Citrus Sinensis ID: 027637

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-
MNSFHLSPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR
cccccccccccccccccccccccccccHHHHHccHHHHHHHHHHHcccccccHHHHHHHcHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcc
cccccccccccccccccEEcccccccEEEEEcccccccccHHHHHHccccHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccccHEEEEEccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcc
mnsfhlsplafvtpesslscnyhstqIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMlgsmdggeistsAYDTAWVALIKdidgndapqfpscLQWIadnqlpdgswgddkiFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNlskleneneehttcgfevaFPSLLEIARSldieipdhshVLQNIYAMRNFKLKR
MNSFHLSPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLlsrmddnqvevlevsasneikKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR
MNSFHLSPLAFVTPESSLSCNYHSTQIVYIsrvvdrlvlkvrkcllsrMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR
********LAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNF****
**********************************************************************IIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLK*
MNSFHLSPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR
*******PLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLK*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNSFHLSPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHxxxxxxxxxxxxxxxxxxxxxNEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query221 2.2.26 [Sep-21-2011]
E2IHE0 808 Copal-8-ol diphosphate hy N/A no 0.678 0.185 0.614 9e-52
O04408 801 Ent-copalyl diphosphate s N/A no 0.751 0.207 0.557 3e-51
Q38802 802 Ent-copalyl diphosphate s yes no 0.723 0.199 0.567 2e-48
Q6E7D7 767 Syn-copalyl diphosphate s N/A no 0.678 0.195 0.546 1e-44
Q0JF02 767 Syn-copalyl diphosphate s no no 0.678 0.195 0.546 1e-44
Q6ET36 867 Ent-copalyl diphosphate s no no 0.778 0.198 0.482 4e-44
Q947C4 873 Levopimaradiene synthase, N/A no 0.733 0.185 0.469 2e-40
Q6Z5I0 800 Ent-copalyl diphosphate s no no 0.737 0.203 0.443 3e-38
Q5MQ85 800 Ent-copalyl diphosphate s N/A no 0.737 0.203 0.443 3e-38
Q50EK2 850 Levopimaradiene synthase, N/A no 0.742 0.192 0.451 7e-37
>sp|E2IHE0|CLDS_CISCR Copal-8-ol diphosphate hydratase, chloroplastic OS=Cistus creticus subsp. creticus GN=CLS PE=1 SV=1 Back     alignment and function desciption
 Score =  203 bits (516), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 117/153 (76%), Gaps = 3/153 (1%)

Query: 72  IKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIF 131
           +KSM  SM  G+IS SAYDTAWVAL+KD++G+  PQFPS LQWI DNQLPDGSWGD ++F
Sbjct: 107 VKSMFDSMGDGDISISAYDTAWVALVKDVNGSGGPQFPSSLQWIVDNQLPDGSWGDSEVF 166

Query: 132 LAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTT---CGFEVAFP 188
            A+DRL+ TLAC+VALKSWNI  DKC+KG+ F + N+SKLE EN E +     GFEV F 
Sbjct: 167 SAYDRLLKTLACVVALKSWNIRPDKCQKGLKFFRDNISKLEKENVEASAQMLSGFEVVFL 226

