q Consensus       123 RIIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG------------l----aIY---D  174 (221)
                      ++|.|+-+     ++.++.+.+...|..++.++..+-|.|.=+    |-||++.+-            .    .+|   .
T Consensus        53 ~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~  132 (407)
T PLN02851         53 RAAILNRPSSLNALTIPMVARLKRLYESWEENPDIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLYKFVY  132 (407)
T ss_pred             EEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHH
Confidence            57888776     888999999999998876543432222211    346665321            1    122   2


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|..+++||.+.+.|.|.++|.-|.++||  -|++.+++.|-.
T Consensus       133 ~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~fam  173 (407)
T PLN02851        133 LQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAH  173 (407)
T ss_pred             HHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEec
Confidence            34567899999999999999999999998  788888887754

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=96.17  E-value=0.031  Score=52.27  Aligned_cols=92  Identities=15%  Similarity=0.140  Sum_probs=64.0

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHH-------HHHHHHHHH---HhcCCCeEEEEcceec
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVT-------AGMAIFDTI---RHIRPDVSTVCVGLAA  192 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~-------aGlaIYDtm---r~i~~~V~Tv~~GlAA  192 (221)
                      ++-..+|-++++-......-+. +... -.-||.-+|++||..+.       .+.+|...+   -..+.|+.+++.|-++
T Consensus       127 ~~~~~~G~~~p~g~rKa~Rlm~-lA~~-f~lPIItlvDTpGA~~G~~AE~~G~~~aiar~l~~~a~~~VP~IsVViGegg  204 (322)
T CHL00198        127 NVLRNFGMPSPGGYRKALRLMK-HANK-FGLPILTFIDTPGAWAGVKAEKLGQGEAIAVNLREMFSFEVPIICTIIGEGG  204 (322)
T ss_pred             hhhhcCCCCCHHHHHHHHHHHH-HHHH-cCCCEEEEEeCCCcCcCHHHHHHhHHHHHHHHHHHHHcCCCCEEEEEeCccc
Confidence            3333456677765555543333 2222 25799999999997642       233555543   4567899999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          193 SMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |+|++.++.+|  ..++++|+.+.+.
T Consensus       205 sGGAlal~~aD--~V~m~e~a~~sVi  228 (322)
T CHL00198        205 SGGALGIGIGD--SIMMLEYAVYTVA  228 (322)
T ss_pred             HHHHHhhhcCC--eEEEeCCeEEEec
Confidence            99999888887  7899999988653

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=96.12  E-value=0.063  Score=47.17  Aligned_cols=86  Identities=17%  Similarity=0.168  Sum_probs=59.3

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH-------------------HHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG-------------------laIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++.+.+.+.+..++ ++..+-|.|.=    =|.|+++..-                   ..+++.|..+++||.+.+
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  106 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIAAV  106 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            56667777777777766 44333333321    1333443210                   124567788899999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.|.++|.-|++++|  -|++.+++.|.+-+
T Consensus       107 ~G~a~GgG~~lalacD--~ria~~~a~f~~pe  136 (262)
T PRK08140        107 NGVAAGAGANLALACD--IVLAARSASFIQAF  136 (262)
T ss_pred             CCeeehhHHHHHHhCC--EEEecCCCEEeccc
Confidence            9999999999999999  89999998876433

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=96.11  E-value=0.035  Score=53.72  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=60.4

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH-------HHHHHHHH---HhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA-------GMAIFDTI---RHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a-------GlaIYDtm---r~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |-++++-......-+..-+.  -.-||.-+||+||..+..       +.+|...|   -..+.|+.++++|-+.|+|++.
T Consensus       200 G~~~peGyRKAlR~mklAek--f~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l~ams~l~VPiISVViGeGgSGGAla  277 (431)
T PLN03230        200 AMPQPNGYRKALRFMRHAEK--FGFPILTFVDTPGAYAGIKAEELGQGEAIAFNLREMFGLRVPIIATVIGEGGSGGALA  277 (431)
T ss_pred             CCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHH
Confidence            55666655544433332222  257999999999976422       23555544   4556899999999999999999


Q ss_pred             HhcCCCCcEEeecCceeEE
Q 027632          199 LSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       199 laAGdkgkR~AlPnS~~MI  217 (221)
                      ++.||  ..+++||+.+.+
T Consensus       278 lg~aD--~VlMle~A~ysV  294 (431)
T PLN03230        278 IGCGN--RMLMMENAVYYV  294 (431)
T ss_pred             hhcCC--EEEEecCCEEEe
Confidence            99887  789999998754

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=96.11  E-value=0.036  Score=49.10  Aligned_cols=47  Identities=19%  Similarity=0.063  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus       100 ~~~~~i~~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  146 (272)
T PRK06142        100 AAINAVADCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVRE  146 (272)
T ss_pred             HHHHHHHhCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchh
Confidence            355667888999999999999999999999999  79999999886544

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=96.08  E-value=0.047  Score=48.16  Aligned_cols=47  Identities=15%  Similarity=-0.038  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|.+-+
T Consensus        88 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  134 (259)
T TIGR01929        88 DVQRQIRTCPKPVIAMVNGYAIGGGHVLHVVCD--LTIAAENARFGQTG  134 (259)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEehHHHHHHHhCC--EEEecCCCEecCcc
Confidence            456778888999999999999999999999999  79999998887644

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=96.08  E-value=0.039  Score=49.48  Aligned_cols=46  Identities=9%  Similarity=-0.120  Sum_probs=39.9

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|+.++.||.+.+.|.|.++|..|++++|  -|++.+++.|-+-+
T Consensus        99 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~ria~~~a~f~~pe  144 (278)
T PLN03214         99 FLVRLLRSRLATVCAIRGACPAGGCAVSLCCD--YRLQTTEGTMGLNE  144 (278)
T ss_pred             HHHHHHcCCCCEEEEEcCcccchHHHHHHhCC--EEEecCCCEecCcH
Confidence            45667888899999999999999999999999  79999998876543

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=96.08  E-value=0.045  Score=48.06  Aligned_cols=46  Identities=13%  Similarity=-0.025  Sum_probs=40.3

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|..+++||.+.+.|.|.++|.-|++++|  -|++.+++.|.+=+
T Consensus        92 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe  137 (260)
T PRK05980         92 MTARLEAFPKPVIAAVNGLAFGGGCEITEAVH--LAIASERALFAKPE  137 (260)
T ss_pred             HHHHHHhCCCCEEEEEcCEEEhhhhHHhHhCC--EEEecCCCEecCcc
Confidence            56677788999999999999999999999998  79999999886543

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=96.06  E-value=0.068  Score=47.11  Aligned_cols=47  Identities=21%  Similarity=0.113  Sum_probs=41.2

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .+++.|..+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+=+
T Consensus        83 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  129 (255)
T PRK08150         83 RVFDKIQYGRVPVIAALHGAVVGGGLELASAAH--IRVADESTYFALPE  129 (255)
T ss_pred             HHHHHHHhCCCCEEEEECCEEEcHHHHHHHhCC--EEEEeCCCEEeccc
Confidence            456778888999999999999999999999998  79999999886543

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=96.04  E-value=0.066  Score=47.50  Aligned_cols=47  Identities=6%  Similarity=-0.140  Sum_probs=42.0

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|.+.++
T Consensus        98 ~~~~i~~~~kPvIaav~G~a~GgG~~LalacD--~~ia~~~a~f~~pe~  144 (269)
T PRK06127         98 AQAALADYAKPTIACIRGYCIGGGMGIALACD--IRIAAEDSRFGIPAA  144 (269)
T ss_pred             HHHHHHhCCCCEEEEECCEEecHHHHHHHhCC--EEEeeCCCEeeCchh
Confidence            55678888999999999999999999999999  799999999887654

>PLN02888 enoyl-CoA hydratase

Probab=96.02  E-value=0.065  Score=47.57  Aligned_cols=86  Identities=19%  Similarity=0.099  Sum_probs=58.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceechH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAASM  194 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAASm  194 (221)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++...            ..++..|..++.||.+.+.|.|.+.
T Consensus        34 l~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a~Gg  113 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDDSVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFAITA  113 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCeeech
Confidence            66777777777777666543333222210    0233444311            2345567888999999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCceeEEe
Q 027632          195 GAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       195 Aa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |..|++++|  -|++.+++.|.+=
T Consensus       114 G~~lal~cD--~ria~~~a~f~~p  135 (265)
T PLN02888        114 GFEIALACD--ILVASRGAKFIDT  135 (265)
T ss_pred             HHHHHHhCC--EEEecCCCEecCc
Confidence            999999999  7999999887653

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=96.02  E-value=0.06  Score=47.72  Aligned_cols=86  Identities=9%  Similarity=0.025  Sum_probs=58.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-----------------HHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-----------------GlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++...+.+.|..++.++..+-|.|.=    =|.|+++.+                 ...++..|..++.||.+.+.|
T Consensus        36 l~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  115 (268)
T PRK07327         36 ADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSAIHG  115 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcC
Confidence            67777777877777776543333332210    133344321                 112345566778999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .|.+.|..|++++|  -|++.+++.|-+=
T Consensus       116 ~a~GgG~~lalacD--~ria~~~a~f~~p  142 (268)
T PRK07327        116 PAVGAGLVAALLAD--ISIAAKDARIIDG  142 (268)
T ss_pred             eeeehhhHHHHhCC--EEEecCCCEEeCc
Confidence            99999999999998  7999999887653

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=96.02  E-value=0.044  Score=48.00  Aligned_cols=47  Identities=15%  Similarity=-0.011  Sum_probs=40.9

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+..|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+.++
T Consensus        87 ~~~~l~~~~kPvIaav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~  133 (249)
T PRK05870         87 GFLAVASCPLPTIAAVNGAAVGAGLNLALAAD--VRIAGPKALFDARFQ  133 (249)
T ss_pred             HHHHHHhCCCCEEEEECCEeEchhHHHHHhCC--EEEEcCCCEEeCccc
Confidence            45567788999999999999999999999999  799999998876554

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=96.01  E-value=0.071  Score=46.77  Aligned_cols=45  Identities=16%  Similarity=0.049  Sum_probs=39.8

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .+++.|..++.||.+.+.|.|.++|..|++++|  -|++.+++.|.+
T Consensus        89 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~ria~~~a~f~~  133 (255)
T PRK07260         89 EISFAIKQLPKPVIMCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ  133 (255)
T ss_pred             HHHHHHHcCCCCEEEEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence            355677888999999999999999999999999  799999998764

>PLN02921 naphthoate synthase

Probab=95.95  E-value=0.068  Score=49.44  Aligned_cols=87  Identities=13%  Similarity=0.014  Sum_probs=61.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a----------------GlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |.||++..                ...+++.|+.++.||.+.+.|
T Consensus        91 l~~~~~~eL~~al~~~~~d~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAaVnG  170 (327)
T PLN02921         91 FRPRTVKELQRAFNDARDDSSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAMVAG  170 (327)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            677888888888777765432222222110     34455432                022456778889999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.++|..|++++|  -|++.+++.|-+.+
T Consensus       171 ~a~GGG~~LalacD--~riA~~~A~f~~pe  198 (327)
T PLN02921        171 YAVGGGHILHMVCD--LTIAADNAVFGQTG  198 (327)
T ss_pred             EEecHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence            99999999999999  79999999887644

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=95.92  E-value=0.053  Score=47.75  Aligned_cols=48  Identities=17%  Similarity=0.021  Sum_probs=42.0

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+++.|..+++||.+.+.|.|...|.-|++++|  -|++.+++.|.+-++
T Consensus        94 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  141 (266)
T PRK09245         94 RIPLALYNLEVPVIAAVNGPAIGAGCDLACMCD--IRIASETARFAESFV  141 (266)
T ss_pred             HHHHHHHcCCCCEEEEECCEeecHHHHHHHhCC--EEEecCCCEEccccc
Confidence            356678888999999999999999999999999  899999998876554

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=95.85  E-value=0.075  Score=46.51  Aligned_cols=47  Identities=15%  Similarity=0.000  Sum_probs=41.1

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .++..|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        85 ~~~~~l~~~~kpvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  131 (257)
T PRK07658         85 VTFERVEKFSKPVIAAIHGAALGGGLELAMSCH--IRFATESAKLGLPE  131 (257)
T ss_pred             HHHHHHHhCCCCEEEEEcCeeeeHHHHHHHhCC--EEEecCCCcccCcc
Confidence            466778889999999999999999999999998  79999998876544

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=95.83  E-value=0.078  Score=46.64  Aligned_cols=85  Identities=12%  Similarity=0.040  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCC-------CCHHH---------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSVTA---------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-------GsV~a---------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.+..++.++..+-  +.|.+-|       +++..               ...+++.|..++.||.+.+.
T Consensus        28 l~~~~~~~l~~al~~~~~d~~v~~--vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  105 (260)
T PRK07657         28 LSLALLEELQNILTQINEEANVRV--VILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAIN  105 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEE--EEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEEc
Confidence            677777778777777665432232  2233333       33321               12356677788999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       106 G~a~GgG~~lal~cD--~~ia~~~a~f~~pe  134 (260)
T PRK07657        106 GIALGGGLELALACD--FRIAAESASLGLTE  134 (260)
T ss_pred             CEeechHHHHHHhCC--EEEeeCCCEEcCch
Confidence            999999999999999  89999999887644

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=95.82  E-value=0.099  Score=45.94  Aligned_cols=46  Identities=11%  Similarity=-0.026  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|..+++||.+.+.|.|.++|.-|++++|  -|++.+++.|-+=+
T Consensus        86 ~~~~i~~~~kPvIAav~G~a~GgG~~Lal~cD--~ria~~~a~f~~pe  131 (249)
T PRK07938         86 AFRAVYECAVPVIAAVHGFCLGGGIGLVGNAD--VIVASDDATFGLPE  131 (249)
T ss_pred             HHHHHHhCCCCEEEEEcCEEeehHHHHHHhCC--EEEEeCCCEeeCcc
Confidence            55677788999999999999999999999999  79999998876533

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=95.76  E-value=0.079  Score=50.15  Aligned_cols=92  Identities=15%  Similarity=0.149  Sum_probs=64.1

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH-------------------HHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------------AIFDT  175 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl-------------------aIYDt  175 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+    |-||++.+-.                   .+...
T Consensus        21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~~v~~VVl~G~G~~FcAGgDl~~l~~~~~~~~~~~~~~~f~~~~~l~~~  100 (381)
T PLN02988         21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDPSVKLVILKGHGRAFCAGGDVAAVVRDIEQGNWRLGANFFSDEYMLNYV  100 (381)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCcccCcCHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence            4566554     778888889888888765443333322211    3356664311                   12235


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |..+++||.+.+.|.|.++|.-|.++||  .|++.+++.|-.
T Consensus       101 i~~~pKPvIa~v~G~a~GGG~~Lal~~D--~rvate~a~f~m  140 (381)
T PLN02988        101 MATYSKAQVSILNGIVMGGGAGVSVHGR--FRIATENTVFAM  140 (381)
T ss_pred             HHHCCCCEEEEecCeEeehhhHHhhcCC--eEEEcCCcEEeC
Confidence            6778999999999999999999999998  799999887753

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=95.72  E-value=0.11  Score=46.88  Aligned_cols=45  Identities=9%  Similarity=-0.044  Sum_probs=39.4

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .++..|..+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+
T Consensus       118 ~~~~~l~~~~kPvIAaV~G~a~GgG~~lalacD--~~ias~~a~f~~  162 (302)
T PRK08272        118 RGFMSLWHAHKPTVAKVHGYCVAGGTDIALHCD--QVIAADDAKIGY  162 (302)
T ss_pred             HHHHHHHhCCCCEEEEEccEeehhhHHHHHhCC--EEEEeCCCEecC
Confidence            356677888999999999999999999999999  789999887754

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=95.68  E-value=0.11  Score=45.57  Aligned_cols=48  Identities=17%  Similarity=-0.011  Sum_probs=41.3

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++..|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        90 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  137 (262)
T PRK05995         90 DMLRAIYRCPKPVIARVHGDAYAGGMGLVAACD--IAVAADHAVFCLSEV  137 (262)
T ss_pred             HHHHHHHcCCCCEEEEECCEEEhhHHHHHHhCC--EEEeeCCCEEeCccc
Confidence            355677788999999999999999999999999  799999998866443

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=95.66  E-value=0.094  Score=46.49  Aligned_cols=46  Identities=11%  Similarity=-0.060  Sum_probs=39.5

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++..|+.+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+=+
T Consensus        93 ~~~~l~~~~kPvIaaV~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe  138 (265)
T PRK05674         93 LMYNLYRLKIPTLAVVQGAAFGGALGLISCCD--MAIGADDAQFCLSE  138 (265)
T ss_pred             HHHHHHcCCCCEEEEEcCEEEechhhHhhhcC--EEEEeCCCEEeCcc
Confidence            45567778899999999999999999999998  79999998876533

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=95.64  E-value=0.11  Score=46.49  Aligned_cols=86  Identities=12%  Similarity=0.022  Sum_probs=58.2

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------------HHHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------------GMAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------------GlaIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..                   ...+++.|..++.||.+.+
T Consensus        32 l~~~m~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  111 (275)
T PRK09120         32 MSPTLNREMIDVLDALEFDDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTIAMV  111 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            66777777777666665433233222211    123344321                   1234566778899999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .|.|.++|.-|++++|  -|++.+++.|-+=
T Consensus       112 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~p  140 (275)
T PRK09120        112 NGWCFGGGFSPLVACD--LAIAADEAQFGLS  140 (275)
T ss_pred             cCEEechhHHHHHhCC--EEEEeCCcEecCC
Confidence            9999999999999999  7999999988653

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=95.64  E-value=0.13  Score=45.36  Aligned_cols=88  Identities=11%  Similarity=-0.067  Sum_probs=57.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHHH------------HHHHHHHHhcCCCeEEEEcceech
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG------------MAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~aG------------laIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=+     |.|+++..-            +.-+..+..++.||.+.+.|.|.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~G  107 (259)
T PRK06494         28 LHLDAHFELEEVFDDFAADPEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGVAMG  107 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCEEec
Confidence            566677777777776665433333333211     224444321            111122345678999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.-|++++|  -|++.+++.|-+-++
T Consensus       108 gG~~lalacD--~ria~~~a~f~~pe~  132 (259)
T PRK06494        108 GGFELALACD--LIVAAENATFALPEP  132 (259)
T ss_pred             HHHHHHHhCC--EEEEeCCCEEeCccc
Confidence            9999999998  799999998876543

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=95.62  E-value=0.11  Score=46.19  Aligned_cols=45  Identities=16%  Similarity=0.022  Sum_probs=40.1

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .+++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+
T Consensus        98 ~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~  142 (273)
T PRK07396         98 DLQRLIRTCPKPVIAMVAGYAIGGGHVLHLVCD--LTIAADNAIFGQ  142 (273)
T ss_pred             HHHHHHHhCCCCEEEEECCEEehHHHHHHHhCC--EEEeeCCcEEec
Confidence            356678888999999999999999999999998  799999988765

>PRK08139 enoyl-CoA hydratase; Validated

Probab=95.59  E-value=0.13  Score=45.72  Aligned_cols=46  Identities=15%  Similarity=0.088  Sum_probs=40.4

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        96 ~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  141 (266)
T PRK08139         96 VMQAIVALPQPVIARVHGIATAAGCQLVASCD--LAVAADTARFAVPG  141 (266)
T ss_pred             HHHHHHhCCCCEEEEECceeeHHHHHHHHhCC--EEEEeCCCEEeCcc
Confidence            55667888999999999999999999999998  79999999886543

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=95.59  E-value=0.087  Score=46.53  Aligned_cols=44  Identities=11%  Similarity=0.098  Sum_probs=39.0

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      +++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+
T Consensus        94 ~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~  137 (262)
T PRK06144         94 VLGALEQLRVPTIAAIAGACVGGGAAIAAACD--LRIATPSARFGF  137 (262)
T ss_pred             HHHHHHhCCCCEEEEECCeeeehHHHHHHhCC--EEEecCCCEeec
Confidence            55667788999999999999999999999999  799999988754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=95.53  E-value=0.15  Score=44.90  Aligned_cols=48  Identities=6%  Similarity=-0.097  Sum_probs=41.7

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++..|..++.||.+.+.|.|.+.|..|++++|  -|++.+++.|-+.++
T Consensus        87 ~~~~~l~~~~kPvIaav~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~  134 (255)
T PRK07112         87 DLWHRLATGPYVTIAHVRGKVNAGGIGFVAASD--IVIADETAPFSLSEL  134 (255)
T ss_pred             HHHHHHHcCCCCEEEEEecEEEcchhHHHHcCC--EEEEcCCCEEeCchh
Confidence            356667778899999999999999999999999  799999998877654

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=95.51  E-value=0.093  Score=47.29  Aligned_cols=44  Identities=11%  Similarity=0.010  Sum_probs=38.9

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      ++..|+.++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalacD--~ria~e~a~f~~  153 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVCD--LIVASDDAFFSD  153 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhCC--EEEeeCCCEecC
Confidence            44567888999999999999999999999999  799999988754

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=95.51  E-value=0.11  Score=45.54  Aligned_cols=44  Identities=14%  Similarity=0.067  Sum_probs=38.9

Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|+.++.||.+.+.|.|.+.|..|++++|  -|++.+++.|-+.++
T Consensus        87 ~l~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~  130 (255)
T PRK06563         87 VGRRLSKPLVVAVQGYCLTLGIELMLAAD--IVVAADNTRFAQLEV  130 (255)
T ss_pred             HHhcCCCCEEEEEcCeeecHHHHHHHhCC--EEEecCCCEEeChhh
Confidence            46778899999999999999999999999  799999998876543

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=95.50  E-value=0.069  Score=48.39  Aligned_cols=47  Identities=9%  Similarity=-0.072  Sum_probs=41.0

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++..|..+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~A~f~~pe~  150 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCAD--IVIASDDAVIGTPYS  150 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHCC--EEEEcCCcEEecccc
Confidence            45567888999999999999999999999999  799999998876553

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=95.49  E-value=0.12  Score=49.38  Aligned_cols=92  Identities=10%  Similarity=0.003  Sum_probs=62.1

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH-------------------HHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-------------------MAIFDT  175 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG-------------------laIYDt  175 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=    =|-||++.+-                   ..++..
T Consensus        49 ~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~~vrvVVl~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~~~~~~~l~~~  128 (401)
T PLN02157         49 TAILNRPPALNALTTHMGYRLQKLYKNWEEDPNIGFVMMKGSGRAFCAGGDIVSLYHLRKRGSPDAIREFFSSLYSFIYL  128 (401)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCCeEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHHHHHHH
Confidence            4455544     67777777777777766543333222221    1445665321                   012345


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |..+++||.+.+.|.|.+.|.-|.++||  -|++.+++.|-.
T Consensus       129 i~~~pkPvIA~v~G~a~GGG~~Lal~cD--~rvate~a~fa~  168 (401)
T PLN02157        129 LGTYLKPHVAILNGVTMGGGTGVSIPGT--FRVATDRTIFAT  168 (401)
T ss_pred             HHhCCCCEEEEEeCeEeehhHHHHHhCC--EEEEeCCCEEEC
Confidence            7788999999999999999999999998  799999888754

>PRK08321 naphthoate synthase; Validated

Probab=95.48  E-value=0.15  Score=46.18  Aligned_cols=44  Identities=23%  Similarity=0.040  Sum_probs=37.9

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEee-cCceeEE
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF-LAWFLLV  217 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~Al-PnS~~MI  217 (221)
                      +++.|..++.||.+.+.|.|...|.-|++++|  -|++. +++.|-+
T Consensus       127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalacD--~ria~~~~a~f~~  171 (302)
T PRK08321        127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVCD--LTLASREHARFKQ  171 (302)
T ss_pred             HHHHHHcCCCCEEEEEcCeeehHHHHHHHhCC--EEEEecCCCEEEC
Confidence            44567788999999999999999999999998  78998 5787754

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=95.46  E-value=0.15  Score=44.80  Aligned_cols=45  Identities=16%  Similarity=0.059  Sum_probs=39.9

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .++..|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+
T Consensus        85 ~~~~~l~~~~kpvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~  129 (257)
T PRK05862         85 TNWEKVARIRKPVIAAVAGYALGGGCELAMMCD--IIIAADTAKFGQ  129 (257)
T ss_pred             HHHHHHHhCCCCEEEEEccEEeHHHHHHHHHCC--EEEEeCCCEEeC
Confidence            356678888999999999999999999999999  799999988764

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=95.46  E-value=0.1  Score=48.32  Aligned_cols=46  Identities=9%  Similarity=-0.018  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++..|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+=+
T Consensus        92 ~~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe  137 (342)
T PRK05617         92 LNALIARYPKPYIALMDGIVMGGGVGISAHGS--HRIVTERTKMAMPE  137 (342)
T ss_pred             HHHHHHhCCCCEEEEEcCEEEccHhHHhhhCC--EEEEcCCCEeeCCc
Confidence            45667788899999999999999999999998  79999999886543

>PLN02267 enoyl-CoA hydratase/isomerase family protein

Probab=95.45  E-value=0.16  Score=44.43  Aligned_cols=85  Identities=12%  Similarity=0.078  Sum_probs=54.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH-----------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA-----------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a-----------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.+..++.++..+.+.|.-.     |.|+++..                 ...+++.|..++.||.+.+.
T Consensus        23 l~~~~~~eL~~al~~~~~d~~~~~vVV~~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  102 (239)
T PLN02267         23 LNPTLIDSIRSALRQVKSQATPGSVLITTAEGKFFSNGFDLAWAQAAGSAPSRLHLMVAKLRPLVADLISLPMPTIAAVT  102 (239)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEcCCCCceeCCcCHHHHhccccCHHHHHHHHHHHHHHHHHHhcCCCCEEEEEC
Confidence            666666667666666654322222222212     23444321                 12245667788899999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeec-CceeEE
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFL-AWFLLV  217 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlP-nS~~MI  217 (221)
                      |.|.++|..|++++|  -|++.+ .+.|.+
T Consensus       103 G~a~GgG~~lalacD--~ria~~~~a~f~~  130 (239)
T PLN02267        103 GHASAAGFILALSHD--YVLMRKDRGVLYM  130 (239)
T ss_pred             CcchHHHHHHHHHCC--EEEecCCCCeEec
Confidence            999999999999998  788875 456544

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=95.28  E-value=0.16  Score=44.73  Aligned_cols=46  Identities=15%  Similarity=0.034  Sum_probs=39.6

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .++..|..++.||.+.+.|.|.++|.-|++++|  -|++.+.+.|-+=
T Consensus        92 ~~~~~l~~~~kPvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~p  137 (260)
T PRK07827         92 ALLRAIVELPKPVIAAIDGHVRAGGFGLVGACD--IVVAGPESTFALT  137 (260)
T ss_pred             HHHHHHHhCCCCEEEEEcCeeecchhhHHHhCC--EEEEcCCCEEeCc
Confidence            355667788999999999999999999999999  7999998877553

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=95.27  E-value=0.083  Score=46.29  Aligned_cols=89  Identities=13%  Similarity=0.039  Sum_probs=64.6

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHH----------------HHHHHHHHhcCCCeEEEEcc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aG----------------laIYDtmr~i~~~V~Tv~~G  189 (221)
                      .++.++-..+.+.|..++.++..+-|.|.    .=|-|+++..-                ..++..|+.+++||.+.+.|
T Consensus        28 al~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  107 (257)
T COG1024          28 ALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAAVNG  107 (257)
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEEEcc
Confidence            46777777888877777764333322221    11334555431                12667888899999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|...|.-|++++|  -|+|.+++.|-+.+|
T Consensus       108 ~a~GgG~eLal~~D--~ria~~~a~f~~pe~  136 (257)
T COG1024         108 YALGGGLELALACD--IRIAAEDAKFGLPEV  136 (257)
T ss_pred             eEeechhhhhhcCC--eEEecCCcEecCccc
Confidence            99999999999999  799999999987765

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=95.25  E-value=0.21  Score=43.07  Aligned_cols=47  Identities=19%  Similarity=0.223  Sum_probs=39.9

Q ss_pred             HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC-ceeEEe
Q 027632          170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA-WFLLVI  218 (221)
Q Consensus       170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn-S~~MIh  218 (221)
                      ..++..|..+++||.+.+.|.|.+.|..|++++|  .|++.++ +.|-+-
T Consensus        81 ~~l~~~l~~~~kPvIAav~G~a~GgG~~lal~~D--~rva~~~~a~f~~p  128 (229)
T PRK06213         81 STLARRLLSHPKPVIVACTGHAIAKGAFLLLSAD--YRIGVHGPFKIGLN  128 (229)
T ss_pred             HHHHHHHHcCCCCEEEEEcCeeeHHHHHHHHhCC--eeeEecCCcEEECc
Confidence            3456667788999999999999999999999999  7999998 776543

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=95.20  E-value=0.15  Score=48.32  Aligned_cols=46  Identities=11%  Similarity=-0.112  Sum_probs=40.6