Query: 189 SLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
           SL+E+AR LDI+IP HS V +++ A RN K  +
Sbjct: 227 SLIEVARRLDIQIPLHSPVFEDLIARRNLKFAK 259
Involved in the biosynthesis of oxygen-containing labdane-type diterpenes that may be implicated in direct and indirect defense mechanisms. No activity with geranyl diphosphate or farnesyl diphosphate as substrate.
Cistus creticus subsp. creticus (taxid: 483148)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 3EC: 3
>sp|O04408|KSA_PEA Ent-copalyl diphosphate synthase, chloroplastic OS=Pisum sativum PE=2 SV=1 Back     alignment and function description
>sp|Q38802|KSA_ARATH Ent-copalyl diphosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=GA1 PE=1 SV=1 Back     alignment and function description
>sp|Q6E7D7|CPS4_ORYSI Syn-copalyl diphosphate synthase OS=Oryza sativa subsp. indica GN=CPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q0JF02|CPS4_ORYSJ Syn-copalyl diphosphate synthase OS=Oryza sativa subsp. japonica GN=CPS4 PE=2 SV=1 Back     alignment and function description
>sp|Q6ET36|CPS1_ORYSJ Ent-copalyl diphosphate synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CPS1 PE=2 SV=1 Back     alignment and function description
>sp|Q947C4|TPSD1_GINBI Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1 Back     alignment and function description
>sp|Q6Z5I0|CPS2_ORYSJ Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. japonica GN=CPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q5MQ85|CPS2_ORYSI Ent-copalyl diphosphate synthase 2 OS=Oryza sativa subsp. indica GN=CPS2 PE=2 SV=1 Back     alignment and function description
>sp|Q50EK2|TPSD1_PINTA Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
224082644 807 copalyl diphosphate synthase [Populus tr 0.778 0.213 0.680 3e-62
224066499 795 copalyl diphosphate synthase [Populus tr 0.778 0.216 0.668 7e-61
255559426 800 Ent-kaurene synthase A, chloroplast prec 0.819 0.226 0.625 1e-60
356570580 816 PREDICTED: ent-copalyl diphosphate synth 0.737 0.199 0.656 5e-59
291513240 798 copalyldiphosphate synthase [Helianthus 0.723 0.200 0.65 8e-59
449811539 799 copalyl diphosphate synthase [Pyrus comm 0.719 0.198 0.660 1e-58
356503551 806 PREDICTED: ent-copalyl diphosphate synth 0.737 0.202 0.621 4e-57
296085200 828 unnamed protein product [Vitis vinifera] 0.751 0.200 0.650 5e-57
359479685 818 PREDICTED: ent-copalyl diphosphate synth 0.751 0.202 0.650 5e-57
237510825 821 copalyl diphosphate synthase [Coffea ara 0.751 0.202 0.626 2e-56
>gi|224082644|ref|XP_002306777.1| copalyl diphosphate synthase [Populus trichocarpa] gi|222856226|gb|EEE93773.1| copalyl diphosphate synthase [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  243 bits (621), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 135/172 (78%)

Query: 50  DDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFP 109
           DD + +  +VS + EI K    IK+ML  M+ GEIS SAYDTAWVAL++DI+G+  PQFP
Sbjct: 57  DDAEEDAAKVSVAKEISKRVRTIKAMLDMMEDGEISISAYDTAWVALVEDINGSGLPQFP 116

Query: 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLS 169
           S LQWIA+NQLPDGSWGD  IFLAHDRLINTLAC+VALKSWN+H DKCEKG+ F + NL 
Sbjct: 117 SSLQWIANNQLPDGSWGDAGIFLAHDRLINTLACVVALKSWNLHQDKCEKGMLFFRDNLC 176

Query: 170 KLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
           KLE+EN EH   GFEVAFPSLL IA+ LDIE+PD S  LQ IYA RN KLKR
Sbjct: 177 KLEDENAEHMPIGFEVAFPSLLAIAKELDIEVPDDSTFLQEIYARRNLKLKR 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224066499|ref|XP_002302110.1| copalyl diphosphate synthase [Populus trichocarpa] gi|222843836|gb|EEE81383.1| copalyl diphosphate synthase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255559426|ref|XP_002520733.1| Ent-kaurene synthase A, chloroplast precursor, putative [Ricinus communis] gi|223540118|gb|EEF41695.1| Ent-kaurene synthase A, chloroplast precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356570580|ref|XP_003553463.1| PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|291513240|emb|CBL42915.1| copalyldiphosphate synthase [Helianthus annuus] gi|298357284|emb|CBM82407.1| copalyldiphosphate synthase [Helianthus annuus] Back     alignment and taxonomy information
>gi|449811539|gb|AGF25267.1| copalyl diphosphate synthase [Pyrus communis] Back     alignment and taxonomy information
>gi|356503551|ref|XP_003520571.1| PREDICTED: ent-copalyl diphosphate synthase, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|296085200|emb|CBI28695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479685|ref|XP_002272869.2| PREDICTED: ent-copalyl diphosphate synthase, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
>gi|237510825|gb|ACQ99373.1| copalyl diphosphate synthase [Coffea arabica] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query221
UNIPROTKB|E2IHE0 808 CLS "Copal-8-ol diphosphate hy 0.678 0.185 0.614 6.5e-48
TAIR|locus:2140260 802 GA1 "GA REQUIRING 1" [Arabidop 0.723 0.199 0.574 7.6e-45
UNIPROTKB|Q6ET36 867 CPS1 "Ent-copalyl diphosphate 0.778 0.198 0.491 4.1e-41
UNIPROTKB|Q6Z5I0 800 CPS2 "Ent-copalyl diphosphate 0.742 0.205 0.455 4.6e-35
UNIPROTKB|G9MAN7 867 mds "Miltiradiene synthase" [S 0.542 0.138 0.462 2.9e-26
TAIR|locus:2206390 785 GA2 "GA REQUIRING 2" [Arabidop 0.742 0.208 0.381 1.2e-23
UNIPROTKB|O50406 501 Rv3377c "Type B diterpene cycl 0.615 0.271 0.355 5.4e-15
UNIPROTKB|Q96WT2 944 ACS "Aphidicolan-16beta-ol syn 0.628 0.147 0.286 4.3e-08
TAIR|locus:2008485 877 TPS04 "terpene synthase 04" [A 0.524 0.132 0.300 1e-05
ASPGD|ASPL0000045273 979 AN1594 [Emericella nidulans (t 0.533 0.120 0.293 7.9e-05
UNIPROTKB|E2IHE0 CLS "Copal-8-ol diphosphate hydratase, chloroplastic" [Cistus creticus subsp. creticus (taxid:483148)] Back     alignment and assigned GO terms
 Score = 506 (183.2 bits), Expect = 6.5e-48, P = 6.5e-48
 Identities = 94/153 (61%), Positives = 117/153 (76%)

Query:    72 IKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIF 131
             +KSM  SM  G+IS SAYDTAWVAL+KD++G+  PQFPS LQWI DNQLPDGSWGD ++F
Sbjct:   107 VKSMFDSMGDGDISISAYDTAWVALVKDVNGSGGPQFPSSLQWIVDNQLPDGSWGDSEVF 166

Query:   132 LAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHTT---CGFEVAFP 188
              A+DRL+ TLAC+VALKSWNI  DKC+KG+ F + N+SKLE EN E +     GFEV F 
Sbjct:   167 SAYDRLLKTLACVVALKSWNIRPDKCQKGLKFFRDNISKLEKENVEASAQMLSGFEVVFL 226

Query:   189 SLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
             SL+E+AR LDI+IP HS V +++ A RN K  +
Sbjct:   227 SLIEVARRLDIQIPLHSPVFEDLIARRNLKFAK 259
GO:0006952 "defense response" evidence=IDA
GO:0010333 "terpene synthase activity" evidence=IDA
GO:0033385 "geranylgeranyl diphosphate metabolic process" evidence=IDA
TAIR|locus:2140260 GA1 "GA REQUIRING 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ET36 CPS1 "Ent-copalyl diphosphate synthase 1, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q6Z5I0 CPS2 "Ent-copalyl diphosphate synthase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|G9MAN7 mds "Miltiradiene synthase" [Selaginella moellendorffii (taxid:88036)] Back     alignment and assigned GO terms
TAIR|locus:2206390 GA2 "GA REQUIRING 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|O50406 Rv3377c "Type B diterpene cyclase" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
UNIPROTKB|Q96WT2 ACS "Aphidicolan-16beta-ol synthase" [Phoma betae (taxid:137527)] Back     alignment and assigned GO terms
TAIR|locus:2008485 TPS04 "terpene synthase 04" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000045273 AN1594 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
CPS2
copalyl diphosphate synthase (EC-5.5.1.13) (807 aa)
(Populus trichocarpa)
Predicted Functional Partners:
KS
ent-kaurene synthase (EC-4.2.3.19) (743 aa)
     •••0.912
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.800
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.800
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.800
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.800
gw1.66.323.1
geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (413 aa)
     •  0.800
grail3.0045022601
hypothetical protein (259 aa)
     •  0.800
grail3.0001025501
hypothetical protein (314 aa)
     •  0.800
grail3.0001010701
geranylgeranyl reductase (CHL P) (EC-1.3.1.-) (454 aa)
     •  0.800
fgenesh4_pm.C_LG_II001087
hypothetical protein (287 aa)
     •  0.800