Q ss_pred             HHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       171 aIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .+++.|..++.||.+.+.|.|.+.|.-|+++||  -|++.+++.|-+-
T Consensus       115 ~l~~~i~~~pKPVIAAVnG~AiGGGleLALaCD--lrIAse~A~Fg~P  160 (360)
T TIGR03200       115 DMVSAILGCDKPVICRVNGMRIGGGQEIGMAAD--FTIAQDLANFGQA  160 (360)
T ss_pred             HHHHHHHhCCCCEEEEECCEeeeHHHHHHHhCC--EEEEcCCCEEeCc
Confidence            456678888999999999999999999999999  7999999887653

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=95.11  E-value=0.15  Score=45.72  Aligned_cols=85  Identities=14%  Similarity=0.114  Sum_probs=56.4

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCC----------HHHHHHHHHHHHhc---CCCeEEEEcceechHHHH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS----------VTAGMAIFDTIRHI---RPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGs----------V~aGlaIYDtmr~i---~~~V~Tv~~GlAASmAa~  197 (221)
                      ++-+-+.....-+...-..+...||...+++||-.          ..++-.+.+.+...   +.|+.+++.|-+.|.|++
T Consensus        45 ~g~~~~~k~A~~v~~~~d~~f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~l  124 (238)
T TIGR03134        45 VGLDEALALAQAVLDVIEADDKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFL  124 (238)
T ss_pred             CChHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHH
Confidence            55444444444444421123478999999999954          34444444555544   489999999999998887


Q ss_pred             HHhcCCCCcEEeecCceeE
Q 027632          198 LLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAGdkgkR~AlPnS~~M  216 (221)
                      -+.-+ ....+++|++.+-
T Consensus       125 amg~~-ad~v~Alp~A~i~  142 (238)
T TIGR03134       125 AHGLQ-ADRIIALPGAMVH  142 (238)
T ss_pred             HHccC-cCeEEEcCCcEEE
Confidence            77532 2479999999763

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>PRK08788 enoyl-CoA hydratase; Validated

Probab=95.08  E-value=0.11  Score=47.19  Aligned_cols=38  Identities=8%  Similarity=-0.206  Sum_probs=34.2

Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+
T Consensus       119 ~~pkPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~  156 (287)
T PRK08788        119 GAGAISIALVQGDALGGGFEAALSHH--TIIAERGAKMGF  156 (287)
T ss_pred             CCCCCEEEEECCeeehHHHHHHHhCC--EEEecCCCEeeC
Confidence            46789999999999999999999998  799999987754

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=94.94  E-value=0.24  Score=43.48  Aligned_cols=85  Identities=20%  Similarity=-0.007  Sum_probs=56.1

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHH----------HHHHHH-HhcCCCeEEEEcceechHH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM----------AIFDTI-RHIRPDVSTVCVGLAASMG  195 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGl----------aIYDtm-r~i~~~V~Tv~~GlAASmA  195 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.    .=|.|+++..-.          .+...+ ..++.||.+.+.|.|.++|
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~GgG  106 (254)
T PRK08252         27 VNAAVAQGLAAALDELDADPDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYALAGG  106 (254)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEehHH
Confidence            6777777787777777654333333221    113445543210          111111 3567899999999999999


Q ss_pred             HHHHhcCCCCcEEeecCceeEE
Q 027632          196 AFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       196 a~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .-|++++|  -|++.+++.|-+
T Consensus       107 ~~lalacD--~~ia~~~a~f~~  126 (254)
T PRK08252        107 FELALACD--LIVAARDAKFGL  126 (254)
T ss_pred             HHHHHhCC--EEEEeCCCEEeC
Confidence            99999998  799999988764

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=94.62  E-value=0.33  Score=42.77  Aligned_cols=47  Identities=17%  Similarity=0.129  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++..|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+.++
T Consensus        90 ~~~~l~~~~~pvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  136 (260)
T PRK07659         90 IVVTLYTMPKLTISAIHGPAAGLGLSIALTAD--YVIADISAKLAMNFI  136 (260)
T ss_pred             HHHHHHhCCCCEEEEecCceecHHHHHHHhCC--EEEEcCCCEEcCchh
Confidence            44556677899999999999999999999999  799999998866543

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=94.58  E-value=0.3  Score=43.04  Aligned_cols=43  Identities=12%  Similarity=-0.045  Sum_probs=37.5

Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        96 ~~~~~kpvIaav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  138 (263)
T PRK07799         96 GRRLTKPLIAAVEGPAIAGGTEILQGTD--IRVAGESAKFGISEA  138 (263)
T ss_pred             HhcCCCCEEEEECCeEeccHHHHHHhCC--EEEecCCCEecCccc
Confidence            4567899999999999999999999998  799999998866543

>PRK08259 enoyl-CoA hydratase; Provisional

Probab=94.52  E-value=0.33  Score=42.78  Aligned_cols=39  Identities=15%  Similarity=-0.028  Sum_probs=34.9

Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .+++||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-
T Consensus        91 ~~~kPvIaav~G~a~GgG~~lalacD--~~ia~~~a~f~~p  129 (254)
T PRK08259         91 RLSKPVIAAVSGYAVAGGLELALWCD--LRVAEEDAVFGVF  129 (254)
T ss_pred             cCCCCEEEEECCEEEhHHHHHHHhCC--EEEecCCCEecCc
Confidence            56789999999999999999999999  8999999987553

>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=94.33  E-value=0.32  Score=45.79  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=63.5

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEeC------CCCCHHHH----------H-------HHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS------PGGSVTAG----------M-------AIFDT  175 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINS------PGGsV~aG----------l-------aIYDt  175 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.  |.+      -||++..-          .       .+...
T Consensus        23 ~ItLnrP~~~Nal~~~m~~eL~~al~~~~~d~~vrvvV--l~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (379)
T PLN02874         23 VITLNRPRQLNVISLSVVSLLAEFLEQWEKDDSVELII--IKGAGRAFSAGGDLKMFYDGRESDDSCLEVVYRMYWLCYH  100 (379)
T ss_pred             EEEECCCccccCCCHHHHHHHHHHHHHHhhCCCeEEEE--EECCCCCccCccCHHHHHhhcccchHHHHHHHHHHHHHHH
Confidence            4666655     77888888888888777543223222  233      34554321          0       11234


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |..+++||.+.+.|.|.++|.-|++++|  -|++.+++.|-+=
T Consensus       101 i~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~p  141 (379)
T PLN02874        101 IHTYKKTQVALVHGLVMGGGAGLMVPMK--FRVVTEKTVFATP  141 (379)
T ss_pred             HHhCCCCEEEEecCeEEecHHHHHHhCC--eEEEeCCeEEecc
Confidence            6677899999999999999999999998  7999999887653

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=94.21  E-value=0.32  Score=47.80  Aligned_cols=88  Identities=15%  Similarity=0.167  Sum_probs=65.5

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCC----------CHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG----------SVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGG----------sV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|.++.+.++.+..-+...+.  -.-||...+||||=          -+..+..+++++.....|..+++.|-+++.|++
T Consensus       328 ~G~~~~~~~~K~~r~i~~a~~--~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       328 AGCLDIDSSDKIARFIRFCDA--FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             cCCCCHHHHHHHHHHHHHHHH--cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            577888887777665554333  36899999999995          456777788888888899999999999998766


Q ss_pred             HHhcC--CCCcEEeecCceeEE
Q 027632          198 LLSAG--TKGKYLCFLAWFLLV  217 (221)
Q Consensus       198 IlaAG--dkgkR~AlPnS~~MI  217 (221)
                      .+++.  .....++.|++.+-+
T Consensus       406 am~~~~~~~d~~~a~p~a~~~v  427 (512)
T TIGR01117       406 AMCSKHLGADQVYAWPTAEIAV  427 (512)
T ss_pred             HhccccCCCCEEEEcCCCeEee
Confidence            65531  123689999998754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=94.10  E-value=0.35  Score=48.97  Aligned_cols=86  Identities=15%  Similarity=0.193  Sum_probs=59.2

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe------CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN------SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN------SPGGsV~a----------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.|..++.++..+-|.| +.      |-|+++..                ...++..|..++.||.+.+.
T Consensus        26 l~~~~~~eL~~~l~~~~~d~~vr~VVl-~~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaVn  104 (699)
T TIGR02440        26 LKAEFADQVSEILSQLKRDKSIRGLVL-VSGKPDNFIAGADISMLAACQTAGEAKALAQQGQVLFAELEALPIPVVAAIH  104 (699)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE-EeCCCCceeeccCchhhhccCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            566777777777776665332222222 22      33444432                23466788889999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecC--ceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLA--WFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPn--S~~MIh~  219 (221)
                      |.|.++|.-|++++|  .|++.++  +.|-+-+
T Consensus       105 G~a~GgG~~LaLacD--~ria~~~~~a~fg~pe  135 (699)
T TIGR02440       105 GACLGGGLELALACH--SRVCSDDDKTVLGLPE  135 (699)
T ss_pred             CEeecHHHHHHHhCC--EEEEcCCCCcEEechh
Confidence            999999999999998  7999876  5565544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.07  E-value=0.37  Score=49.01  Aligned_cols=48  Identities=13%  Similarity=-0.005  Sum_probs=42.2

Q ss_pred             HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ..+++.|..++.||.+.+.|.|.+.|.-|++++|  .|++.+++.|-+=+
T Consensus        92 ~~~~~~i~~~pkPvIAai~G~alGGGleLalacD--~ria~~~a~fglPE  139 (714)
T TIGR02437        92 NSIFNKLEDLPVPTVAAINGIALGGGCECVLATD--FRIADDTAKIGLPE  139 (714)
T ss_pred             HHHHHHHHhCCCCEEEEECCeeecHHHHHHHhCC--EEEEeCCCEEecch
Confidence            3577888889999999999999999999999998  89999999886543

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=93.55  E-value=0.24  Score=48.17  Aligned_cols=87  Identities=18%  Similarity=0.209  Sum_probs=64.4

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.|+.+.+.....-+...+..  +-||...+|.||          |-+..|-.+.+++...+.|+.||+.|-+.++|++.
T Consensus       308 G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga~~a  385 (493)
T PF01039_consen  308 GALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGAYYA  385 (493)
T ss_dssp             GEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHHHHH
T ss_pred             ccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcchhh
Confidence            678888777776655555543  469999999999          66788999999999999999999999999988877


Q ss_pred             HhcCC--CCcEEeecCceeEE
Q 027632          199 LSAGT--KGKYLCFLAWFLLV  217 (221)
Q Consensus       199 laAGd--kgkR~AlPnS~~MI  217 (221)
                      +++..  ....+|.|++.+-+
T Consensus       386 m~~~~~~~~~~~Awp~a~~~v  406 (493)
T PF01039_consen  386 MCGRGYGPDFVFAWPTAEIGV  406 (493)
T ss_dssp             TTGGGGTTSEEEEETT-EEES
T ss_pred             hcccccchhhhhhhhcceeee
Confidence            77651  23579999987654

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.31  E-value=0.68  Score=46.93  Aligned_cols=84  Identities=20%  Similarity=0.157  Sum_probs=57.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEE-EEeC-------CCCCHHH----------------HHHHHHHHHhcCCCeEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIM-YLNS-------PGGSVTA----------------GMAIFDTIRHIRPDVSTV  186 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~L-yINS-------PGGsV~a----------------GlaIYDtmr~i~~~V~Tv  186 (221)
                      ++.++...+.+.|..++.+   ++|.. .|-+       -|+++..                ...+++.|..++.||.+.
T Consensus        31 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~~~~~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAa  107 (708)
T PRK11154         31 LKAEFAEQVRAILKQLRED---KELKGVVFISGKPDNFIAGADINMLAACKTAQEAEALARQGQQLFAEIEALPIPVVAA  107 (708)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEecCCCCCcccCcChHHhhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            5666777777776666543   33332 2222       2344321                123677888899999999


Q ss_pred             EcceechHHHHHHhcCCCCcEEeecCc--eeEEee
Q 027632          187 CVGLAASMGAFLLSAGTKGKYLCFLAW--FLLVIF  219 (221)
Q Consensus       187 ~~GlAASmAa~IlaAGdkgkR~AlPnS--~~MIh~  219 (221)
                      +.|.|.+.|.-|++++|  -|++.+++  .|-+.+
T Consensus       108 V~G~a~GgG~~LalacD--~ria~~~a~a~fg~pe  140 (708)
T PRK11154        108 IHGACLGGGLELALACH--YRVCTDDPKTVLGLPE  140 (708)
T ss_pred             ECCeeechHHHHHHhCC--EEEEeCCCCceEeCcc
Confidence            99999999999999998  79999875  565544

>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional

Probab=93.10  E-value=0.48  Score=47.04  Aligned_cols=43  Identities=21%  Similarity=0.040  Sum_probs=36.6

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC--ceeE
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA--WFLL  216 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn--S~~M  216 (221)
                      +.+.|+.+++||.+.+.|.|.++|..|++++|  .|++.++  +.|-
T Consensus       115 l~~~l~~~pkPvIAAVnG~a~GGG~~LALacD--~rIas~~~~a~fg  159 (550)
T PRK08184        115 IEDSSRHSGLKFIAAVNGTCAGGGYELALACD--EIVLVDDRSSAVS  159 (550)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEE
Confidence            45667788999999999999999999999999  7888876  5553

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=93.05  E-value=0.67  Score=47.12  Aligned_cols=87  Identities=14%  Similarity=0.070  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++.+.+.+.+..++.++..+-|.|.=+    |-|+++..                  ...+++.|..+++||.+.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~  110 (715)
T PRK11730         31 LDRATLASLGEALDALEAQSDLKGLLLTSAKDAFIVGADITEFLSLFAAPEEELSQWLHFANSIFNRLEDLPVPTVAAIN  110 (715)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCcEEEEEECCCCccccCcCHHHHhhhccCCHHHHHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            566777777777776665332222222111    23444422                  12345667788999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+=+
T Consensus       111 G~a~GgG~~LAlacD--~ria~~~a~f~~pe  139 (715)
T PRK11730        111 GYALGGGCECVLATD--YRVASPDARIGLPE  139 (715)
T ss_pred             CEeehHHHHHHHhCC--EEEEcCCCEEeCch
Confidence            999999999999999  79999999886533

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=93.05  E-value=0.61  Score=46.36  Aligned_cols=44  Identities=20%  Similarity=0.054  Sum_probs=37.1

Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC--ceeEE
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA--WFLLV  217 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn--S~~MI  217 (221)
                      +++.|+.+++||.+.+.|.|.++|.-|.+++|  -|++.++  +.|-+
T Consensus       111 i~~~i~~~pkPvIAAVnG~a~GGG~~LALacD--~rvAs~~a~a~f~~  156 (546)
T TIGR03222       111 IEDSSRHSGLKFLAAVNGTCAGGGYELALACD--EIMLVDDRSSSVSL  156 (546)
T ss_pred             HHHHHHhCCCCEEEEECCEeehHHHHHHHhCC--EEEEecCCCcEEEc
Confidence            55667788999999999999999999999998  7888875  45543

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>KOG1680 consensus Enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=92.21  E-value=0.48  Score=43.91  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=67.4

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceec
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      .++..++.++...+..++.++..+-|.||=    =|-|.|+.+             -+..++.+.++++||.+.+.|.|-
T Consensus        60 al~~~~m~eL~~A~~~~e~D~s~~viVltG~gksFcsG~Dl~e~~~~~~~~~~~~~~~~~~~~~~~~~KPvIaainG~Al  139 (290)
T KOG1680|consen   60 ALCRATMLELAEAFKDFESDDSVGVIVLTGSGKSFCSGADLKEMKKDEFQDVSDGIFLRVWDLVSRLKKPVIAAINGFAL  139 (290)
T ss_pred             cccHHHHHHHHHHHHHhhccCcccEEEEEcCCCccccccCHHHHhhccccccccccccchhhhhhhcccceeEeeeceee
Confidence            367788999999999999877666555552    123333322             235677888899999999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          193 SMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      ..|.-|.+.+|  =|+|-++|+|++-
T Consensus       140 gGG~ELalmCD--irva~~~Akfg~~  163 (290)
T KOG1680|consen  140 GGGLELALMCD--IRVAGEGAKFGFF  163 (290)
T ss_pred             ccchhhhhhcc--eEeccCCCeeccc
Confidence            99999999999  6999999999863

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.59  E-value=0.93  Score=46.36  Aligned_cols=48  Identities=15%  Similarity=0.059  Sum_probs=40.8

Q ss_pred             HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCc--eeEEee
Q 027632          170 MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAW--FLLVIF  219 (221)
Q Consensus       170 laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS--~~MIh~  219 (221)
                      ..+++.|..++.||.+.+.|.|.++|.-|+++||  .|++.+++  .|-+.+
T Consensus        98 ~~l~~~i~~~~kPvIAav~G~a~GgG~eLALacD--~ria~~~a~a~fglpE  147 (737)
T TIGR02441        98 QEMFERIEKSQKPIVAAISGSCLGGGLELALACH--YRIATKDRKTLLGLPE  147 (737)
T ss_pred             HHHHHHHHhCCCCEEEEECCEeecHHHHHHHhCC--EEEEcCCCCCeEecch
Confidence            3567788889999999999999999999999998  89999874  555544

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=91.58  E-value=1.6  Score=40.00  Aligned_cols=89  Identities=18%  Similarity=0.102  Sum_probs=62.4

Q ss_pred             EEcCccChhHHHHHHHHHhccccc----CCCCceEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEcce--
Q 027632          126 RCGGPVEDDMANIIVAQLLYLDAV----DPNKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--  190 (221)
Q Consensus       126 fL~G~Idd~~A~~IiaqLl~Lds~----d~~kdI~LyINSPGGsV~aGl-------aIYDtmr~i~--~~V~Tv~~Gl--  190 (221)
                      |.+|-+.+.....+...+. +..+    ...-++.+.+.|.|+-+.+|.       .++..+...+  .|+.+++.|-  
T Consensus        70 ~~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSgGaRlqEg~~~L~~~a~i~~~~~~ls~~vP~Isvv~Gp~g  148 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVGALR-LAIEDNRKGQPTAVVLLLDTGGVRLQEANAGLIAIAEIMRAILDARAAVPVIGVIGGRVG  148 (274)
T ss_pred             ccCcCCCHHHHHHHHHHHH-HHHhhhhccCCCCEEEEEcCCCcChhhhHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence            5678888877777755444 3322    113489999999999887654       2333333333  6999999999  


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |++.++++.+.+|  ..++.|++.+.+
T Consensus       149 c~GG~a~~a~l~D--~vim~~~a~i~~  173 (274)
T TIGR03133       149 CFGGMGIAAGLCS--YLIMTEEGRLGL  173 (274)
T ss_pred             cchHHHHHHhcCC--EEEEeCCcEEec
Confidence            7888888888888  678888876543

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=90.20  E-value=1.9  Score=40.08  Aligned_cols=89  Identities=16%  Similarity=0.113  Sum_probs=63.9

Q ss_pred             EEcCccChhHHHHHHHHHhcccccCC----CCceEEEEeCCCCCHHHHH-------HHHHHHHhcC--CCeEEEEcce--
Q 027632          126 RCGGPVEDDMANIIVAQLLYLDAVDP----NKDIIMYLNSPGGSVTAGM-------AIFDTIRHIR--PDVSTVCVGL--  190 (221)
Q Consensus       126 fL~G~Idd~~A~~IiaqLl~Lds~d~----~kdI~LyINSPGGsV~aGl-------aIYDtmr~i~--~~V~Tv~~Gl--  190 (221)
                      |++|-+.+.....+...+. +..+..    -.++.+.+.|.|+-+.+|.       .|+..+..++  .|+.+++.|-  
T Consensus        79 f~GGS~G~~~g~Ki~r~~e-~A~~~~~~~~~~PvV~l~dSGGaRlqEg~~~L~~~a~i~~~~~~ls~~VP~I~vv~G~~g  157 (301)
T PRK07189         79 FMGGSVGEVHGAKLAGALE-LAAEDNRNGIPTAVLLLFETGGVRLQEANAGLAAIAEIMRAIVDLRAAVPVIGLIGGRVG  157 (301)
T ss_pred             ccCcCcCHHHHHHHHHHHH-HHHHhCCCCCCCCEEEEecCCCcCccchHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCC
Confidence            5688888887777765444 333332    2689999999998876543       3444444444  6999999998  


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |++.++++.+.+|  ..++.+++.+.+
T Consensus       158 c~GG~a~~a~l~D--~iIm~~~a~igl  182 (301)
T PRK07189        158 CFGGMGIAAALCS--YLIVSEEGRLGL  182 (301)
T ss_pred             CcHHHHHHHhcCC--EEEEECCcEEec
Confidence            8888888888887  678888876543

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=90.09  E-value=2.7  Score=42.15  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=63.4

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.++....-+...+.  -.=||...+|+||          |.+..+..+.+++.....|..|++.|-|++.|++.
T Consensus       380 g~l~~~~a~Kaarfi~lc~~--~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a  457 (569)
T PLN02820        380 GILFTESALKGAHFIELCAQ--RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG  457 (569)
T ss_pred             CccCHHHHHHHHHHHHHHHh--cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence            55777766665444433333  2578999999999          44566677888888888999999999999998888


Q ss_pred             HhcC--CCCcEEeecCceeE
Q 027632          199 LSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laAG--dkgkR~AlPnS~~M  216 (221)
                      +++.  .....++.|++.+-
T Consensus       458 M~g~~~~~d~~~awp~A~i~  477 (569)
T PLN02820        458 MCGRAYSPNFLFMWPNARIG  477 (569)
T ss_pred             hcCcCCCCCEEEECCCCeEE
Confidence            8743  23467888988763

>PRK05654 acetyl-CoA carboxylase subunit beta; Validated

Probab=87.95  E-value=4.2  Score=37.53  Aligned_cols=88  Identities=10%  Similarity=0.059  Sum_probs=61.6

Q ss_pred             EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHH-------HHHH---HhcCCCeEEEEcceechHH
Q 027632          126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAI-------FDTI---RHIRPDVSTVCVGLAASMG  195 (221)
Q Consensus       126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaI-------YDtm---r~i~~~V~Tv~~GlAASmA  195 (221)
                      |++|-++...++.+...+..-+..  .-|+..+..|+|....+|..-       +..+   .....|..+++.|-+++.+
T Consensus       132 f~gGS~g~~~~eKi~r~~e~A~~~--~lPlV~l~dsgGarmqEgi~sL~~~ak~~~a~~~~~~a~vP~IsVv~gpt~GG~  209 (292)
T PRK05654        132 FMGGSMGSVVGEKIVRAVERAIEE--KCPLVIFSASGGARMQEGLLSLMQMAKTSAALKRLSEAGLPYISVLTDPTTGGV  209 (292)
T ss_pred             cccCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcchhhhhhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCCchHH
Confidence            447778888888886655543332  478999999999887776532       2232   2234788999999999987


Q ss_pred             HHHHhc-CCCCcEEeecCceeEE
Q 027632          196 AFLLSA-GTKGKYLCFLAWFLLV  217 (221)
Q Consensus       196 a~IlaA-GdkgkR~AlPnS~~MI  217 (221)
                      +..++. ||  -.++-|++.+.+
T Consensus       210 aas~a~~~D--~iia~p~A~ig~  230 (292)
T PRK05654        210 SASFAMLGD--IIIAEPKALIGF  230 (292)
T ss_pred             HHHHHHcCC--EEEEecCcEEEe
Confidence            777655 66  578899886543

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=87.70  E-value=3.7  Score=37.76  Aligned_cols=88  Identities=10%  Similarity=0.033  Sum_probs=61.7

Q ss_pred             EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHH-------H---HHhcCCCeEEEEcceechHH
Q 027632          126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFD-------T---IRHIRPDVSTVCVGLAASMG  195 (221)
Q Consensus       126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYD-------t---mr~i~~~V~Tv~~GlAASmA  195 (221)
                      |++|-++...++.+...+..-...  .-|+....+|+|.-..+|.....       .   +.....|..+++.|-+++.+
T Consensus       131 f~gGSmg~~~geKi~r~~e~A~~~--~lPlV~l~dSgGaRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv~gpt~GG~  208 (285)
T TIGR00515       131 FMGGSMGSVVGEKFVRAIEKALED--NCPLIIFSASGGARMQEALLSLMQMAKTSAALAKMSERGLPYISVLTDPTTGGV  208 (285)
T ss_pred             ccCCCccHHHHHHHHHHHHHHHHc--CCCEEEEEcCCCcccccchhHHHhHHHHHHHHHHHHcCCCCEEEEEeCCcchHH
Confidence            346777777788776655543332  56899999999988777653322       2   22234789999999999988


Q ss_pred             HHHHh-cCCCCcEEeecCceeEE
Q 027632          196 AFLLS-AGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       196 a~Ila-AGdkgkR~AlPnS~~MI  217 (221)
                      +..++ .||  -.++-|++.+.+
T Consensus       209 aas~a~~~D--~iia~p~A~ig~  229 (285)
T TIGR00515       209 SASFAMLGD--LNIAEPKALIGF  229 (285)
T ss_pred             HHHHHhCCC--EEEEECCeEEEc
Confidence            77775 676  579999986643

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase

Probab=83.99  E-value=6.9  Score=39.08  Aligned_cols=85  Identities=11%  Similarity=-0.046  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCC--------CCHH-----------HH----HHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG--------GSVT-----------AG----MAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG--------GsV~-----------aG----laIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++...+.+.+..++.+  +.+|.+.|=+-+        +++.           ..    ..+++.|+.++.||.+.+
T Consensus       295 l~~~~~~~L~~a~~~~~~~--d~~vr~vVl~g~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpviAav  372 (546)
T TIGR03222       295 WPLKLARELDDAILHLRTN--ELDIGLWVFRTQGDAELVLAADALLEAHKDHWFVRETIGYLRRTLARLDVSSRSLFALI  372 (546)
T ss_pred             CCHHHHHHHHHHHHHHhhC--CCCeEEEEEEcCCCCceecCcCccccccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            6677888888888877643  245555543223        3331           10    125667888899999999


Q ss_pred             -cceechHH-HHHHhcCCCCcEEe-------ecCceeEEee
Q 027632          188 -VGLAASMG-AFLLSAGTKGKYLC-------FLAWFLLVIF  219 (221)
Q Consensus       188 -~GlAASmA-a~IlaAGdkgkR~A-------lPnS~~MIh~  219 (221)
                       .|.|...| .-|++++|  -|++       .+++.|.+=+
T Consensus       373 ~~G~a~GgG~~eLalacD--~~ia~~~~~~~~~~a~f~~~e  411 (546)
T TIGR03222       373 EPGSCFAGTLAELAFAAD--RSYMLAFPDNNDPEPAITLSE  411 (546)
T ss_pred             CCCeEeHHHHHHHHHhCc--eeeecCCCCCCCCCCEEeCCc
Confidence             79999999 99999998  7999       7898886544

In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.