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
PLN02592 800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 2e-91
PLN02279 784 PLN02279, PLN02279, ent-kaur-16-ene synthase 6e-34
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 6e-04
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information 
 Score =  284 bits (728), Expect = 2e-91
 Identities = 115/172 (66%), Positives = 137/172 (79%)

Query: 50  DDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFP 109
           DD + E  + S SNEIK+    +KSML SM+ GEIS SAYDTAWVAL++DI+G+  PQFP
Sbjct: 59  DDIEEEASKGSVSNEIKERVKTVKSMLSSMEDGEISISAYDTAWVALVEDINGSGTPQFP 118

Query: 110 SCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLS 169
           S LQWIA+NQL DGSWGD  +F AHDRLINTLAC+VALKSWN+H +KCEKG+SF + N+ 
Sbjct: 119 SSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFRENIC 178

Query: 170 KLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
           KLE+EN EH   GFEVAFPSLLEIA++LDIE+P  S VL+ IYA RN KL R
Sbjct: 179 KLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTR 230

Length = 800
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 221
PLN02592 800 ent-copalyl diphosphate synthase 100.0
PLN02279 784 ent-kaur-16-ene synthase 100.0
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.41
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 98.25
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 97.94
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 97.91
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 97.82
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 97.62
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 97.56
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 97.46
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 97.44
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 97.38
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 97.38
cd00688300 ISOPREN_C2_like This group contains class II terpe 97.36
cd02889 348 SQCY Squalene cyclase (SQCY) domain; found in clas 97.29
PLN03012759 Camelliol C synthase 97.21
PLN02993763 lupeol synthase 97.16
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 97.0
PLN03012759 Camelliol C synthase 96.93
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 96.61
PLN02993763 lupeol synthase 96.6
PF07678246 A2M_comp: A-macroglobulin complement component; In 96.53
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 96.46
cd00688300 ISOPREN_C2_like This group contains class II terpe 96.25
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 96.08
TIGR03463 634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 96.01
cd02892 634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 95.59
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 95.51
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 94.79
cd02891 282 A2M_like Proteins similar to alpha2-macroglobulin 94.24
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 93.61
TIGR02474 290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 93.34
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 91.84
PLN03201 316 RAB geranylgeranyl transferase beta-subunit; Provi 90.99
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 87.09
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 86.97
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 86.43
cd02893 299 FTase Protein farnesyltransferase (FTase)_like pro 83.7
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 82.98
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 81.55
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-59  Score=468.21  Aligned_cols=210  Identities=57%  Similarity=0.858  Sum_probs=188.1

Q ss_pred             cCCCccccccccccc--chhcccceeccccccc-cccccccccchhhhhhhhhhhhHHHHHHHHHHHhccCCCCCcccch
Q 027637           12 VTPESSLSCNYHSTQ--IVYISRVVDRLVLKVR-KCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLGSMDGGEISTSA   88 (221)
Q Consensus        12 ~~~~~~~~~~~~s~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~~~~~G~iS~Sa   88 (221)
                      ++.+.+.+|++++++  ++|.+..+.+.+.|++ +|++.++++...+....+.++.++.++++||+||.++++|++|||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~~~g~~S~S~   97 (800)
T PLN02592         18 RNGNIHCRCSAISKPRTQEYADVFEVQNGLPLINKWHEIVEDDIEEEASKGSVSNEIKERVKTVKSMLSSMEDGEISISA   97 (800)
T ss_pred             ccCceecccccccCCcccccccchhcccCCcccccHHhhcccccchhhccccchhhHHHHHHHHHHHHhcccCCCcCCcH
Confidence            445667899999887  8999998644467775 5555555554333344667888999999999999999999999999


Q ss_pred             hhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHHHHHhhh
Q 027637           89 YDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNL  168 (221)
Q Consensus        89 YDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~fL~~nl  168 (221)
                      ||||||||||+++|+.+|+||+||+|||+||++|||||++..++.+|||+|||||||||++|++++++|+||++||++|+
T Consensus        98 YDTAWVAmVp~~~g~~~p~FP~~~~wIl~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~rGl~fi~~nl  177 (800)
T PLN02592         98 YDTAWVALVEDINGSGTPQFPSSLQWIANNQLSDGSWGDAYLFSAHDRLINTLACVVALKSWNLHPEKCEKGMSFFRENI  177 (800)
T ss_pred             HHhHHHhhcccCCCCCCCCCHHHHHHHHHccCCCCCCCCCCCcchHHHHHhHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999876678999999999999999999999999999999999999


Q ss_pred             hhhhccccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhhhcC
Q 027637          169 SKLENENEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR  221 (221)
Q Consensus       169 ~~~~~e~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~KL~r  221 (221)
                      ++|.+++.+++|||||||||+||++|+++||+||++++.|++|+++|+.||+|
T Consensus       178 ~~~~~~~~~~~pvGFeIifP~LLe~a~~lgL~~p~~~~~l~~i~~~r~~kL~r  230 (800)
T PLN02592        178 CKLEDENAEHMPIGFEVAFPSLLEIAKNLDIEVPYDSPVLKEIYAQRNLKLTR  230 (800)
T ss_pred             HHhhcCCCCCCCceEEeeHHHHHHHHHHcCCCCCCCcHHHHHHHHhhHHHHhh
Confidence            99987777899999999999999999999999999999999999999999986

>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
3pya_A 727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 2e-49
3s9v_A 785 Abietadiene Synthase From Abies Grandis Length = 78 1e-36
3sae_A 817 Structure Of A Three-Domain Sesquiterpene Synthase: 1e-29
3p5p_A 764 Crystal Structure Of Taxadiene Synthase From Pacifi 2e-25
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure 
Iteration: 1

 Score =  191 bits (485), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/162 (56%), Positives = 120/162 (74%), Gaps = 2/162 (1%)
Query: 60  SASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQ 119
           S SN  K+    +K++L ++  GEI+ SAYDTAWVALI    G+  P FPS ++WIA+NQ
Sbjct: 6   SNSNAFKEAVKSVKTILRNLTDGEITISAYDTAWVALIDA--GDKTPAFPSAVKWIAENQ 63
Query: 120 LPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENEEHT 179
           L DGSWGD  +F  HDRLINTLAC+VAL+SWN+   +C KGI+F + N+ KLE+EN+EH 
Sbjct: 64  LSDGSWGDAYLFSYHDRLINTLACVVALRSWNLFPHQCNKGITFFRENIGKLEDENDEHM 123
Query: 180 TCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
             GFEVAFPSLLEIAR ++I++P  S VL++IYA +  KL R
Sbjct: 124 PIGFEVAFPSLLEIARGINIDVPYDSPVLKDIYAKKELKLTR 165
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query221
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-61
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 5e-57
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 7e-54
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 8e-45
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
 Score =  204 bits (520), Expect = 1e-61
 Identities = 71/165 (43%), Positives = 99/165 (60%)

Query: 57  LEVSASNEIKKLDHIIKSMLGSMDGGEISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIA 116
           +  S    I+ L   IK+M   M  GE + SAYDTAWVA I  +DG+D P FP  ++WI 
Sbjct: 25  VAASDEKRIETLISEIKNMFRCMGYGETNPSAYDTAWVARIPAVDGSDNPHFPETVEWIL 84

Query: 117 DNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGISFVKGNLSKLENENE 176
            NQL DGSWG+   FLA+DR++ TLACI+ L  W     + +KGI F +    K+E+E +
Sbjct: 85  QNQLKDGSWGEGFYFLAYDRILATLACIITLTLWRTGETQVQKGIEFFRTQAGKMEDEAD 144