>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins

Probab=83.67  E-value=4.1  Score=36.80  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=57.5

Q ss_pred             cCccChh----HHHHHHHHHhcccccCCCCceEEEEeCCC---CCHHHHHHHHH----------HHHhcCCCeEEEEcce
Q 027632          128 GGPVEDD----MANIIVAQLLYLDAVDPNKDIIMYLNSPG---GSVTAGMAIFD----------TIRHIRPDVSTVCVGL  190 (221)
Q Consensus       128 ~G~Idd~----~A~~IiaqLl~Lds~d~~kdI~LyINSPG---GsV~aGlaIYD----------tmr~i~~~V~Tv~~Gl  190 (221)
                      .++|.=+    .|..+.+.+    ...+..+|.+.|.+||   |--.+-+.|+.          .-|....||.+++.|-
T Consensus        40 ~~~vGl~ea~~lA~~V~~~i----~~~~krpIv~lVD~~sQa~grreEllGi~~alAhla~a~a~AR~~GHpvI~Lv~G~  115 (234)
T PF06833_consen   40 HGEVGLEEAWALAKAVLDTI----RSGPKRPIVALVDVPSQAYGRREELLGINQALAHLAKAYALARLAGHPVIGLVYGK  115 (234)
T ss_pred             CCcccHHHHHHHHHHHHHHH----hcCCCCCEEEEEeCCccccchHHHHhhHHHHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence            4555543    344444444    3466899999999999   44455555544          4455557999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|.| ||..+-..++-+|+|  -.|||-
T Consensus       116 A~SGa-FLA~GlqA~rl~AL~--ga~i~v  141 (234)
T PF06833_consen  116 AMSGA-FLAHGLQANRLIALP--GAMIHV  141 (234)
T ss_pred             cccHH-HHHHHHHhcchhcCC--CCeeec
Confidence            99966 566554445789999  566664

Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=81.97  E-value=1.5  Score=41.14  Aligned_cols=64  Identities=20%  Similarity=0.343  Sum_probs=50.5

Q ss_pred             CCceEEEEeCCCCCH-------HHHHHHHHHHH---hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          152 NKDIIMYLNSPGGSV-------TAGMAIFDTIR---HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       152 ~kdI~LyINSPGGsV-------~aGlaIYDtmr---~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .-||..+|++||-..       ..+.+|-..|.   .++.||.++++|--.|.|++-+.-||  +-+++.||++=+
T Consensus       150 ~lPiitfIDT~GAypG~~AEErGQ~eAIA~nL~em~~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySV  223 (317)
T COG0825         150 GLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSV  223 (317)
T ss_pred             CCCEEEEecCCCCCCCcchhhcccHHHHHHHHHHHhCCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeee
Confidence            579999999999543       33455654444   45689999999999999999999998  568888988744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	221
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		3e-31
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		3e-31
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		3e-31
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		4e-31
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		8e-31
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		1e-30
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		2e-30
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		9e-30
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		9e-30
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		9e-30
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		1e-29
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		9e-28
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		2e-27
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		3e-24
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		6e-22
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		6e-22
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		8e-22
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		8e-22
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		3e-21
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		2e-19
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		3e-17
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		6e-09
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		2e-08

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 79/97 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++ I+PDVST+C+G AASMGAFLL+AG KGK  C 
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCL 114

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 79/97 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++ I+PDVST+C+G AASMGAFLL+AG KGK  C 
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCL 114

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score =  131 bits (329), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 79/97 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 32  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 91
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++ I+PDVST+C+G AASMGAFLL+AG KGK  C 
Sbjct: 92  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCL 128

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score =  131 bits (329), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 79/97 (81%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIY 77
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           DT++ I+PDVST+C+G AASMGAFLL+AG KGK  C 
Sbjct: 78  DTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCL 114

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 78/100 (78%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 18  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 77
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGK    
Sbjct: 78  AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFAL 117

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score =  129 bits (325), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/100 (58%), Positives = 78/100 (78%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 16  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DTI+HI+PDV T+C+G+AASMG+FLL+AG KGK    
Sbjct: 76  AIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFAL 115

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 57/100 (57%), Positives = 78/100 (78%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG 
Sbjct: 16  RAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGF 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DTI+HI+PDV T+C+G+AA+MG+FLL+AG KGK    
Sbjct: 76  AIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFAL 115

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 16  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 75
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGK
Sbjct: 76  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGK 111

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGK
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGK 110

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score =  126 bits (317), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGK
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGK 110

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score =  126 bits (316), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 79/96 (82%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII  G  ++D++AN IV+QLL+L A DP K+I +Y+NSPGGS+TAGM
Sbjct: 15  RAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPGGSITAGM 74
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT++ I+P VST+C+G+AASMGAFLL+AG KGK
Sbjct: 75  AIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGK 110

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score =  119 bits (299), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 75/96 (78%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17  RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +I+DT+  IRPDVST+C+G AASMGAFLLS G KGK
Sbjct: 77  SIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGK 112

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score =  118 bits (296), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 54/96 (56%), Positives = 75/96 (78%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   G + D +A+ IVAQLL+L+A DP KDI +Y+NSPGG +T+G+
Sbjct: 17  RSYDIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPGGVITSGL 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +I+DT+  IRPDVST+C+G AA+MGAFLLS G KGK
Sbjct: 77  SIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGK 112

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score =  108 bits (269), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/96 (53%), Positives = 68/96 (70%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPVED+ AN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+
Sbjct: 34  RSYDIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL 93
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI DT   I+ DV T+  G AAS G  + S+G KGK
Sbjct: 94  AIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGK 129

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DT+     D++T  +G+AASMG FLL+AGTKGK
Sbjct: 79  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGK 111

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score =  100 bits (249), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 19  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 78
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DT+     D++T  +G+AASMG FLL+AGTKGK
Sbjct: 79  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGK 111

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 55/115 (47%), Positives = 78/115 (67%), Gaps = 7/115 (6%)
Query: 92  IPTYAQGEQGGGPPPMLLGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDP 151
           +PT  +   GG        R  ++ S+L + RI+   G V D  AN+++AQLL+L++ DP
Sbjct: 7   VPTVIEKTAGGE-------RAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDP 59
Query: 152 NKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +KDI  Y+NSPGG VTAG  ++DT + I+PDVST+C+GLAAS G+ LL+ G KGK
Sbjct: 60  DKDIYFYINSPGGXVTAGXGVYDTXQFIKPDVSTICIGLAASXGSLLLAGGAKGK 114

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score =  100 bits (248), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 68/93 (73%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 20  SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 79
Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DT+     D++T  +G+AASMG FLL+AGTKGK
Sbjct: 80  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGK 112

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 70/95 (73%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+
Sbjct: 71  RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL 130
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
           AI+DT+++I   + T CVG AASMG+ LL+AGT G
Sbjct: 131 AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 165

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 72/100 (72%)
Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + R+I   G VED  AN+ +AQ L+L++ +PNKDI +Y+NSPGG+VT+  
Sbjct: 17  RAYDIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPGGAVTSAX 76
Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF 210
           AI+DT + ++PDV T+C+G AAS GA LL+ G KGK  C 
Sbjct: 77  AIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCL 116

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 84.7 bits (208), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 58/88 (65%), Gaps = 1/88 (1%)
Query: 119 LFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRH 178
            F+ RII     +    A+ +++QLLYLD ++ N DI +Y+NSPGGS+  G+AI D   +
Sbjct: 36  FFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAILDIFNY 94
Query: 179 IRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           I+ D+ T+  GL ASM + +L++G KGK
Sbjct: 95  IKSDIQTISFGLVASMASVILASGKKGK 122

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG---------- 163
           N+ S L   RII    P+   ++  I++QLLYL+     K I +Y+NS G          
Sbjct: 34  NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93
Query: 164 GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
             +T  ++I D I +I  DV T C+G A  +   L S+G KG
Sbjct: 94  NGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKG 135

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSV 166
           S L   RII    P+   ++  I++QLLYL+     K I +Y+NS G            +
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 167 TAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
           T  ++I D I +I  DV T C+G A  +   L S+G KG
Sbjct: 83  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKG 121

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	221
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	1e-59
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	1e-57
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	4e-57
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	5e-57
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	5e-57
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	1e-56
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	2e-54
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	3e-17

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  185 bits (472), Expect = 1e-59
 Identities = 50/95 (52%), Positives = 68/95 (71%)

Query: 112 FQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA 171
             +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMA
Sbjct: 17  TDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMA 76

Query: 172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           I+DT+     D++T  +G+AASMG FLL+AGTKGK
Sbjct: 77  IYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGK 111

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  180 bits (458), Expect = 1e-57
 Identities = 57/90 (63%), Positives = 75/90 (83%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII  G  ++D++AN IV+QLL+L A D  KDI +Y+NSPGGSVTAG AI+DTI
Sbjct: 22  SRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTI 81

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +HI+PDV T+C+G+AASMG+FLL+AG KGK
Sbjct: 82  QHIKPDVQTICIGMAASMGSFLLAAGAKGK 111

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  179 bits (456), Expect = 4e-57
 Identities = 38/96 (39%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
             ++V    F+ RII     +    A+ +++QLLYLD ++   DI +Y+NSPGGS+  G+
Sbjct: 28  MKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGL 86

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI D   +I+ D+ T+  GL ASM + +L++G KGK
Sbjct: 87  AILDIFNYIKSDIQTISFGLVASMASVILASGKKGK 122

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  178 bits (454), Expect = 5e-57
 Identities = 52/90 (57%), Positives = 72/90 (80%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RI+   G V D  AN+++AQLL+L++ DP+KDI  Y+NSPGG VTAGM ++DT+
Sbjct: 25  SRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTM 84

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           + I+PDVST+C+GLAASMG+ LL+ G KGK
Sbjct: 85  QFIKPDVSTICIGLAASMGSLLLAGGAKGK 114

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  178 bits (454), Expect = 5e-57
 Identities = 57/90 (63%), Positives = 76/90 (84%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM+I+DT+
Sbjct: 21  SRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTM 80

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           + I+PDVST+C+G AASMGAFLL+AG KGK
Sbjct: 81  QFIKPDVSTICMGQAASMGAFLLTAGAKGK 110

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  178 bits (453), Expect = 1e-56
 Identities = 52/90 (57%), Positives = 70/90 (77%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RII   GPVED+MAN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+AI DT+
Sbjct: 40  SRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTM 99

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
             I+ DV T+ +G+AASMG  + S+G KGK
Sbjct: 100 NFIKADVQTIVMGMAASMGTVIASSGAKGK 129

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  174 bits (443), Expect = 2e-54
 Identities = 46/90 (51%), Positives = 67/90 (74%)

Query: 117 SQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTI 176
           S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+AI+DT+
Sbjct: 77  SRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTM 136

Query: 177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           ++I   + T CVG AASMG+ LL+AGT G 
Sbjct: 137 QYILNPICTWCVGQAASMGSLLLAAGTPGM 166

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A Length = 230

 Score = 76.6 bits (188), Expect = 3e-17
 Identities = 17/85 (20%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPD 182
            + +  G +     +     +   +  D  + II+ L++PGG   A M I   I+  +  
Sbjct: 11  YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIP 69

Query: 183 VSTVCV---GLAASMGAFLLSAGTK 204
           V          AAS G ++      
Sbjct: 70  VIIYVYPPGASAASAGTYIALGSHL 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	221
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	99.97
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	99.97
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	99.97
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	99.97
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.77
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.43
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.28
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.16
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	97.62
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	97.55
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	97.54
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	97.48
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	97.47
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	97.46
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	97.33
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	97.32
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	97.3
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	97.3
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	97.28
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	97.27
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	97.27
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	97.26
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	97.15
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	97.07
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	97.06
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	97.06
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	97.01
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	96.97
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	96.96
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	96.95
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	96.93
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	96.88
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	96.88
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	96.85
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	96.84
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	96.81
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	96.79
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	96.77
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	96.77
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	96.74
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	96.69
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	96.67
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	96.67
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	96.62
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	96.57
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	96.57
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	96.56
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	96.53
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	96.51
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	96.48
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	96.42
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	96.42
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	96.41
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	96.41
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	96.38
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	96.37
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	96.36
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	96.36
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	96.31
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	96.3
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	96.27
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	96.24
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	96.22
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	96.21
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	96.16
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	96.13
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	96.09
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	96.06
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	96.05
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	96.04
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	96.02
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	95.9
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	95.88
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	95.86
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	95.82
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	95.79
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	95.76
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	95.74
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	95.69
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	95.66
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	95.62
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	95.56
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	95.43
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	95.42
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	95.41
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	95.36
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	95.3
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	95.25
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	95.05
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	94.83
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	94.77
3qxi_A	265	Enoyl-COA hydratase ECHA1; structural genomics, se	94.69
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	94.68
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	94.33
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	94.03
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	93.76
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	93.63
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	92.64
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	92.53
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	91.6

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=7.3e-39  Score=275.48  Aligned_cols=111  Identities=31%  Similarity=0.435  Sum_probs=103.9

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHI  179 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i  179 (221)
                      ++|+||+++||++|||||+|+|||++++.|++||++|+.++++|+|+|||||||          |+|++|++|||+|+++
T Consensus        16 ~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~m~~~   95 (205)
T 4gm2_A           16 NLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDVINYI   95 (205)
T ss_dssp             ------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHHHHHS
T ss_pred             CCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHHHHhc
Confidence            678899999999999999999999999999999999999999999999999999          9999999999999999


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++||+|+|.|+|||||++||+||+||||+++|||.+|||..
T Consensus        96 ~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP  136 (205)
T 4gm2_A           96 SSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQS  136 (205)
T ss_dssp             SSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCC
T ss_pred             CCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecC
Confidence            99999999999999999999999999999999999999975

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=4.7e-34  Score=243.82  Aligned_cols=111  Identities=48%  Similarity=0.842  Sum_probs=107.4

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |+.+|++++||++|||||+|+|++++++.++++|++|+.+++.++|.||||||||+|++|++|||+|+.++.||+|+|.|
T Consensus        18 ~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpGG~v~~~~~I~~~i~~~~~~v~t~~~G   97 (201)
T 3p2l_A           18 ERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGMVTAGMGVYDTMQFIKPDVSTICIG   97 (201)
T ss_dssp             -CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             CcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence            56679999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|++|||+++||+.+|||..
T Consensus        98 ~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p  128 (201)
T 3p2l_A           98 LAASMGSLLLAGGAKGKRYSLPSSQIMIHQP  128 (201)
T ss_dssp             EEETHHHHHHHTSSTTCEEECTTCEEEECCC
T ss_pred             EehhHHHHHHHcCccCCEEEcCCCeEEEecc
Confidence            9999999999999999999999999999975

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=1.2e-33  Score=252.58  Aligned_cols=111  Identities=42%  Similarity=0.687  Sum_probs=106.1

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |+|+|++++||++|||||+|+|++++++.++++|++|+.+++.|+|.||||||||+|++|++|||+|+++++||+|+|.|
T Consensus        70 ~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPGGsV~ag~aIyd~I~~~k~pV~t~v~G  149 (277)
T 1tg6_A           70 ERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVG  149 (277)
T ss_dssp             ---CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             cccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            46889999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|+++||+++||+++|||..
T Consensus       150 ~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP  180 (277)
T 1tg6_A          150 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQP  180 (277)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred             EeHHHHHHHHHCCCcCCEEEecCCEEEEecc
Confidence            9999999999999999999999999999975

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=1.2e-33  Score=241.61  Aligned_cols=111  Identities=52%  Similarity=0.876  Sum_probs=107.2

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |+.+||+++||++|||||+|+|++.+++.++++|++++.+++.++|.||||||||+|++|++|||+|+.+++||+|+|.|
T Consensus        15 ~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~~~~~I~~~i~~~~~~V~t~~~G   94 (203)
T 3qwd_A           15 ERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIG   94 (203)
T ss_dssp             -CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             CcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCcEEEEee
Confidence            56679999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|++|+|+++||+.+|||..
T Consensus        95 ~AaSag~~i~~ag~~g~r~~~p~a~imiHqP  125 (203)
T 3qwd_A           95 MAASMGSFLLAAGAKGKRFALPNAEVMIHQP  125 (203)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred             eehhHHHHHHHcCCcCeEEEcCCceEEEecc
Confidence            9999999999999999999999999999974

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=99.97  E-value=3.8e-32  Score=228.28  Aligned_cols=111  Identities=53%  Similarity=0.899  Sum_probs=107.4

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |++.|++++|+++|||||+|+|++.+++.++++|++++.+++.++|.|+||||||++++|++|||+|+.++.||+|+|.|
T Consensus        14 ~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g   93 (193)
T 1yg6_A           14 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMG   93 (193)
T ss_dssp             CCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEee
Confidence            46779999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||+|++|+++|+++||++.||+.+|||..
T Consensus        94 ~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p  124 (193)
T 1yg6_A           94 QAASMGAFLLTAGAKGKRFCLPNSRVMIHQP  124 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCC
T ss_pred             eHHHHHHHHHHCCCcCcEEEecCcEEEEEec
Confidence            9999999999999999999999999999974

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=99.97  E-value=1e-31  Score=230.77  Aligned_cols=111  Identities=34%  Similarity=0.587  Sum_probs=107.5

Q ss_pred             ccchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEc
Q 027632          109 LGRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       109 ~e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~  188 (221)
                      .+.|+|++++|+++|||||+|+|++.+++.++++|++++.+++ ++|.||||||||+|++|++|||+|+.++.||+|+|.
T Consensus        26 ~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPGGsv~a~~~I~~~i~~~~~pV~t~v~  104 (215)
T 2f6i_A           26 KDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISF  104 (215)
T ss_dssp             SCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEE
T ss_pred             ccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEEe
Confidence            4678999999999999999999999999999999999998887 999999999999999999999999999999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |+|||||++|+++|++|||++.||+++|||..
T Consensus       105 g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p  136 (215)
T 2f6i_A          105 GLVASMASVILASGKKGKRKSLPNCRIMIHQP  136 (215)
T ss_dssp             EEECHHHHHHHHTSCTTCEEECTTCEEESSCT
T ss_pred             eEhHhHHHHHHHcCCcccEEEcCCCEEEEecc
Confidence            99999999999999999999999999999974

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=99.97  E-value=7.2e-32  Score=231.43  Aligned_cols=111  Identities=48%  Similarity=0.757  Sum_probs=107.1

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |+|+|++++|+++|||||+|+|++++++.|+++|++++.+++.|+|.|+||||||++++|++|||+|+.+++||.|+|.|
T Consensus        33 ~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPGG~v~ag~~I~~~i~~~~~pV~t~v~G  112 (218)
T 1y7o_A           33 ERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMG  112 (218)
T ss_dssp             --CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcCCCHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            57889999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||+|++|+++|++|||++.||+++|+|++
T Consensus       113 ~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p  143 (218)
T 1y7o_A          113 MAASMGTVIASSGAKGKRFMLPNAEYMIHQP  143 (218)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCC
T ss_pred             EeHHHHHHHHHcCCcCcEEEcCCcEEEEecc
Confidence            9999999999999999999999999999986

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=99.97  E-value=8.7e-31  Score=222.78  Aligned_cols=111  Identities=46%  Similarity=0.669  Sum_probs=108.1

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++|.|++++|+++|||+|+|+|++.+++.++++|++++.+++.++|.|+||||||++++|++|||+|+.++.||+|+|.|
T Consensus        15 ~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPGG~v~a~~~I~~~i~~~~~pV~~~v~g   94 (208)
T 2cby_A           15 SLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMG   94 (208)
T ss_dssp             CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEE
T ss_pred             cchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCCCCHHHHHHHHHHHHhcCCCEEEEECc
Confidence            67999999999999999999999999999999999999888899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +|||||++|+++|+++||++.|++.+|||..
T Consensus        95 ~AaS~g~~Ia~agd~~~~~a~p~a~igih~p  125 (208)
T 2cby_A           95 MAASMGEFLLAAGTKGKRYALPHARILMHQP  125 (208)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEECCCC
T ss_pred             EeHHHHHHHHhCCCcCCEEEcCCcEEEEecc
Confidence            9999999999999999999999999999975

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.77  E-value=1.2e-18  Score=151.37  Aligned_cols=95  Identities=18%  Similarity=0.162  Sum_probs=89.9

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEE---cceechHHHHHH
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVC---VGLAASMGAFLL  199 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~---~GlAASmAa~Il  199 (221)
                      .+|+|.|.|++++++.+.++|..++. +..+.|.|+||||||+++++..||++|+.+++||.++|   .|.|+|+|++|+
T Consensus        11 ~vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspGG~v~~~~~i~~~i~~~~~PVia~v~p~~G~AasaG~~ia   89 (230)
T 3viv_A           11 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIA   89 (230)
T ss_dssp             EEEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSCEEHHHHHHHHHHHHTCSSCEEEEECSTTCEEETHHHHHH
T ss_pred             EEEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCCcCHHHHHHHHHHHHhCCCCEEEEEecCCCEEhHHHHHHH
Confidence            46899999999999999999998875 45899999999999999999999999999999999999   999999999999


Q ss_pred             hcCCCCcEEeecCceeEEeec
Q 027632          200 SAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       200 aAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++||  +|++.|++.+++|++
T Consensus        90 ~a~d--~~~a~p~a~ig~~~p  108 (230)
T 3viv_A           90 LGSH--LIAMAPGTSIGACRP  108 (230)
T ss_dssp             HTSS--EEEECTTCEEECCCE
T ss_pred             HhcC--ceeECCCCEEEeccc
Confidence            9999  799999999999975

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.43  E-value=1.1e-13  Score=133.40  Aligned_cols=101  Identities=16%  Similarity=0.039  Sum_probs=77.6

Q ss_pred             HHHHhhcCCcEEEEcCcc---ChhHHHHHHHHHhcccccCCCCceEEEEeCCC-CCHHHHHHHHHHHHhcC---CCeEEE
Q 027632          114 NVLSQLFQHRIIRCGGPV---EDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-GSVTAGMAIFDTIRHIR---PDVSTV  186 (221)
Q Consensus       114 di~s~L~~~RIIfL~G~I---dd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-GsV~aGlaIYDtmr~i~---~~V~Tv  186 (221)
                      |.+++++++   |+++++   ++..++.|+++|..+..+++.|.|.|+||||| |++.++..|||+|+.++   ++|+++
T Consensus        50 ~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGgG~v~~~~~I~~~i~~~k~~gkpvva~  126 (593)
T 3bf0_A           50 QRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAV  126 (593)
T ss_dssp             --------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEECCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCCCcHHHHHHHHHHHHHHHhcCCeEEEE
Confidence            466777766   677765   46789999999999988888999999999999 99999999999999995   678888


Q ss_pred             EcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          187 CVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       187 ~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +. .|+|+|++|+++++  ++++.|++.+|+|-+
T Consensus       127 ~~-~aas~~y~lAsaad--~i~~~P~~~vg~~g~  157 (593)
T 3bf0_A          127 GE-NYSQGQYYLASFAN--KIWLSPQGVVDLHGF  157 (593)
T ss_dssp             ES-CEEHHHHHHHTTSS--EEEECTTCCEECCCC
T ss_pred             Ec-cchhHHHHHHHhCC--EEEECCCceEEEecc
Confidence            65 48888998888886  899999999999976

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.28  E-value=1e-11  Score=106.97  Aligned_cols=95  Identities=21%  Similarity=0.297  Sum_probs=84.2

Q ss_pred             EEEEcCccChh------------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc----CCCeEEEE
Q 027632          124 IIRCGGPVEDD------------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI----RPDVSTVC  187 (221)
Q Consensus       124 IIfL~G~Idd~------------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i----~~~V~Tv~  187 (221)
                      +|.+.|.|.+.            ..+.+.++|..++.++..+.|.|.+|||||++.++..|++.|+.+    ++||.+.+
T Consensus         7 vi~i~G~I~~~~~~~~~~~~~~~~~~~l~~~l~~a~~d~~v~~ivL~~~s~Gg~~~~~~~i~~~l~~~~~~~~kPVia~v   86 (240)
T 3rst_A            7 VLEVSGTIQDNGDSSSLLGADGYNHRTFLKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSM   86 (240)
T ss_dssp             EEEEESCBCCC---------CCCCHHHHHHHHHHHHHCTTEEEEEEEEEECCBCHHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             EEEEEEEEcCCCCcCcccccCCcCHHHHHHHHHHHHhCCCcEEEEEEecCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEE
Confidence            57778888764            357888999988887778999999999999999999999999874    67999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.|+|+|++|+++||  +|++.|++.+.+|-|
T Consensus        87 ~g~a~~gG~~lA~a~D--~i~a~~~a~~g~~Gv  117 (240)
T 3rst_A           87 GSMAASGGYYISTAAD--KIFATPETLTGSLGV  117 (240)
T ss_dssp             EEEEETHHHHHHTTSS--EEEECTTCEEECCCC
T ss_pred             CCeehHhHHHHHHhCC--eeEECCCCeEeccce
Confidence            9999999999999998  899999999998854

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.16  E-value=1.8e-11  Score=117.96  Aligned_cols=94  Identities=24%  Similarity=0.226  Sum_probs=83.7

Q ss_pred             EEEEcCccChh-------HHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhc---CCCeEEEEcceech
Q 027632          124 IIRCGGPVEDD-------MANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHI---RPDVSTVCVGLAAS  193 (221)
Q Consensus       124 IIfL~G~Idd~-------~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i---~~~V~Tv~~GlAAS  193 (221)
                      +|.|.|+|.+.       +.+.+.++|..++.++..+.|.|++|||||++.++..|++.|+.+   +.||.+.+.|.|+|
T Consensus       305 vI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spGG~~~~~~~i~~~i~~l~~~~kPVia~v~g~Aas  384 (593)
T 3bf0_A          305 VVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAAS  384 (593)
T ss_dssp             EEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEEECHHHHHHHHHHHHHHHHTTCCEEEEEEEEEET
T ss_pred             EEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCEEEEECCChHH
Confidence            68899998654       378899999998887778999999999999999999999988875   47999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEee
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +|++|+++||  +|+|.|++++..+.
T Consensus       385 gG~~iA~aaD--~iva~p~a~~Gsig  408 (593)
T 3bf0_A          385 GGYWISTPAN--YIVANPSTLTGSIG  408 (593)
T ss_dssp             HHHHTTTTCS--EEEECTTCEEECCC
T ss_pred             HHHHHHHhCC--EEEECCCCEeecce
Confidence            9999999998  89999999997654

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=97.62  E-value=0.00039  Score=59.68  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=75.4

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH--------------HHHHHHHHHhcC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------GMAIFDTIRHIR  180 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a--------------GlaIYDtmr~i~  180 (221)
                      +|.|+.+     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++..              ...+++.|..++
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   94 (257)
T 2ej5_A           15 WLTLNRPDQLNAFTEQMNAEVTKALKQAGADPNVRCVVITGAGRAFCAGEDLSGVTEEMDHGDVLRSRYAPMMKALHHLE   94 (257)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCC-------CHHHHHHHTHHHHHHHHHHCC
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCcCHHHHhhccchhHHHHHHHHHHHHHHHhCC
Confidence            4566544     788888999999988887666677777665    67888632              234566788889


Q ss_pred             CCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          181 PDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       181 ~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        95 kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  132 (257)
T 2ej5_A           95 KPVVAAVNGAAAGAGMSLALACD--FRLLSEKASFAPAFI  132 (257)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             CCEEEEECccccchhHHHHHhCC--EEEEcCCCEEeCccc
Confidence            99999999999999999999999  899999999876554

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=97.55  E-value=0.00068  Score=58.17  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=77.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH-------------HHHHHHHhcCC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------AIFDTIRHIRP  181 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl-------------aIYDtmr~i~~  181 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..-.             .+++.|..++.
T Consensus        17 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k   96 (258)
T 2pbp_A           17 IIELARPDVLNALSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAGADIQEMAKDDPIRLEWLNQFADWDRLSIVKT   96 (258)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCCCHHHHHTCCHHHHHHHCTTHHHHHHHTCCS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHhCCC
Confidence            4566544     788889999999988887666677777766    8899985411             45778888999


Q ss_pred             CeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          182 DVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       182 ~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus        97 PvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  133 (258)
T 2pbp_A           97 PMIAAVNGLALGGGFELALSCD--LIVASSAAEFGFPEV  133 (258)
T ss_dssp             CEEEEECSEEETHHHHHHHTSS--EEEEETTCEEECGGG
T ss_pred             CEEEEEcCEEEhHHHHHHHhCC--EEEEcCCCEEECccc
Confidence            9999999999999999999999  899999998876543

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=97.54  E-value=0.00042  Score=59.85  Aligned_cols=94  Identities=14%  Similarity=0.096  Sum_probs=77.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHHHH-------------------HHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAGM-------------------AIFD  174 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~aGl-------------------aIYD  174 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+     |.|+++..-.                   .++.
T Consensus        16 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (263)
T 3lke_A           16 YITLDYPEKKNGLDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSGPRLEDLLICASDQSDVRLREVLHVLNHCVL   95 (263)
T ss_dssp             EEEECCGGGTTBCCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECBSCHHHHHHHHHCSSSHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecCcCHHHHHhhcccCCHHHHHHHHHHHHHHHH
Confidence            4666665     888899999999998887776777777776     8888875432                   3567


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        96 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  138 (263)
T 3lke_A           96 EIFTSPKVTVALINGYAYGGGFNMMLACD--RRIALRRAKFLENF  138 (263)
T ss_dssp             HHHTCSSEEEEEECSEEETHHHHGGGGSS--EEEEETTCEEECCH
T ss_pred             HHHhCCCCEEEEECCEeeHHHHHHHHHCC--EEEEcCCCEEeCch
Confidence            78888999999999999999999999998  89999999987654

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.48  E-value=0.00098  Score=56.94  Aligned_cols=88  Identities=19%  Similarity=0.093  Sum_probs=70.9

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------------HHHHHHHHHhcCCCeEEEE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------------GlaIYDtmr~i~~~V~Tv~  187 (221)
                      .++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++..                  ...+++.|..++.||.+.+
T Consensus        22 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  101 (253)
T 1uiy_A           22 PLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV  101 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3778888899998888887666677777666    78888742                  1234556777889999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus       102 ~G~a~GgG~~lal~cD--~~ia~~~a~f~~pe  131 (253)
T 1uiy_A          102 NGPAVAGGAGLALACD--LVVMDEEARLGYTE  131 (253)
T ss_dssp             CSCEETHHHHHHHTSS--EEEEETTCEEECCH
T ss_pred             CCeeeHHHHHHHHhCC--EEEEcCCcEEeCcc
Confidence            9999999999999999  89999999886544

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=97.47  E-value=9.4e-05  Score=67.44  Aligned_cols=87  Identities=16%  Similarity=0.180  Sum_probs=67.5

Q ss_pred             EEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH----------HHHHHHHHhcCCCeEEEEcceechHH
Q 027632          126 RCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG----------MAIFDTIRHIRPDVSTVCVGLAASMG  195 (221)
Q Consensus       126 fL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG----------laIYDtmr~i~~~V~Tv~~GlAASmA  195 (221)
                      +.+|.++++....+...+..-+..  .-||..++||||..+..+          ..+...|...+.|+.+++.|-|++.|
T Consensus       150 ~~~G~~~~~~~~Ka~r~~~~A~~~--~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGG  227 (339)
T 2f9y_A          150 RNFGMPAPEGYRKALRLMQMAERF--KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGG  227 (339)
T ss_dssp             TGGGCCCHHHHHHHHHHHHHHHHT--TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHH
T ss_pred             hhcCCCCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcCcHH
Confidence            345667777777665555433332  579999999999876543          34566788888999999999999999


Q ss_pred             HHHHhcCCCCcEEeecCceeE
Q 027632          196 AFLLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       196 a~IlaAGdkgkR~AlPnS~~M  216 (221)
                      +.++++||  .+++.|++.+-
T Consensus       228 a~~~~~~D--~via~p~A~~~  246 (339)
T 2f9y_A          228 ALAIGVGD--KVNMLQYSTYS  246 (339)
T ss_dssp             HHTTCCCS--EEEECTTCEEE
T ss_pred             HHHHhccC--eeeecCCCEEE
Confidence            99999987  79999999864

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=97.46  E-value=0.00092  Score=57.01  Aligned_cols=95  Identities=15%  Similarity=0.204  Sum_probs=72.5

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE-e----CCCCCHHH----------------HHHHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-N----SPGGSVTA----------------GMAIFDTIR  177 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-N----SPGGsV~a----------------GlaIYDtmr  177 (221)
                      +|.|+.+     ++.++.+.+.+.|..++.++..+-|.|.= +    |.|+++..                ...+++.|.
T Consensus        12 ~itlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~   91 (250)
T 2a7k_A           12 VITLDHPNKHNPFSRTLETSVKDALARANADDSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVL   91 (250)
T ss_dssp             EEEECCSSTTCBCCHHHHHHHHHHHHHHHHCTTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCCccCCcCHHHHhhcCchhhHHHHHHHHHHHHHHHH
Confidence            4556544     78888899999888888765556555554 2    45777632                224566778


Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        92 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  132 (250)
T 2a7k_A           92 NVNKPTIAAVDGYAIGMGFQFALMFD--QRLMASTANFVMPEL  132 (250)
T ss_dssp             TCCSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             cCCCCEEEEECCeEeHHHHHHHHhCC--EEEEcCCCEEeCccc
Confidence            88999999999999999999999999  899999998876543

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=97.33  E-value=0.00053  Score=62.06  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=67.2

Q ss_pred             EcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH----------HHHHHHHHhcCCCeEEEEcceechHHH
Q 027632          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG----------MAIFDTIRHIRPDVSTVCVGLAASMGA  196 (221)
Q Consensus       127 L~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG----------laIYDtmr~i~~~V~Tv~~GlAASmAa  196 (221)
                      .+|.++.+....+...+..-+..  .-||..++||||..+..+          ..+...|...+.|+.+++.|-|++.|+
T Consensus       137 ~~G~~~~~~~~Ka~r~~~~A~~~--~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a~GGGa  214 (327)
T 2f9i_A          137 NFGMAHPEGYRKALRLMKQAEKF--NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGA  214 (327)
T ss_dssp             GGGCCCHHHHHHHHHHHHHHHHT--TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEBHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHHhhc--CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCcChHHH
Confidence            45667877777665555433332  579999999999876544          345667888889999999999999999


Q ss_pred             HHHhcCCCCcEEeecCceeE
Q 027632          197 FLLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       197 ~IlaAGdkgkR~AlPnS~~M  216 (221)
                      .++++||  .+++.|++.+-
T Consensus       215 ~~~~~~D--~via~~~A~~~  232 (327)
T 2f9i_A          215 LGIGIAN--KVLMLENSTYS  232 (327)
T ss_dssp             HTTCCCS--EEEEETTCBCB
T ss_pred             HHHHCCC--EEEEcCCceEe
Confidence            9999987  79999999864

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=97.32  E-value=0.00082  Score=57.83  Aligned_cols=94  Identities=11%  Similarity=0.113  Sum_probs=73.8

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH---------------HHHHHHHHHhc
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA---------------GMAIFDTIRHI  179 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a---------------GlaIYDtmr~i  179 (221)
                      +|.|+.+    ++.++...+.+.|..++.++..+-|.|.-+     |.|+++..               ...+++.|..+
T Consensus        17 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~   96 (260)
T 1sg4_A           17 VMKFKNPPVNSLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQS   96 (260)
T ss_dssp             EEEECCTTTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcCcCHHHHhccCHHHHHHHHHHHHHHHHHHHcC
Confidence            4555543    778888889888888887666677777766     56787642               23456778888


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEee--cCceeEEee
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCF--LAWFLLVIF  219 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~Al--PnS~~MIh~  219 (221)
                      +.||.+.+.|.|.+.|.-|++++|  -|++.  +++.|-+-+
T Consensus        97 ~kPvIAav~G~a~GgG~~lalacD--~~ia~~~~~a~f~~pe  136 (260)
T 1sg4_A           97 NLVLVSAINGACPAGGCLVALTCD--YRILADNPRYCIGLNE  136 (260)
T ss_dssp             SSEEEEEECEEBCHHHHHHHTTSS--EEEEECCTTCCBSCCG
T ss_pred             CCCEEEEECCeeehHHHHHHHhCC--EEEEecCCCCEEeCch
Confidence            999999999999999999999999  89999  889876544

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=97.30  E-value=0.0019  Score=55.97  Aligned_cols=95  Identities=14%  Similarity=0.133  Sum_probs=74.8

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEeCC-----CCCHHH---------------HHHHHHHHHh
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA---------------GMAIFDTIRH  178 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-----GGsV~a---------------GlaIYDtmr~  178 (221)
                      +|.|+.     .++.++...+.+.|..++.++..+-|.|.=+.|     |+++..               ...+++.|..
T Consensus        24 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~  103 (272)
T 1hzd_A           24 VLGINRAYGKNSLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIAN  103 (272)
T ss_dssp             EEEECCGGGTTCBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCCCChhhhhccChHHHHHHHHHHHHHHHHHHh
Confidence            456653     478888999999998888766667677665444     777643               2345677888


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       104 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  143 (272)
T 1hzd_A          104 LPVPTIAAIDGLALGGGLELALACD--IRVAASSAKMGLVET  143 (272)
T ss_dssp             CSSCEEEEESEEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             CCCCEEEEeCceEEecHHHHHHhCC--EEEEcCCCEEeCchh
Confidence            8999999999999999999999999  899999999876554

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=97.30  E-value=0.0015  Score=56.76  Aligned_cols=95  Identities=13%  Similarity=0.037  Sum_probs=75.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEeCC-----CCCHHH----------------HHHHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA----------------GMAIFDTIR  177 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-----GGsV~a----------------GlaIYDtmr  177 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+.+     |+++..                ...+++.|.
T Consensus        25 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~  104 (273)
T 2uzf_A           25 KVTINRPEVRNAFTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIR  104 (273)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHH
Confidence            4666654     77888888888888888766667777765544     777632                235677888


Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       105 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  145 (273)
T 2uzf_A          105 IIPKPVIAMVKGYAVGGGNVLNVVCD--LTIAADNAIFGQTGP  145 (273)
T ss_dssp             HSSSCEEEEECEEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             hCCCCEEEEECCEEeehhHHHHHhCC--EEEEcCCCEEECchh
Confidence            89999999999999999999999999  899999999876554

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=97.28  E-value=0.0021  Score=56.40  Aligned_cols=95  Identities=18%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH----------------HHHHHHHHHh
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRH  178 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a----------------GlaIYDtmr~  178 (221)
                      +|.|+.     .++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++..                ...+++.|..
T Consensus        45 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  124 (287)
T 2vx2_A           45 NIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRN  124 (287)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSCCC-CCGGGCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence            466654     3788889999999888887665666666544    56777521                2346677888


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       125 ~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  164 (287)
T 2vx2_A          125 HPVPVIAMVNGLATAAGCQLVASCD--IAVASDKSSFATPGV  164 (287)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             CCCCEEEEECCEEEcHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            8999999999999999999999999  899999999876554

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=97.27  E-value=0.0017  Score=55.34  Aligned_cols=94  Identities=12%  Similarity=-0.020  Sum_probs=74.3

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH----------HHHHHHHhcCCCeE
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM----------AIFDTIRHIRPDVS  184 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl----------aIYDtmr~i~~~V~  184 (221)
                      +|.|+.+     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++..-.          .+++.|..++.||.
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvI   94 (243)
T 2q35_A           15 QITMKDESSRNGFSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSGASKEFLIRKTRGEVEVLDLSGLILDCEIPII   94 (243)
T ss_dssp             EEEECCGGGTSBSCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECBSCHHHHHHHHTTCCCCCCCHHHHHTCCSCEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCCChHHHhhccchhhHHHHHHHHHHhCCCCEE
Confidence            4566543     778888889888888887665666666543    7788886532          34678889999999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        95 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  127 (243)
T 2q35_A           95 AAMQGHSFGGGLLLGLYAD--FVVFSQESVYATNF  127 (243)
T ss_dssp             EEECSEEETHHHHHHHTSS--EEEEESSSEEECCH
T ss_pred             EEEcCccccchHHHHHhCC--EEEEeCCCEEECCc
Confidence            9999999999999999999  89999999886544

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=97.27  E-value=0.0029  Score=54.61  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=72.5

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-------------------------
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------  169 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-------------------------  169 (221)
                      +|.|+-     .++.++...+.+.|..++.++..+-|.|.=+    |.||++..-                         
T Consensus        16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (275)
T 1dci_A           16 HVQLNRPEKRNAMNRAFWRELVECFQKISKDSDCRAVVVSGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISR   95 (275)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhcccccccchhhhhhHHHHHHHHH
Confidence            456653     3778888889888888877655565555533    678887431                         


Q ss_pred             -HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          170 -MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       170 -laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                       ..+++.|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus        96 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  145 (275)
T 1dci_A           96 YQKTFTVIEKCPKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKEV  145 (275)
T ss_dssp             HHHHHHHHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeHHHHHHHHhCC--EEEEeCCCEEeCccc
Confidence             1245567788999999999999999999999999  899999999876554

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=97.26  E-value=0.0013  Score=56.56  Aligned_cols=95  Identities=13%  Similarity=-0.096  Sum_probs=74.1

Q ss_pred             EEEEcC----ccChhHHHHHHHHHhcccccCCCCceEEEE-e----CCCCCHHH--------------H-HHHHHHHHhc
Q 027632          124 IIRCGG----PVEDDMANIIVAQLLYLDAVDPNKDIIMYL-N----SPGGSVTA--------------G-MAIFDTIRHI  179 (221)
Q Consensus       124 IIfL~G----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-N----SPGGsV~a--------------G-laIYDtmr~i  179 (221)
                      +|.|+.    .++.++...+.+.|..++.++..+-|.|.- +    |.|+++..              . ..+++.|..+
T Consensus        21 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 2ppy_A           21 EIHLHINKSNSYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAGADINFLRSADPRFKTQFCLFCNETLDKIARS  100 (265)
T ss_dssp             EEEECSSTTCCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeCcCHHHHhccchhHHHHHHHHHHHHHHHHHcC
Confidence            456654    467788888988888888766566666665 3    45888753              1 3567788888


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCc-eeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAW-FLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS-~~MIh~~  220 (221)
                      +.||.+.+.|.|.+.|.-|++++|  -|++.+++ .|-+-++
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~ag~f~~pe~  140 (265)
T 2ppy_A          101 PQVYIACLEGHTVGGGLEMALACD--LRFMGDEAGKIGLPEV  140 (265)
T ss_dssp             SSEEEEEECSEEETHHHHHHHTSS--EEEEETTCCCEECCGG
T ss_pred             CCCEEEEECCEEeeHHHHHHHhCC--EEEEeCCCCEEECccc
Confidence            999999999999999999999999  89999999 8765443

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=97.15  E-value=0.0033  Score=54.14  Aligned_cols=95  Identities=11%  Similarity=0.079  Sum_probs=73.5

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH----------------HHHHHHHHHhc
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRHI  179 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a----------------GlaIYDtmr~i  179 (221)
                      +|.|+-+    ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..                ...+++.|..+
T Consensus        18 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (261)
T 3pea_A           18 VATLNHAPANAMSSQVMHDVTELIDQVEKDDNIRVVVIHGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKC   97 (261)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhC
Confidence            4666554    788888889888888887665665555433    55666521                23467788999


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        98 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  136 (261)
T 3pea_A           98 SKPVIAAIHGAALGGGLEFAMSCH--MRFATESAKLGLPEL  136 (261)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             CCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECccc
Confidence            999999999999999999999998  899999999876554

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=97.07  E-value=0.0039  Score=53.72  Aligned_cols=94  Identities=13%  Similarity=0.060  Sum_probs=72.5

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH--------------------HHHHHH
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------GMAIFD  174 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a--------------------GlaIYD  174 (221)
                      +|.|+.     .++.++...+.+.|..++.++..+-|.|.=+    |.|+++..                    ...+++
T Consensus        15 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (269)
T 1nzy_A           15 EITIKLPRHRNALSVKAMQEVTDALNRAEEDDSVGAVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIH   94 (269)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHH
Confidence            455544     3778888899898888887666666666554    77777631                    123456


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        95 ~l~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe  137 (269)
T 1nzy_A           95 KIIRVKRPVLAAINGVAAGGGLGISLASD--MAICADSAKFVCAW  137 (269)
T ss_dssp             HHHHCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             HHHhCCCCEEEEECCeeecHHHHHHHhCC--EEEecCCCEEeCcc
Confidence            67788999999999999999999999999  89999999886544

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=97.06  E-value=0.0047  Score=53.17  Aligned_cols=94  Identities=17%  Similarity=0.068  Sum_probs=73.3

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH-----H------------HHHHHHHHHh
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----A------------GMAIFDTIRH  178 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~-----a------------GlaIYDtmr~  178 (221)
                      +|.|+.+    ++.++...+.+.|..++.++..+-|.|.=+    |.|+++.     .            ...+++.|..
T Consensus        23 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  102 (264)
T 1wz8_A           23 EITFRGEKLNAMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLN  102 (264)
T ss_dssp             EEEECCSGGGCBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCCCcCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCcccCccccccccccchHHHHHHHHHHHHHHHHHHc
Confidence            4556544    788888999888888887665666666655    7888873     1            1234556778


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus       103 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  141 (264)
T 1wz8_A          103 FPRPVVAAVEKVAVGAGLALALAAD--IAVVGKGTRLLDGH  141 (264)
T ss_dssp             SSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             CCCCEEEEECCeeechhHHHHHhCC--EEEecCCCEEeCch
Confidence            8899999999999999999999999  89999999886644

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=97.06  E-value=0.0051  Score=53.21  Aligned_cols=95  Identities=12%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-----------------HHHHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-----------------GMAIFDTIR  177 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-----------------GlaIYDtmr  177 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++..                 ...++..|.
T Consensus        17 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~   96 (266)
T 3fdu_A           17 TLAINRPEAKNALYGELYLWIAKALDEADQNKDVRVVVLRGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAA   96 (266)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence            4566554     677888888888888877655565555422    44555543                 235677888


Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        97 ~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  137 (266)
T 3fdu_A           97 RLSKPLIIAVKGVAIGIGVTILLQAD--LVFADNTALFQIPFV  137 (266)
T ss_dssp             HCCSCEEEEECSEEETHHHHGGGGCS--EEEECTTCEEECCTT
T ss_pred             hCCCCEEEEECCEEehHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            99999999999999999999999998  799999999876554

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=97.01  E-value=0.0029  Score=54.17  Aligned_cols=89  Identities=12%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHH----------------HHHHHHHHhcCCCeEEEEcc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG----------------MAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aG----------------laIYDtmr~i~~~V~Tv~~G  189 (221)
                      .++.++...+.+.|..++.++..+-|.|.    .=|.|+++..-                ..++..|..++.||.+.+.|
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  108 (256)
T 3qmj_A           29 AFNEALYDATAQALLDAADDPQVAVVLLTGSGRGFSAGTDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLICAVNG  108 (256)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            46778888888888888776655655552    45667776442                34677888999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       109 ~a~GgG~~lalacD--~~ia~~~a~f~~pe~  137 (256)
T 3qmj_A          109 LGVGIGATILGYAD--LAFMSSTARLKCPFT  137 (256)
T ss_dssp             EEETHHHHGGGGCS--EEEEETTCEEECCGG
T ss_pred             eehhHHHHHHHhCC--EEEEeCCCEEECccc
Confidence            99999999999998  899999999876554

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=96.97  E-value=0.0012  Score=56.72  Aligned_cols=95  Identities=14%  Similarity=0.084  Sum_probs=73.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH-------------HHHHHHHhcCC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM-------------AIFDTIRHIRP  181 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl-------------aIYDtmr~i~~  181 (221)
                      +|.|+.+     ++.++.+.+.+.|..++.++..+-|.|.=+    |.|+++..-.             ..++.|..++.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k   98 (260)
T 1mj3_A           19 LIQLNRPKALNALCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKK   98 (260)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSS
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCCcChHhhhcccchHHHHHHHHHHHHHHHhCCC
Confidence            4666544     788889999999888887665666666544    5788875411             12445667789


Q ss_pred             CeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          182 DVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       182 ~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||.+.+.|.|.++|.-|++++|  -|++.+++.|-+.++
T Consensus        99 PvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  135 (260)
T 1mj3_A           99 PVIAAVNGYALGGGCELAMMCD--IIYAGEKAQFGQPEI  135 (260)
T ss_dssp             CEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CEEEEECCEEEeHHHHHHHhCC--EEEEcCCCEEeCccc
Confidence            9999999999999999999999  899999999876543

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=96.96  E-value=0.0016  Score=56.35  Aligned_cols=89  Identities=11%  Similarity=0.077  Sum_probs=69.4

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHH-------------HHHHHHHHhcCCCeEEEEcceec
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG-------------MAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aG-------------laIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      .++.++...+.+.|..++.++..+-|.|.    .=|.|+++..-             ..+++.|..++.||.+.+.|.|.
T Consensus        33 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  112 (263)
T 3moy_A           33 ALNQTLEAEVLDAARDFDADLEIGAIVVTGSERAFAAGADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVAGYAL  112 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEEESBCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEECBEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeeCCcChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEECCEee
Confidence            36778888888888888776555555552    34556676532             24678899999999999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          193 SMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.|.-|++++|  -|++.+++.|-+-++
T Consensus       113 GgG~~lalacD--~~ia~~~a~f~~pe~  138 (263)
T 3moy_A          113 GGGCELAMLCD--LVIAADTARFGQPEI  138 (263)
T ss_dssp             THHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             hHHHHHHHHCC--EEEecCCCEEeCccc
Confidence            99999999999  799999999876543

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=96.93  E-value=0.0044  Score=54.26  Aligned_cols=95  Identities=16%  Similarity=0.106  Sum_probs=72.7

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH---------------HHHHHHHHHhcC
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA---------------GMAIFDTIRHIR  180 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a---------------GlaIYDtmr~i~  180 (221)
                      +|.|+.+    ++.++...+.+.|..++.++..+-|.|.=    =|.|+++..               ...++..|..++
T Consensus        36 ~ItlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  115 (277)
T 4di1_A           36 TLVVSRPPTNAMTRQVYREIVAAADELGRRDDIGAVVLFGGHEIFSAGDDMPELRTLNAPEADTAARVRLEAIDAVAAIP  115 (277)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSCSBCCBCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCEecCcCcccccccChHHHHHHHHHHHHHHHHHHhCC
Confidence            4666655    78888899999888888765555555432    244566533               235677888999


Q ss_pred             CCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          181 PDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       181 ~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       116 kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  153 (277)
T 4di1_A          116 KPTVAAVTGYALGAGLTLALAAD--WRVSGDNVKFGATEI  153 (277)
T ss_dssp             SCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CCEEEEECCeEehhHHHHHHhCC--EEEEcCCCEEECccc
Confidence            99999999999999999999998  899999999876543

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=96.88  E-value=0.0062  Score=52.52  Aligned_cols=88  Identities=11%  Similarity=0.045  Sum_probs=68.3

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeC-----CCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-----PGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINS-----PGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++...+.+.|..++.++..+-|.|.=+.     -|+++..               ...+++.|..++.||.+.+.|.
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  112 (265)
T 3kqf_A           33 LSLALLEELQNILTQINEEANTRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIAAINGI  112 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEEecCCCCeeeeCcChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECCe
Confidence            6778888888888888765555555554333     2556532               3456778888999999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       113 a~GgG~~lalacD--~ria~~~a~f~~pe~  140 (265)
T 3kqf_A          113 ALGGGTELSLACD--FRIAAESASLGLTET  140 (265)
T ss_dssp             EETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             eehHHHHHHHhCC--EEEEcCCcEEECccc
Confidence            9999999999998  899999999876554

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=96.88  E-value=0.0034  Score=53.90  Aligned_cols=86  Identities=9%  Similarity=0.047  Sum_probs=64.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE-eCC-----CCCHH--------------HHHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL-NSP-----GGSVT--------------AGMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-NSP-----GGsV~--------------aGlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++.+.+.+.|..++.++ .+-|.|.= +.|     |+++.              ....+++.|..++.||.+.+.|.
T Consensus        28 l~~~~~~~L~~al~~~~~d~-vr~vVltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  106 (261)
T 1ef8_A           28 LSKVFIDDLMQALSDLNRPE-IRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEGS  106 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCSTT-CCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCC-ceEEEEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            56677777777777776654 55554443 332     66653              23466778888999999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       107 a~GgG~~lalacD--~ria~~~a~f~~pe  133 (261)
T 1ef8_A          107 VWGGAFEMIMSSD--LIIAASTSTFSMTP  133 (261)
T ss_dssp             EETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             EEeHhHHHHHhCC--EEEecCCCEEeCch
Confidence            9999999999999  89999999886544

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=96.85  E-value=0.0064  Score=52.94  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=68.9

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------------HHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDT  175 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------------GlaIYDt  175 (221)
                      +|.|+.+     ++.++...+.+.|..++.++.. -|.|.=+    |.|+++..                   ...++..
T Consensus        38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~v-~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T 2f6q_A           38 KIMFNRPKKKNAINTEMYHEIMRALKAASKDDSI-ITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGC  116 (280)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHSSCS-EEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCE-EEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHH
Confidence            4566543     7788888898888888765433 3333333    67777632                   1235667


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus       117 l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe  158 (280)
T 2f6q_A          117 FIDFPKPLIAVVNGPAVGISVTLLGLFD--AVYASDRATFHTPF  158 (280)
T ss_dssp             HHSCCSCEEEEECSCEETHHHHGGGGCS--EEEEETTCEEECCT
T ss_pred             HHcCCCCEEEEECCeeehHHHHHHHhCC--EEEECCCcEEECch
Confidence            7888999999999999999999999999  79999999887644

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=96.84  E-value=0.0051  Score=53.56  Aligned_cols=92  Identities=11%  Similarity=0.088  Sum_probs=69.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHH----------HHHHHHHHHHhcCCCeE
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT----------AGMAIFDTIRHIRPDVS  184 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~----------aGlaIYDtmr~i~~~V~  184 (221)
                      +|.|+-+     ++.++...+.+.|..++.+ ..+-|.|.    .=|.|+++.          ....++..|..++.||.
T Consensus        33 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d-~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvI  111 (264)
T 3he2_A           33 TIELQRPERRNALNSQLVEELTQAIRKAGDG-SARAIVLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVV  111 (264)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHCC----CCSEEEEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEE
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhC-CceEEEEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEE
Confidence            4666544     7788899999888888754 45555553    235666654          24567788889999999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      +.+.|.|.+.|.-|++++|  -|++.+++.|-+-
T Consensus       112 Aav~G~a~GgG~~lalacD--~ria~~~a~f~~p  143 (264)
T 3he2_A          112 GAINGPAIGAGLQLAMQCD--LRVVAPDAFFQFP  143 (264)
T ss_dssp             EEECSCEETHHHHHHHHSS--EEEECTTCEEECT
T ss_pred             EEECCcEEcchhHHHHhCC--EEEEcCCCEEECc
Confidence            9999999999999999999  8999999988653

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=96.81  E-value=0.0056  Score=52.68  Aligned_cols=95  Identities=12%  Similarity=0.040  Sum_probs=71.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHH--------------------HHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA--------------------GMAIFD  174 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~a--------------------GlaIYD  174 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++..                    ...++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (267)
T 3oc7_A           23 RLTLNSPHNRNALSTALVSQLHQGLRDASSDPAVRVVVLAHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMR  102 (267)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSEEECCBC-----------CHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHH
Confidence            4666553     7788899999988888876656666653    3455666532                    224566


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       103 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  146 (267)
T 3oc7_A          103 AIVESRLPVIAAIDGHVRAGGFGLVGACD--IAVAGPRSSFALTEA  146 (267)
T ss_dssp             HHHHCSSCEEEEECSEEETTHHHHHHHSS--EEEECTTCEEECCGG
T ss_pred             HHHhCCCCEEEEEcCeecccchHHHHHCC--EEEEcCCCEEeCccc
Confidence            77888999999999999999999999999  799999999876543

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=96.79  E-value=0.012  Score=51.03  Aligned_cols=94  Identities=14%  Similarity=0.020  Sum_probs=71.3

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH------------------HHHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA------------------GMAIFDTI  176 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a------------------GlaIYDtm  176 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++..                  ...++..|
T Consensus        16 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l   95 (268)
T 3i47_A           16 LLTMNRISKHNAFDNQLLTEMRIRLDSAINDTNVRVIVLKANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSI   95 (268)
T ss_dssp             EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHH
Confidence            4566543     788888899888888887665565555432    44566532                  12456778


Q ss_pred             HhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       177 r~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus        96 ~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  136 (268)
T 3i47_A           96 SQSPKPTIAMVQGAAFGGGAGLAAACD--IAIASTSARFCFSE  136 (268)
T ss_dssp             HHCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECCG
T ss_pred             HhCCCCEEEEECCEEEhHhHHHHHhCC--EEEEcCCCEEECcc
Confidence            888999999999999999999999999  79999999886544

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=96.77  E-value=0.0042  Score=59.94  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=69.4

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.+.....-+...+.  ..-||..++|+||          |-+.+|-.+.+.+...+.|+.|++.|-|+|.|++.
T Consensus       361 G~l~~~~a~Kaar~i~~a~~--~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~a  438 (548)
T 2bzr_A          361 GCLDINASEKAARFVRTCDC--FNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYCV  438 (548)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHH
Confidence            67788777666553333332  3689999999999          88999999999999999999999999999999888


Q ss_pred             Hhc----CCCCcEEeecCceeEE
Q 027632          199 LSA----GTKGKYLCFLAWFLLV  217 (221)
Q Consensus       199 laA----GdkgkR~AlPnS~~MI  217 (221)
                      +++    ++  ..++.||+.+-+
T Consensus       439 m~~~~~~~d--~~~awp~a~i~V  459 (548)
T 2bzr_A          439 MGSKDMGCD--VNLAWPTAQIAV  459 (548)
T ss_dssp             TTCGGGTCS--EEEECTTCEEES
T ss_pred             hccccCCCC--EEEEcCCCEEEe
Confidence            776    44  789999998743

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=96.77  E-value=0.0093  Score=51.72  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=73.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------------HHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDT  175 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------------GlaIYDt  175 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..                   ...+++.
T Consensus        29 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (279)
T 3g64_A           29 TVTLARPDKLNALTFEAYADLRDLLAELSRRRAVRALVLAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRA  108 (279)
T ss_dssp             EEEESCGGGTTCBCHHHHHHHHHHHHHHHHTTCCSEEEEEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHH
Confidence            4666654     778889999999988887665665555432    34666521                   1356677


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       109 l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  151 (279)
T 3g64_A          109 VRECPFPVIAALHGVAAGAGAVLALAAD--FRVADPSTRFAFLFT  151 (279)
T ss_dssp             HHHSSSCEEEEECSEEETHHHHHHHHSS--EEEECTTCEEECCGG
T ss_pred             HHhCCCCEEEEEcCeeccccHHHHHhCC--EEEEeCCCEEeCchh
Confidence            8889999999999999999999999998  899999999876543

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=96.74  E-value=0.0029  Score=54.38  Aligned_cols=95  Identities=20%  Similarity=0.251  Sum_probs=71.3

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH---------HHHHHHHHHHhcCCCeEE
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT---------AGMAIFDTIRHIRPDVST  185 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~---------aGlaIYDtmr~i~~~V~T  185 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++.         ....+++.|..++.||.+
T Consensus        18 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIA   97 (255)
T 3p5m_A           18 RIRLDRPEKLNAVDTPMLEELSVHIRDAEADESVRAVLLTGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIA   97 (255)
T ss_dssp             EEEECCGGGTTEECHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEE
Confidence            4555543     678888899988888887655555554322    3344442         234678889999999999


Q ss_pred             EEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          186 VCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       186 v~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        98 av~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  130 (255)
T 3p5m_A           98 GVHGAAVGFGCSLALACD--LVVAAPASYFQLAFT  130 (255)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEECTTCEEECGGG
T ss_pred             EeCCeehhhHHHHHHHCC--EEEEcCCcEEeCccc
Confidence            999999999999999998  799999998876543

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=96.69  E-value=0.0066  Score=52.30  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=70.5

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHH---------------------HHHHHHH
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVT---------------------AGMAIFD  174 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~---------------------aGlaIYD  174 (221)
                      +|.|+.+    ++.++...+.+.|..++.++..+-|.|.    .=|.|+++.                     ....+++
T Consensus        19 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (263)
T 3l3s_A           19 TLTLGRAPAHPLSRAMIAALHDALRRAMGDDHVHVLVIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALML   98 (263)
T ss_dssp             EEEECSTTTCCCCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHH
Confidence            4666554    7788888888888888765545555442    234555542                     1245677


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|..+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        99 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  141 (263)
T 3l3s_A           99 DLAHCPKPTIALVEGIATAAGLQLMAACD--LAYASPAARFCLPG  141 (263)
T ss_dssp             HHHTCSSCEEEEESSEEETHHHHHHHHSS--EEEECTTCEEECCT
T ss_pred             HHHhCCCCEEEEECCEEEHHHHHHHHHCC--EEEecCCCEEeCch
Confidence            78889999999999999999999999998  89999999886544

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=96.67  E-value=0.0057  Score=53.76  Aligned_cols=87  Identities=14%  Similarity=0.004  Sum_probs=68.0

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC-----CCCHHH-----------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----GGSVTA-----------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-----GGsV~a-----------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.|..++.++..+-|.|.=+.+     |+++..                 ...+++.|..++.||.+.+.
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~  131 (289)
T 3t89_A           52 FRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAMVA  131 (289)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEC
Confidence            67778888888888887766566666654444     666521                 23567788999999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       132 G~a~GgG~~lalacD--~ria~~~a~f~~pe  160 (289)
T 3t89_A          132 GYSIGGGHVLHMMCD--LTIAADNAIFGQTG  160 (289)
T ss_dssp             SEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             CEeehHHHHHHHhCC--EEEEeCCCEEeccc
Confidence            999999999999998  79999999986543

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=96.67  E-value=0.005  Score=53.57  Aligned_cols=87  Identities=10%  Similarity=0.027  Sum_probs=66.5

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEE-----eCC-----CCCHHH----------------HHHHHHHHHhcCCCe
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSP-----GGSVTA----------------GMAIFDTIRHIRPDV  183 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-----NSP-----GGsV~a----------------GlaIYDtmr~i~~~V  183 (221)
                      .++.++...+.+.|..++.++..+-|.|.=     ..+     |+++..                ...+++.|..++.||
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  112 (275)
T 4eml_A           33 AFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVV  112 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            367778888888888777665556555554     333     555421                235678889999999


Q ss_pred             EEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          184 STVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       184 ~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .+.+.|.|.++|.-|++++|  -|++.+++.|-+-
T Consensus       113 IAav~G~a~GgG~~lalacD--~~ia~~~a~f~~p  145 (275)
T 4eml_A          113 IALVAGYAIGGGHVLHLVCD--LTIAADNAIFGQT  145 (275)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECC
T ss_pred             EEEECCeeehHHHHHHHhCC--EEEEcCCCEEECc
Confidence            99999999999999999998  8999999998653

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=96.62  E-value=0.01  Score=51.46  Aligned_cols=94  Identities=18%  Similarity=0.090  Sum_probs=69.5

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-------------------------
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------------  169 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-------------------------  169 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..-                         
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (280)
T 1pjh_A           21 IIHLINPDNLNALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVAR  100 (280)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHH
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCCcCHHHHhhcccccccchhhhHHHHHHHHHHH
Confidence            4556543     777888888888887776554555554422    566776421                         


Q ss_pred             -HHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEee-cCceeEEee
Q 027632          170 -MAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF-LAWFLLVIF  219 (221)
Q Consensus       170 -laIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~Al-PnS~~MIh~  219 (221)
                       ..+++.|..++.||.+.+.|.|.++|.-|++++|  -|++. +++.|-+-+
T Consensus       101 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~~ia~~~~a~f~~pe  150 (280)
T 1pjh_A          101 NVYVTDAFIKHSKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLYPF  150 (280)
T ss_dssp             HHHHHHHHHHCCSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEECCH
T ss_pred             HHHHHHHHHhCCCCEEEEECCeeeeHHHHHHHHCC--EEEEeCCCCEEeCch
Confidence             1345677888999999999999999999999999  79999 999887654

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=96.57  E-value=0.0076  Score=52.80  Aligned_cols=94  Identities=11%  Similarity=0.093  Sum_probs=71.3

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH----------------HHHHHHHHHh
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA----------------GMAIFDTIRH  178 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a----------------GlaIYDtmr~  178 (221)
                      +|.|+.     .++.++...+.+.|..++.++..+-|.|.=    =|-|+++..                ...++..|..
T Consensus        38 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~  117 (286)
T 3myb_A           38 TLTLNRPQAFNALSEAMLAALGEAFGTLAEDESVRAVVLAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQR  117 (286)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHc
Confidence            456654     467888888988888887665556555532    245666532                2356677888


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       118 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  156 (286)
T 3myb_A          118 LPAPVIARVHGIATAAGCQLVAMCD--LAVATRDARFAVSG  156 (286)
T ss_dssp             SSSCEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECGG
T ss_pred             CCCCEEEEECCeehHHHHHHHHhCC--EEEEcCCCEEECcc
Confidence            8999999999999999999999999  79999999987544

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=96.57  E-value=0.0071  Score=52.71  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=71.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHH-----------------HHHHHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTA-----------------GMAIFDTIR  177 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~a-----------------GlaIYDtmr  177 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++..                 ...++..|.
T Consensus        40 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  119 (276)
T 3rrv_A           40 IITLNRPDSLNSVNDDLHVGLARLWQRLTDDPTARAAVITGAGRAFSAGGDFGYLKELSADADLRAKTIRDGREIVLGMA  119 (276)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhhcccchHHHHHHHHHHHHHHHHHH
Confidence            4566543     6788889999998888876656655553    2456677632                 134667788


Q ss_pred             hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          178 HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       178 ~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      .++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-
T Consensus       120 ~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~p  158 (276)
T 3rrv_A          120 RCRIPVVAAVNGPAVGLGCSLVALSD--IVYIAENAYLADP  158 (276)
T ss_dssp             HCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECC
T ss_pred             hCCCCEEEEECceeeHHHHHHHHHCC--EEEEeCCCEEECc
Confidence            89999999999999999999999999  7999999988653

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=96.56  E-value=0.0049  Score=53.47  Aligned_cols=95  Identities=11%  Similarity=0.065  Sum_probs=68.9

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHH------------H--------HHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGM------------A--------IFD  174 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGl------------a--------IYD  174 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..-.            .        +++
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (276)
T 2j5i_A           21 FVILNRPEKRNAMSPTLNREMIDVLETLEQDPAAGVLVLTGAGEAWTAGMDLKEYFREVDAGPEILQEKIRREASQWQWK  100 (276)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTEEEEEEEESTTCSBCCBCHHHHHHHHHHSCTTHHHHHHHHHHHHHTT
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcCCcChhhHhhccccchhHHHHHHHHHHHHHHHH
Confidence            4556543     677888888888888876544444444433    7788875421            0        133


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       101 ~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  144 (276)
T 2j5i_A          101 LLRMYAKPTIAMVNGWCFGGGFSPLVACD--LAICADEATFGLSEI  144 (276)
T ss_dssp             TTTTCSSCEEEEECSCEEGGGHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             HHHhCCCCEEEEECCeeehhHHHHHHhCC--EEEEcCCCEEeCccc
Confidence            45566789999999999999999999999  899999999876543

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=96.53  E-value=0.0093  Score=53.76  Aligned_cols=88  Identities=16%  Similarity=0.021  Sum_probs=69.2

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC-----------CCCHHH--------------------------HHHHH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP-----------GGSVTA--------------------------GMAIF  173 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP-----------GGsV~a--------------------------GlaIY  173 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=+.+           |+++..                          ...++
T Consensus        81 l~~~~~~eL~~al~~~~~d~~vrvVVltG~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T 3t8b_A           81 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQ  160 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCSCTTTTC----------------------CCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHHHH
Confidence            67788888888888888766666666654433           666532                          12466


Q ss_pred             HHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEee-cCceeEEeec
Q 027632          174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCF-LAWFLLVIFV  220 (221)
Q Consensus       174 Dtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~Al-PnS~~MIh~~  220 (221)
                      ..|+.+++||.+.+.|.|.+.|.-|++++|  -|+|. +++.|.+-++
T Consensus       161 ~~i~~~~kPvIAaV~G~A~GgG~~LalacD--~riAs~~~A~f~~pe~  206 (334)
T 3t8b_A          161 RLIRFMPKVVICLVNGWAAGGGHSLHVVCD--LTLASREYARFKQTDA  206 (334)
T ss_dssp             HHHHHSSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECCCT
T ss_pred             HHHHhCCCCEEEEECCccccCcchhHhhCC--EEEEeCCCcEEECccc
Confidence            788899999999999999999999999999  89999 9999876554

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=96.51  E-value=0.011  Score=50.80  Aligned_cols=88  Identities=13%  Similarity=0.089  Sum_probs=65.7

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------------HHHHHHHHHhcCCCeEEE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDTIRHIRPDVSTV  186 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------------GlaIYDtmr~i~~~V~Tv  186 (221)
                      .++.++...+.+.|..++.++ .+-|.|.=+    |.|+++..                   ...+++.|..++.||.+.
T Consensus        29 al~~~~~~~L~~al~~~~~d~-~r~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  107 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAADD-SKLVLLSAVGSVFCCGLDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKKPIIVA  107 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHSS-CSCEEEEESSSCSBCEECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CEEEEEecCCCccccccCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            367788888888888877654 454444322    56677642                   123456677889999999


Q ss_pred             EcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          187 CVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       187 ~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       108 v~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  139 (261)
T 2gtr_A          108 VNGPAIGLGASILPLCD--VVWANEKAWFQTPYT  139 (261)
T ss_dssp             ECSCEETHHHHTGGGSS--EEEEETTCEEECCTT
T ss_pred             ECCeEeeHHHHHHHhCC--EEEEcCCCEEeCchh
Confidence            99999999999999998  799999999866443

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=96.48  E-value=0.0054  Score=53.60  Aligned_cols=95  Identities=15%  Similarity=0.089  Sum_probs=70.7

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHH-------------HHHHHHHhcCC
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGM-------------AIFDTIRHIRP  181 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGl-------------aIYDtmr~i~~  181 (221)
                      +|.|+-     .++.++...+.+.|..++.++..+-|.|.    .=|.|+++..-.             ..++.|..++.
T Consensus        37 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~k  116 (278)
T 3h81_A           37 IITLNRPQALNALNSQVMNEVTSAATELDDDPDIGAIIITGSAKAFAAGADIKEMADLTFADAFTADFFATWGKLAAVRT  116 (278)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEECCBCSHHHHTCCHHHHHHHTTTGGGHHHHTCCS
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCCeecCcCHHHHhccChhhHHHHHHHHHHHHHHhCCC
Confidence            466653     37788888998888888766555555552    345566654311             12566888899


Q ss_pred             CeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          182 DVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       182 ~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       117 PvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  153 (278)
T 3h81_A          117 PTIAAVAGYALGGGCELAMMCD--VLIAADTAKFGQPEI  153 (278)
T ss_dssp             CEEEEECBEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CEEEEECCeeehHHHHHHHHCC--EEEEcCCCEEECchh
Confidence            9999999999999999999998  799999999876543

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=96.42  E-value=0.012  Score=49.74  Aligned_cols=88  Identities=20%  Similarity=0.235  Sum_probs=65.2

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEE----EEeCCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIM----YLNSPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~L----yINSPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      .++.++...+.+.|..++.+ +.+-|.|    ..=|-|+++..               ...++..|..+++||.+.+.|.
T Consensus        27 al~~~~~~~L~~al~~~~~d-~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  105 (233)
T 3r6h_A           27 VLGPTMQQALNEAIDAADRD-NVGALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACTGH  105 (233)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TCSEEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCeEEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEECCc
Confidence            36677888888888777754 3443333    12344556432               2456778888999999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.++|.-|++++|  -|++.+++.|-+-++
T Consensus       106 a~GgG~~lalacD--~~ia~~~a~f~~pe~  133 (233)
T 3r6h_A          106 AIAMGAFLLCSGD--HRVAAHAYNVQANEV  133 (233)
T ss_dssp             EETHHHHHHTTSS--EEEECTTCCEECCGG
T ss_pred             chHHHHHHHHhCC--EEEEeCCcEEECchh
Confidence            9999999999998  899999998876543

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=96.42  E-value=0.0068  Score=52.55  Aligned_cols=94  Identities=13%  Similarity=0.047  Sum_probs=71.3

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHH-----------------HHHHHHHHh
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAG-----------------MAIFDTIRH  178 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aG-----------------laIYDtmr~  178 (221)
                      +|.|+.+    ++.++...+.+.|..++.++..+-|.|.=    =|.|+++..-                 ..++..|..
T Consensus        26 ~itlnrp~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (272)
T 3qk8_A           26 NLVLDSPGLNSVGPQMHRDLADVWPVIDRDPDVRVVLVRGEGKAFSSGGSFELIDETIGDYEGRIRIMREARDLVLNLVN  105 (272)
T ss_dssp             EEEECCHHHHEECHHHHHHHHHHHHHHHHCTTCSEEEEEESSSCSBCEECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCcCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCeeCCcCHHHHhccccchHHHHHHHHHHHHHHHHHHh
Confidence            4666554    78888889999888888765556555532    2445565321                 235667888


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       106 ~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  144 (272)
T 3qk8_A          106 LDKPVVSAIRGPAVGAGLVVALLAD--ISVASATAKIIDGH  144 (272)
T ss_dssp             CCSCEEEEECSEEEHHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             CCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECch
Confidence            8999999999999999999999999  89999999987654

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=96.41  E-value=0.027  Score=47.92  Aligned_cols=95  Identities=15%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCH--------------HHHHHHHHHHHhcC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSV--------------TAGMAIFDTIRHIR  180 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV--------------~aGlaIYDtmr~i~  180 (221)
                      +|.|+-|     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++              .....+++.|..++
T Consensus        12 ~itlnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   91 (254)
T 3hrx_A           12 VLTLNRPEKLNAITGELLDALYAALKEGEEDREVRALLLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLE   91 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCS
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCC
Confidence            4566554     788888899998888887655554443311    223333              23346788899999


Q ss_pred             CCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          181 PDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       181 ~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus        92 kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  129 (254)
T 3hrx_A           92 KPLVVAVNGVAAGAGMSLALWGD--LRLAAVGASFTTAFV  129 (254)
T ss_dssp             SCEEEEECSEEETHHHHHHTTCS--EEEEETTCEEECCGG
T ss_pred             CCEEEEECCEeeehhhhhhhccc--eeeEcCCCEEEchhh
Confidence            99999999999999999999998  899999999876554

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=96.41  E-value=0.015  Score=51.13  Aligned_cols=87  Identities=15%  Similarity=0.104  Sum_probs=65.3

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-------------------HHHHHHHHhcCCCeEEE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-------------------MAIFDTIRHIRPDVSTV  186 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-------------------laIYDtmr~i~~~V~Tv  186 (221)
                      .++.++...+.+.|..++.++ .+-|.|.=+    |.|+++..-                   ..++..|..++.||.+.
T Consensus        47 al~~~m~~~L~~al~~~~~d~-~r~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  125 (291)
T 2fbm_A           47 ALNTEVIKEIVNALNSAAADD-SKLVLFSAAGSVFCCGLDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKPIVVS  125 (291)
T ss_dssp             CBCHHHHHHHHHHHHHHHHSS-CSEEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CeEEEEECCCCCccCCcCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            377888888888888877654 443333322    567776431                   13456677889999999


Q ss_pred             EcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          187 CVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       187 ~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.|.|.++|.-|++++|  -|++.+++.|-+-+
T Consensus       126 V~G~a~GgG~~LalacD--~ria~~~a~f~~pe  156 (291)
T 2fbm_A          126 VNGPAIGLGASILPLCD--LVWANEKAWFQTPY  156 (291)
T ss_dssp             ECSCEETHHHHTGGGSS--EEEEETTCEEECCH
T ss_pred             ECCeeecHHHHHHHhCC--EEEEeCCCEEECcH
Confidence            99999999999999999  79999999886544

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=96.38  E-value=0.0044  Score=53.49  Aligned_cols=95  Identities=12%  Similarity=-0.012  Sum_probs=68.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH------HHHHHHHHhcCCCeEEEEc
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG------MAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG------laIYDtmr~i~~~V~Tv~~  188 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+    |.|+++..-      ..+...|..+++||.+.+.
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~  100 (256)
T 3pe8_A           21 TLTLNRPQSRNALSAELRSTFFRALSDAQNDDDVDVVIVTGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAIN  100 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEEC
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEEC
Confidence            4666554     788889999999888887655555544322    334554321      1222445667789999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.|.+.|.-|++++|  -|++.+++.|-+.++
T Consensus       101 G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  130 (256)
T 3pe8_A          101 GAAVTGGLELALYCD--ILIASENAKFADTHA  130 (256)
T ss_dssp             SEEETHHHHHHHHSS--EEEEETTCEEECCHH
T ss_pred             CeeechHHHHHHhCC--EEEEcCCCEEECchh
Confidence            999999999999998  799999999876543

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=96.37  E-value=0.0063  Score=52.44  Aligned_cols=85  Identities=11%  Similarity=-0.005  Sum_probs=65.3

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH---------------HHHHHHHHHhcCCCeEEEEcce
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a---------------GlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      .++.++...+.+.|..++.++..+-|.|.=+    |.|+++..               ...+++.|..++.||.+.+.|.
T Consensus        39 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  118 (257)
T 1szo_A           39 VWTSTAHDELAYCFHDIACDRENKVVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNGP  118 (257)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCccccCcCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCc
Confidence            3677888888888888877655665555443    55666532               1346677888899999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEE
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      |. +|.-|++++|  -|++.+++.|-+
T Consensus       119 a~-GG~~LalacD--~ria~~~a~f~~  142 (257)
T 1szo_A          119 VT-NAPEIPVMSD--IVLAAESATFQD  142 (257)
T ss_dssp             BC-SSTHHHHTSS--EEEEETTCEEEC
T ss_pred             hH-HHHHHHHHCC--EEEEeCCCEEec
Confidence            99 5899999998  899999998865

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=96.36  E-value=0.01  Score=51.96  Aligned_cols=94  Identities=12%  Similarity=0.044  Sum_probs=67.6

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHH----------------------HHHHH
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVT----------------------AGMAI  172 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~----------------------aGlaI  172 (221)
                      +|.|+-     .++.++...+.+.|..++.++..+-|.|.=    =|-|+++.                      ....+
T Consensus        36 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (290)
T 3sll_A           36 LVTLNRPERMNAMAFDVMLPFKQMLVDISHDNDVRAVVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEV  115 (290)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHTCTTCCEEEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHcCCCeeEEEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHH
Confidence            456654     366788888888888887655455554432    23455532                      12356


Q ss_pred             HHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       173 YDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ++.|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       116 ~~~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe  160 (290)
T 3sll_A          116 ILTLRRMHQPVIAAINGAAIGGGLCLALACD--VRVASQDAYFRAAG  160 (290)
T ss_dssp             HHHHHHCSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECTT
T ss_pred             HHHHHhCCCCEEEEECCeehHHHHHHHHHCC--EEEEeCCCEEECch
Confidence            7778889999999999999999999999999  79999999886544

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=96.36  E-value=0.016  Score=50.33  Aligned_cols=95  Identities=15%  Similarity=0.178  Sum_probs=69.7

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH-------------------HHHHHHH
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA-------------------GMAIFDT  175 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a-------------------GlaIYDt  175 (221)
                      +|.|+-     .++.++...+.+.|..++.++..+-|.|.=+    |-|+++.+                   ...++..
T Consensus        27 ~itlnRP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  106 (274)
T 4fzw_C           27 TLTLNRPERLNSFNDEMHAQLAECLKQVERDDTIRCLLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRR  106 (274)
T ss_dssp             EEEECCTTTTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHH
T ss_pred             EEEEcCcCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHH
Confidence            456643     3778888888888888887654554443211    33444321                   1246677


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |..+++||.+.+.|.|...|.-|++++|  -|++.+++.|-+-++
T Consensus       107 l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  149 (274)
T 4fzw_C          107 LAKLPKPVICAVNGVAAGAGATLALGGD--IVIAARSAKFVMAFS  149 (274)
T ss_dssp             HHHCSSCEEEEECSCEETHHHHHHHTSS--EEEEETTCEEECCGG
T ss_pred             HHHCCCCEEEEECCceeecCceeeeccc--eEEECCCCEEECccc
Confidence            8899999999999999999999999999  799999999876554

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=96.31  E-value=0.024  Score=50.59  Aligned_cols=95  Identities=13%  Similarity=-0.005  Sum_probs=68.1

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH--------------------------
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA--------------------------  168 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a--------------------------  168 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..                          
T Consensus        47 ~ItLnrP~~~NAl~~~m~~eL~~al~~~~~d~~vrvvVltG~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (333)
T 3njd_A           47 RITFNRPEKGNAIVADTPLELSALVERADLDPDVHVILVSGRGEGFCAGFDLSAYAEGSSSAGGGSPYEGTVLSGKTQAL  126 (333)
T ss_dssp             EEEECCGGGTTCBCTHHHHHHHHHHHHHHHCTTCCEEEEEESTTSSBCCBC---------------CCTTSTTCHHHHHH
T ss_pred             EEEeCCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecCcCHHHHhhccccccccccccccccccccccc
Confidence            4666554     77888888988888888765555444422    134455432                          


Q ss_pred             -------------------HHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          169 -------------------GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       169 -------------------GlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                                         ...++..|..+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~rias~~a~f~~pe~  195 (333)
T 3njd_A          127 NHLPDEPWDPMVDYQMMSRFVRGFASLMHCDKPTVVKIHGYCVAGGTDIALHAD--QVIAAADAKIGYPPM  195 (333)
T ss_dssp             TTCSSSCCCHHHHHHHHHHHHHHHTHHHHSSSCEEEEECSEEETHHHHHHTTSS--EEEECTTCEEECGGG
T ss_pred             ccccccccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECCEEeHHHHHHHHhCC--EEEECCCCeeechhh
Confidence                               11234567788999999999999999999999998  799999998876543

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=96.30  E-value=0.025  Score=51.13  Aligned_cols=95  Identities=13%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH------------------HHHHHHH
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA------------------GMAIFDT  175 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a------------------GlaIYDt  175 (221)
                      +|.|+-     .++.++...+.+.|..++.++..+-|.|.=+     |-||++.+                  ...++..
T Consensus        21 ~itLnrP~~~NAl~~~m~~~l~~al~~~~~d~~vr~vvltg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (353)
T 4hdt_A           21 LLTLNRPKAINSLTHGMVTTMAERLAAWENDDSVRAVLLTGAGERGLCAGGDVVAIYHSAKADGAEARRFWFDEYRLNAH  100 (353)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSBSBCCBCHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHHhCCCceEEEEEeCCCCCEecCcCHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence            455653     3788889999998888887655555555422     34667532                  2346677


Q ss_pred             HHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          176 IRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       176 mr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |..+++||.+.+.|.|.++|.-|+++||  -|++.+++.|-+-++
T Consensus       101 i~~~~kPvIAav~G~a~GgG~~lal~cD--~ria~~~a~f~~pe~  143 (353)
T 4hdt_A          101 IGRYPKPYVSIMDGIVMGGGVGVGAHGN--VRVVTDTTKMAMPEV  143 (353)
T ss_dssp             HHHCSSCEEEEECBEEETHHHHHHTTSS--EEEECTTCEEECCGG
T ss_pred             HHHCCCCEEEEeECceeecCccccCCcC--eeccchhccccCccc
Confidence            8889999999999999999999999998  899999999876543

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.27  E-value=0.0061  Score=54.55  Aligned_cols=87  Identities=10%  Similarity=0.004  Sum_probs=65.0

Q ss_pred             EcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH-------HHHHHHHHhc---CCCeEEEEcceechHHH
Q 027632          127 CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-------MAIFDTIRHI---RPDVSTVCVGLAASMGA  196 (221)
Q Consensus       127 L~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG-------laIYDtmr~i---~~~V~Tv~~GlAASmAa  196 (221)
                      ++|.++....+.+...+......  .-++.+..+|+|+.+.++       -.|...+..+   +.|+.+++.|-|+++|+
T Consensus       130 ~ggslg~~~~~Ki~r~~e~A~~~--~~PvI~l~~sGGarlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV~G~~~GGg~  207 (304)
T 2f9y_B          130 MGGSMGSVVGARFVRAVEQALED--NCPLICFSASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVS  207 (304)
T ss_dssp             TTTCBCTHHHHHHHHHHHHHHHH--TCCEEEEEEESSBCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHhC--CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCccHHH
Confidence            45777777888887766655443  578999999999998554       2355555554   78999999999999885


Q ss_pred             HH-HhcCCCCcEEeecCceeEE
Q 027632          197 FL-LSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       197 ~I-laAGdkgkR~AlPnS~~MI  217 (221)
                      +. .++||  .+++.|+|.+-+
T Consensus       208 a~~a~~~D--~via~~~A~i~v  227 (304)
T 2f9y_B          208 ASFAMLGD--LNIAEPKALIGF  227 (304)
T ss_dssp             TTGGGCCS--EEEECTTCBEES
T ss_pred             HHHHhcCC--EEEEeCCcEEEe
Confidence            65 55677  789999998753

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=96.24  E-value=0.011  Score=50.99  Aligned_cols=95  Identities=16%  Similarity=0.091  Sum_probs=68.6

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH------------HHH-HHHHH-H--h
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------GMA-IFDTI-R--H  178 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a------------Gla-IYDtm-r--~  178 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=    =|.|+++..            ... +++.| .  .
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~  100 (265)
T 3rsi_A           21 ILTMNRPHRRNALSTNMVSQFAAAWDEIDHDDGIRAAILTGAGSAYCVGGDLSDGWMVRDGSAPPLDPATIGKGLLLSHT  100 (265)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC--------------CCCHHHHHHHTTSSCC
T ss_pred             EEEEcCcccccCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCCCcccccchHHHHHHhHHHHHHHHHHhcC
Confidence            4666654     78888999999888888765555444421    233444420            012 67777 7  7


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  140 (265)
T 3rsi_A          101 LTKPLIAAVNGACLGGGCEMLQQTD--IRVSDEHATFGLPEV  140 (265)
T ss_dssp             CSSCEEEEECSCEETHHHHHHTTCS--EEEEETTCEEECGGG
T ss_pred             CCCCEEEEECCeeeHHHHHHHHHCC--EEEecCCCEEECchh
Confidence            8899999999999999999999998  899999999876543

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=96.22  E-value=0.0098  Score=56.95  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=69.5

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.++.+..-+..-+.  ..-||..++||||          |.+.++-.+.+.+...+.|+.+++.|-+++.|++.
T Consensus       339 G~l~~~~~~K~ar~i~~a~~--~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~~~  416 (522)
T 1x0u_A          339 GSIDIDAADKAARFIRFCDA--FNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAHIA  416 (522)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHhh--CCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHHHH
Confidence            66788777777655554333  3579999999999          77888899999999999999999999999999988


Q ss_pred             Hhc----CCCCcEEeecCceeE
Q 027632          199 LSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laA----GdkgkR~AlPnS~~M  216 (221)
                      .+.    +|  ..++.|++.+-
T Consensus       417 ~a~~a~~~D--~v~a~p~A~i~  436 (522)
T 1x0u_A          417 MSIKSLGAD--LVYAWPTAEIA  436 (522)
T ss_dssp             TCCGGGTCS--EEEECTTCEEE
T ss_pred             hcccccCCC--EEEEeCCCEEE
Confidence            877    66  68999998764

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=96.21  E-value=0.0028  Score=54.72  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=71.5

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHH--------------HHHHHHHHhcC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAG--------------MAIFDTIRHIR  180 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aG--------------laIYDtmr~i~  180 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.    .=|.|+++..-              ..++..|..++
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~   98 (265)
T 3qxz_A           19 VLTLHGPSTRNSFTVELGRQLGAAYQRLDDDPAVRVIVLTGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAFELR   98 (265)
T ss_dssp             EEEEECGGGTSCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBCSTTCTTCCCCCCSSCCCSCCSSSCGGGSS
T ss_pred             EEEEcCCccCCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCccccCcChHHHhhccchhHHHHHHHHHHHHHHHhCC
Confidence            4555543     7788899999988888876655655553    23456665331              23456688889


Q ss_pred             CCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          181 PDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       181 ~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        99 kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  136 (265)
T 3qxz_A           99 TPVIAAVNGHAIGIGMTLALHAD--IRILAEEGRYAIPQV  136 (265)
T ss_dssp             SCEEEEECSEEETHHHHHHTTSS--EEEEETTCCEECCGG
T ss_pred             CCEEEEECCEEehHhHHHHHHCC--EEEEcCCCEEECccc
Confidence            99999999999999999999998  899999999876553

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=96.16  E-value=0.0033  Score=54.52  Aligned_cols=93  Identities=18%  Similarity=0.212  Sum_probs=65.8

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHH---------------------HHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA---------------------IFDTIR  177 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGla---------------------IYDtmr  177 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|  .+-|+...+|.-                     +++.|.
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~  109 (278)
T 4f47_A           32 IVTMNRPSRRNALSGEMMQIMVEAWDRVDNDPDIRCCIL--TGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALL  109 (278)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCCC----------------------CTTCBTTTT
T ss_pred             EEEEcCCCccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE--ECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHH
Confidence            4666543     678888899888888887655554444  333333333321                     233445


Q ss_pred             ---hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          178 ---HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       178 ---~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                         .+++||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       110 ~~~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  153 (278)
T 4f47_A          110 KGRRLKKPLIAAVEGPAIAGGTEILQGTD--IRVAAESAKFGISEA  153 (278)
T ss_dssp             BSCCCSSCEEEEECSEEETHHHHHHTTCS--EEEEETTCEEECCGG
T ss_pred             HhcCCCCCEEEEECCEEehHHHHHHHhCC--EEEEcCCCEEECccc
Confidence               67889999999999999999999998  899999999876543

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=96.13  E-value=0.018  Score=50.59  Aligned_cols=93  Identities=14%  Similarity=0.030  Sum_probs=69.7

Q ss_pred             EEEEcC----ccChhHHHHHHHHHhcccccCCCCceEEEEeCC----CC-CHHH------------------HHHHHHHH
Q 027632          124 IIRCGG----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP----GG-SVTA------------------GMAIFDTI  176 (221)
Q Consensus       124 IIfL~G----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP----GG-sV~a------------------GlaIYDtm  176 (221)
                      +|.|+.    .++.++...+.+.|..++.++..+-|.|.=+.+    || ++..                  ...++..|
T Consensus        20 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l   99 (289)
T 3h0u_A           20 SATFNAPPMNLIGPEVVRDLVALLEELAHPTAPRVVIFDSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKL   99 (289)
T ss_dssp             EEEECCTTTCCBCHHHHHHHHHHHHHTTSTTSCSEEEEEECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHH
Confidence            355544    377788888888888887665566666654433    34 6421                  23467788


Q ss_pred             HhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecC-ceeEEe
Q 027632          177 RHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA-WFLLVI  218 (221)
Q Consensus       177 r~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn-S~~MIh  218 (221)
                      ..+++||.+.+.|.|.+.|.-|++++|  -|++.++ +.|-+-
T Consensus       100 ~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~~a~f~~p  140 (289)
T 3h0u_A          100 SQLPAVTIAKLRGRARGAGSEFLLACD--MRFASRENAILGQP  140 (289)
T ss_dssp             HTCSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECT
T ss_pred             HhCCCCEEEEECCEeehhhHHHHHhCC--EEEEeCCCcEEeCc
Confidence            899999999999999999999999998  8999998 888653

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=96.09  E-value=0.0078  Score=52.19  Aligned_cols=85  Identities=9%  Similarity=0.025  Sum_probs=65.3

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH----------------HHHHHHHHHhcCCCeEEEEcc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA----------------GMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a----------------GlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      .++.++...+.+.|..++.++..+-|.|.=+    |.|+++..                ...+++.|..+++||.+.+.|
T Consensus        47 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  126 (263)
T 2j5g_A           47 VFTGKTHREFPDAFYDISRDRDNRVVILTGSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAVNG  126 (263)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            4678888888888888887665666665533    66776531                124567778889999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|. +|.-|++++|  -|++.+++.|.+
T Consensus       127 ~a~-GG~~LalacD--~ria~~~a~f~~  151 (263)
T 2j5g_A          127 AAL-LHSEYILTTD--IILASENTVFQD  151 (263)
T ss_dssp             EEC-SCGGGGGGCS--EEEEETTCEECC
T ss_pred             cch-HHHHHHHhCC--EEEEcCCCEEec
Confidence            999 6888999998  899999998754

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=96.06  E-value=0.041  Score=47.79  Aligned_cols=95  Identities=14%  Similarity=0.052  Sum_probs=69.2

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH--------------------HHHHHH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------GMAIFD  174 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a--------------------GlaIYD  174 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=.    |-|+++..                    ...++.
T Consensus        32 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (279)
T 3t3w_A           32 TITLNRPEAANAQNPELLDELDAAWTRAAEDNDVSVIVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSL  111 (279)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHH
Confidence            4566543     778888899988888887654554444322    33455421                    123456


Q ss_pred             HHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          175 TIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       175 tmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       112 ~l~~~~kPvIAav~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  155 (279)
T 3t3w_A          112 RWRNVPKPSIAAVQGRCISGGLLLCWPCD--LIIAAEDALFSDPVV  155 (279)
T ss_dssp             HHHHCSSCEEEEECSEEEGGGHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             HHHhCCCCEEEEECCeEhHHHHHHHHhCC--EEEecCCCEEeCcHH
Confidence            77889999999999999999999999998  899999999876543

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=96.05  E-value=0.033  Score=47.69  Aligned_cols=94  Identities=10%  Similarity=0.025  Sum_probs=68.0

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH---------------HHHHHHHHHhc
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA---------------GMAIFDTIRHI  179 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a---------------GlaIYDtmr~i  179 (221)
                      +|.|+.+     ++.++...+.+.|..++. +..+-|.|.=.    |-|+++..               ...++..|..+
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~-~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~   97 (254)
T 3isa_A           19 TFTLSRPEKRNALSAELVEALIDGVDAAHR-EQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGS   97 (254)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHH-TTCSEEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHhhc-CCcEEEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhC
Confidence            4556544     778888888888887765 43443433211    23444321               23467788888


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus        98 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  136 (254)
T 3isa_A           98 PSLTLALAHGRNFGAGVDLFAACK--WRYCTPEAGFRMPGL  136 (254)
T ss_dssp             SSEEEEEECSEEETHHHHHHHHSS--EEEECTTCEEECCGG
T ss_pred             CCCEEEEECCeEeecchhHHHhCC--EEEEcCCCEEECchh
Confidence            999999999999999999999998  799999999876554

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=96.04  E-value=0.021  Score=54.79  Aligned_cols=84  Identities=18%  Similarity=0.242  Sum_probs=65.6

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.+.....-+...+.  ..-||..++|+||          |...++-.+.+.+...+.|+.|++.|-|+|.|++.
T Consensus       344 G~~~~~~~~Kaar~i~~a~~--~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~a  421 (527)
T 1vrg_A          344 GVLDIDSSDKAARFIRFLDA--FNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYIA  421 (527)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh--cCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            56777766666544433333  3689999999999          55677778888999999999999999999998887


Q ss_pred             Hhc----CCCCcEEeecCceeE
Q 027632          199 LSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laA----GdkgkR~AlPnS~~M  216 (221)
                      +++    ++  ..+++||+.+=
T Consensus       422 m~~~~~~~d--~~~a~p~a~~~  441 (527)
T 1vrg_A          422 MGSKHLGAD--MVLAWPSAEIA  441 (527)
T ss_dssp             TTCGGGTCS--EEEECTTCEEE
T ss_pred             hcCCCCCCC--EEEEcCCCeEE
Confidence            776    44  78999999863

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=96.02  E-value=0.027  Score=48.37  Aligned_cols=89  Identities=8%  Similarity=-0.000  Sum_probs=66.9

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH-------------HHHHHHHHHhcCCCeEEEEcceec
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA-------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a-------------GlaIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      .++.++...+.+.|..++.++..+-|.|.=    =|-|+++.+             ...++..|..++.||.+.+.|.|.
T Consensus        28 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  107 (258)
T 4fzw_A           28 ALNNALLMQLVNELEAAATDTSISVCVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYAL  107 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCcce
Confidence            377888888888888877655444443321    123455532             236788899999999999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          193 SMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+|.-|++++|  -|++.+++.|-+-++
T Consensus       108 GgG~~lalacD--~ria~~~a~f~~pe~  133 (258)
T 4fzw_A          108 GAGCELALLCD--VVVAGENARFGLPEI  133 (258)
T ss_dssp             THHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             eeeeEeecccc--eEEECCCCEEECccc
Confidence            99999999999  799999999876543

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=95.90  E-value=0.023  Score=49.77  Aligned_cols=88  Identities=17%  Similarity=0.006  Sum_probs=66.5

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHH--------------------HHHHHHHHHhcCCCeE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTA--------------------GMAIFDTIRHIRPDVS  184 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~a--------------------GlaIYDtmr~i~~~V~  184 (221)
                      .++.++...+.+.|..++.++..+-|.|.=.     |-|+++..                    ...++..|..+++||.
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  110 (287)
T 3gkb_A           31 VIGATMMRELRTVLTTLADDSSVRVIVFSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQVTI  110 (287)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSEEE
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCeeEEEEecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            4667778888888887776555555555432     34566532                    1246778889999999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeec-CceeEEee
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFL-AWFLLVIF  219 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlP-nS~~MIh~  219 (221)
                      +.+.|.|.++|.-|++++|  -|++.+ ++.|-+-+
T Consensus       111 AaV~G~a~GgG~~lalacD--~ria~~~~a~f~~pe  144 (287)
T 3gkb_A          111 VKLAGKARGGGAEFVAAAD--MAFAAAETAGLGQIE  144 (287)
T ss_dssp             EEECSEEETHHHHHHHHSS--EEEEETTTCEEECGG
T ss_pred             EEECCeeehHHHHHHHHCC--EEEEeCCCcEEECcc
Confidence            9999999999999999999  799999 99887644

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=95.88  E-value=0.024  Score=54.27  Aligned_cols=84  Identities=12%  Similarity=0.151  Sum_probs=67.0

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.+.....-+...+.  ..-||..++|.||          |-+.++-.+.+.+...+.|+.|++.|-++|.|++.
T Consensus       340 G~~~~~~a~Kaar~i~~~~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~~a  417 (523)
T 1on3_A          340 GCLDINASDKAAEFVNFCDS--FNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYLA  417 (523)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHHH
Confidence            66788766655444433333  3689999999998          66788889999999999999999999999998888


Q ss_pred             Hhc----CCCCcEEeecCceeE
Q 027632          199 LSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laA----GdkgkR~AlPnS~~M  216 (221)
                      ++.    ++  ..+++||+.+=
T Consensus       418 m~~~~~~~d--~~~a~p~a~~~  437 (523)
T 1on3_A          418 MCNRDLGAD--AVYAWPSAEIA  437 (523)
T ss_dssp             TTCGGGTCS--EEEECTTCEEE
T ss_pred             hcccCCCCC--EEEEcCCCeEE
Confidence            776    44  78999999863

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=95.86  E-value=0.065  Score=46.63  Aligned_cols=93  Identities=17%  Similarity=0.135  Sum_probs=66.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH---------------HHHHHHHHHHhc
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT---------------AGMAIFDTIRHI  179 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~---------------aGlaIYDtmr~i  179 (221)
                      +|.|+-+     ++.++...+.+.|..++  +..+-|.|.=+    |-|+++.               ....+++.|..+
T Consensus        28 ~itlnrP~~~Nal~~~~~~~L~~al~~~d--~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  105 (275)
T 3hin_A           28 TIGLNRPKKRNALNDGLMAALKDCLTDIP--DQIRAVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYC  105 (275)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHTSSCC--TTCCEEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHhC--cCceEEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhC
Confidence            4666544     67788888887777663  33343333221    3344542               224567788899


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       106 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  144 (275)
T 3hin_A          106 RVPVIAALKGAVIGGGLELACAAH--IRVAEASAYYALPEG  144 (275)
T ss_dssp             SSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            999999999999999999999999  899999999876543

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=95.82  E-value=0.046  Score=46.16  Aligned_cols=86  Identities=19%  Similarity=0.165  Sum_probs=63.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEE----EEeCCCCCHHH--------------HHHHHHHHHhcCCCeEEEEcceec
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIM----YLNSPGGSVTA--------------GMAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~L----yINSPGGsV~a--------------GlaIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      ++.++.+.+.+.|..++.+  .+-|.|    -.=|-|+++..              ...++..|..++.||.+.+.|.|.
T Consensus        29 l~~~~~~~L~~al~~~~~d--~~~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~  106 (232)
T 3ot6_A           29 ISPDVIIAFNAALDQAEKD--RAIVIVTGQPGILSGGYDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVACPGHAV  106 (232)
T ss_dssp             BCHHHHHHHHHHHHHHHHT--TCEEEEECBTEEEECCBCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEECCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcC--CCEEEEECCCCCccCCcCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEEECCEee
Confidence            6677778887777777643  233333    12345666543              245778888999999999999999


Q ss_pred             hHHHHHHhcCCCCcEEeecC-ceeEEeec
Q 027632          193 SMGAFLLSAGTKGKYLCFLA-WFLLVIFV  220 (221)
Q Consensus       193 SmAa~IlaAGdkgkR~AlPn-S~~MIh~~  220 (221)
                      ++|.-|++++|  -|++.++ +.|-+-++
T Consensus       107 GgG~~lalacD--~ria~~~~a~f~~pe~  133 (232)
T 3ot6_A          107 AKGAFLLLSAD--YRIGVAGPFSIGLNEV  133 (232)
T ss_dssp             THHHHHHTTSS--EEEEECSSCCEECCTT
T ss_pred             hHHHHHHHHCC--EEEEeCCCcEEECccc
Confidence            99999999998  8999997 78765443

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=95.79  E-value=0.026  Score=48.53  Aligned_cols=95  Identities=14%  Similarity=0.125  Sum_probs=69.8

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHHHH---------------HHHHH-Hh
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAGMA---------------IFDTI-RH  178 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aGla---------------IYDtm-r~  178 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.=+    |-|+++..-..               +++.| ..
T Consensus        21 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~  100 (265)
T 3swx_A           21 VIGLNRPAKRNAFDKTMLEELALALGEYETDTDLRAAVLYGEGPLFTAGLDLASVAAEIQGGASLTPEGGINPWQVDGRQ  100 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCHHHHHHHHC--CCCCCTTCCCTTCCSSCC
T ss_pred             EEEECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcChHHHhhcccchhHHHHHHHHHHHHHHHHh
Confidence            4666554     778888899888888887655565555433    33666644222               23345 66


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       101 ~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  140 (265)
T 3swx_A          101 LSKPLLVAVHGKVLTLGIELALAAD--IVIADETATFAQLEV  140 (265)
T ss_dssp             CSSCEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CCCCEEEEEcCeeehHHHHHHHHCC--EEEEcCCCEEECccc
Confidence            7889999999999999999999999  799999999876543

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=95.76  E-value=0.032  Score=53.77  Aligned_cols=84  Identities=14%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.+.....-+...+.  -.-||...+|+||          |-+.++-.+.+++...+.|+.|++.|-+.+.|++.
T Consensus       352 G~l~~~~a~Kaarfi~lcd~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~a  429 (531)
T 3n6r_B          352 GCLDIDSSRKAARFVRFCDA--FEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYVV  429 (531)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhc--cCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhhh
Confidence            67888776555443333333  2589999999999          45778889999999999999999999999999888


Q ss_pred             Hhc----CCCCcEEeecCceeE
Q 027632          199 LSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laA----GdkgkR~AlPnS~~M  216 (221)
                      +++    ++  ..++.||+.+-
T Consensus       430 m~~~~~~~d--~~~awp~A~i~  449 (531)
T 3n6r_B          430 MSSKHLRAD--FNYAWPTAEVA  449 (531)
T ss_dssp             TTCGGGTCS--EEEECTTCEEE
T ss_pred             ccCccCCCC--eEEEcCCceEe
Confidence            775    44  78999999763

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=95.74  E-value=0.025  Score=55.05  Aligned_cols=92  Identities=10%  Similarity=0.065  Sum_probs=71.2

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceec
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAA  192 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAA  192 (221)
                      ++...+|.++.+.+.....-+...+.  ..-||..++|.||          |-..+|-.+.+++...+.|+.||+.|-+.
T Consensus       379 ~~~~~~G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~~  456 (587)
T 1pix_A          379 GSVGIGGKLYRQGLVKMNEFVTLCAR--DRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGT  456 (587)
T ss_dssp             TCCEETTEECHHHHHHHHHHHHHHHH--TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhhc--CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            45557888998876655444433333  3689999999999          66788889999999999999999999999


Q ss_pred             hHHHHHHhc----CCCCcEEeecCceeE
Q 027632          193 SMGAFLLSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       193 SmAa~IlaA----GdkgkR~AlPnS~~M  216 (221)
                      |.|++.+++    +.+...++.||+.+-
T Consensus       457 Ggg~~am~~~~~~~~~d~~~a~p~A~~~  484 (587)
T 1pix_A          457 AAAHYVLGGPQGNDTNAFSIGTAATEIA  484 (587)
T ss_dssp             TTHHHHTTCTTCTTTEEEEEECTTCEEE
T ss_pred             cHHHHHhcCcccCcccceeeeccCCeEe
Confidence            998887775    311367999999863

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=95.69  E-value=0.022  Score=55.25  Aligned_cols=87  Identities=9%  Similarity=-0.031  Sum_probs=67.4

Q ss_pred             cChhHHHHHHHHHhccccc-CCCCceEEEE-----eCCCCCHHH---------------HHHHHHHH----HhcCCCeEE
Q 027632          131 VEDDMANIIVAQLLYLDAV-DPNKDIIMYL-----NSPGGSVTA---------------GMAIFDTI----RHIRPDVST  185 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~-d~~kdI~LyI-----NSPGGsV~a---------------GlaIYDtm----r~i~~~V~T  185 (221)
                      ++.++...+.+.|..++.+ +..+-|.|.=     -|.|+++..               ...+++.|    +.+++||.+
T Consensus        55 Ls~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAGaDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~~~pKPVIA  134 (556)
T 2w3p_A           55 YDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSGANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSRHSGLKFLA  134 (556)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECEECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCCcCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcCCCCEEE
Confidence            5667778888888877766 5566666654     267888743               12355667    888999999


Q ss_pred             EEcceechHHHHHHhcCCCCcEEeecC--ceeEEee
Q 027632          186 VCVGLAASMGAFLLSAGTKGKYLCFLA--WFLLVIF  219 (221)
Q Consensus       186 v~~GlAASmAa~IlaAGdkgkR~AlPn--S~~MIh~  219 (221)
                      .+.|.|.++|.-|+++||  .|++.++  +.|-+-+
T Consensus       135 AVnG~AlGGGleLALACD--~rIAse~~~A~FglPE  168 (556)
T 2w3p_A          135 AVNGACAGGGYELALACD--EIYLVDDRSSSVSLPE  168 (556)
T ss_dssp             EECSEEETHHHHHHHHSS--EEEEECSSSCEEECCH
T ss_pred             EECCeechhhHHHHHhCC--EEEEcCCCCcEEeccc
Confidence            999999999999999999  8999999  8876543

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=95.66  E-value=0.014  Score=49.93  Aligned_cols=88  Identities=6%  Similarity=0.028  Sum_probs=65.1

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEeC----CCCCHHHHH---------------HHHHHH-HhcCCCeEEEEcc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLNS----PGGSVTAGM---------------AIFDTI-RHIRPDVSTVCVG  189 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINS----PGGsV~aGl---------------aIYDtm-r~i~~~V~Tv~~G  189 (221)
                      .++.++...+.+.|..++.++..+-|.|.=+.    -|+++..-.               .+++.| +.+++||.+.+.|
T Consensus        35 al~~~~~~~l~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIAav~G  114 (258)
T 3lao_A           35 AFDSAMLADLALAMGEYERSEESRCAVLFAHGEHFTAGLDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLVVAVQG  114 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCBCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEEEEECS
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCCeecCcCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            36677888888888877766555655554442    256654321               234556 7778999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       115 ~a~GgG~~lalacD--~~ia~~~a~f~~pe  142 (258)
T 3lao_A          115 TCWTAGIELMLNAD--IAVAARGTRFAHLE  142 (258)
T ss_dssp             EEETHHHHHHHTSS--EEEEETTCEEECGG
T ss_pred             EeEhHHHHHHHhCC--EEEEcCCCEEeCcc
Confidence            99999999999998  89999999887644

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=95.62  E-value=0.04  Score=53.05  Aligned_cols=86  Identities=14%  Similarity=0.138  Sum_probs=64.2

Q ss_pred             CccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHH
Q 027632          129 GPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFL  198 (221)
Q Consensus       129 G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~I  198 (221)
                      |.++.+.+.....-+...+.  ..-||...+|+||          |-+..+-.+.+++...+.|+.|++.|-+.+.|++.
T Consensus       346 G~l~~~~a~Kaarfi~~c~~--~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~~a  423 (530)
T 3iav_A          346 GCLDITASEKAARFVRTCDA--FNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYVV  423 (530)
T ss_dssp             GCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHh--cCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHHHH
Confidence            77888876655444433333  2589999999998          55677888999999999999999999999866655


Q ss_pred             HhcC--CCCcEEeecCceeE
Q 027632          199 LSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       199 laAG--dkgkR~AlPnS~~M  216 (221)
                      +++-  .....++.||+.+=
T Consensus       424 m~~~~~~~d~~~awp~a~~~  443 (530)
T 3iav_A          424 MGSKHLGADLNLAWPTAQIA  443 (530)
T ss_dssp             TTCGGGTCSEEEECTTCEEE
T ss_pred             hcCCCCCCCEEEEcCCceEe
Confidence            5430  12478999999763

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=95.56  E-value=0.03  Score=51.70  Aligned_cols=95  Identities=14%  Similarity=0.055  Sum_probs=69.1

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEeC-----CCCCHHHH----------------------HH
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNS-----PGGSVTAG----------------------MA  171 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINS-----PGGsV~aG----------------------la  171 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=..     -||++..-                      ..
T Consensus        54 ~ItLnrP~~~NAl~~~m~~~L~~al~~~~~d~~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (407)
T 3ju1_A           54 VVTLNVEKALNALDLDMVRAMTVQLNLWKKDPLIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYR  133 (407)
T ss_dssp             EEEECCGGGTSCBCHHHHHHHHHHHHHHHHCTTEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHH
Confidence            4666554     6788888898888888765444444443332     26665321                      12


Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++..|..+++||.+.+.|.|.++|.-|+++||  -|++.+++.|-+-++
T Consensus       134 l~~~i~~~~kPvIAaVnG~a~GgG~~LalacD--~ria~~~a~f~~pe~  180 (407)
T 3ju1_A          134 LDYLLHTYGKPVLVWGDGIVMGGGLGLMAGAS--HKVVTETSRIAMPEV  180 (407)
T ss_dssp             HHHHHHTCSSCEEEECCSEEETHHHHHHHHCS--EEEECTTCEEECGGG
T ss_pred             HHHHHHHCCCCEEEEECCccccCcchHHhcCC--EEEEcCCCEEeChHh
Confidence            45667888999999999999999999999998  799999998866543

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=95.43  E-value=0.01  Score=52.31  Aligned_cols=95  Identities=14%  Similarity=0.051  Sum_probs=64.5

Q ss_pred             EEEEcC-----ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHHH-----------------------HH
Q 027632          124 IIRCGG-----PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTAG-----------------------MA  171 (221)
Q Consensus       124 IIfL~G-----~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~aG-----------------------la  171 (221)
                      +|.|+.     .++.++...+.+.|..++.++..+-|.|.=.    |-|+++..-                       ..
T Consensus        42 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (298)
T 3qre_A           42 IITFNRADRLNAWGPDLAAGFYAAIDRAEADPGIRVIVLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGER  121 (298)
T ss_dssp             EEEECCGGGTTCCCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSEECC-----------------------------C
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHH
Confidence            355554     3677788888888887776554554444311    233443221                       11


Q ss_pred             HHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          172 IFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       172 IYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++..|+.++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       122 ~~~~l~~~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  168 (298)
T 3qre_A          122 PPHFVTMLRKPVIAAINGPCVGIGLTQALMCD--VRFAAAGAKFAAVFA  168 (298)
T ss_dssp             CTTGGGGSSSCEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECCCC
T ss_pred             HHHHHHhCCCCEEEEECCceeecchHHHhhCC--EEEEcCCCEEECccc
Confidence            23346677899999999999999999999999  899999999876543

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=95.42  E-value=0.042  Score=53.55  Aligned_cols=94  Identities=10%  Similarity=0.069  Sum_probs=70.9

Q ss_pred             CCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcce
Q 027632          121 QHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       121 ~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++++..++|.++.+.+.....-+...+..  +-||...+|.||          |-+.+|-.+..++...+.|+.||+.|-
T Consensus       379 ~~~~~~~~G~l~~~~a~Kaarfi~lcd~f--~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~  456 (588)
T 3gf3_A          379 KQNSVGIGGKLYRQGLIKMNEFVTLCARD--RIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRK  456 (588)
T ss_dssp             SSSCEEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSE
T ss_pred             hhhhhccCCCcCHHHHHHHHHHHHHhhhc--CCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            34566778899998766554433333332  579999999998          667888999999999999999999999


Q ss_pred             echHHHHHHhc---CC-CCcEEeecCceeE
Q 027632          191 AASMGAFLLSA---GT-KGKYLCFLAWFLL  216 (221)
Q Consensus       191 AASmAa~IlaA---Gd-kgkR~AlPnS~~M  216 (221)
                      +.+.|++.+++   ++ ....++.||+.+=
T Consensus       457 ~~Ggg~~am~~~~~~~~~~~~~awp~A~~s  486 (588)
T 3gf3_A          457 ASAAAHYVLGGPQGNNTNVFSIGTGACEYY  486 (588)
T ss_dssp             EETTHHHHTTCTTCTTTEEEEEECTTCEEE
T ss_pred             ccHHHHHHhcccccCCccceEEECCCceEE
Confidence            99987776664   22 1256889999763

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=95.41  E-value=0.018  Score=49.67  Aligned_cols=95  Identities=14%  Similarity=0.047  Sum_probs=66.9

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHHH----------------------H
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGMA----------------------I  172 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGla----------------------I  172 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.    .=|-|+++..-..                      +
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (274)
T 3tlf_A           23 TITLNRPDALNALSPHMITELRAAYHEAENDDRVWLLVVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEG  102 (274)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECCBC--------------CTTCSGGGGSCCCTT
T ss_pred             EEEECCccccCCCCHHHHHHHHHHHHHHhcCCCeEEEEEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHH
Confidence            3555443     6778888888888888776555555543    2345666543221                      2


Q ss_pred             HHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          173 FDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       173 YDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +..|..++.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       103 ~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~  148 (274)
T 3tlf_A          103 TPPFRTMAKPVLTAVNGICCGAGMDWVTTTD--IVIASEQATFFDPHV  148 (274)
T ss_dssp             CCCTTSCCSCEEEEECSEEEGGGHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             HHHHHhCCCCEEEEECCeeehHHHHHHHhCC--EEEEcCCCEEECccc
Confidence            3346667789999999999999999999999  899999999876554

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=95.36  E-value=0.077  Score=47.94  Aligned_cols=88  Identities=14%  Similarity=0.069  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEe-----CCCCCHHHH------------------HHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-----SPGGSVTAG------------------MAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-----SPGGsV~aG------------------laIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++...+.+.|..++.++..+-|.|.=+     |-||++..-                  ..++..|..+++||.+.+
T Consensus        30 l~~~m~~~L~~al~~~~~d~~vr~vVltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  109 (363)
T 3bpt_A           30 LTLNMIRQIYPQLKKWEQDPETFLIIIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVALI  109 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            566777777777777766544444444322     235565321                  134567788899999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       110 ~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  140 (363)
T 3bpt_A          110 HGITMGGGVGLSVHGQ--FRVATEKCLFAMPET  140 (363)
T ss_dssp             CSEEETHHHHTTTTSS--EEEECTTCEEECCGG
T ss_pred             CCEEehHHHHHHHhCC--EEEEcCCeEEeCCcc
Confidence            9999999999999998  899999999876554

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=95.30  E-value=0.11  Score=45.67  Aligned_cols=89  Identities=10%  Similarity=-0.002  Sum_probs=62.6

Q ss_pred             ccChhHHHHHHHHHhccccc-----CCCCceEEEEe----CCCCCHHHHH----------------HHHHHHHh------
Q 027632          130 PVEDDMANIIVAQLLYLDAV-----DPNKDIIMYLN----SPGGSVTAGM----------------AIFDTIRH------  178 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~-----d~~kdI~LyIN----SPGGsV~aGl----------------aIYDtmr~------  178 (221)
                      .++.++...+.+.|..++.+     +..+-|.|.=.    |-||++..-.                .+++.++.      
T Consensus        59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  138 (305)
T 3m6n_A           59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPHVVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGLG  138 (305)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHTCSSCEEEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence            48899999999988888763     33443333211    3355653211                23444443      


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +++||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       139 ~~kPvIAaV~G~a~GgG~~LalacD--~ria~~~a~f~~pe~  178 (305)
T 3m6n_A          139 ARAHSIALVQGNALGGGFEAALSCH--TIIAEEGVMMGLPEV  178 (305)
T ss_dssp             TTCEEEEEECSCEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             CCCCEEEEECCEeehHHHHHHHhCC--EEEEcCCCEEECchh
Confidence            4789999999999999999999998  799999999876443

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=95.25  E-value=0.058  Score=46.68  Aligned_cols=50  Identities=8%  Similarity=-0.122  Sum_probs=43.8

Q ss_pred             HHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          169 GMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       169 GlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ...++..|..++.||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus        89 ~~~~~~~l~~~~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  138 (267)
T 3hp0_A           89 LYDLWMKLQTGPYVTISHVRGKVNAGGLGFVSATD--IAIADQTASFSLSEL  138 (267)
T ss_dssp             HHHHHHHHHHSSSEEEEEECSEEETTHHHHHHHSS--EEEECTTCEEECCGG
T ss_pred             HHHHHHHHHcCCCCEEEEECCEEeehHHHHHHhCC--EEEEcCCCEEECchh
Confidence            34577788889999999999999999999999998  899999999876543

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=95.05  E-value=0.046  Score=47.18  Aligned_cols=95  Identities=13%  Similarity=-0.002  Sum_probs=68.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE-----eCCCCCHHHHHH----------HH--HH--HHhc
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL-----NSPGGSVTAGMA----------IF--DT--IRHI  179 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI-----NSPGGsV~aGla----------IY--Dt--mr~i  179 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=     =|.|+++..-..          .+  ..  +..+
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (267)
T 3r9t_A           21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVLTGAGDKSFCAGADLKAIARRENLYHPDHPEWGFAGYVRHFI  100 (267)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECCBCHHHHHTTCCCSCTTCGGGCGGGTTTCCC
T ss_pred             EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceeCCcChHHHhcccchhhHHHHhHHHHHHHHHhC
Confidence            4667665     77888889988888888766566666632     344667654211          00  11  1256


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       101 ~kPvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  139 (267)
T 3r9t_A          101 DKPTIAAVNGTALGGGTELALASD--LVVADERAQFGLPEV  139 (267)
T ss_dssp             SSCEEEEECSEECTHHHHHHHHSS--EEEEETTCEECCGGG
T ss_pred             CCCEEEEECCEEEhHHHHHHHhCC--EEEEcCCCEEECccc
Confidence            789999999999999999999999  799999998865443

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=94.83  E-value=0.019  Score=49.52  Aligned_cols=94  Identities=16%  Similarity=0.051  Sum_probs=66.3

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHHHH-------------HHHHHHHhcCC
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTAGM-------------AIFDTIRHIRP  181 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~aGl-------------aIYDtmr~i~~  181 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..-.             .++..+..++.
T Consensus        23 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~k  102 (262)
T 3r9q_A           23 TVILNRPHARNAVDGPTAAALLAAFTEFDADPEASVAVLWGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSK  102 (262)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSS
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCC
Confidence            4666554     77888888988888888765555554432    23344442211             12234456778


Q ss_pred             CeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          182 DVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       182 ~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ||.+.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus       103 PvIAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe  138 (262)
T 3r9q_A          103 PVIAAISGHAVAGGIELALWCD--LRVVEEDAVLGVFC  138 (262)
T ss_dssp             CEEEEECSEEETHHHHHHHHSS--EEEEETTCEEECTH
T ss_pred             CEEEEECCeeehhhhHHHHhCC--EEEEeCCCEEecch
Confidence            9999999999999999999998  89999999886543

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=94.77  E-value=0.12  Score=48.68  Aligned_cols=95  Identities=13%  Similarity=-0.016  Sum_probs=67.1

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEEEe-------------CCCCCHHHHH---------------
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMYLN-------------SPGGSVTAGM---------------  170 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN-------------SPGGsV~aGl---------------  170 (221)
                      +|.|+-+     ++.++...+.+.|..++.++..+-|.|.=+             |-|+++..-.               
T Consensus       179 ~ItLNRP~k~NALs~~m~~eL~~al~~~~~D~~VRvVVLtG~~~~~p~~aG~~~FcAG~DL~~~~~~~~~~~~~~~~~~~  258 (440)
T 2np9_A          179 RLTMCRDDRLNAEDGQQVDDMETAVDLALLDPGVRVGLLRGGVMSHPRYRGKRVFSAGINLKYLSQGGISLVDFLMRREL  258 (440)
T ss_dssp             EEEECCTTTTTCBCHHHHHHHHHHHHHHHHCTTCSEEEEEECBCCSTTTTTCBCCBCCBCHHHHHTTCCCTTTTHHHHHH
T ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCccccccCCCccccCCcchhhhhccCcchhhhhhHHHH
Confidence            3556433     677888888888888877655565555542             3345553311               


Q ss_pred             -HHHHHHH---------------hcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          171 -AIFDTIR---------------HIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       171 -aIYDtmr---------------~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                       .+.+.++               .+++||.+.+.|.|.++|.-|++++|  -|++.+++.|-+-++
T Consensus       259 ~~~~~~~~~l~~~~~~~~~~~~~~~pkPvIAAVnG~A~GGG~eLALaCD--irIAae~A~Fglpev  322 (440)
T 2np9_A          259 GYIHKLVRGVLTNDDRPGWWHSPRIEKPWVAAVDGFAIGGGAQLLLVFD--RVLASSDAYFSLPAA  322 (440)
T ss_dssp             THHHHHHHCEECCSCSTTTTTCCEECCCEEEEECSEEETHHHHHGGGCS--EEEEETTCEEECCCT
T ss_pred             HHHHHHHHHHHhhcccchhhhhhcCCCCEEEEECCcccccchHHHhhCC--EEEEcCCCEEECchh
Confidence             0122222               46789999999999999999999999  799999999877654

>3qxi_A Enoyl-COA hydratase ECHA1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.20A {Mycobacterium marinum}

Probab=94.69  E-value=0.059  Score=46.44  Aligned_cols=94  Identities=18%  Similarity=0.059  Sum_probs=62.7

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHHH----------H-HHHHHhcCCCe
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGMA----------I-FDTIRHIRPDV  183 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGla----------I-YDtmr~i~~~V  183 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.    .=|-|+++..-..          + +..+.. +.||
T Consensus        27 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~-~kPv  105 (265)
T 3qxi_A           27 IITINRPKAKNSVNAAVSRALADAMDRLDADAGLSVGILTGAGGSFCAGMDLKAFARGENVVVEGRGLGFTERPP-AKPL  105 (265)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTCCCCSBC-------CCCEETTTEETTTTSCC-SSCE
T ss_pred             EEEECCCCcCCCCCHHHHHHHHHHHHHHHhCCCcEEEEEECCCCCeeCCCChhhhhccchhhhhhhhhhHHHhhC-CCCE
Confidence            4666543     7788888888888888775545544443    1244555543111          0 111222 6799


Q ss_pred             EEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          184 STVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       184 ~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+.+.|.|.+.|.-|++++|  -|++.+++.|-+-++
T Consensus       106 IAav~G~a~GgG~~lalacD--~ria~~~a~f~~pe~  140 (265)
T 3qxi_A          106 IAAVEGYALAGGTELALATD--LIVAARDSAFGIPEV  140 (265)
T ss_dssp             EEEECSEEETHHHHHHHHSS--EEEEETTCEEECGGG
T ss_pred             EEEECCceeHHHHHHHHhCC--EEEEcCCCEEECccc
Confidence            99999999999999999999  899999998876543

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=94.68  E-value=0.036  Score=47.57  Aligned_cols=93  Identities=16%  Similarity=0.068  Sum_probs=65.4

Q ss_pred             EEEEcCc-----cChhHHHHHHHHHhcccccCCCCceEEE----EeCCCCCHHHHHH----------HHHHHHhcCCCeE
Q 027632          124 IIRCGGP-----VEDDMANIIVAQLLYLDAVDPNKDIIMY----LNSPGGSVTAGMA----------IFDTIRHIRPDVS  184 (221)
Q Consensus       124 IIfL~G~-----Idd~~A~~IiaqLl~Lds~d~~kdI~Ly----INSPGGsV~aGla----------IYDtmr~i~~~V~  184 (221)
                      +|.|+.+     ++.++...+.+.|..++.++..+-|.|.    .=|-|+++..-..          -+..+ .++.||.
T Consensus        19 ~itlnrp~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvI   97 (256)
T 3trr_A           19 LITINRPDARNAVNRAVSQGLAAAADQLDSSADLSVAIITGAGGNFCAGMDLKAFVSGEAVLSERGLGFTNV-PPRKPII   97 (256)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEEEEGGGCCCCCBCHHHHHHTCCCEETTEETTSSS-CCSSCEE
T ss_pred             EEEEcCCCcCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCceecCcCHHHhccccchhhhhhhhHHHh-cCCCCEE
Confidence            4555543     6677888888888888776555555543    2355666644221          01223 5678999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.+.|.|.+.|.-|++++|  -|++.+++.|-+-+
T Consensus        98 Aav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe  130 (256)
T 3trr_A           98 AAVEGFALAGGTELVLSCD--LVVAGRSAKFGIPE  130 (256)
T ss_dssp             EEECSBCCTHHHHHHHTSS--EEEEETTCEECCCG
T ss_pred             EEECCeeeechhHHHHhCC--EEEECCCCEEEehh
Confidence            9999999999999999999  79999999886544

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=94.33  E-value=0.14  Score=50.20  Aligned_cols=88  Identities=15%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHH------------------HHHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVT------------------AGMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~------------------aGlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++.                  ....+++.|..++.||.+.+.
T Consensus        32 l~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  111 (715)
T 1wdk_A           32 FNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAIN  111 (715)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCeEeCCcCHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            45666677777777666554444444431    12233332                  123566778888999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.|.+.|.-|+++||  .|++.+++.|-+-+|
T Consensus       112 G~a~GgG~elalacD--~ria~~~a~fglpev  141 (715)
T 1wdk_A          112 GIALGGGLEMCLAAD--FRVMADSAKIGLPEV  141 (715)
T ss_dssp             SCEETHHHHHHHTSS--EEEEETTCEEECGGG
T ss_pred             CEeeHHHHHHHHHCC--EEEEeCCCEEeChhh
Confidence            999999999999998  899999998865443

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=94.03  E-value=0.12  Score=51.24  Aligned_cols=93  Identities=17%  Similarity=0.096  Sum_probs=70.9

Q ss_pred             EEEEcCc----cChhHHHHHHHHHhcccccCCCCceEEEEeCCC------CCH---------HHHHHHHHHHHhcCCCeE
Q 027632          124 IIRCGGP----VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSV---------TAGMAIFDTIRHIRPDVS  184 (221)
Q Consensus       124 IIfL~G~----Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG------GsV---------~aGlaIYDtmr~i~~~V~  184 (221)
                      +|.|+-+    ++.++...+.+.|..++.++..+-|.|  .+-|      +++         .+...+++.|..++.||.
T Consensus        33 ~itlnrP~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aGaDl~~~~~~~~~~~~~~~~~~i~~~~kPvI  110 (742)
T 3zwc_A           33 MIRLCNPPVNAVSPTVIREVRNGLQKAGSDHTVKAIVI--CGANGNFCAGADIHGFSAFTPGLALGSLVDEIQRYQKPVL  110 (742)
T ss_dssp             EEEECCTTTTCBCHHHHHHHHHHHHHHHTCTTCCEEEE--EESTTCSBCCBCSSSCCSSCSCSHHHHHHHHHHHCSSCEE
T ss_pred             EEEeCCCcccCCCHHHHHHHHHHHHHHhhCCCCeEEEE--ECCCCccccCcChHhhhccChhHHHHHHHHHHHhCCCCEE
Confidence            4666554    778888888888888877655554433  3333      332         234478899999999999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      +.+.|.|.+.|.-|+++||  -|++.+++.|-+-+|
T Consensus       111 Aai~G~a~GGG~elalacD--~ria~~~a~fg~pev  144 (742)
T 3zwc_A          111 AAIQGVALGGGLELALGCH--YRIANAKARVGLPEV  144 (742)
T ss_dssp             EEECSEEETHHHHHHHTSS--EEEEETTCEEECGGG
T ss_pred             EEECccchHHHHHHHHhcC--EEEEcCCCEEECccc
Confidence            9999999999999999999  899999999876443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=93.76  E-value=0.24  Score=47.91  Aligned_cols=87  Identities=13%  Similarity=0.069  Sum_probs=66.2

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      .|.++.+.+.....-+...+..  .-||..++|+||          |-+.++-.+..++...+.|+.||+.|-+.++|++
T Consensus       365 ~G~l~~~~a~Kaarfi~~c~~~--~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~  442 (555)
T 3u9r_B          365 NGILFAEAAQKGAHFIELACQR--GIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNY  442 (555)
T ss_dssp             CSSBCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHH
T ss_pred             CCccCHHHHHHHHHHHHHHhcC--CCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhH
Confidence            4778888776654433333332  579999999999          5577888899999999999999999999998887


Q ss_pred             HHhcC--CCCcEEeecCceeE
Q 027632          198 LLSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAG--dkgkR~AlPnS~~M  216 (221)
                      .+++.  .....++.||+.+-
T Consensus       443 am~~~~~~~d~~~a~p~A~i~  463 (555)
T 3u9r_B          443 GMCGRAYDPRFLWMWPNARIG  463 (555)
T ss_dssp             HTTCGGGCCSEEEECTTCEEE
T ss_pred             hhcCccCCCCeEEEcCCcEEE
Confidence            76631  12378999999764

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=93.63  E-value=0.17  Score=44.87  Aligned_cols=86  Identities=12%  Similarity=0.049  Sum_probs=59.6

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHH-------HHHHHH---hcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMA-------IFDTIR---HIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGla-------IYDtmr---~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|-++...++.+...+..-+..  .-|+..+++|+|....+|..       +...+.   ....|+.+++.|-+.+.++.
T Consensus       134 gGs~g~~~~~K~~r~ie~A~~~--~lPlI~l~dsgGar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~g~~~GG~~a  211 (285)
T 2f9i_B          134 MGSMGSVIGEKICRIIDYCTEN--RLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSA  211 (285)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHT--TCCEEEEEEECSCCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEHHHHT
T ss_pred             cCcCCHHHHHHHHHHHHHHHHc--CCCEEEEEeCCCcchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEeCCccHHHHH
Confidence            4666777777776555433332  57899999999998777643       222333   34579999999999877766


Q ss_pred             HH-hcCCCCcEEeecCceeEE
Q 027632          198 LL-SAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       198 Il-aAGdkgkR~AlPnS~~MI  217 (221)
                      .+ +.||  ..++.|+|.+-+
T Consensus       212 s~a~~~D--~i~a~p~A~i~~  230 (285)
T 2f9i_B          212 SFASVGD--INLSEPKALIGF  230 (285)
T ss_dssp             TGGGCCS--EEEECTTCBEES
T ss_pred             HhhhCCC--EEEEeCCcEEEE
Confidence            64 4455  678999987643

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=92.64  E-value=0.36  Score=48.44  Aligned_cols=95  Identities=9%  Similarity=0.013  Sum_probs=68.7

Q ss_pred             cCCcEEE-EcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEc
Q 027632          120 FQHRIIR-CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       120 ~~~RIIf-L~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~  188 (221)
                      .+++++. .+|.++.+.+.....-+...+. ...-||...+|.||          |-..+|-.+.+++...+.|+.|++.
T Consensus       437 ~~e~~~~~~gG~l~pe~a~KaArfI~lcd~-~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itVI~  515 (758)
T 3k8x_A          437 SAETLIQEPGQVWHPNSAFKTAQAINDFNN-GEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIP  515 (758)
T ss_dssp             CCCEEEEECTTEECHHHHHHHHHHHHHHHH-TSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred             hhhhHHhhcCCCCCHHHHHHHHHHHHHhhh-ccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEEEe
Confidence            3455544 4699999877766533333333 13579999999998          6678899999999999999999999


Q ss_pred             --ceechHHHHHHhc----CCCCcEEeecCceeE
Q 027632          189 --GLAASMGAFLLSA----GTKGKYLCFLAWFLL  216 (221)
Q Consensus       189 --GlAASmAa~IlaA----GdkgkR~AlPnS~~M  216 (221)
                        |-+.+.|. +.++    ++....+|.|||.+-
T Consensus       516 RkGe~~GGA~-~am~~~~~ad~~~v~Awp~A~is  548 (758)
T 3k8x_A          516 PTGELRGGSW-VVVDPTINADQMEMYADVNARAG  548 (758)
T ss_dssp             TTCEEETHHH-HTTCGGGSTTTEEEEEETTCEEE
T ss_pred             cCCccchHHH-HHhCcccCCCHHHHhcCCCCEEE
Confidence              99877555 4444    331128999999764

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=92.53  E-value=0.35  Score=48.79  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=69.6

Q ss_pred             cCCcEEE-EcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEE-
Q 027632          120 FQHRIIR-CGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVC-  187 (221)
Q Consensus       120 ~~~RIIf-L~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~-  187 (221)
                      .++++.. ++|.++.+.+.....-+...+.  ..-||...+|.||          |-+.+|-.+.+++...+.|+.|++ 
T Consensus       452 ~~e~~~~~~gG~l~~~~a~KaarfI~~cd~--f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI~  529 (793)
T 2x24_A          452 SEAKIIQQAGQVWFPDSAYKTAQAIKDFNR--EKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYIP  529 (793)
T ss_dssp             CCCEEEEECTTEECHHHHHHHHHHHHHHHT--TTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEEC
T ss_pred             hhhhhhhhcCCcccHHHHHHHHHHHHHhcc--CCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            3455554 4789999987766554444443  3689999999999          667889999999999999999999 


Q ss_pred             -cceechHHHHHHhcCCCC-c---EEeecCceeE
Q 027632          188 -VGLAASMGAFLLSAGTKG-K---YLCFLAWFLL  216 (221)
Q Consensus       188 -~GlAASmAa~IlaAGdkg-k---R~AlPnS~~M  216 (221)
                       .|-+.+ |++++++..-+ .   .+|.|++.+-
T Consensus       530 r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~  562 (793)
T 2x24_A          530 PYAEVRG-GSWAVMDTSINPLCIEMYADRESRAS  562 (793)
T ss_dssp             TTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEE
T ss_pred             cCCcccc-hhHHhhhcccCccHHHHhhhccCEEE
Confidence             888765 66666642222 2   4899999863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=91.60  E-value=0.11  Score=51.15  Aligned_cols=88  Identities=18%  Similarity=-0.009  Sum_probs=57.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH------------------HHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a------------------GlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++...+.+.|..++.++..+-|.|.=    =|-|+++..                  ...+++.|..++.||.+.+.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltgg~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  110 (725)
T 2wtb_A           31 LSFDVLYNLKSNYEEALSRNDVKAIVITGAKGRFSGGFDISGFGEMQKGNVKEPKAGYISIDIITDLLEAARKPSVAAID  110 (725)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCCEEEEEESSSCCBCSSCC------------CCSSSHHHHHCCCCCCCTSSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCcccCCcCHHHHhcccchhhhhHHHHHHHHHHHHHHHHhCcCcEEEEEC
Confidence            55566666766666666544344443331    133344321                  11223345556789999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |.|.+.|.-|+++||  .|++.+++.|-+-+|
T Consensus       111 G~a~GgG~elalacD--~ria~~~a~fglpev  140 (725)
T 2wtb_A          111 GLALGGGLELAMACH--ARISAPAAQLGLPEL  140 (725)
T ss_dssp             SEEETHHHHHHHHSS--EEEECTTCEEECCGG
T ss_pred             CccCcccHHHHHhCC--EEEEcCCCEEeCchh
Confidence            999999999999998  899999998765443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	221
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	2e-37
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	1e-29
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	4e-29
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	3e-27
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	6e-21

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  126 bits (319), Expect = 2e-37
 Identities = 58/96 (60%), Positives = 79/96 (82%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + R+I   G VED MAN+IVAQ+L+L+A +P KDI +Y+NSPGG +TAGM
Sbjct: 5   RSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGM 64

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           +I+DT++ I+PDVST+C+G AASMGAFLL+AG KGK
Sbjct: 65  SIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGK 100

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  106 bits (266), Expect = 1e-29
 Identities = 50/93 (53%), Positives = 68/93 (73%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V  +L   RII  G  V D++AN + AQ+L L A D +KDI +Y+NSPGGS++AGMAI+
Sbjct: 5   SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIY 64

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           DT+     D++T  +G+AASMG FLL+AGTKGK
Sbjct: 65  DTMVLAPCDIATYAMGMAASMGEFLLAAGTKGK 97

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  105 bits (263), Expect = 4e-29
 Identities = 53/111 (47%), Positives = 75/111 (67%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RII   GPVED+MAN ++AQLL+LDA D  KDI +Y+N+PGGSV+AG+
Sbjct: 13  RSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGL 72

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS 221
           AI DT+  I+ DV T+ +G+AASMG  + S+G KGK         ++    
Sbjct: 73  AIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPM 123

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  100 bits (251), Expect = 3e-27
 Identities = 47/96 (48%), Positives = 70/96 (72%)

Query: 111 RFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM 170
           R  ++ S+L + RI+   GP++D +A++++AQLL+L +    K I MY+NSPGG VTAG+
Sbjct: 15  RAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGL 74

Query: 171 AIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGK 206
           AI+DT+++I   + T CVG AASMG+ LL+AGT G 
Sbjct: 75  AIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGM 110

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 84.4 bits (208), Expect = 6e-21
 Identities = 38/92 (41%), Positives = 59/92 (64%), Gaps = 1/92 (1%)

Query: 114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIF 173
           +V    F+ RII     +    A+ +++QLLYLD ++ N DI +Y+NSPGGS+  G+AI 
Sbjct: 10  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINHN-DIKIYINSPGGSINEGLAIL 68

Query: 174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKG 205
           D   +I+ D+ T+  GL ASM + +L++G KG
Sbjct: 69  DIFNYIKSDIQTISFGLVASMASVILASGKKG 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	221
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	97.11
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	96.78
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	96.63
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	96.62
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	96.57
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	96.49
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	96.43
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	96.43
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	96.17
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	96.09
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	96.07
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	96.01
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	95.97
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.86
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.81
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	95.76
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	95.61
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	95.46
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	95.34
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	94.46
d1szoa_	249	6-oxo camphor hydrolase {Rhodococcus erythropolis	93.72
d1pixa2	287	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	91.0
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	89.18

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=3.7e-38  Score=264.68  Aligned_cols=112  Identities=43%  Similarity=0.687  Sum_probs=107.1

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ||+.||+++||++|||||+|+|||++++.++++|++|+.++++++|+||||||||++++|++|||+|+.++++|+|+|.|
T Consensus        14 ~~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~V~tv~~G   93 (193)
T d1tg6a1          14 ERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVG   93 (193)
T ss_dssp             ---CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSCSCEEEEEEE
T ss_pred             chhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCcccHHHHHHHHHHHHhhcCceEEEEcc
Confidence            46679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeecC
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS  221 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~~  221 (221)
                      +|||||++|++||++|+|+++|||.+|||..+
T Consensus        94 ~aaS~a~~il~aG~~g~R~~~pns~~miHq~~  125 (193)
T d1tg6a1          94 QAASMGSLLLAAGTPGMRHSLPNSRIMIHQPS  125 (193)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCC
T ss_pred             chHHHHHHHhhcCccCccccCcccHHHhcCCc
Confidence            99999999999999999999999999999864

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.4e-37  Score=260.16  Aligned_cols=112  Identities=47%  Similarity=0.746  Sum_probs=107.5

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      |++.||+++||++|||||+|+||+++++.++++|++|+.+++.|+|+||||||||+|++|++|||+|++++.+|+|+|.|
T Consensus        12 ~~~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~GG~v~~glai~d~i~~~~~~v~t~~~G   91 (192)
T d1y7oa1          12 ERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPGGSVSAGLAIVDTMNFIKADVQTIVMG   91 (192)
T ss_dssp             --CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCCCCHHHHHHHHHHHHhcCcceEEEecc
Confidence            45569999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeecC
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS  221 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~~  221 (221)
                      +|||||++|++||++|+|+++|||.+|||..+
T Consensus        92 ~aaS~as~il~aG~~g~R~~~pns~~miHq~~  123 (192)
T d1y7oa1          92 MAASMGTVIASSGAKGKRFMLPNAEYMIHQPM  123 (192)
T ss_dssp             EEETHHHHHHTTSCTTCEEECTTCEEECCCCC
T ss_pred             ccCCccceeeeecCCCccccchHHHHHhhccc
Confidence            99999999999999999999999999999864

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.3e-35  Score=245.02  Aligned_cols=108  Identities=47%  Similarity=0.690  Sum_probs=105.3

Q ss_pred             HHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632          114 NVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       114 di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      +||++|+++|||||+|+||++++++++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.+|+|+|.|+|||
T Consensus         5 ~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~gl~i~d~i~~~~~~v~t~~~G~aaS   84 (179)
T d2cbya1           5 SVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPGGSISAGMAIYDTMVLAPCDIATYAMGMAAS   84 (179)
T ss_dssp             HHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHCSSCEEEEEEEEEET
T ss_pred             HHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCCCCHHHHHHHHHHHHhhccceeeehhhhhhh
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCcEEeecCceeEEeecC
Q 027632          194 MGAFLLSAGTKGKYLCFLAWFLLVIFVS  221 (221)
Q Consensus       194 mAa~IlaAGdkgkR~AlPnS~~MIh~~~  221 (221)
                      ||++|+++|+||+|+++|||.+|||.++
T Consensus        85 ~a~~il~ag~k~~R~~~~~s~~miH~~~  112 (179)
T d2cbya1          85 MGEFLLAAGTKGKRYALPHARILMHQPL  112 (179)
T ss_dssp             HHHHHHHTSCTTCEEECTTCEEECCCC-
T ss_pred             HHHHHHHcCCCCceEECCchHhhcCCCc
Confidence            9999999999999999999999999863

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.1e-35  Score=245.38  Aligned_cols=112  Identities=53%  Similarity=0.885  Sum_probs=108.6

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ||..||+++|+++|||||+|+||+++++.++++|++|+.+++.++|+||||||||+|++|++|||+|+.++.||+|+|.|
T Consensus         4 ~~~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~GG~v~~g~~i~d~i~~~~~~v~tv~~G   83 (183)
T d1yg6a1           4 ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMG   83 (183)
T ss_dssp             CCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCCccHHHHHHHHHHHHhCCCCEEEEEEE
Confidence            56779999999999999999999999999999999999999899999999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeecC
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS  221 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~~  221 (221)
                      .|||||++|++||+|++|+++||+.+|||..+
T Consensus        84 ~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~  115 (183)
T d1yg6a1          84 QAASMGAFLLTAGAKGKRFCLPNSRVMIHQPL  115 (183)
T ss_dssp             EEETHHHHHHHTSCTTCEEECTTCEEEECCCE
T ss_pred             EeHHHHHHHHHcCCCCceeeCCCceEEecccc
Confidence            99999999999999999999999999999863

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=5.4e-34  Score=237.88  Aligned_cols=111  Identities=34%  Similarity=0.594  Sum_probs=105.9

Q ss_pred             cchhHHHHhhcCCcEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          110 GRFQNVLSQLFQHRIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       110 e~~~di~s~L~~~RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      +...|++++||++|||||+|+||+++++.++++|++|+.++ .++|+||||||||+|++|++|||+|+.++.+|+|+|.|
T Consensus         6 ~~~~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~GG~v~~g~ai~d~i~~~~~~v~tv~~G   84 (190)
T d2f6ia1           6 DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGGSINEGLAILDIFNYIKSDIQTISFG   84 (190)
T ss_dssp             CSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECCBCHHHHHHHHHHHHHSSSCEEEEEEE
T ss_pred             cchhhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCchhhhhHHHHHHHHHHhhCCceEEEEec
Confidence            34568999999999999999999999999999999999876 57899999999999999999999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEEeecC
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLVIFVS  221 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MIh~~~  221 (221)
                      .|+|||++|+++|++|+|+++||+.+|||+.+
T Consensus        85 ~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s  116 (190)
T d2f6ia1          85 LVASMASVILASGKKGKRKSLPNCRIMIHQPL  116 (190)
T ss_dssp             EECHHHHHHHHTSCTTCEEECTTCEEESSCTT
T ss_pred             cccchhHHHHHhCCCCccccCCCcEEEEcccc
Confidence            99999999999999999999999999999864

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.0017  Score=53.26  Aligned_cols=86  Identities=16%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC------CCCHHHH--------------------------HHHHHHHHh
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP------GGSVTAG--------------------------MAIFDTIRH  178 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP------GGsV~aG--------------------------laIYDtmr~  178 (221)
                      ++.++...+.+.|..++.++..+-|.|  .+-      ||++..-                          ..+++.|..
T Consensus        28 ls~~m~~el~~~l~~~~~d~~v~~vvl--tg~~~~F~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  105 (275)
T d1dcia_          28 MNRAFWRELVECFQKISKDSDCRAVVV--SGAGKMFTSGIDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFTVIEK  105 (275)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEE--EESTTCSBCCBCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--eccccccccCccHHHhhhcccccccccccchhhhhccchhhhHHHHHHHHh
Confidence            788899999999998886554444333  443      5665432                          246788999


Q ss_pred             cCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          179 IRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       179 i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      ++.||.+.+.|.|.+.|..|++++|  -|++.+++.|-+.++
T Consensus       106 ~~kPvIaav~G~a~GgG~~lal~~D--~ria~~~a~f~~pe~  145 (275)
T d1dcia_         106 CPKPVIAAIHGGCIGGGVDLISACD--IRYCTQDAFFQVKEV  145 (275)
T ss_dssp             SSSCEEEEECSEEETHHHHHHTTSS--EEEEETTCEEECCGG
T ss_pred             cCCCEEEEEeeEeehhhHHHHhhcC--chhhccCccccchhc
Confidence            9999999999999999999999998  899999998876553

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.004  Score=50.16  Aligned_cols=88  Identities=19%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCH------------------HHHHHHHHHHHhcCCCeEEEE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSV------------------TAGMAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV------------------~aGlaIYDtmr~i~~~V~Tv~  187 (221)
                      .++.++.+++...|..++.++..+-|.|.=+    |-||+.                  .....++..|..++.||.+.+
T Consensus        22 al~~~~~~el~~~l~~~~~d~~v~~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  101 (253)
T d1uiya_          22 PLSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVAAV  101 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEEEe
Confidence            3778888888888888876554444433222    124443                  223456677889999999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.|...|..|++++|  -|++.+++.+-+++
T Consensus       102 ~G~a~GgG~~lal~~D--~ria~~~a~~~~~e  131 (253)
T d1uiya_         102 NGPAVAGGAGLALACD--LVVMDEEARLGYTE  131 (253)
T ss_dssp             CSCEETHHHHHHHTSS--EEEEETTCEEECCH
T ss_pred             CeEEehhhHHHHhhhh--hhhhhhhhHHhhhh
Confidence            9999999999999998  89999999987765

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=96.63  E-value=0.0052  Score=50.53  Aligned_cols=88  Identities=16%  Similarity=0.055  Sum_probs=65.8

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHH-----------------HHHHHHHHHHhcCCCeEEEEc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVT-----------------AGMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~-----------------aGlaIYDtmr~i~~~V~Tv~~  188 (221)
                      .++.++.+++.+.+..++.++..+-|.|.=+    |.|+++.                 ....++..|..++.||.+.+.
T Consensus        32 al~~~m~~el~~~~~~~~~d~~vr~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~v~  111 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAAVE  111 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCCeEEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeeecc
Confidence            4667788888888887776554444443322    3456542                 233567778888999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      |.|...|..|++++|  -|++.+++.|-+.+
T Consensus       112 G~a~GgG~~lal~~D--~~ia~~~a~f~~pe  140 (263)
T d1wz8a1         112 KVAVGAGLALALAAD--IAVVGKGTRLLDGH  140 (263)
T ss_dssp             SEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             ccccccccccccccc--cccccccccccccc
Confidence            999999999999998  79999999987654

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.0051  Score=50.57  Aligned_cols=88  Identities=14%  Similarity=0.114  Sum_probs=66.5

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEE-----EeCCCCCH---------------HHHHHHHHHHHhcCCCeEEEEcce
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMY-----LNSPGGSV---------------TAGMAIFDTIRHIRPDVSTVCVGL  190 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~Ly-----INSPGGsV---------------~aGlaIYDtmr~i~~~V~Tv~~Gl  190 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.     .-|.|++.               .....++..|..++.||.+.+.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav~G~  109 (266)
T d1hzda_          30 LSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAIDGL  109 (266)
T ss_dssp             BCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEESEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcceEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCcccccccccc
Confidence            7778888888888887765544444432     12233332               344468888889999999999999


Q ss_pred             echHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          191 AASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       191 AASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      |...|.-|++++|  -|++.+++.|-+-++
T Consensus       110 a~GgG~~lal~~D--~~ia~~~a~f~~pe~  137 (266)
T d1hzda_         110 ALGGGLELALACD--IRVAASSAKMGLVET  137 (266)
T ss_dssp             EETHHHHHHHHSS--EEEEETTCEEECCGG
T ss_pred             cccccceeccccc--eeeecCCcEEeeccc
Confidence            9999999999998  899999999876543

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.0032  Score=54.91  Aligned_cols=63  Identities=21%  Similarity=0.278  Sum_probs=55.4

Q ss_pred             CCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCceeE
Q 027632          152 NKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       152 ~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~M  216 (221)
                      .-||..+|++||          |-..++-.....|-.++.|+.+|+.|-+.|.|++.++.++  +..+++||++=
T Consensus       151 ~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~a~~~~d--~v~m~~~a~~s  223 (316)
T d2f9ya1         151 KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGD--KVNMLQYSTYS  223 (316)
T ss_dssp             TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCS--EEEECTTCEEE
T ss_pred             CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhhhhhhhh--HHHHHhhhHHh
Confidence            579999999999          5567777777788888999999999999999999999887  78999999873

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=96.49  E-value=0.013  Score=47.26  Aligned_cols=85  Identities=9%  Similarity=0.061  Sum_probs=63.7

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCC-------H----------------HHHHHHHHHHHhcCCCeEEEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGS-------V----------------TAGMAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGs-------V----------------~aGlaIYDtmr~i~~~V~Tv~  187 (221)
                      ++.++...+.+.+..++.++..+-  +.|-+-||.       +                .....++..|+.++.||.+.+
T Consensus        24 l~~~~~~~l~~~l~~~~~d~~i~~--vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  101 (230)
T d2a7ka1          24 FSRTLETSVKDALARANADDSVRA--VVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAAV  101 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCE--EEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCcccc--cceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeeec
Confidence            778888888888877775432222  344454432       1                233457788889999999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      .|.|.+.|.-|++++|  .|++.+++.|-+-+
T Consensus       102 ~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe  131 (230)
T d2a7ka1         102 DGYAIGMGFQFALMFD--QRLMASTANFVMPE  131 (230)
T ss_dssp             CSEEETHHHHHHTTSS--EEEEETTCEEECCG
T ss_pred             ccccccccccchhccc--hhhccccchhhhcc
Confidence            9999999999999998  89999999886543

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=96.43  E-value=0.0022  Score=52.86  Aligned_cols=85  Identities=13%  Similarity=0.121  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHH--------------------------HHHHHHHHHhcCCCeE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTA--------------------------GMAIFDTIRHIRPDVS  184 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~a--------------------------GlaIYDtmr~i~~~V~  184 (221)
                      ++.++..+|.+.|..++.++..+-|.|  .+.|+...+                          ...+++.|..++.||.
T Consensus        27 l~~~~~~el~~~l~~~~~d~~i~~vvl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvI  104 (269)
T d1nzya_          27 LSVKAMQEVTDALNRAEEDDSVGAVMI--TGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPVL  104 (269)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--eCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchhe
Confidence            677888888888888886544443333  444433222                          2256677888999999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.+.|.|...|..|++++|  .|++.+++.+.+.+
T Consensus       105 aav~G~a~GgG~~lal~~D--~ria~~~a~~~~~~  137 (269)
T d1nzya_         105 AAINGVAAGGGLGISLASD--MAICADSAKFVCAW  137 (269)
T ss_dssp             EEECSEEETHHHHHHHHSS--EEEEETTCEEECCH
T ss_pred             hhhhhhcCCCceeeeeccc--Hhhhhhhhhhcccc
Confidence            9999999999999999998  89999999887643

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0051  Score=50.06  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH-------------------------HHHHHHHHhcCCCeEE
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-------------------------MAIFDTIRHIRPDVST  185 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG-------------------------laIYDtmr~i~~~V~T  185 (221)
                      ++.++...+.+.|..++.++   .+.+.+.+-|+...+|                         ..++..|..++.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            77888888988888887543   3456666555432211                         2466778888999999


Q ss_pred             EEcceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          186 VCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       186 v~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .+.|.|...|.-|++++|  -|++.+++.|-+-++
T Consensus       104 ~v~G~a~GgG~~la~~~D--~~ia~~~a~f~~pe~  136 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLFD--AVYASDRATFHTPFS  136 (245)
T ss_dssp             EECSCEETHHHHGGGGCS--EEEEETTCEEECCTG
T ss_pred             EECCccccccccchhhhh--hhhhhccCeEecccc
Confidence            999999999999999998  899999999876543

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.17  E-value=0.0098  Score=50.30  Aligned_cols=89  Identities=15%  Similarity=0.028  Sum_probs=65.5

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEE----eCCCCCHHH------------------HHHHHHHHHhcCCCeEEEE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYL----NSPGGSVTA------------------GMAIFDTIRHIRPDVSTVC  187 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyI----NSPGGsV~a------------------GlaIYDtmr~i~~~V~Tv~  187 (221)
                      .++.++.+.+.+.|..++.++..+-|.|.=    =|.|+++..                  ...++..|+.++.||.+.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  110 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVKGVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVAAI  110 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCccceeec
Confidence            477788888888888877654444333321    133344321                  2357788889999999999


Q ss_pred             cceechHHHHHHhcCCCCcEEeecCceeEEeec
Q 027632          188 VGLAASMGAFLLSAGTKGKYLCFLAWFLLVIFV  220 (221)
Q Consensus       188 ~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~~  220 (221)
                      .|.|.+.|.-|++++|  .|++.+++.|-+-++
T Consensus       111 ~G~a~GgG~elal~cD--~ria~~~a~f~~pe~  141 (310)
T d1wdka4         111 NGIALGGGLEMCLAAD--FRVMADSAKIGLPEV  141 (310)
T ss_dssp             CSCEETHHHHHHHTSS--EEEEETTCEEECGGG
T ss_pred             cccccccccccchhhh--hhhccccceeccccc
Confidence            9999999999999998  899999998876553

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.09  E-value=0.0079  Score=50.81  Aligned_cols=87  Identities=14%  Similarity=0.136  Sum_probs=68.7

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|.|+.+.+.....-+...+..  +-||...+|+||          |-+.+|..+..++...+.|..||+.|-+.+.|.+
T Consensus        78 ~G~~~~~~a~Ka~~fi~lc~~~--~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~~  155 (263)
T d1xnya2          78 AGCLDITASEKAARFVRTCDAF--NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYD  155 (263)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             cCCcchhhHHHHHHHHHHHHHh--CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCcccccee
Confidence            4889999887776555555543  478999999999          5577899999999999999999999999987666


Q ss_pred             HHhcC--CCCcEEeecCceeE
Q 027632          198 LLSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAG--dkgkR~AlPnS~~M  216 (221)
                      .+++.  .....++.|++.+-
T Consensus       156 ~m~~~~~~~d~~~awP~a~~g  176 (263)
T d1xnya2         156 VMGSKHLGADLNLAWPTAQIA  176 (263)
T ss_dssp             HTTCGGGTCSEEEECTTCEEE
T ss_pred             ccCCcccCCcEEEEcchhhhh
Confidence            65542  23478999999864

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0097  Score=48.64  Aligned_cols=86  Identities=15%  Similarity=0.065  Sum_probs=62.3

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEe----CCCCCHHH--------------------------HHHHHHHHHhc
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLN----SPGGSVTA--------------------------GMAIFDTIRHI  179 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyIN----SPGGsV~a--------------------------GlaIYDtmr~i  179 (221)
                      .++.++...+...|..++.++..+-|.|.=+    |.|+++..                          ...+++.|..+
T Consensus        28 a~~~~~~~el~~al~~~~~d~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  107 (266)
T d1pjha_          28 ALEGEDYIYLGELLELADRNRDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAFIKH  107 (266)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence            4677888888888888876543333333211    45565432                          22477789999


Q ss_pred             CCCeEEEEcceechHHHHHHhcCCCCcEEeecC-ceeEE
Q 027632          180 RPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLA-WFLLV  217 (221)
Q Consensus       180 ~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPn-S~~MI  217 (221)
                      +.||.+.+.|.|.+.|..|++++|  -|+|.+. +.+.+
T Consensus       108 ~kP~IAav~G~a~GgG~~lal~~D--~~ia~~~~~~~~~  144 (266)
T d1pjha_         108 SKVLICCLNGPAIGLSAALVALCD--IVYSINDKVYLLY  144 (266)
T ss_dssp             CSEEEEEECSCEEHHHHHHHHHSS--EEEESSTTCEEEC
T ss_pred             chhhhhhhhcccccccccchhccc--hhhhhhccccccc
Confidence            999999999999999999999998  7898765 55554

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.01  E-value=0.0084  Score=50.58  Aligned_cols=87  Identities=17%  Similarity=0.239  Sum_probs=69.7

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|.|+.+.+.....-+...+..  +=||...+|+||          |-+.+|..+..++...+.|..||+.|-+.+.|++
T Consensus        80 ~G~~~~~~a~Kaa~fi~lc~~~--~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~~  157 (264)
T d1vrga2          80 AGVLDIDSSDKAARFIRFLDAF--NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccchhhhhHHHHHHHHHHHHHh--CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHhh
Confidence            4779998877765555544443  478999999999          6688999999999999999999999999998887


Q ss_pred             HHhcC--CCCcEEeecCceeE
Q 027632          198 LLSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAG--dkgkR~AlPnS~~M  216 (221)
                      .+++.  .....++.|++.+-
T Consensus       158 am~~~~~~~d~~~awP~a~~~  178 (264)
T d1vrga2         158 AMGSKHLGADMVLAWPSAEIA  178 (264)
T ss_dssp             HTTCGGGTCSEEEECTTCEEE
T ss_pred             hccCCccCCCeeeeccceeEE
Confidence            77641  23478999998764

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.015  Score=47.58  Aligned_cols=83  Identities=8%  Similarity=0.049  Sum_probs=61.7

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCC-------CCH--------------HHHHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG-------GSV--------------TAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG-------GsV--------------~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++...+.+.|..++. +..+ ..|..-+.|       +++              .....+++.|..++.||.+.+.|
T Consensus        28 l~~~~~~~l~~al~~~~~-~~~~-~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  105 (261)
T d1ef8a_          28 LSKVFIDDLMQALSDLNR-PEIR-CIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCS-TTCC-EEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhC-CCCE-EEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccc
Confidence            677788888888777653 3222 223333333       332              22458999999999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|...|..|++++|  -|++.+++.|-+
T Consensus       106 ~a~GgG~~lal~cD--~ria~~~a~~~~  131 (261)
T d1ef8a_         106 SVWGGAFEMIMSSD--LIIAASTSTFSM  131 (261)
T ss_dssp             EEETHHHHHHHHSS--EEEEETTCEEEC
T ss_pred             cccchhhhhhhhhh--hhhhhHhHHHhh
Confidence            99999999999999  899999988754

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.86  E-value=0.0097  Score=50.25  Aligned_cols=87  Identities=11%  Similarity=0.156  Sum_probs=69.5

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|.|+.+.++....-+...+.-  +=||...+|+||          |-+..|-.+..++.....|..||+.|-|.+.|++
T Consensus        80 ~G~~~~~~a~Kaarfi~lc~~~--~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g~~  157 (264)
T d1on3a2          80 SGCLDINASDKAAEFVNFCDSF--NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSYL  157 (264)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             ccccChHHHHHHHHHHHHHHhc--CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCcccc
Confidence            7788888776665444444443  579999999999          7788999999999999999999999999998888


Q ss_pred             HHhcCC--CCcEEeecCceeE
Q 027632          198 LLSAGT--KGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAGd--kgkR~AlPnS~~M  216 (221)
                      .++++.  ...+++.|++.+-
T Consensus       158 am~g~~~~~d~~~aWP~A~~~  178 (264)
T d1on3a2         158 AMCNRDLGADAVYAWPSAEIA  178 (264)
T ss_dssp             TTTCGGGTCSEEEECTTCEEE
T ss_pred             ccccccCChhheeeHHhhHhh
Confidence            777542  3468999988763

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.81  E-value=0.011  Score=49.97  Aligned_cols=87  Identities=15%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceechHHHH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAASMGAF  197 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAASmAa~  197 (221)
                      +|.++.+.+.....-+...+..  +-+|..++|+||          |-+..|..+..++...+.|..||+.|-+.++|++
T Consensus        83 ~G~~~~~~~~Ka~rfi~lc~~~--~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~~~  160 (271)
T d2a7sa2          83 AGCLDINASEKAARFVRTCDCF--NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC  160 (271)
T ss_dssp             GGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHHHHh--CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchhhh
Confidence            5889998887765444434432  578999999999          6688999999999999999999999999997766


Q ss_pred             HHhcC--CCCcEEeecCceeE
Q 027632          198 LLSAG--TKGKYLCFLAWFLL  216 (221)
Q Consensus       198 IlaAG--dkgkR~AlPnS~~M  216 (221)
                      .+++.  .....++.|++.+-
T Consensus       161 am~~~~~~~d~~~AwP~A~ig  181 (271)
T d2a7sa2         161 VMGSKDMGCDVNLAWPTAQIA  181 (271)
T ss_dssp             HTTCGGGTCSEEEECTTCEEE
T ss_pred             hhcccccccceEEEecceeEe
Confidence            66542  23478999998763

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.76  E-value=0.0025  Score=51.65  Aligned_cols=85  Identities=15%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHH-------------------HHHHHHHHhcCCCeEEEEccee
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAG-------------------MAIFDTIRHIRPDVSTVCVGLA  191 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aG-------------------laIYDtmr~i~~~V~Tv~~GlA  191 (221)
                      ++.++.+++.+.|..++.++..+-|  .|.+-|+...+|                   ..+++.|..++.||.+.+.|.|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~v~~v--vl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a  108 (260)
T d1mj3a_          31 LCNGLIEELNQALETFEEDPAVGAI--VLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA  108 (260)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEE--EEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcceE--EEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcCeE
Confidence            6777888888888777765434332  334444332222                   2345677888899999999999


Q ss_pred             chHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          192 ASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       192 ASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      ..+|..|++++|  -|++.+++.|.+-+
T Consensus       109 ~GgG~~lal~~D--~~ia~~~a~f~~pe  134 (260)
T d1mj3a_         109 LGGGCELAMMCD--IIYAGEKAQFGQPE  134 (260)
T ss_dssp             ETHHHHHHHHSS--EEEEETTCEEECGG
T ss_pred             eHHHHHHHHHCC--EEEEcCCCEEECch
Confidence            999999999999  79999999887643

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.013  Score=47.99  Aligned_cols=85  Identities=13%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             ccChhHHHHHHHHHhcccccCCCCceEEEEeCCC------CCHHH-------------------HHHHHHHHHhcCCCeE
Q 027632          130 PVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG------GSVTA-------------------GMAIFDTIRHIRPDVS  184 (221)
Q Consensus       130 ~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG------GsV~a-------------------GlaIYDtmr~i~~~V~  184 (221)
                      .++.++.+++...|..++.+ +.+  .|.|.+-|      +++..                   ...++..|..++.||.
T Consensus        26 als~~~~~el~~al~~~~~d-~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I  102 (258)
T d2fw2a1          26 ALNTEVIKEMVNALNSAAAD-DSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIV  102 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHS-SCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHcC-CCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeee
Confidence            36678888888888877654 344  34455544      34321                   2346667888899999


Q ss_pred             EEEcceechHHHHHHhcCCCCcEEeecCceeEEee
Q 027632          185 TVCVGLAASMGAFLLSAGTKGKYLCFLAWFLLVIF  219 (221)
Q Consensus       185 Tv~~GlAASmAa~IlaAGdkgkR~AlPnS~~MIh~  219 (221)
                      +.+.|.|..+|..|++++|  -|++.+++.|-+.+
T Consensus       103 aav~G~a~GgG~~lal~~D--~~ia~~~a~f~~pe  135 (258)
T d2fw2a1         103 VSVNGPAIGLGASILPLCD--LVWANEKAWFQTPY  135 (258)
T ss_dssp             EEECSCEETHHHHTGGGSS--EEEEETTCEEECCH
T ss_pred             eeccccccccccccccccc--ccceecccceeecc
Confidence            9999999999999999998  79999999886554

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=95.46  E-value=0.015  Score=47.28  Aligned_cols=84  Identities=10%  Similarity=0.018  Sum_probs=62.0

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCC-------CH---------------HHHHHHHHHHHhcCCCeEEEEc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG-------SV---------------TAGMAIFDTIRHIRPDVSTVCV  188 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGG-------sV---------------~aGlaIYDtmr~i~~~V~Tv~~  188 (221)
                      ++.++.+.+.+.|..++.++..+-|.|  .+-|+       ++               .....++..|..++.||.+.+.
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~~vvl--~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFRGVIL--TSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEE--EESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCccEEEE--EeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            567778888888877776443343333  33332       22               2333577788899999999999


Q ss_pred             ceechHHHHHHhcCCCCcEEeecCceeEEe
Q 027632          189 GLAASMGAFLLSAGTKGKYLCFLAWFLLVI  218 (221)
Q Consensus       189 GlAASmAa~IlaAGdkgkR~AlPnS~~MIh  218 (221)
                      |.|...|.-|++++|  .|++.+++.|.+.
T Consensus       105 G~a~GgG~~lal~~D--~~ia~~~a~f~~~  132 (249)
T d1sg4a1         105 GACPAGGCLVALTCD--YRILADNPRYCIG  132 (249)
T ss_dssp             EEBCHHHHHHHTTSS--EEEEECCTTCCBS
T ss_pred             ccccccccccccccc--cceeecccccccc
Confidence            999999999999998  8999999887543

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.34  E-value=0.024  Score=47.02  Aligned_cols=87  Identities=16%  Similarity=0.045  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCC----CCCHH---------------------------------HHHHHH
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSP----GGSVT---------------------------------AGMAIF  173 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSP----GGsV~---------------------------------aGlaIY  173 (221)
                      ++.++.+.+.+.|..++.++..+-|.|.=+.+    ||...                                 ....++
T Consensus        44 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (297)
T d1q52a_          44 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQ  123 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHH
Confidence            77888888888888887765556555544433    33221                                 012577


Q ss_pred             HHHHhcCCCeEEEEcceechHHHHHHhcCCCCcEEeecCc-eeEEee
Q 027632          174 DTIRHIRPDVSTVCVGLAASMGAFLLSAGTKGKYLCFLAW-FLLVIF  219 (221)
Q Consensus       174 Dtmr~i~~~V~Tv~~GlAASmAa~IlaAGdkgkR~AlPnS-~~MIh~  219 (221)
                      +.|..++.||.+.+.|.|...|..|++++|  -|++.+.+ .|-+.+
T Consensus       124 ~~i~~~~kPvIaav~G~a~GGG~~lal~~D--~~ia~~~~~~f~~pe  168 (297)
T d1q52a_         124 RLIRFMPKVVICLVNGWAAGGGHSLHVVCD--LTLASREYARFKQTD  168 (297)
T ss_dssp             HHHHHSSSEEEEEECSEEETHHHHHHHHSS--EEEEETTTCEEECCG
T ss_pred             HHHHhcCCeEEEEEcceeeeccchhhhhhh--ccccccccccceeee
Confidence            788889999999999999999999999998  78888765 455544

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=94.46  E-value=0.073  Score=45.46  Aligned_cols=78  Identities=9%  Similarity=0.096  Sum_probs=62.7

Q ss_pred             EEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEcceech
Q 027632          124 IIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCVGLAAS  193 (221)
Q Consensus       124 IIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~GlAAS  193 (221)
                      ....+|.|+.+.+.....-+...+..  .-+|...+|+||          |-+..|-.+..++.....|..||++|-+.+
T Consensus        92 ~~~~~G~l~~~~a~K~~rfi~lc~~~--~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~G  169 (299)
T d1pixa3          92 SVGIGGKLYRQGLVKMNEFVTLCARD--RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGTA  169 (299)
T ss_dssp             CCEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEET
T ss_pred             CcCCCCccCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEeccccc
Confidence            34689999999888776555544443  468999999999          457788889999999999999999999999


Q ss_pred             HHHHHHhcCC
Q 027632          194 MGAFLLSAGT  203 (221)
Q Consensus       194 mAa~IlaAGd  203 (221)
                      .|++.+++..
T Consensus       170 ~a~~am~g~~  179 (299)
T d1pixa3         170 AAHYVLGGPQ  179 (299)
T ss_dssp             THHHHTTCTT
T ss_pred             ccccccccCc
Confidence            8887766543

>d1szoa_ c.14.1.3 (A:) 6-oxo camphor hydrolase {Rhodococcus erythropolis [TaxId: 1833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 6-oxo camphor hydrolase
species: Rhodococcus erythropolis [TaxId: 1833]

Probab=93.72  E-value=0.14  Score=41.47  Aligned_cols=82  Identities=11%  Similarity=0.079  Sum_probs=59.2

Q ss_pred             cChhHHHHHHHHHhcccccCCCCceEEEEeCCCC------C---------------HHHHHHHHHHHHhcCCCeEEEEcc
Q 027632          131 VEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGG------S---------------VTAGMAIFDTIRHIRPDVSTVCVG  189 (221)
Q Consensus       131 Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGG------s---------------V~aGlaIYDtmr~i~~~V~Tv~~G  189 (221)
                      ++.++.+.+...|..++.++..+  .+.|.+-|.      +               ......++..|..++.||.+.+.|
T Consensus        37 l~~~~~~el~~al~~~~~d~~v~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~pvIa~v~g  114 (249)
T d1szoa_          37 WTSTAHDELAYCFHDIACDRENK--VVILTGTGPSFCNEIDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAAVNG  114 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCC--EEEEECBTTBSBCEECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--eEeeecccccccccchhhhhhcccccchhhhhhhhhhhhhhcccCcccceeeecc
Confidence            56778888888888777644333  234444442      2               234557788899999999999999


Q ss_pred             eechHHHHHHhcCCCCcEEeecCceeEE
Q 027632          190 LAASMGAFLLSAGTKGKYLCFLAWFLLV  217 (221)
Q Consensus       190 lAASmAa~IlaAGdkgkR~AlPnS~~MI  217 (221)
                      .|++ |..|++++|  -|++.+++.|..
T Consensus       115 ~~~G-G~~l~l~~D--~ria~~~a~f~~  139 (249)
T d1szoa_         115 PVTN-APEIPVMSD--IVLAAESATFQD  139 (249)
T ss_dssp             CBCS-STHHHHTSS--EEEEETTCEEEC
T ss_pred             cccc-ccccccccc--cccccCCcEEEE
Confidence            8766 567777887  799999998864

>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=91.00  E-value=0.24  Score=41.66  Aligned_cols=85  Identities=12%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             cCccChhHHHHHHHHHhcccccCCCCceEEEEeCCCCCHHHHH-----------HHHHH--HHhcCCCeEEEEcceechH
Q 027632          128 GGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPGGSVTAGM-----------AIFDT--IRHIRPDVSTVCVGLAASM  194 (221)
Q Consensus       128 ~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPGGsV~aGl-----------aIYDt--mr~i~~~V~Tv~~GlAASm  194 (221)
                      +|-+++...+.+...+. +..+. .-|+...++|||+.+..+.           .+++.  |.....|+.+++.|-|.+.
T Consensus       117 gGs~~~~~~~K~~r~~~-lA~~~-~lP~I~l~ds~Ga~~~~~~e~~~~~~~~g~~~~~~a~ls~~~VP~Isvv~G~~~gG  194 (287)
T d1pixa2         117 AGAWVPGQAECLLRASD-TAKTL-HVPLVYVLNCSGVKFDEQEKVYPNRRGGGTPFFRNAELNQLGIPVIVGIYGTNPAG  194 (287)
T ss_dssp             TTEECTTHHHHHHHHHH-HHHHH-TCCEEEEECCCEECGGGHHHHSSSTTSTTHHHHHHHHHHHTTCCEEEEECSEEETH
T ss_pred             cccchhhHHHHHHHHHH-hhhhc-CCCEEEEecCCcccCCcchhhccchhhHHHHHHHHHHHhhcCCCeEEEecCCcccc
Confidence            47777777776655433 33222 4789999999998865332           33333  3344679999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCceeE
Q 027632          195 GAFLLSAGTKGKYLCFLAWFLL  216 (221)
Q Consensus       195 Aa~IlaAGdkgkR~AlPnS~~M  216 (221)
                      |++..++++  -.++.+++.+.
T Consensus       195 gAy~~~~~~--~i~~~~~a~i~  214 (287)
T d1pixa2         195 GGYHSISPT--VIIAHEKANMA  214 (287)
T ss_dssp             HHHHHHSSS--EEEEETTCEEE
T ss_pred             ceeccccce--eEEecCCeEEE
Confidence            999776665  45666666553

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.18  E-value=0.47  Score=42.23  Aligned_cols=92  Identities=12%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             cEEEEcCccChhHHHHHHHHHhcccccCCCCceEEEEeCCC----------CCHHHHHHHHHHHHhcCCCeEEEEc--ce
Q 027632          123 RIIRCGGPVEDDMANIIVAQLLYLDAVDPNKDIIMYLNSPG----------GSVTAGMAIFDTIRHIRPDVSTVCV--GL  190 (221)
Q Consensus       123 RIIfL~G~Idd~~A~~IiaqLl~Lds~d~~kdI~LyINSPG----------GsV~aGlaIYDtmr~i~~~V~Tv~~--Gl  190 (221)
                      .+...||.+.++.+......+..+.. ...-||.+++|.||          |-+..|-.|.+++..++.|+.+++.  |-
T Consensus       102 ~~~~~Ggv~~p~sA~K~A~~i~d~cd-~~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~  180 (404)
T d1uyra2         102 LIQEPGQVWHPNSAFKTAQAINDFNN-GEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGE  180 (404)
T ss_dssp             EEEECTTCBCHHHHHHHHHHHHHHHT-TSCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCE
T ss_pred             hhhccCCccCchHHHHHHHHHHHhhh-ccccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            35677889999888777665654432 12579999999999          6688999999999999999999995  54


Q ss_pred             echHHHHHHhcCCCC----cEEeecCceeE
Q 027632          191 AASMGAFLLSAGTKG----KYLCFLAWFLL  216 (221)
Q Consensus       191 AASmAa~IlaAGdkg----kR~AlPnS~~M  216 (221)
                      +.+ |+++.+++...    ..||.|++..-
T Consensus       181 ~~G-Ga~vv~~~~~~~~~~~~yAwP~a~~g  209 (404)
T d1uyra2         181 LRG-GSWVVVDPTINADQMEMYADVNARAG  209 (404)
T ss_dssp             EEH-HHHHTTCGGGGTTTEEEEEETTCEEE
T ss_pred             cch-hhhhcccCccCCccceEEECCccccc
Confidence            554 56655554321    24788988653