Query: 177 EHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR 221
            H   GFE+ FP++L+ A+ L +++P     L+ I   R  KLKR
Sbjct: 145 SHRPSGFEIVFPAMLKEAKILGLDLPYDLPFLKQIIEKREAKLKR 189
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 100.0
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 97.34
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 97.27
2wy7_A310 Complement C3D fragment; immune system, immune res 97.21
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 96.63
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 96.62
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 96.59
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 96.46
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 96.44
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 96.41
2h6f_B 437 Protein farnesyltransferase beta subunit; ftase, f 96.26
1w6k_A 732 Lanosterol synthase; cyclase, cholesterol, monotop 96.2
3dss_B 331 Geranylgeranyl transferase type-2 subunit beta; pr 96.19
2hr0_B 915 Complement C3 alpha' chain; complement component C 96.08
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 94.44
1hzf_A 367 Complement factor C4A; alpha-alpha 6 barrel, immun 94.24
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 93.89
1n4q_B 377 Geranyltransferase type-I beta subunit; protein ge 93.67
1qqf_A 277 Protein (complement C3DG); alpha-alpha barrel, imm 93.33
2wy7_A 310 Complement C3D fragment; immune system, immune res 93.07
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 92.93
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 92.82
1r76_A 408 Pectate lyase; A-helical structure; 2.65A {Azospir 90.52
3q7a_B 520 Farnesyltransferase beta subunit; protein prenyltr 90.49
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 89.39
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 88.77
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 85.27
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 84.81
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
Probab=100.00  E-value=1.7e-58  Score=460.83  Aligned_cols=211  Identities=35%  Similarity=0.568  Sum_probs=164.3

Q ss_pred             CcccccCCCcccccccccccchhcccceeccccccccccccccccchhhhhhhhhhhhHHHHHHHHHHHhc-cCCCC---
Q 027637            7 SPLAFVTPESSLSCNYHSTQIVYISRVVDRLVLKVRKCLLSRMDDNQVEVLEVSASNEIKKLDHIIKSMLG-SMDGG---   82 (221)
Q Consensus         7 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~ik~ll~-~~~~G---   82 (221)
                      .||+++.++++++|+.+++    +...+++++.+++.|.++.+++...+.......++++.|+++||.++. ++++|   
T Consensus         2 ~~~~~~~~~~~~~~~~~~~----~~~~Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~~~~~~g~~g   77 (817)
T 3sdr_A            2 AGVSAVSKVSSLVCDLSST----SGLIRRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLNPAITGDGES   77 (817)
T ss_dssp             -------------------------------------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHHHHHTSSCCC
T ss_pred             CcccccccccccccccccC----CCccCCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhccccCCCCCc
Confidence            4789999999999998855    456788999999999999988854333235568889999999999998 88766   


Q ss_pred             CcccchhhhhhhhcccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcCcchhHHhhhHHHHHHHHhhcCChHHHHHHHH
Q 027637           83 EISTSAYDTAWVALIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIFLAHDRLINTLACIVALKSWNIHLDKCEKGIS  162 (221)
Q Consensus        83 ~iS~SaYDTAWVAmVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~~~~D~ll~TLAcvlAL~~w~~~~~~i~kGl~  162 (221)
                      ++|||+||||||||||+++|+++|+||+||+||++||++|||||++++++.+|||+||||||+||++|++++++|+||++
T Consensus        78 ~~S~S~YDTAWVAmvp~~~~~~~p~Fp~~~~wil~nQ~~DGsWg~~~~~~~~d~ll~TlAcvlAL~~w~~~~~~i~~Gl~  157 (817)
T 3sdr_A           78 MITPSAYDTAWVARVPAIDGSARPQFPQTVDWILKNQLKDGSWGIQSHFLLSDRLLATLSCVLVLLKWNVGDLQVEQGIE  157 (817)
T ss_dssp             CCCCCHHHHHHHHTCBCTTSCSSBSSHHHHHHHHHCCCTTSCCSCTTCCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             ccccCHHHhhHHheeecCCCCCCCCchHHHHHHHHccCCCCCCCCCCCcchHHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999887788999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcc-ccccCcceeeeehHHHHHHHHHCCCccCCChHHHHHHHHHHHhhhcC
Q 027637          163 FVKGNLSKLENE-NEEHTTCGFEVAFPSLLEIARSLDIEIPDHSHVLQNIYAMRNFKLKR  221 (221)
Q Consensus       163 fL~~nl~~~~~e-~~~~~pvGFEIifPaLL~~a~~lgl~~p~~~~~l~~i~~~R~~KL~r  221 (221)
                      ||++|+++|.++ +.+++|||||||||+||++|+++||+||++.+.++.|.++|+.||+|
T Consensus       158 fl~~nl~~~~~~~~~~~~~vgfeiifP~ll~~a~~~gl~~p~~~~~~~~l~~~r~~kL~~  217 (817)
T 3sdr_A          158 FIKSNLELVKDETDQDSLVTDFEIIFPSLLREAQSLRLGLPYDLPYIHLLQTKRQERLAK  217 (817)
T ss_dssp             HHHHHHTTCCSGGGSCSCCTTHHHHHHHHHHHHHHTTCSCCTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcccccCCCCcceeeeHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHhC
Confidence            999999999764 36799999999999999999999999999999999999999999986
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query221
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 97.85
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.65
d2sqca2 271 Squalene-hopene cyclase {Alicyclobacillus acidocal 97.51
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 97.47
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 97.44
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 97.12
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 96.54
d3dssb1 325 Rab geranylgeranyltransferase, beta subunit {Rat ( 94.58
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 93.92
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 92.83
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 92.69
d2h6fb1 401 Protein farnesyltransferase, beta-subunit {Human ( 92.25
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 91.61
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 90.27
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 81.45
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Terpene synthases
domain: Squalene-hopene cyclase
species: Alicyclobacillus acidocaldarius [TaxId: 405212]

Probab=97.85  E-value=2.2e-05  Score=68.45  Aligned_cols=81  Identities=22%  Similarity=0.356  Sum_probs=56.5

Q ss_pred             cchhhhhhhh--cccCCCCCCCCCchhHHHHHHHhcCCCCCCCCCCcC--------cchhHHhhhHHHHHHHHhhc-CCh
Q 027637           86 TSAYDTAWVA--LIKDIDGNDAPQFPSCLQWIADNQLPDGSWGDDKIF--------LAHDRLINTLACIVALKSWN-IHL  154 (221)
Q Consensus        86 ~SaYDTAWVA--mVp~~~g~~~p~FP~~v~wLL~nQ~~DGsWG~~~~~--------~~~D~ll~TLAcvlAL~~w~-~~~  154 (221)
                      +..|-|+.+.  |.-.-.....+.-...++||++.|++||+||.....        ...-.+.+|.-||+||...+ ...
T Consensus       214 ~~~y~t~~~l~aL~~~g~~~~~~~v~ka~~~L~~~Q~~dGgWg~~~~~~~~~~~~~~~~s~~~~Ta~al~aL~~a~~~~~  293 (352)
T d2sqca1         214 NYLYGTGAVVSALKAVGIDTREPYIQKALDWVEQHQNPDGGWGEDCRSYEDPAYAGKGASTPSQTAWALMALIAGGRAES  293 (352)
T ss_dssp             SHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHTCCTTSCCCCCGGGGTCGGGTTCSSCCHHHHHHHHHHHHHTTCSSS
T ss_pred             CcchHHHHHHHHHHhcccccchHHHHHHHHHHHhccCCCCCcccCcccccCcccCCCCCCcHHHHHHHHHHHHhcCCCCc
Confidence            4578888743  332112234466778999999999999999954100        00112788999999999875 345


Q ss_pred             HHHHHHHHHHHh
Q 027637          155 DKCEKGISFVKG  166 (221)
Q Consensus       155 ~~i~kGl~fL~~  166 (221)
                      +.|+||+.||.+
T Consensus       294 ~~i~ra~~~L~~  305 (352)
T d2sqca1         294 EAARRGVQYLVE  305 (352)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            689999999965
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure